Query 030466
Match_columns 177
No_of_seqs 110 out of 172
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 14:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07847 DUF1637: Protein of u 100.0 1.1E-38 2.4E-43 263.3 11.4 130 3-136 15-148 (200)
2 KOG4281 Uncharacterized conser 100.0 3.8E-35 8.3E-40 249.5 9.6 132 2-137 46-180 (236)
3 PF05995 CDO_I: Cysteine dioxy 98.6 3.8E-07 8.2E-12 73.1 9.7 105 17-135 63-168 (175)
4 COG1917 Uncharacterized conser 96.7 0.0031 6.8E-08 46.9 4.7 40 25-64 39-78 (131)
5 TIGR03404 bicupin_oxalic bicup 96.3 0.014 3E-07 52.4 7.3 104 26-151 242-356 (367)
6 TIGR01479 GMP_PMI mannose-1-ph 96.0 0.046 1E-06 49.8 9.2 96 18-140 365-460 (468)
7 TIGR02451 anti_sig_ChrR anti-s 95.9 0.023 4.9E-07 47.3 6.1 46 16-62 113-159 (215)
8 PF07883 Cupin_2: Cupin domain 95.6 0.0063 1.4E-07 39.7 1.5 70 32-128 1-70 (71)
9 PF12973 Cupin_7: ChrR Cupin-l 95.2 0.025 5.5E-07 40.2 3.6 51 14-65 6-59 (91)
10 PRK13290 ectC L-ectoine syntha 94.7 0.14 3.1E-06 39.7 6.8 87 16-132 20-110 (125)
11 smart00835 Cupin_1 Cupin. This 94.6 0.059 1.3E-06 41.1 4.4 44 22-65 23-66 (146)
12 COG0662 {ManC} Mannose-6-phosp 93.5 0.84 1.8E-05 34.6 8.7 98 16-140 23-120 (127)
13 TIGR03214 ura-cupin putative a 86.3 1.2 2.6E-05 38.0 4.4 36 28-64 178-214 (260)
14 TIGR03404 bicupin_oxalic bicup 84.9 1.5 3.2E-05 39.6 4.5 40 27-67 65-104 (367)
15 PRK15460 cpsB mannose-1-phosph 83.4 8.9 0.00019 36.0 9.1 96 18-140 374-469 (478)
16 PF00190 Cupin_1: Cupin; Inte 82.1 3.1 6.7E-05 31.6 4.7 90 25-130 30-119 (144)
17 PRK04190 glucose-6-phosphate i 81.5 30 0.00065 28.9 10.8 106 14-141 49-166 (191)
18 COG5553 Predicted metal-depend 79.6 10 0.00022 32.7 7.3 52 25-77 69-120 (191)
19 KOG4064 Cysteine dioxygenase C 79.4 1 2.2E-05 38.5 1.3 118 25-156 68-186 (196)
20 PF01050 MannoseP_isomer: Mann 79.2 18 0.0004 29.0 8.4 95 19-140 53-147 (151)
21 PF11699 CENP-C_C: Mif2/CENP-C 76.7 5.4 0.00012 29.6 4.4 47 19-65 2-48 (85)
22 COG2140 Thermophilic glucose-6 70.0 46 0.001 28.9 9.0 107 30-158 81-200 (209)
23 PRK09943 DNA-binding transcrip 69.7 29 0.00064 27.4 7.3 89 17-133 92-184 (185)
24 PRK11171 hypothetical protein; 67.3 10 0.00023 32.4 4.6 38 28-65 183-220 (266)
25 PRK11171 hypothetical protein; 51.4 37 0.0008 29.1 5.3 39 26-64 58-97 (266)
26 PLN00212 glutelin; Provisional 51.0 22 0.00047 34.1 4.1 42 26-67 345-386 (493)
27 TIGR03037 anthran_nbaC 3-hydro 50.9 43 0.00092 27.8 5.4 51 15-67 15-65 (159)
28 PRK10371 DNA-binding transcrip 41.5 42 0.00091 28.6 4.1 39 26-65 23-61 (302)
29 PF11142 DUF2917: Protein of u 39.9 27 0.00059 24.3 2.3 31 33-65 1-31 (63)
30 PRK13264 3-hydroxyanthranilate 39.7 89 0.0019 26.4 5.7 52 14-67 20-71 (177)
31 PF05523 FdtA: WxcM-like, C-te 38.5 68 0.0015 24.8 4.5 83 36-142 40-122 (131)
32 cd06216 FNR_iron_sulfur_bindin 38.2 2E+02 0.0043 23.1 7.3 67 4-72 6-73 (243)
33 PF13759 2OG-FeII_Oxy_5: Putat 35.5 27 0.00059 25.1 1.8 19 32-50 2-21 (101)
34 PRK12335 tellurite resistance 34.3 29 0.00063 29.3 2.0 30 38-67 20-50 (287)
35 PF00970 FAD_binding_6: Oxidor 33.2 1.6E+02 0.0035 20.2 6.4 45 27-72 12-57 (99)
36 TIGR03214 ura-cupin putative a 29.5 1.2E+02 0.0025 26.0 4.9 38 27-64 56-94 (260)
37 KOG1280 Uncharacterized conser 28.8 16 0.00034 34.4 -0.4 45 23-67 26-76 (381)
38 PRK10684 HCP oxidoreductase, N 26.7 3.5E+02 0.0076 23.2 7.3 30 43-72 34-63 (332)
39 PF13621 Cupin_8: Cupin-like d 20.6 98 0.0021 24.2 2.6 41 29-70 131-171 (251)
No 1
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=1.1e-38 Score=263.34 Aligned_cols=130 Identities=36% Similarity=0.696 Sum_probs=105.8
Q ss_pred CCcccc---ccCCCCCCCeEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCccc
Q 030466 3 EQPYFR---RQAGRKYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSAD 79 (177)
Q Consensus 3 e~~~fr---~~~~~~~~pItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~ 79 (177)
++.+++ .+..+..++|+|++||||++|||||||||+|++|||||||+||||||||||+++|+||||+++..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~y~~iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~ 94 (200)
T PF07847_consen 15 SLQFFRAPSNRSSPSSPPITYMHIYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQ 94 (200)
T ss_pred ccccccccccccCCCCCCeEEEEEEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEcccccccccccccc
Confidence 455664 45567899999999999999999999999999999999999999999999999999999999544333222
Q ss_pred ccCCCCceeeeEecc-cCCCccceEeeccCCCcceeeecccCCcceeeeeecCCCCCC
Q 030466 80 AAGVPGKTSAVAVDA-IPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNS 136 (177)
Q Consensus 80 ~~~~~g~~~~v~vd~-~p~~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~~~~ 136 (177)
...+++++.+|. ......+++|.|..|+-||++.++. |+..|+||++|||...
T Consensus 95 ---~~~~~a~~~~d~~~~a~~~~~vL~P~~ggNiH~f~a~~-~p~AflDIL~PPY~~~ 148 (200)
T PF07847_consen 95 ---RQPRLARLVVDGEMTAPSDTCVLYPTSGGNIHEFTALT-GPCAFLDILAPPYDPD 148 (200)
T ss_pred ---ccceeeEEEecceecCCCCCeEEccCCCCeeEEEEeCC-CCeEEEEEccCCCCCC
Confidence 223455554554 3333346788999999999999999 9999999999999843
No 2
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.8e-35 Score=249.49 Aligned_cols=132 Identities=41% Similarity=0.686 Sum_probs=103.4
Q ss_pred CCCcccccc--CCCCCCCeEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCC-CCCcc
Q 030466 2 PEQPYFRRQ--AGRKYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVP-SDTSA 78 (177)
Q Consensus 2 ~e~~~fr~~--~~~~~~pItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~-~~~~~ 78 (177)
+++++||+. +.++.++|+|+|||||++|||||||||+|++||||||||||||||+|||+|||+||||+++.. ..++.
T Consensus 46 ~~~~~~~~~~~~~rn~ppitYlhi~EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp 125 (236)
T KOG4281|consen 46 PEMQYFRPSGVSERNLPPITYLHIHECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDP 125 (236)
T ss_pred hhhhhccCCCCCcCCCCCceEEEEEecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCC
Confidence 578899862 235568999999999999999999999999999999999999999999999999999996432 22222
Q ss_pred cccCCCCceeeeEecccCCCccceEeeccCCCcceeeecccCCcceeeeeecCCCCCCc
Q 030466 79 DAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSA 137 (177)
Q Consensus 79 ~~~~~~g~~~~v~vd~~p~~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~~~~~ 137 (177)
.+..|++++.+.+.-+.+|. ++.+=+..|+-+|-.- . -++.-++|+++|||.++.
T Consensus 126 ~q~~r~akl~~d~~~T~~s~--~~~LyP~~ggn~h~f~-a-~t~cAvlDILsPPY~~~~ 180 (236)
T KOG4281|consen 126 HQPVRPAKLVSDKEFTAASP--ASTLYPKTGGNHHCFT-A-ITPCAVLDILSPPYDSDH 180 (236)
T ss_pred CcceeeeeEeccceecCCCC--CcEeeecCCCcEeeee-e-ccceeEEeeccCCCCCCC
Confidence 23345555555555555555 5678899999877433 3 348999999999999865
No 3
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=98.60 E-value=3.8e-07 Score=73.11 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=68.8
Q ss_pred CeEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccC
Q 030466 17 AITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIP 96 (177)
Q Consensus 17 pItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p 96 (177)
.-++--||.++.|++-++|-+||..-|+|||.+..++.+||.|.++-+-|.|... .. +.+........-
T Consensus 63 ~Y~r~ll~~~~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~----~~-------~~~~~~~~~~~~ 131 (175)
T PF05995_consen 63 RYTRNLLYRDERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDD----GG-------APLELVGRERLL 131 (175)
T ss_dssp SSEEEEEEGGCT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTS----SS--------EEEECEEEEEE
T ss_pred CCeEEEEecCCCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCc----cc-------CcccccCceEec
Confidence 4567778999999999999999999999999999999999999999999999876 11 112222122111
Q ss_pred CCccceEeeccCCCcceeeeccc-CCcceeeeeecCCCCC
Q 030466 97 GETSAAAVDIIPGKPLAAMVDVI-PGKPLAAAVDAVPDKN 135 (177)
Q Consensus 97 ~~ts~~~~~~~~g~~l~~~v~~~-~g~~l~~~v~a~p~~~ 135 (177)
..-.+..+| + .-+|.|-|.+ +.+++-+-|-+||+..
T Consensus 132 ~~g~~~~~~--~-~~iH~v~n~s~~~~avSLHvYspPl~~ 168 (175)
T PF05995_consen 132 PGGVTYIFD--P-HGIHRVENPSGDEPAVSLHVYSPPLEQ 168 (175)
T ss_dssp TTTEEEEBT--T-TBEEEEEES-SSS-EEEEEEEES--SE
T ss_pred CCCeEEecC--C-CCeEEeccCCCCCCEEEEEEcCCChhh
Confidence 111122233 2 3389998887 9999999999999753
No 4
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.68 E-value=0.0031 Score=46.88 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=36.9
Q ss_pred ccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeE
Q 030466 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIK 64 (177)
Q Consensus 25 E~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~Vk 64 (177)
+...+.+..|.+.+|+++|.|.||......-||.|.+++.
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~ 78 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQ 78 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEE
Confidence 5788999999999999999999998889999999999865
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=96.33 E-value=0.014 Score=52.38 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=70.1
Q ss_pred cCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCCCccceEee
Q 030466 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVD 105 (177)
Q Consensus 26 ~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~~ts~~~~~ 105 (177)
...++++.+.|+||+..++|.||+..=|.-||.|++++..+|--. .... .+-.+++ +-
T Consensus 242 ~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g-----~~~~------------~~l~~GD-----~~ 299 (367)
T TIGR03404 242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGG-----NART------------FDYQAGD-----VG 299 (367)
T ss_pred cceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCC-----cEEE------------EEECCCC-----EE
Confidence 346899999999999999999999999999999999988665210 0000 1112222 23
Q ss_pred ccCCCcceeeecccCCcceeeeeecCCC-----------CCCcccccCCCCcccccc
Q 030466 106 IIPGKPLAAMVDVIPGKPLAAAVDAVPD-----------KNSADVVNDNGNTSADAV 151 (177)
Q Consensus 106 ~~~g~~l~~~v~~~~g~~l~~~v~a~p~-----------~~~~d~~~~~~~~~~~~~ 151 (177)
.+|.+..|.|.|..+.+.-|+.+.-.|. +.|.|++..+=+.+.+++
T Consensus 300 ~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~~p~~vl~~~~~~~~~~~ 356 (367)
T TIGR03404 300 YVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLALTPPQLVAAHLNLDDEVI 356 (367)
T ss_pred EECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhhCCHHHHHHHhCcCHHHH
Confidence 4577888888888888887877754443 244555555555444333
No 6
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.03 E-value=0.046 Score=49.82 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=71.2
Q ss_pred eEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCC
Q 030466 18 ITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPG 97 (177)
Q Consensus 18 ItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~ 97 (177)
-+|..+++.+.|.+..+.++||+.+++|-|+.=.-..-||.|++.+.- + . ... .--++
T Consensus 365 G~~~~~~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-d---g----~~~--------------~l~~G 422 (468)
T TIGR01479 365 GKYDSIDQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-G---D----ETL--------------LLTEN 422 (468)
T ss_pred CceEEEecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE-C---C----EEE--------------EecCC
Confidence 356678999999999999999999999888755555589999999862 1 1 000 00111
Q ss_pred CccceEeeccCCCcceeeecccCCcceeeeeecCCCCCCcccc
Q 030466 98 ETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVV 140 (177)
Q Consensus 98 ~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~~~~~d~~ 140 (177)
+. . .+|++.-|.+.|..+.+.-++.|..++|-..-|++
T Consensus 423 Ds--i---~ip~~~~H~~~N~g~~~~~~i~v~~~~~~~~~d~v 460 (468)
T TIGR01479 423 ES--T---YIPLGVIHRLENPGKIPLELIEVQSGSYLGEDDII 460 (468)
T ss_pred CE--E---EECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEE
Confidence 11 0 25778889999999999999999998887777765
No 7
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=95.91 E-value=0.023 Score=47.32 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=40.2
Q ss_pred CCeEEEEeec-cCCeEEEEEecCCCccccCCCCCCCeeeeeeeeccee
Q 030466 16 PAITYQHIFE-CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMH 62 (177)
Q Consensus 16 ~pItY~~IyE-~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~ 62 (177)
+.+..+.++. ++..+++++.+++|..+|.|.|.|.- +.-||.|+..
T Consensus 113 ~gv~~~~L~~~~~~~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~ 159 (215)
T TIGR02451 113 GRVSRVTLPIDDGNARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAFS 159 (215)
T ss_pred CCeEEEeccCCCCCcEEEEEEECCCCccCCCcCCCcE-EEEEEEEEEE
Confidence 5688888987 55789999999999999999999998 7789999963
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=95.64 E-value=0.0063 Score=39.68 Aligned_cols=70 Identities=29% Similarity=0.393 Sum_probs=50.3
Q ss_pred EEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCCCccceEeeccCCCc
Q 030466 32 GIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKP 111 (177)
Q Consensus 32 gIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~~ts~~~~~~~~g~~ 111 (177)
+++-++||..+|.|-|+....+.-||.|++.+. .+ +... .-.+|-+. .++.+.
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-------~~~~--~l~~Gd~~-----------------~i~~~~ 53 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-------GERV--ELKPGDAI-----------------YIPPGV 53 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-------TEEE--EEETTEEE-----------------EEETTS
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-------cEEe--EccCCEEE-----------------EECCCC
Confidence 567899999999999999999999999999987 44 1110 00011111 345667
Q ss_pred ceeeecccCCcceeeee
Q 030466 112 LAAMVDVIPGKPLAAAV 128 (177)
Q Consensus 112 l~~~v~~~~g~~l~~~v 128 (177)
.|.+.|..+.+..++.|
T Consensus 54 ~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 54 PHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEEEESSSEEEEEEE
T ss_pred eEEEEECCCCCEEEEEE
Confidence 88888988888777765
No 9
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=95.23 E-value=0.025 Score=40.24 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=40.2
Q ss_pred CCCCeEEEEeeccC---CeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEE
Q 030466 14 KYPAITYQHIFECE---KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (177)
Q Consensus 14 ~~~pItY~~IyE~e---~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkS 65 (177)
..+.|..+.|+.++ ...+.+.-+.||+.+|.|.|++---+ =||.|++....
T Consensus 6 ~~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~-~VLeG~~~d~~ 59 (91)
T PF12973_consen 6 PRPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEI-LVLEGELSDGD 59 (91)
T ss_dssp CSTTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEE-EEEECEEEETT
T ss_pred CCCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEE-EEEEEEEEECC
Confidence 46779999999775 46889999999999999999985444 78999988543
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=94.72 E-value=0.14 Score=39.65 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=57.4
Q ss_pred CCeEEEEeeccCCe--EEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEe--ecccCCCCCCcccccCCCCceeeeE
Q 030466 16 PAITYQHIFECEKF--SMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSY--DWVVDVPSDTSADAAGVPGKTSAVA 91 (177)
Q Consensus 16 ~pItY~~IyE~e~F--SIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSY--Dwvd~~~~~~~~~~~~~~g~~~~v~ 91 (177)
..++..-+++.+.. ++-.|.|+||+.+|.|-|... -+.-||.|++.+..+ +-...-...++
T Consensus 20 ~~~~krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~-E~~yVL~G~~~~~~i~~g~~~~L~aGD~-------------- 84 (125)
T PRK13290 20 NWTSRRLLLKDDGMGFSFHETTIYAGTETHLHYKNHL-EAVYCIEGEGEVEDLATGEVHPIRPGTM-------------- 84 (125)
T ss_pred CceEEEEEEecCCCCEEEEEEEECCCCcccceeCCCE-EEEEEEeCEEEEEEcCCCEEEEeCCCeE--------------
Confidence 34566666655544 555579999999999999876 599999999998733 11111111111
Q ss_pred ecccCCCccceEeeccCCCcceeeecccCCcceeeeeecCC
Q 030466 92 VDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVP 132 (177)
Q Consensus 92 vd~~p~~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p 132 (177)
. .++++.-|.+.|. .+.-++.+..||
T Consensus 85 ----------i---~~~~~~~H~~~N~--e~~~~l~v~tP~ 110 (125)
T PRK13290 85 ----------Y---ALDKHDRHYLRAG--EDMRLVCVFNPP 110 (125)
T ss_pred ----------E---EECCCCcEEEEcC--CCEEEEEEECCC
Confidence 0 2456677888886 666777777766
No 11
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=94.63 E-value=0.059 Score=41.10 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=39.4
Q ss_pred EeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEE
Q 030466 22 HIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (177)
Q Consensus 22 ~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkS 65 (177)
..+++..+++..+.+++|...+.|-||+..-+..||.|.+.+..
T Consensus 23 ~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~ 66 (146)
T smart00835 23 PALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV 66 (146)
T ss_pred cccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE
Confidence 55778889999999999999999999987788899999999873
No 12
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.46 E-value=0.84 Score=34.56 Aligned_cols=98 Identities=20% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCeEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEeccc
Q 030466 16 PAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAI 95 (177)
Q Consensus 16 ~pItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~ 95 (177)
+.-.|-.++..+.++++.+.+++|..++||-|..=--+-.||.|...+.-=+-.. .| -
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~------------------~v----~ 80 (127)
T COG0662 23 PWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEV------------------EV----K 80 (127)
T ss_pred CCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEE------------------Ee----c
Confidence 3455666678899999999999999999999999778889999998875211100 00 0
Q ss_pred CCCccceEeeccCCCcceeeecccCCcceeeeeecCCCCCCcccc
Q 030466 96 PGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVV 140 (177)
Q Consensus 96 p~~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~~~~~d~~ 140 (177)
+++ +. .+|=+.-|-+.|.-..+-.++.|.+++|.--.|.+
T Consensus 81 ~gd--~~---~iP~g~~H~~~N~G~~~L~liei~~p~~~~e~~~~ 120 (127)
T COG0662 81 AGD--SV---YIPAGTPHRVRNTGKIPLVLIEVQSPPYLGEDDIV 120 (127)
T ss_pred CCC--EE---EECCCCcEEEEcCCCcceEEEEEecCCcCCCceEE
Confidence 111 01 23557789999998888889999999998766654
No 13
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=86.25 E-value=1.2 Score=38.00 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCccccC-CCCCCCeeeeeeeecceeeE
Q 030466 28 KFSMGIFCLPPSGVIPL-HNHPGMTVFSKLLFGTMHIK 64 (177)
Q Consensus 28 ~FSIgIF~LppG~~IPL-HDHPgMtVlsKVLyGsl~Vk 64 (177)
+|.|.+|.|+||+.||. |-|+.++++ -||.|+..++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~-yiL~G~G~~~ 214 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGL-YVLEGKGVYN 214 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEE-EEEeceEEEE
Confidence 88999999999999996 778866777 8888888754
No 14
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=84.95 E-value=1.5 Score=39.62 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=35.0
Q ss_pred CCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEee
Q 030466 27 EKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (177)
Q Consensus 27 e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYD 67 (177)
..+++...-|.+|+.+|+|.|.+.. +.-||.|++++...|
T Consensus 65 ~~ls~~~~~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 65 TAIAGVNMRLEPGAIRELHWHKEAE-WAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceEEEEcCCCCCCcccCCCce-EEEEEeeEEEEEEEc
Confidence 3577788899999999999999986 899999999988764
No 15
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=83.44 E-value=8.9 Score=36.03 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=69.2
Q ss_pred eEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCC
Q 030466 18 ITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPG 97 (177)
Q Consensus 18 ItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~ 97 (177)
-+|..+-....|.+-...++||+.+++|-|..-.=..-||.|.+.+.-=+-...- -|+
T Consensus 374 G~~~~l~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~~L----------------------~~G 431 (478)
T PRK15460 374 GKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLL----------------------GEN 431 (478)
T ss_pred CceEeecCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEEEe----------------------cCC
Confidence 3455667788999999999999999888776655555599999987632211111 111
Q ss_pred CccceEeeccCCCcceeeecccCCcceeeeeecCCCCCCcccc
Q 030466 98 ETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVV 140 (177)
Q Consensus 98 ~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~~~~~d~~ 140 (177)
++= .+|.+..|.+-|..+.+.-++.|..++|-..-|+|
T Consensus 432 DSi-----~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~edDiv 469 (478)
T PRK15460 432 ESI-----YIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVV 469 (478)
T ss_pred CEE-----EECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEE
Confidence 110 25677889999999999999999999998777776
No 16
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=82.07 E-value=3.1 Score=31.61 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=58.0
Q ss_pred ccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCCCccceEe
Q 030466 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAV 104 (177)
Q Consensus 25 E~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~~ts~~~~ 104 (177)
.+..+.+.+..|.||+.++.|-| .-+-+.-|+.|+.++.-.+.-... .. . +...-.++-.+|+ +
T Consensus 30 ~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~---~~---~----~~~~~~v~l~~Gd-----v 93 (144)
T PF00190_consen 30 GLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQ---EE---F----RDFSQKVRLKAGD-----V 93 (144)
T ss_dssp HHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSS---SE---E----EEEEEEEEEETTE-----E
T ss_pred cccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCcc---cc---c----eeeeceeeeeccc-----c
Confidence 45667777788899999999999 999999999999997766433221 00 0 0000001222332 2
Q ss_pred eccCCCcceeeecccCCcceeeeeec
Q 030466 105 DIIPGKPLAAMVDVIPGKPLAAAVDA 130 (177)
Q Consensus 105 ~~~~g~~l~~~v~~~~g~~l~~~v~a 130 (177)
=.+|-|..|.+.|..+.+.+.+.+.-
T Consensus 94 ~~vP~G~~h~~~n~~~~~~~~~~~f~ 119 (144)
T PF00190_consen 94 FVVPAGHPHWIINDGDDEALVLIIFD 119 (144)
T ss_dssp EEE-TT-EEEEEECSSSSEEEEEEEE
T ss_pred eeeccceeEEEEcCCCCCCEEEEEEE
Confidence 23677889999999877777766654
No 17
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=81.51 E-value=30 Score=28.91 Aligned_cols=106 Identities=15% Similarity=0.037 Sum_probs=63.2
Q ss_pred CCCCeEEEEeecc----CCeEEEEEecCCCcc------ccCCCCCCC--eeeeeeeecceeeEEeecccCCCCCCccccc
Q 030466 14 KYPAITYQHIFEC----EKFSMGIFCLPPSGV------IPLHNHPGM--TVFSKLLFGTMHIKSYDWVVDVPSDTSADAA 81 (177)
Q Consensus 14 ~~~pItY~~IyE~----e~FSIgIF~LppG~~------IPLHDHPgM--tVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~ 81 (177)
....+.++.-+.. ..+.+++-.|+||.+ -+-|-|+.. .=+.-||.|...+.- +.. +.+...
T Consensus 49 ~d~~~Y~v~~~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l----~~~-~G~~~~-- 121 (191)
T PRK04190 49 EDTVVYEVYAIEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLL----QDP-EGEARW-- 121 (191)
T ss_pred CCceEEEEEEecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEE----ecC-CCcEEE--
Confidence 4456776644432 679999999999997 566888743 466677888877542 111 101000
Q ss_pred CCCCceeeeEecccCCCccceEeeccCCCcceeeecccCCcceeeeeecCCCCCCccccc
Q 030466 82 GVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVVN 141 (177)
Q Consensus 82 ~~~g~~~~v~vd~~p~~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~~~~~d~~~ 141 (177)
....|++ +=.+|.+..|.++|..+.+-.|+.+...=....-+-+.
T Consensus 122 ----------~~v~pGd-----~v~IPpg~~H~~iN~G~epl~fl~v~p~~~~~dY~~i~ 166 (191)
T PRK04190 122 ----------IEMEPGT-----VVYVPPYWAHRSVNTGDEPLVFLACYPADAGHDYGTIA 166 (191)
T ss_pred ----------EEECCCC-----EEEECCCCcEEeEECCCCCEEEEEEEcCCcccccHHHH
Confidence 1111221 11456788999999998888888765443333333333
No 18
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=79.56 E-value=10 Score=32.69 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=41.3
Q ss_pred ccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCc
Q 030466 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTS 77 (177)
Q Consensus 25 E~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~ 77 (177)
+...|||--|.+.||..-|.||| +|-++.-+|.|.=+=.-|-........++
T Consensus 69 ~~gfltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~ 120 (191)
T COG5553 69 PQGFLTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPE 120 (191)
T ss_pred ccccEEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcc
Confidence 44569999999999999999999 79999999999887666666655444443
No 19
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=79.36 E-value=1 Score=38.54 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=77.2
Q ss_pred ccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCCCccceEe
Q 030466 25 ECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAV 104 (177)
Q Consensus 25 E~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~~ts~~~~ 104 (177)
.+..|.+-|.|--+|---..|||-+-+-|.|+|.|.++=+-|-|-+......-.+. .+.-++..||-+
T Consensus 68 GNGKfNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ks~e~v~is------------E~~~~~N~vaYi 135 (196)
T KOG4064|consen 68 GNGKFNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDRKSHEPVDIS------------EKTYGMNGVAYI 135 (196)
T ss_pred CCCeEeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCcccCcccccc------------ceeeeccceEEe
Confidence 36789999999999999999999999999999999999999999855221111100 011223345544
Q ss_pred eccCCCcceeeecccC-CcceeeeeecCCCCCCcccccCCCCccccccccCCC
Q 030466 105 DIIPGKPLAAMVDVIP-GKPLAAAVDAVPDKNSADVVNDNGNTSADAVDVPSK 156 (177)
Q Consensus 105 ~~~~g~~l~~~v~~~~-g~~l~~~v~a~p~~~~~d~~~~~~~~~~~~~~~~~~ 156 (177)
.---| ||.+-|-+- .++.-+-.-.||+..---|-...|....-.|..-||
T Consensus 136 ND~lG--LHRvEN~SHs~~aVSLHLY~PPfdTC~aFd~rtgkKt~~tvTF~SK 186 (196)
T KOG4064|consen 136 NDELG--LHRVENLSHSNGAVSLHLYIPPFDTCNAFDERTGKKTQCTVTFYSK 186 (196)
T ss_pred ccccc--ceeccccccCCCceEEEEecCCcchhhhhhhccCCcceEEEEEehh
Confidence 33333 777777654 356777888888876554544445544434444443
No 20
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=79.22 E-value=18 Score=29.01 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=66.4
Q ss_pred EEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCCC
Q 030466 19 TYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGE 98 (177)
Q Consensus 19 tY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~~ 98 (177)
+|-.|.+.+.|.+-...+.||..|+||-|..=.=.--|+.|...|+-=+-...-..+++
T Consensus 53 ~~~~l~~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~s--------------------- 111 (151)
T PF01050_consen 53 SYEVLDEGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDS--------------------- 111 (151)
T ss_pred EEEEEEccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCE---------------------
Confidence 67778889999999999999999999999998888889999999875211111111111
Q ss_pred ccceEeeccCCCcceeeecccCCcceeeeeecCCCCCCcccc
Q 030466 99 TSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPDKNSADVV 140 (177)
Q Consensus 99 ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~~~~~d~~ 140 (177)
+ -+|-|..|.|-|....+-.++.|-...|-+.-|++
T Consensus 112 -----v-~Ip~g~~H~i~n~g~~~L~~IEVq~G~~l~edDI~ 147 (151)
T PF01050_consen 112 -----V-YIPRGAKHRIENPGKTPLEIIEVQTGEYLGEDDIV 147 (151)
T ss_pred -----E-EECCCCEEEEECCCCcCcEEEEEecCCCCCccceE
Confidence 1 13455667777766666666677666665555554
No 21
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=76.71 E-value=5.4 Score=29.59 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=37.3
Q ss_pred EEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEE
Q 030466 19 TYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (177)
Q Consensus 19 tY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkS 65 (177)
++..++....|+-|+..||||+.=|+=+==.|+...-|++|.+.|+-
T Consensus 2 ~~~k~f~~~~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti 48 (85)
T PF11699_consen 2 KFAKLFDTPFFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI 48 (85)
T ss_dssp EEEEE--TTS-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE
T ss_pred EEEEEcCCCCceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE
Confidence 45677777899999999999999999999999999999999999875
No 22
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=69.99 E-value=46 Score=28.91 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=74.5
Q ss_pred EEEEEecCCCccccCCCCCCCee--eeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCCCccceEeecc
Q 030466 30 SMGIFCLPPSGVIPLHNHPGMTV--FSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDII 107 (177)
Q Consensus 30 SIgIF~LppG~~IPLHDHPgMtV--lsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~~ts~~~~~~~ 107 (177)
.=+.+.+.+|+.=-||.||+--- +.-+|.|.....-++- +|.+....+ -+++ +...
T Consensus 81 ~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~---------------~G~~~v~~~--~~Gd-----~iyV 138 (209)
T COG2140 81 AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP---------------EGEARVIAV--RAGD-----VIYV 138 (209)
T ss_pred cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC---------------CCcEEEEEe--cCCc-----EEEe
Confidence 33577899999999999999999 9999999988654431 122222222 2222 2355
Q ss_pred CCCcceeeecccCCcceeeeeecC-----------CCCCCcccccCCCCccccccccCCCCC
Q 030466 108 PGKPLAAMVDVIPGKPLAAAVDAV-----------PDKNSADVVNDNGNTSADAVDVPSKMS 158 (177)
Q Consensus 108 ~g~~l~~~v~~~~g~~l~~~v~a~-----------p~~~~~d~~~~~~~~~~~~~~~~~~~~ 158 (177)
|=.--|.++|..++|-.|+.|--. =-..++=+++++.|.+-.-+|+|.+--
T Consensus 139 Pp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~D~p~~~~ 200 (209)
T COG2140 139 PPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGGMPPVLVENGLNKNPKYVDVPRIKF 200 (209)
T ss_pred CCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhccCCceeeccccccCcccccCccccc
Confidence 667789999999998887766433 234556677888888888999997643
No 23
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=69.74 E-value=29 Score=27.37 Aligned_cols=89 Identities=9% Similarity=0.135 Sum_probs=54.9
Q ss_pred CeEEEEeec-cCCeEEEEE--ecCCCccc-cCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEe
Q 030466 17 AITYQHIFE-CEKFSMGIF--CLPPSGVI-PLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAV 92 (177)
Q Consensus 17 pItY~~IyE-~e~FSIgIF--~LppG~~I-PLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~v 92 (177)
.++|.-+.. +..-.+.++ .++||... +.|-|++ .=+.-||.|.+.+.-=+-...-
T Consensus 92 g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~~~~~~l-------------------- 150 (185)
T PRK09943 92 GVSMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTINGQDYHL-------------------- 150 (185)
T ss_pred CceEEEeccCCCCCeeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEECCEEEEe--------------------
Confidence 455555543 223334444 46778764 5888999 5666799999997542111110
Q ss_pred cccCCCccceEeeccCCCcceeeecccCCcceeeeeecCCC
Q 030466 93 DAIPGETSAAAVDIIPGKPLAAMVDVIPGKPLAAAVDAVPD 133 (177)
Q Consensus 93 d~~p~~ts~~~~~~~~g~~l~~~v~~~~g~~l~~~v~a~p~ 133 (177)
.++++ . .++++..|.+.|..+.+..++.++.||.
T Consensus 151 --~~Gd~--~---~~~~~~~H~~~n~~~~~~~~l~~~~p~~ 184 (185)
T PRK09943 151 --VAGQS--Y---AINTGIPHSFSNTSAGICRIISAHTPTT 184 (185)
T ss_pred --cCCCE--E---EEcCCCCeeeeCCCCCCeEEEEEeCCCC
Confidence 11111 1 3567788999998888888888887663
No 24
>PRK11171 hypothetical protein; Provisional
Probab=67.31 E-value=10 Score=32.36 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEE
Q 030466 28 KFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (177)
Q Consensus 28 ~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkS 65 (177)
.|.|-.|.|+||+.|+.|=|-++.=..-||.|++.+.-
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~ 220 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL 220 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE
Confidence 35788899999999999656666677789999999753
No 25
>PRK11171 hypothetical protein; Provisional
Probab=51.39 E-value=37 Score=29.06 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=33.5
Q ss_pred cCCeEEEEEecCCCccccCCCCC-CCeeeeeeeecceeeE
Q 030466 26 CEKFSMGIFCLPPSGVIPLHNHP-GMTVFSKLLFGTMHIK 64 (177)
Q Consensus 26 ~e~FSIgIF~LppG~~IPLHDHP-gMtVlsKVLyGsl~Vk 64 (177)
...|.+.+..++||+....|-|+ +.--+.-||.|.+.++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~ 97 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT 97 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE
Confidence 57799999999999998888766 7677888999999986
No 26
>PLN00212 glutelin; Provisional
Probab=50.97 E-value=22 Score=34.07 Aligned_cols=42 Identities=7% Similarity=-0.003 Sum_probs=36.9
Q ss_pred cCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEee
Q 030466 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (177)
Q Consensus 26 ~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYD 67 (177)
.-.+++..--|.+|++++-|.||.-|-+.-|+-|+++|.--+
T Consensus 345 ~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~ 386 (493)
T PLN00212 345 LIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVS 386 (493)
T ss_pred ccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEc
Confidence 455777888999999999999999999999999999988543
No 27
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=50.91 E-value=43 Score=27.81 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=41.0
Q ss_pred CCCeEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEee
Q 030466 15 YPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (177)
Q Consensus 15 ~~pItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYD 67 (177)
.+|+....||.+..|.+.++ =-+|++-..|.|+. --|.-+|.|++.|+--+
T Consensus 15 ~pPv~n~~l~~~~~~~v~~v-gGpn~R~d~H~~~t-dE~FyqleG~~~l~v~d 65 (159)
T TIGR03037 15 KPPVGNQQIWQDSEFMVTVV-GGPNARTDFHDDPG-EEFFYQLKGEMYLKVTE 65 (159)
T ss_pred CCCCCceEeecCCcEEEEEe-CCCCCCcccccCCC-ceEEEEEcceEEEEEEc
Confidence 56799999999888877653 37888899999995 66777899999997443
No 28
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=41.50 E-value=42 Score=28.63 Aligned_cols=39 Identities=21% Similarity=0.092 Sum_probs=32.7
Q ss_pred cCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEE
Q 030466 26 CEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (177)
Q Consensus 26 ~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkS 65 (177)
-+..-+.|+.-|+..+.|+|.|..+-+. -++.|++.+.-
T Consensus 23 ~~~~~~~~~~~~~~~m~~~HwH~e~Ei~-yv~~G~~~~~i 61 (302)
T PRK10371 23 SEYQRLEIEFRPPHIMPTSHWHGQVEVN-VPFDGDVEYLI 61 (302)
T ss_pred cCCceeEEEeeCCCCCCCCCccccEEEE-EecCCcEEEEE
Confidence 3455678899999999999999999887 78899988765
No 29
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=39.88 E-value=27 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=27.4
Q ss_pred EEecCCCccccCCCCCCCeeeeeeeecceeeEE
Q 030466 33 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKS 65 (177)
Q Consensus 33 IF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkS 65 (177)
.|.|.+|..+.|+..-++. .+|..|.+=|+-
T Consensus 1 ~~~L~~g~~~~lr~~~~~~--l~v~~G~vWlT~ 31 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAGQR--LRVESGRVWLTR 31 (63)
T ss_pred CEEeCCCceEEeEcCCCcE--EEEccccEEEEC
Confidence 4889999999999999988 899999887664
No 30
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=39.71 E-value=89 Score=26.45 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCCCeEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEee
Q 030466 14 KYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYD 67 (177)
Q Consensus 14 ~~~pItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYD 67 (177)
-.+|+.-..||.+..|.+-+. ==+|....+|.||+ --|.-+|.|++.|+--|
T Consensus 20 l~pPv~n~~l~~~~d~~Vmvv-gGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d 71 (177)
T PRK13264 20 LKPPVGNKQIWQDSDFIVMVV-GGPNARTDFHYDPG-EEFFYQLEGDMYLKVQE 71 (177)
T ss_pred hCCCCCCeeeEcCCCEEEEEE-ccCCcccccccCCC-ceEEEEECCeEEEEEEc
Confidence 357799999999877776552 26788999999998 45666799999988765
No 31
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=38.52 E-value=68 Score=24.78 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=43.0
Q ss_pred cCCCccccCCCCCCCeeeeeeeecceeeEEeecccCCCCCCcccccCCCCceeeeEecccCCCccceEeeccCCCcceee
Q 030466 36 LPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDVPSDTSADAAGVPGKTSAVAVDAIPGETSAAAVDIIPGKPLAAM 115 (177)
Q Consensus 36 LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd~~~~~~~~~~~~~~g~~~~v~vd~~p~~ts~~~~~~~~g~~l~~~ 115 (177)
.|+|.+=-.|-|..++=+.=+|.|+.+|..+|+... ....+++ ++ ..| .+|.++.|+|
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~----------------~~~~L~~----~~-~~L-~Ippg~w~~~ 97 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE----------------EEFILDE----PN-KGL-YIPPGVWHGI 97 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E----------------EEEEE------TT-EEE-EE-TT-EEEE
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCCCc----------------EEEEECC----CC-eEE-EECCchhhHh
Confidence 678888899999999999999999999998776533 1111111 11 222 3678899999
Q ss_pred ecccCCcceeeeeecCCCCCCcccccC
Q 030466 116 VDVIPGKPLAAAVDAVPDKNSADVVND 142 (177)
Q Consensus 116 v~~~~g~~l~~~v~a~p~~~~~d~~~~ 142 (177)
-+.+++ +. +-|.|-=..++.|.+.|
T Consensus 98 ~~~s~~-sv-lLv~as~~yd~~Dyi~d 122 (131)
T PF05523_consen 98 KNFSED-SV-LLVLASEPYDEEDYIRD 122 (131)
T ss_dssp E---TT--E-EEEEESS---GGGEE--
T ss_pred hccCCC-cE-EEEEcCCCCChhhcccC
Confidence 999999 33 33566666666666544
No 32
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=38.16 E-value=2e+02 Score=23.10 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=40.3
Q ss_pred CccccccCCCCCCCeEEEEeeccCCeEEEEEecCCCccccCCCCCCCeeeeeee-ecceeeEEeecccCC
Q 030466 4 QPYFRRQAGRKYPAITYQHIFECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLL-FGTMHIKSYDWVVDV 72 (177)
Q Consensus 4 ~~~fr~~~~~~~~pItY~~IyE~e~FSIgIF~LppG~~IPLHDHPgMtVlsKVL-yGsl~VkSYDwvd~~ 72 (177)
++.++.+-......++...+.+...=.+.+.+-++.. .+.-.||+++..++. .|....+.|+.....
T Consensus 6 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~--~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~ 73 (243)
T cd06216 6 LELINPLWSARELRARVVAVRPETADMVTLTLRPNRG--WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSP 73 (243)
T ss_pred hhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCC--CCCcCCCceEEEEEEECCeEEEEEEeccCCC
Confidence 4455554334444566666654433223333333333 567899999999975 576677999998643
No 33
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=35.50 E-value=27 Score=25.06 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=10.1
Q ss_pred EEE-ecCCCccccCCCCCCC
Q 030466 32 GIF-CLPPSGVIPLHNHPGM 50 (177)
Q Consensus 32 gIF-~LppG~~IPLHDHPgM 50 (177)
+|+ +.++|...++|+||+=
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s 21 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNS 21 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-
T ss_pred eeEEEeCCCCccCceECCCc
Confidence 355 6689999999999885
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=34.35 E-value=29 Score=29.29 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCccccCCCC-CCCeeeeeeeecceeeEEee
Q 030466 38 PSGVIPLHNH-PGMTVFSKLLFGTMHIKSYD 67 (177)
Q Consensus 38 pG~~IPLHDH-PgMtVlsKVLyGsl~VkSYD 67 (177)
|+..+.=|+| ||--...+||.|++.+.-||
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~d 50 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELT 50 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEEC
Confidence 3455666999 89999999999999999986
No 35
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=33.23 E-value=1.6e+02 Score=20.22 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCeEEEEEecCCCccccCCCCCCCeeeeeee-ecceeeEEeecccCC
Q 030466 27 EKFSMGIFCLPPSGVIPLHNHPGMTVFSKLL-FGTMHIKSYDWVVDV 72 (177)
Q Consensus 27 e~FSIgIF~LppG~~IPLHDHPgMtVlsKVL-yGsl~VkSYDwvd~~ 72 (177)
+++..=.|-++..... ++-+||+++..++- .|....++|+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~ 57 (99)
T PF00970_consen 12 PDVKIFRFKLPDPDQK-LDFKPGQFVSVRVPINGKQVSRPYSPASSP 57 (99)
T ss_dssp SSEEEEEEEESSTTTT--SSTTT-EEEEEEEETTEEEEEEEEBCSST
T ss_pred CCeEEEEEEECCCCcc-cccCcceEEEEEEccCCcceecceeEeeec
Confidence 4444444555543332 77899999999987 466788999999665
No 36
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=29.52 E-value=1.2e+02 Score=26.00 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCccccC-CCCCCCeeeeeeeecceeeE
Q 030466 27 EKFSMGIFCLPPSGVIPL-HNHPGMTVFSKLLFGTMHIK 64 (177)
Q Consensus 27 e~FSIgIF~LppG~~IPL-HDHPgMtVlsKVLyGsl~Vk 64 (177)
..|.+-++.|+||+..+. |-|++.--+.-||.|.+.+.
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~ 94 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVT 94 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEE
Confidence 689999999999877654 45778788999999999986
No 37
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=28.85 E-value=16 Score=34.38 Aligned_cols=45 Identities=27% Similarity=0.691 Sum_probs=33.8
Q ss_pred eeccCCeEEEEEecCCCccccCC--CCCCCeeeeee----eecceeeEEee
Q 030466 23 IFECEKFSMGIFCLPPSGVIPLH--NHPGMTVFSKL----LFGTMHIKSYD 67 (177)
Q Consensus 23 IyE~e~FSIgIF~LppG~~IPLH--DHPgMtVlsKV----LyGsl~VkSYD 67 (177)
-..|.+|-+|-=|.-.|+.+|+| |||-.++++|+ .||.=-|.-|+
T Consensus 26 CL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~ 76 (381)
T KOG1280|consen 26 CLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFGGEPISHYD 76 (381)
T ss_pred eeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEecCccccccc
Confidence 34588999998899999999998 68999999885 44444444443
No 38
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=26.71 E-value=3.5e+02 Score=23.22 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=23.9
Q ss_pred cCCCCCCCeeeeeeeecceeeEEeecccCC
Q 030466 43 PLHNHPGMTVFSKLLFGTMHIKSYDWVVDV 72 (177)
Q Consensus 43 PLHDHPgMtVlsKVLyGsl~VkSYDwvd~~ 72 (177)
++.-+||+++..++-.|.-..++|+....+
T Consensus 34 ~~~f~pGQfv~l~~~~~~~~~R~ySias~p 63 (332)
T PRK10684 34 FYPYRAGQYALVSIRNSAETLRAYTLSSTP 63 (332)
T ss_pred CCCcCCCCEEEEEecCCCEeeeeecccCCC
Confidence 456889999999987666667999998654
No 39
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=20.63 E-value=98 Score=24.16 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=32.5
Q ss_pred eEEEEEecCCCccccCCCCCCCeeeeeeeecceeeEEeeccc
Q 030466 29 FSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVV 70 (177)
Q Consensus 29 FSIgIF~LppG~~IPLHDHPgMtVlsKVLyGsl~VkSYDwvd 70 (177)
-...+|+=++|+.-|||-.+ +..+.=+|.|+=++.=|..-+
T Consensus 131 ~~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~ 171 (251)
T PF13621_consen 131 QSSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDD 171 (251)
T ss_dssp CEEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGG
T ss_pred cccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCcc
Confidence 46789999999999999988 889999999998877776544
Done!