BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030467
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 57 RHLEELYNRYKDPY-LDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEF 115
+ LE+LYNRYKDP + I +DGI C+DL +DP I +L+++W +AAT CEFSKQEF
Sbjct: 4 KKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 63
Query: 116 IGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNFAFAWAK 159
+ G+ LG DS++K + +I M ELK+ +F++ Y F F +AK
Sbjct: 64 MDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAK 107
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 57 RHLEELYNRYKDPY-LDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEF 115
+ LE LY RYKDP + I VDGI C+DL +DP I +LV++W +AAT CEFS++EF
Sbjct: 4 KKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEF 63
Query: 116 IGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNFAFAWAK 159
+ G+ LG DS++K + + + ELKD KF++ Y F F +AK
Sbjct: 64 LDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFAK 107
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 73/107 (68%)
Query: 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQ 113
D + + EL+ YK+P + I +G+ L D+QVDP D+V LV++W +KA++ EFS++
Sbjct: 4 ADKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXEFSEK 63
Query: 114 EFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNFAFAWAKE 160
EF+ GL +L +DSL+K + ++S +R E++D KFR Y F F ++KE
Sbjct: 64 EFVEGLANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYSKE 110
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 64/99 (64%)
Query: 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFI 116
+ LEEL+ RYKD D IL +G+ CNDL VDP + +L+++W +AATMC+F+++EF
Sbjct: 6 QRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFF 65
Query: 117 GGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNFAF 155
G +++ DS+D R + E K E KF+++Y F F
Sbjct: 66 DGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTF 104
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTD------- 55
K + ++ ++ F S+T K + + L+ + W++ A + +Y + + + TD
Sbjct: 10 KDASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK-EIGTFTDEVSTVAH 68
Query: 56 ----TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCE-- 109
+ L +++ Y + ++ +D + +L + +D+ L ++ H+ E
Sbjct: 69 PPVYPKELTQVFEHYINN--NLFDIDSLVKFIEELGYNLEDLATLCLA-HLLGYKKLEEP 125
Query: 110 FSKQEFIGGLQSLGIDSLDKFRERISFMRAEL-KDEQKFREIYNFAF 155
+++F+ G ++ +E I + +L +D Q F +IYN+AF
Sbjct: 126 LKREDFLSTWFXQGCSTISDXQECIKTLDVKLHEDLQYFTQIYNYAF 172
>pdb|4GEW|A Chain A, Crystal Structure Of Tdp2 From C. Elegans
Length = 362
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 5 SRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46
S S+ KL +F IT E A L+ DW L+ A DVFY
Sbjct: 42 SMSDEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYG 83
>pdb|4F1I|A Chain A, Crystal Structure Of Semet Tdp2 From Caenorhabditis
Elegans
Length = 362
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 5 SRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46
S S+ KL +F IT E A L+ DW L+ A DVFY
Sbjct: 42 SXSDEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYG 83
>pdb|1V92|A Chain A, Solution Structure Of The Uba Domain From P47, A Major
Cofactor Of The Aaa Atpase P97
Length = 46
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 4 LSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFY 45
++ +D L++FV++TGA E A L+++ W L+ A FY
Sbjct: 1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42
>pdb|2DAL|A Chain A, Solution Structure Of The Novel Identified Uba-Like
Domain In The N-Terminal Of Human Fas Associated Factor
1 Protein
Length = 62
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVF 44
+QQF +ITGASE L+A + +LE A +F
Sbjct: 19 IQQFTTITGASESVGKHMLEACNNNLEMAVTMF 51
>pdb|2LBC|A Chain A, Solution Structure Of Tandem Uba Of Usp13
Length = 126
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 4 LSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTD 55
L +++ ++ G A+QAL+A++ +LE A D +S P+ + +D
Sbjct: 73 LDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSD 124
>pdb|2DZL|A Chain A, Solution Structure Of The Uba Domain In Human Protein
Fam100b
Length = 66
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRH 58
+ QFV G + A Q L+A+ W E A F+ Q ++ ++ H
Sbjct: 21 INQFVLAAGCAADQAKQLLQAAHWQFETALSTFF---QETNIPNSHH 64
>pdb|1OKI|A Chain A, Crystal Structure Of Truncated Human Beta-B1-Crystallin
pdb|1OKI|B Chain B, Crystal Structure Of Truncated Human Beta-B1-Crystallin
Length = 210
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 26 ALQALKASDWHLEGAFDVFYSQP 48
+L+ L+ WHLEG+F V ++P
Sbjct: 186 SLRRLRDKQWHLEGSFPVLATEP 208
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 23 EKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLE---ELYNRYK-----------D 68
E A Q + + + E V Y P KS+ + + L+ E +YK D
Sbjct: 5 EPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSAD 64
Query: 69 PYLDMILVDGITLLCN 84
P + ++V G+TL+C+
Sbjct: 65 PNVPNVVVTGLTLVCS 80
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 7 SNRDKLQQFVSITGASEKAALQALKASDWHLE 38
+N+ L Q +SI+ +EK LQ +K W+ +
Sbjct: 125 ANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQ 156
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 75 LVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQ----EFIGGLQ 120
L D +T+ CN P +I + ++W K+ T F K+ EF G Q
Sbjct: 17 LNDNVTIFCNIFYSQPLNITSMGITWFWKSLT---FDKEVKVFEFFGDHQ 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,693,443
Number of Sequences: 62578
Number of extensions: 172990
Number of successful extensions: 679
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 19
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)