BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030466
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PDY2|AEDO_MOUSE 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2
Length = 256
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 13 RKYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67
R P +TY HI+E E FS+G+F L IPLH+HPGM K+L+GT+ I D
Sbjct: 68 RNLPPVTYMHIYETEGFSLGVFLLKSGTCIPLHDHPGMHGMLKVLYGTVRISCMD 122
>sp|Q556I2|AEDO_DICDI Probable 2-aminoethanethiol dioxygenase OS=Dictyostelium discoideum
GN=ado-1 PE=3 SV=2
Length = 218
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 12 GRKYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWV 69
G+K + Y + E EKF++ IF PP+ IP H+HP MTV SK+L+G++ S+DW+
Sbjct: 55 GKK---VFYYPLVENEKFTLAIFAFPPNTCIPTHDHPQMTVLSKVLYGSISCDSFDWI 109
>sp|Q96SZ5|AEDO_HUMAN 2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2
Length = 270
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 18 ITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67
+TY HI+E + FS+G+F L IPLH+HPGM K+L+GT+ I D
Sbjct: 85 VTYMHIYETDGFSLGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMD 134
>sp|Q3SFK3|Y2653_THIDA UPF0753 protein Tbd_2653 OS=Thiobacillus denitrificans (strain ATCC
25259) GN=Tbd_2653 PE=3 SV=1
Length = 1043
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 76 TSADAAGVPGKTSAVAVDA--IPGETSAAAV--DIIPGKPLAAMVDVIPGKPLAAAVDAV 131
T ADAA V A+ A IP AA V D+ PG+PL AM+D++ G + A +D +
Sbjct: 120 TLADAADVHAVLRGAALPAREIPSGALAAQVGSDMPPGRPLYAMLDLLFGTEIGATLDEL 179
Query: 132 PDKNSADVVND 142
K+ D ++
Sbjct: 180 VIKSCLDFFDE 190
>sp|A6VA71|SYA_PSEA7 Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=alaS
PE=3 SV=1
Length = 874
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 89 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDK 134
A A A + SAAAVDI K LAA +D + GK L A VD + +K
Sbjct: 750 AKAASAAGDDLSAAAVDIKGAKVLAARLDGLDGKALLALVDQLKNK 795
>sp|A1JIW2|RLME_YERE8 Ribosomal RNA large subunit methyltransferase E OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rlmE PE=3 SV=1
Length = 209
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G L A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V DK V+ D N S AVD+P M
Sbjct: 110 LERVGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|Q9I553|SYA_PSEAE Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=alaS PE=3 SV=1
Length = 874
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 89 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDK 134
A A A + SAAAV+I K LAA +D + GK L A VD + +K
Sbjct: 750 AKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNK 795
>sp|Q02I63|SYA_PSEAB Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=alaS PE=3 SV=1
Length = 874
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 89 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDK 134
A A A + SAAAV+I K LAA +D + GK L A VD + +K
Sbjct: 750 AKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNK 795
>sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Hordeum
vulgare GN=SPY PE=2 SV=1
Length = 944
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGV 83
CE MG+ C+ +G + HN G+++ +K+ G + K+ D V + D ++D + +
Sbjct: 742 CESLYMGVPCVTMAGSVHAHN-VGVSLLTKVGLGRLVAKTEDEYVSLALDLASDVSAL 798
>sp|A9KZX9|RLME_SHEB9 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS195) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 50 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 109
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 110 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG--NTSADAVDVPSKM 157
P+ VD + G K L A + V D V++D + +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|A6WRH7|RLME_SHEB8 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS185) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 50 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 109
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 110 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG--NTSADAVDVPSKM 157
P+ VD + G K L A + V D V++D + +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|A3D7L4|RLME_SHEB5 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS155 / ATCC BAA-1091) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 50 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 109
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 110 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG--NTSADAVDVPSKM 157
P+ VD + G K L A + V D V++D + +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|B8E6M4|RLME_SHEB2 Ribosomal RNA large subunit methyltransferase E OS=Shewanella
baltica (strain OS223) GN=rlmE PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 50 MTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPG 109
M + S+ F I+ D ++ P T D PG S VAV A DI+P
Sbjct: 29 MGLRSRAAFKLEEIQQKDQLIR-PGMTVVDLGAAPGGWSQVAVKLAGDRGKVIACDILPM 87
Query: 110 KPLAAMVDVIPG-----KPLAAAVDAVPDKNSADVVNDNG--NTSADAVDVPSKM 157
P+ VD + G K L A + V D V++D + +D+VD P M
Sbjct: 88 DPIVG-VDFLQGDFREDKVLQALLTRVGDAKVDVVLSDMAPNMSGSDSVDQPRAM 141
>sp|Q6D9B9|RLME_ERWCT Ribosomal RNA large subunit methyltransferase E OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rlmE PE=3 SV=1
Length = 209
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A DI+P P+ VD + G L A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDILPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPKSM 141
>sp|A4WEZ0|RLME_ENT38 Ribosomal RNA large subunit methyltransferase E OS=Enterobacter sp.
(strain 638) GN=rlmE PE=3 SV=1
Length = 208
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S AV I G+ A D++P P+ VD + G L A
Sbjct: 51 PGMTIVDLGAAPGGWSQYAVTQIGGQGRIIACDLLPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 128 VDAVPDKNSADVVNDNG--NTSADAVDVPSKM 157
++ V D V++D AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMCGTPAVDIPRSM 141
>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis
thaliana GN=SPY PE=1 SV=1
Length = 914
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGV 83
CE MG+ C+ +G + HN G+++ +K+ G + K+ D V + D ++D +
Sbjct: 751 CESLYMGVPCVTMAGSVHAHN-VGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTAL 807
>sp|C6DKI3|RLME_PECCP Ribosomal RNA large subunit methyltransferase E OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rlmE PE=3
SV=1
Length = 209
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G A DI+P P+ VD + G L A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGNGRIIACDILPMDPIVG-VDFLQGDFRDELVLKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPKSM 141
>sp|Q2NW30|RLME_SODGM Ribosomal RNA large subunit methyltransferase E OS=Sodalis
glossinidius (strain morsitans) GN=rlmE PE=3 SV=1
Length = 209
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPG---KPLA--AA 127
P T D PG S I G+ A DI+P P+ VD + G +PL A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVATQIGGKGRIIACDILPMDPMVG-VDFLQGDFREPLVLQAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V ++ VV+D N S AVD+P M
Sbjct: 110 LERVGEQKVQVVVSDMAPNMSGTPAVDIPKSM 141
>sp|Q2YBT1|RLME_NITMU Ribosomal RNA large subunit methyltransferase E OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=rlmE
PE=3 SV=1
Length = 206
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 54 SKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLA 113
S+ + M I D + P T D PG S VA + + G+ A A+DI+ P++
Sbjct: 30 SRAAYKLMEIAERDHLFK-PGMTVVDLGAAPGGWSQVAAEKLKGKGRAVALDILEMAPIS 88
Query: 114 AMVDVIPGKPLAAAVDAVPDKNSADV 139
V I G A+V A + D+
Sbjct: 89 G-VTFIQGDFREASVLAELKEQLKDL 113
>sp|A4XKT3|PYRF_CALS8 Orotidine 5'-phosphate decarboxylase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=pyrF
PE=3 SV=1
Length = 305
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVD-VPSDTSADAAGV 83
+CE+F G+F L + + +TV K LF + K Y+W + V + +D V
Sbjct: 159 DCERFKKGLFVLVKTSNPSSADFQDLTVEDKYLFEVVAEKVYEWGKNCVGKEGYSDIGAV 218
Query: 84 PGKTSAVAVDAIPGETSAAAVDIIPG 109
G T A I E + ++PG
Sbjct: 219 VGATQKEAAKRIR-EILPNSFLLVPG 243
>sp|A1S454|RLME_SHEAM Ribosomal RNA large subunit methyltransferase E OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rlmE PE=3
SV=1
Length = 209
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 42 IPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSA 101
+ L G+ S+ F ++ D ++ P T D PG S VAV +
Sbjct: 23 VKLAQKRGLR--SRAAFKLEELQEKDHLIK-PGMTVVDLGAAPGGWSQVAVKLVGDRGKV 79
Query: 102 AAVDIIPGKPLAAMVDVIPGK-----PLAAAVDAVPDKNSADVVNDNG--NTSADAVDVP 154
A DI+P P+ VD + G L A ++ V D+ V++D + +D VD P
Sbjct: 80 IACDILPMDPIVG-VDFLQGDFREDAVLNALLERVGDEKVDVVLSDMAPNMSGSDGVDQP 138
Query: 155 SKM 157
M
Sbjct: 139 RAM 141
>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa
subsp. japonica GN=SPY PE=3 SV=1
Length = 927
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGV 83
CE MG+ C+ +G + HN G+++ +K+ G + KS + V + D +AD +
Sbjct: 742 CESLYMGVPCVTMAGSVHAHN-VGVSLLTKVGLGRLVAKSENEYVSLALDLAADVTAL 798
>sp|Q5E7M3|RLME_VIBF1 Ribosomal RNA large subunit methyltransferase E OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=rlmE PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 54 SKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLA 113
S+ +F I++ D ++ P T D PG S AV+ + E A DI+P +A
Sbjct: 33 SRAIFKIEEIQNKDKLLK-PGMTVVDLGAAPGGWSQYAVEQVGDEGQVIACDILPMDSIA 91
Query: 114 AMVDVIPGKPLAAAV-DAVPDKNSADVV---------NDNGNTSADAVDVPSKM 157
V + G AV DA+ ++ D+V N +GN AVD P M
Sbjct: 92 G-VSFLQGDFREEAVLDALLERIQPDMVDVVMSDMAPNMSGNL---AVDQPRAM 141
>sp|B1JMH7|RLME_YERPY Ribosomal RNA large subunit methyltransferase E OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rlmE
PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|Q66F67|RLME_YERPS Ribosomal RNA large subunit methyltransferase E OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rlmE
PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|A4TRJ0|RLME_YERPP Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis
(strain Pestoides F) GN=rlmE PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|Q1CEK6|RLME_YERPN Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rlmE PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|Q8ZBB5|RLME_YERPE Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis
GN=rlmE PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|B2K2P8|RLME_YERPB Ribosomal RNA large subunit methyltransferase E OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rlmE
PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|Q1CC00|RLME_YERPA Ribosomal RNA large subunit methyltransferase E OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rlmE PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|A7FMS9|RLME_YERP3 Ribosomal RNA large subunit methyltransferase E OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rlmE PE=3 SV=1
Length = 209
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 76 TSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAAVDA 130
T D PG S AV I + A D++P P+ VD + G L A ++
Sbjct: 54 TVVDLGAAPGGWSQYAVTQIGSKGRVIACDLLPMDPIVG-VDFLQGDFRDELVLKALLER 112
Query: 131 VPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
V DK V+ D N S AVD+P M
Sbjct: 113 VGDKKVQVVMCDMAPNMSGTPAVDIPKSM 141
>sp|Q820A2|RLME_NITEU Ribosomal RNA large subunit methyltransferase E OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rlmE PE=3
SV=1
Length = 206
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 46 NHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVD 105
NH G S+ + I +D + VP T D VPG S VA++++ A+D
Sbjct: 24 NHEGYR--SRAAYKLREIAEHDALF-VPGMTVVDLGAVPGSWSQVALESVGPTGKVFALD 80
Query: 106 IIPGKPLAAMV----DVIPGKPLAAAVDAVPDKNSADVVND 142
++ +PL M D + LA A+ K + V++D
Sbjct: 81 MLDMQPLPGMTFIQGDFRENEVLAMLEAALGGKRADLVISD 121
>sp|Q0AHW4|Y801_NITEC UPF0753 protein Neut_0801 OS=Nitrosomonas eutropha (strain C91)
GN=Neut_0801 PE=3 SV=1
Length = 1042
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 72 VPSDTSADAAGVPGKTSAVAVDAIPGETSAAA-------VDIIPGKPLAAMVDVIPGKPL 124
VP ++ D A V +A AIP ++ AA D+ P +PL +D + G L
Sbjct: 120 VPHASAEDVAAV------LAGQAIPNGSAIAAGLDAAMLADLPPWRPLTECIDSLWGTNL 173
Query: 125 AAAVDAVPDKNSADVVNDNGNT 146
AA +D + K+ D +++ ++
Sbjct: 174 AAELDELVVKSCLDFFDEDQSS 195
>sp|P64734|Y901_MYCBO Uncharacterized protein Mb0901 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0901 PE=4 SV=1
Length = 262
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 64 KSYDWVVDVPSDTSADAAG------VPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVD 117
+ + W V V S + AD A VPG T+ +A D +P E D+ PG LA D
Sbjct: 70 QGWQWAVVVASYSGADHATISEVVLVPGPTALLAPDWVPWEQRVRPGDLSPGDLLAPAKD 129
Query: 118 ---VIPGKPLAAAVDAVPDKNSADV 139
++PG A+ DA D+ +A++
Sbjct: 130 DPRLVPG--YTASGDAQVDETAAEI 152
>sp|P64733|Y877_MYCTU Uncharacterized protein Rv0877/MT0900 OS=Mycobacterium tuberculosis
GN=Rv0877 PE=4 SV=1
Length = 262
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 64 KSYDWVVDVPSDTSADAAG------VPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVD 117
+ + W V V S + AD A VPG T+ +A D +P E D+ PG LA D
Sbjct: 70 QGWQWAVVVASYSGADHATISEVVLVPGPTALLAPDWVPWEQRVRPGDLSPGDLLAPAKD 129
Query: 118 ---VIPGKPLAAAVDAVPDKNSADV 139
++PG A+ DA D+ +A++
Sbjct: 130 DPRLVPG--YTASGDAQVDETAAEI 152
>sp|A4XWE2|SYA_PSEMY Alanine--tRNA ligase OS=Pseudomonas mendocina (strain ymp) GN=alaS
PE=3 SV=2
Length = 874
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 89 AVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVV 140
A A A + + +AVD+ K LAA +D + GK L A VD + +K + V+
Sbjct: 750 AKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVI 801
>sp|Q32BF4|RLME_SHIDS Ribosomal RNA large subunit methyltransferase E OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rlmE PE=3 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B4F2B2|RLME_PROMH Ribosomal RNA large subunit methyltransferase E OS=Proteus
mirabilis (strain HI4320) GN=rlmE PE=3 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 54 SKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLA 113
S+ F I+ D + P T D PG S V + + A D++P P+
Sbjct: 33 SRAWFKLEEIQQSDNIFK-PGMTVVDLGAAPGGWSQYVVQQLGNKGRIIACDLLPMDPIV 91
Query: 114 AMVDVIPGK-----PLAAAVDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
VD + G L A +D V D V++D N S AVD+P M
Sbjct: 92 G-VDFLQGDFRDELVLKALLDRVGDNKVQVVMSDMAPNMSGTPAVDIPRSM 141
>sp|C0PZ62|RLME_SALPC Ribosomal RNA large subunit methyltransferase E OS=Salmonella
paratyphi C (strain RKS4594) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|Q57JH1|RLME_SALCH Ribosomal RNA large subunit methyltransferase E OS=Salmonella
choleraesuis (strain SC-B67) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B5BGK3|RLME_SALPK Ribosomal RNA large subunit methyltransferase E OS=Salmonella
paratyphi A (strain AKU_12601) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|Q5PLC1|RLME_SALPA Ribosomal RNA large subunit methyltransferase E OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rlmE PE=3
SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|Q8ZLS7|RLME_SALTY Ribosomal RNA large subunit methyltransferase E OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B4TWE7|RLME_SALSV Ribosomal RNA large subunit methyltransferase E OS=Salmonella
schwarzengrund (strain CVM19633) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|A9N744|RLME_SALPB Ribosomal RNA large subunit methyltransferase E OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rlmE PE=3
SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B4T708|RLME_SALNS Ribosomal RNA large subunit methyltransferase E OS=Salmonella
newport (strain SL254) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B4TJ16|RLME_SALHS Ribosomal RNA large subunit methyltransferase E OS=Salmonella
heidelberg (strain SL476) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B5REP5|RLME_SALG2 Ribosomal RNA large subunit methyltransferase E OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rlmE PE=3
SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B5R0H0|RLME_SALEP Ribosomal RNA large subunit methyltransferase E OS=Salmonella
enteritidis PT4 (strain P125109) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
>sp|B5FI23|RLME_SALDC Ribosomal RNA large subunit methyltransferase E OS=Salmonella
dublin (strain CT_02021853) GN=rlmE PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 73 PSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGK-----PLAAA 127
P T D PG S V I G+ A D++P P+ VD + G + A
Sbjct: 51 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG-VDFLQGDFRDELVMKAL 109
Query: 128 VDAVPDKNSADVVNDNG-NTSAD-AVDVPSKM 157
++ V D V++D N S AVD+P M
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,371,195
Number of Sequences: 539616
Number of extensions: 2885011
Number of successful extensions: 7087
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 6919
Number of HSP's gapped (non-prelim): 257
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)