Query 030467
Match_columns 177
No_of_seqs 140 out of 441
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 14:10:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 4.7E-48 1E-52 324.5 13.9 176 1-176 1-184 (260)
2 PF03556 Cullin_binding: Culli 99.5 1E-14 2.2E-19 110.4 4.8 50 127-176 1-51 (117)
3 PF14555 UBA_4: UBA-like domai 99.4 1.4E-13 3.1E-18 86.7 3.3 41 9-49 1-41 (43)
4 smart00804 TAP_C C-terminal do 97.9 1.2E-05 2.7E-10 54.6 3.8 44 3-46 7-50 (63)
5 PF03943 TAP_C: TAP C-terminal 97.8 1.5E-05 3.2E-10 52.0 2.1 40 9-48 1-40 (51)
6 KOG1364 Predicted ubiquitin re 97.1 0.00036 7.7E-09 61.6 3.0 44 5-48 3-47 (356)
7 PF00627 UBA: UBA/TS-N domain; 96.7 0.002 4.3E-08 38.8 3.3 33 9-42 3-35 (37)
8 smart00165 UBA Ubiquitin assoc 95.6 0.017 3.6E-07 34.3 3.2 35 9-44 2-36 (37)
9 cd00194 UBA Ubiquitin Associat 95.4 0.021 4.5E-07 34.1 3.2 35 10-45 3-37 (38)
10 cd00051 EFh EF-hand, calcium b 94.9 0.19 4.1E-06 30.7 6.6 61 59-119 2-62 (63)
11 cd05031 S-100A10_like S-100A10 94.3 0.19 4.1E-06 35.8 6.2 68 57-124 8-82 (94)
12 PF13833 EF-hand_8: EF-hand do 94.1 0.19 4.2E-06 31.7 5.3 50 72-121 3-53 (54)
13 PTZ00184 calmodulin; Provision 93.3 1.3 2.7E-05 32.6 9.5 67 56-122 10-76 (149)
14 PTZ00183 centrin; Provisional 93.2 1.8 3.9E-05 32.3 10.4 83 56-138 16-100 (158)
15 PTZ00183 centrin; Provisional 93.2 0.62 1.4E-05 34.9 7.7 66 56-121 89-154 (158)
16 KOG2086 Protein tyrosine phosp 93.1 0.024 5.3E-07 50.8 -0.2 41 8-48 4-44 (380)
17 cd00052 EH Eps15 homology doma 93.1 0.39 8.5E-06 31.0 5.7 61 60-122 2-62 (67)
18 cd05029 S-100A6 S-100A6: S-100 92.4 0.84 1.8E-05 32.5 7.0 67 57-123 10-81 (88)
19 smart00027 EH Eps15 homology d 92.3 0.54 1.2E-05 33.4 6.0 66 55-122 8-73 (96)
20 PF13499 EF-hand_7: EF-hand do 92.2 0.8 1.7E-05 29.8 6.3 62 58-119 1-66 (66)
21 PTZ00184 calmodulin; Provision 91.4 1.1 2.5E-05 32.9 7.1 18 106-123 97-114 (149)
22 TIGR00264 alpha-NAC-related pr 91.0 0.28 6.1E-06 37.2 3.4 34 9-42 79-112 (116)
23 cd05030 calgranulins Calgranul 90.9 0.57 1.2E-05 33.1 4.8 67 57-123 8-81 (88)
24 PRK06369 nac nascent polypepti 90.7 0.31 6.7E-06 37.0 3.4 34 9-42 77-110 (115)
25 KOG4351 Uncharacterized conser 90.6 0.089 1.9E-06 44.3 0.5 45 5-49 20-67 (244)
26 TIGR01446 DnaD_dom DnaD and ph 89.5 0.79 1.7E-05 30.9 4.4 56 73-131 15-72 (73)
27 cd00213 S-100 S-100: S-100 dom 89.1 2 4.4E-05 29.7 6.4 67 56-122 7-80 (88)
28 cd05026 S-100Z S-100Z: S-100Z 88.7 3 6.4E-05 29.7 7.1 67 57-123 10-83 (93)
29 KOG0027 Calmodulin and related 86.7 5.4 0.00012 30.5 8.0 85 56-140 7-97 (151)
30 PF09279 EF-hand_like: Phospho 86.2 2.1 4.6E-05 29.4 5.0 64 58-122 1-70 (83)
31 KOG2756 Predicted Mg2+-depende 85.9 0.45 9.7E-06 41.5 1.7 40 9-48 26-65 (349)
32 KOG0036 Predicted mitochondria 85.9 4.3 9.4E-05 37.2 8.0 83 56-141 81-163 (463)
33 cd05023 S-100A11 S-100A11: S-1 85.3 5.9 0.00013 28.2 7.1 68 56-123 8-82 (89)
34 COG5126 FRQ1 Ca2+-binding prot 83.7 5.7 0.00012 31.7 7.0 68 54-121 89-156 (160)
35 KOG0028 Ca2+-binding protein ( 83.3 15 0.00031 29.7 9.1 104 56-159 32-137 (172)
36 cd05022 S-100A13 S-100A13: S-1 83.1 8.5 0.00018 27.4 7.1 66 57-122 8-76 (89)
37 cd05025 S-100A1 S-100A1: S-100 82.4 10 0.00022 26.5 7.3 67 56-122 8-81 (92)
38 KOG4199 Uncharacterized conser 80.3 7 0.00015 35.4 6.9 152 10-164 81-244 (461)
39 smart00546 CUE Domain that may 80.1 1.5 3.2E-05 26.8 2.0 36 11-46 5-41 (43)
40 PF02845 CUE: CUE domain; Int 80.0 2.5 5.3E-05 25.8 2.9 37 10-46 3-40 (42)
41 COG1308 EGD2 Transcription fac 79.8 2.3 5E-05 32.5 3.3 33 10-42 86-118 (122)
42 KOG0027 Calmodulin and related 78.9 16 0.00034 27.9 7.8 81 54-134 41-127 (151)
43 PF05517 p25-alpha: p25-alpha 78.5 14 0.00031 28.8 7.6 98 59-156 1-123 (154)
44 PRK12332 tsf elongation factor 78.1 2.4 5.3E-05 34.9 3.2 39 9-47 5-43 (198)
45 cd05027 S-100B S-100B: S-100B 78.1 15 0.00033 25.9 7.0 66 57-122 8-80 (88)
46 CHL00098 tsf elongation factor 78.1 2.4 5.2E-05 35.0 3.2 38 10-47 3-40 (200)
47 PF00036 EF-hand_1: EF hand; 76.9 1.7 3.8E-05 24.6 1.5 18 105-122 12-29 (29)
48 TIGR00116 tsf translation elon 76.9 2.6 5.7E-05 36.7 3.2 38 9-46 5-42 (290)
49 KOG0036 Predicted mitochondria 76.1 30 0.00065 31.9 9.8 90 56-145 13-119 (463)
50 cd03567 VHS_GGA VHS domain fam 76.0 26 0.00056 27.1 8.3 94 59-152 2-129 (139)
51 PF13833 EF-hand_8: EF-hand do 75.2 5.5 0.00012 24.8 3.7 47 107-153 2-50 (54)
52 PRK09377 tsf elongation factor 75.2 3.1 6.7E-05 36.2 3.2 39 9-47 6-44 (290)
53 PF13405 EF-hand_6: EF-hand do 75.0 6.5 0.00014 22.0 3.6 30 58-87 1-31 (31)
54 COG5126 FRQ1 Ca2+-binding prot 73.3 43 0.00094 26.7 9.1 80 55-135 15-99 (160)
55 PRK02264 N(5),N(10)-methenylte 72.6 0.99 2.2E-05 39.7 -0.4 73 22-97 82-167 (317)
56 PF14658 EF-hand_9: EF-hand do 71.4 13 0.00028 25.4 4.9 50 72-121 13-64 (66)
57 PF03765 CRAL_TRIO_N: CRAL/TRI 71.1 2.9 6.2E-05 26.7 1.6 25 20-44 28-52 (55)
58 PRK10391 oriC-binding nucleoid 70.5 12 0.00027 25.9 4.7 40 111-152 2-41 (71)
59 COG2922 Smg Uncharacterized pr 68.7 3.9 8.3E-05 32.3 2.1 36 59-94 5-41 (157)
60 smart00027 EH Eps15 homology d 67.4 20 0.00043 25.2 5.5 82 88-170 4-86 (96)
61 PF12763 EF-hand_4: Cytoskelet 67.4 15 0.00031 27.1 4.9 65 54-122 7-72 (104)
62 PF09107 SelB-wing_3: Elongati 65.9 8.4 0.00018 24.8 3.0 22 11-32 12-33 (50)
63 KOG1071 Mitochondrial translat 65.3 6.8 0.00015 34.7 3.2 36 7-42 45-80 (340)
64 PF05042 Caleosin: Caleosin re 63.5 29 0.00064 28.1 6.3 61 55-115 94-160 (174)
65 PLN02964 phosphatidylserine de 62.8 42 0.00091 32.5 8.3 92 57-153 143-243 (644)
66 PRK05441 murQ N-acetylmuramic 62.5 9.7 0.00021 33.0 3.7 36 11-46 238-273 (299)
67 KOG0030 Myosin essential light 61.1 37 0.00081 26.9 6.3 89 55-143 9-123 (152)
68 cd00545 MCH Methenyltetrahydro 61.0 1.9 4.2E-05 37.9 -0.9 73 23-97 81-166 (312)
69 TIGR00274 N-acetylmuramic acid 60.6 11 0.00023 32.7 3.6 36 11-46 233-268 (291)
70 TIGR03120 one_C_mch methenylte 60.1 2.1 4.5E-05 37.7 -0.9 74 22-97 80-166 (312)
71 cd00171 Sec7 Sec7 domain; Doma 59.9 64 0.0014 25.9 7.8 68 56-123 82-163 (185)
72 PF13499 EF-hand_7: EF-hand do 59.6 27 0.00059 22.3 4.7 53 101-153 8-65 (66)
73 PRK12570 N-acetylmuramic acid- 58.2 13 0.00027 32.3 3.6 36 11-46 234-269 (296)
74 cd00252 SPARC_EC SPARC_EC; ext 56.6 72 0.0016 23.8 7.1 61 55-120 46-107 (116)
75 PRK10945 gene expression modul 56.3 22 0.00049 24.7 3.9 40 110-152 6-45 (72)
76 PF12096 DUF3572: Protein of u 56.3 62 0.0014 23.3 6.4 58 8-94 20-77 (88)
77 PF07848 PaaX: PaaX-like prote 54.0 10 0.00022 26.0 1.9 39 57-95 4-42 (70)
78 PF07531 TAFH: NHR1 homology t 53.3 20 0.00043 26.3 3.4 64 78-147 12-83 (96)
79 PF10075 PCI_Csn8: COP9 signal 52.8 10 0.00022 28.8 1.9 36 12-47 100-135 (143)
80 cd00052 EH Eps15 homology doma 52.6 37 0.0008 21.3 4.4 34 103-137 9-42 (67)
81 PRK00116 ruvA Holliday junctio 49.3 37 0.0008 27.4 4.8 94 5-98 65-171 (192)
82 PRK13749 transcriptional regul 49.2 1.1E+02 0.0025 23.0 8.4 69 12-101 6-74 (121)
83 KOG2643 Ca2+ binding protein, 49.1 40 0.00088 31.3 5.4 83 72-158 301-389 (489)
84 PF13443 HTH_26: Cro/C1-type H 49.0 9.5 0.00021 24.5 1.1 37 54-94 22-58 (63)
85 COG0264 Tsf Translation elonga 47.7 20 0.00044 31.4 3.2 39 9-47 6-44 (296)
86 PLN02223 phosphoinositide phos 47.4 43 0.00094 31.7 5.5 68 53-121 12-92 (537)
87 KOG1086 Cytosolic sorting prot 46.9 1.1E+02 0.0023 28.8 7.7 98 56-153 6-137 (594)
88 PF01314 AFOR_C: Aldehyde ferr 46.6 11 0.00023 33.8 1.3 36 79-115 116-151 (382)
89 COG2103 Predicted sugar phosph 46.5 29 0.00063 30.3 3.9 39 10-48 235-273 (298)
90 PHA01083 hypothetical protein 46.4 30 0.00064 27.4 3.6 52 73-128 43-97 (149)
91 PLN02230 phosphoinositide phos 46.0 54 0.0012 31.5 6.0 68 53-121 25-102 (598)
92 KOG4511 Uncharacterized conser 46.0 9.4 0.0002 33.3 0.9 66 28-100 18-86 (335)
93 COG3252 Methenyltetrahydrometh 45.7 5.9 0.00013 34.3 -0.4 84 21-106 80-178 (314)
94 PF07261 DnaB_2: Replication i 45.5 3.4 7.3E-05 27.7 -1.6 59 73-134 15-75 (77)
95 PF06972 DUF1296: Protein of u 45.1 41 0.00089 22.6 3.6 42 6-47 3-45 (60)
96 PF03793 PASTA: PASTA domain; 44.5 16 0.00035 23.5 1.6 22 17-38 5-26 (63)
97 KOG4380 Carnitine deficiency a 44.0 48 0.0011 27.6 4.7 85 18-108 71-165 (244)
98 PF09036 Bcr-Abl_Oligo: Bcr-Ab 43.0 47 0.001 23.4 3.8 31 123-154 24-61 (79)
99 PF07299 FBP: Fibronectin-bind 42.2 14 0.00031 30.7 1.4 52 3-67 47-98 (208)
100 PF11860 DUF3380: Protein of u 41.4 34 0.00074 27.6 3.4 57 7-67 119-175 (175)
101 PF14327 CSTF2_hinge: Hinge do 41.4 22 0.00048 25.0 2.1 38 3-41 25-63 (84)
102 smart00862 Trans_reg_C Transcr 39.9 70 0.0015 20.8 4.3 52 91-143 7-60 (78)
103 KOG0028 Ca2+-binding protein ( 38.6 1.8E+02 0.0038 23.6 7.0 67 55-121 104-170 (172)
104 KOG0034 Ca2+/calmodulin-depend 38.3 1.8E+02 0.0039 23.6 7.2 51 74-124 84-135 (187)
105 PF04361 DUF494: Protein of un 38.3 27 0.00059 27.5 2.4 36 59-94 5-41 (155)
106 PF02289 MCH: Cyclohydrolase ( 38.1 2.2 4.8E-05 37.6 -4.2 70 26-97 84-166 (313)
107 PLN02222 phosphoinositide phos 37.7 64 0.0014 30.9 5.1 65 55-122 23-91 (581)
108 cd07311 terB_like_1 tellurium 37.3 1.3E+02 0.0028 23.5 6.0 91 3-96 39-130 (150)
109 PLN02228 Phosphoinositide phos 37.2 1.2E+02 0.0025 29.1 6.7 67 53-121 20-92 (567)
110 PF06992 Phage_lambda_P: Repli 37.1 1.3E+02 0.0027 25.6 6.2 31 111-141 66-96 (233)
111 PLN02964 phosphatidylserine de 36.9 1.3E+02 0.0028 29.2 7.1 64 59-122 181-244 (644)
112 COG1619 LdcA Uncharacterized p 36.4 94 0.002 27.4 5.6 80 24-104 29-123 (313)
113 TIGR00084 ruvA Holliday juncti 36.3 69 0.0015 26.0 4.5 39 4-42 63-102 (191)
114 COG3710 CadC DNA-binding winge 34.8 41 0.00089 26.2 2.8 69 86-157 28-102 (148)
115 PF00046 Homeobox: Homeobox do 34.7 41 0.0009 21.0 2.4 35 56-95 12-46 (57)
116 cd07025 Peptidase_S66 LD-Carbo 34.6 72 0.0016 27.2 4.6 76 24-100 17-107 (282)
117 smart00549 TAFH TAF homology. 34.5 63 0.0014 23.6 3.5 64 79-147 12-82 (92)
118 PF04957 RMF: Ribosome modulat 34.0 27 0.00059 23.1 1.4 19 103-121 28-46 (55)
119 PF01023 S_100: S-100/ICaBP ty 33.9 63 0.0014 20.0 3.1 28 57-84 6-35 (44)
120 PF08855 DUF1825: Domain of un 33.5 40 0.00087 25.3 2.5 13 56-68 11-23 (108)
121 COG5503 Uncharacterized conser 33.1 32 0.00068 23.7 1.7 18 22-39 29-46 (69)
122 KOG4414 COP9 signalosome, subu 33.0 52 0.0011 26.4 3.1 32 12-43 135-166 (197)
123 PRK03980 flap endonuclease-1; 32.5 65 0.0014 27.9 4.0 76 10-94 177-270 (292)
124 PF03118 RNA_pol_A_CTD: Bacter 32.0 35 0.00076 22.9 1.8 49 83-135 14-65 (66)
125 PF04508 Pox_A_type_inc: Viral 31.3 41 0.00089 18.4 1.6 17 126-142 2-18 (23)
126 COG3655 Predicted transcriptio 31.0 25 0.00054 24.6 0.9 27 71-97 40-66 (73)
127 PF12174 RST: RCD1-SRO-TAF4 (R 30.7 33 0.00071 23.6 1.5 16 107-122 39-54 (70)
128 smart00324 RhoGAP GTPase-activ 30.6 2.4E+02 0.0053 21.4 12.5 127 25-170 9-137 (174)
129 PRK14563 ribosome modulation f 30.6 36 0.00078 22.5 1.6 20 103-122 28-47 (55)
130 PF10036 RLL: Putative carniti 30.5 53 0.0011 27.8 3.0 29 76-104 57-86 (249)
131 PF00486 Trans_reg_C: Transcri 29.6 87 0.0019 20.3 3.5 49 94-143 10-59 (77)
132 cd03022 DsbA_HCCA_Iso DsbA fam 29.1 67 0.0015 24.6 3.2 38 55-92 102-139 (192)
133 PF11527 ARL2_Bind_BART: The A 29.0 36 0.00078 25.3 1.6 38 55-97 42-79 (121)
134 COG5642 Uncharacterized conser 28.9 1.1E+02 0.0024 23.9 4.3 31 3-33 78-114 (149)
135 PLN02952 phosphoinositide phos 28.5 1.8E+02 0.0039 28.0 6.5 69 52-121 33-110 (599)
136 PF10045 DUF2280: Uncharacteri 28.5 1E+02 0.0022 23.0 3.8 68 1-68 1-68 (104)
137 PF10366 Vps39_1: Vacuolar sor 28.3 2.4E+02 0.0052 20.6 5.9 79 8-92 13-98 (108)
138 PRK09448 DNA starvation/statio 28.0 3E+02 0.0064 21.5 8.5 102 4-121 15-117 (162)
139 PF09712 PHA_synth_III_E: Poly 28.0 1.7E+02 0.0037 25.3 5.8 79 74-153 113-219 (293)
140 cd03019 DsbA_DsbA DsbA family, 27.7 51 0.0011 25.0 2.3 36 57-92 80-115 (178)
141 COG4976 Predicted methyltransf 26.7 2.3E+02 0.0049 24.6 6.1 101 56-174 84-197 (287)
142 TIGR02051 MerR Hg(II)-responsi 26.6 2.7E+02 0.0058 20.6 7.6 65 12-97 2-66 (124)
143 PF13624 SurA_N_3: SurA N-term 26.4 64 0.0014 24.2 2.6 61 73-134 83-144 (154)
144 PF12238 MSA-2c: Merozoite sur 26.0 91 0.002 25.9 3.6 54 40-93 66-121 (205)
145 PF08360 TetR_C_5: QacR-like p 26.0 71 0.0015 24.3 2.8 43 25-68 26-68 (131)
146 cd03518 Link_domain_HAPLN_modu 25.9 1.2E+02 0.0027 22.1 3.9 40 66-105 5-45 (95)
147 cd00383 trans_reg_C Effector d 25.8 1.4E+02 0.003 20.1 4.0 55 88-143 22-77 (95)
148 cd05022 S-100A13 S-100A13: S-1 25.5 2.5E+02 0.0053 19.8 5.6 64 93-160 7-79 (89)
149 COG0667 Tas Predicted oxidored 25.3 1.5E+02 0.0033 25.6 5.1 62 76-151 244-305 (316)
150 PHA00680 hypothetical protein 25.3 2.3E+02 0.0051 21.3 5.3 73 81-153 59-136 (143)
151 COG2414 Aldehyde:ferredoxin ox 25.2 87 0.0019 30.2 3.7 43 73-116 328-373 (614)
152 KOG0455 Homoserine dehydrogena 24.5 3E+02 0.0064 24.3 6.5 77 57-134 178-281 (364)
153 PF01726 LexA_DNA_bind: LexA D 24.5 79 0.0017 21.1 2.5 25 1-25 1-28 (65)
154 smart00054 EFh EF-hand, calciu 24.3 99 0.0021 14.8 3.0 14 107-120 14-27 (29)
155 cd04766 HTH_HspR Helix-Turn-He 24.2 67 0.0014 22.4 2.2 86 12-142 4-89 (91)
156 PRK03430 hypothetical protein; 23.8 66 0.0014 25.6 2.3 40 60-100 6-46 (157)
157 COG0177 Nth Predicted EndoIII- 23.6 67 0.0015 26.8 2.4 34 56-89 48-82 (211)
158 smart00368 LRR_RI Leucine rich 23.5 79 0.0017 17.3 2.0 17 71-87 11-27 (28)
159 PRK06771 hypothetical protein; 23.1 1.1E+02 0.0023 22.4 3.1 24 8-31 68-91 (93)
160 COG0752 GlyQ Glycyl-tRNA synth 23.0 22 0.00048 30.7 -0.6 109 23-140 40-178 (298)
161 cd04769 HTH_MerR2 Helix-Turn-H 22.8 85 0.0018 22.9 2.6 70 12-103 3-72 (116)
162 KOG0377 Protein serine/threoni 22.8 3.4E+02 0.0074 25.7 6.9 49 72-120 562-614 (631)
163 PRK09430 djlA Dna-J like membr 22.4 4.8E+02 0.01 22.1 9.9 134 3-141 71-228 (267)
164 PF13986 DUF4224: Domain of un 22.3 1.5E+02 0.0032 18.6 3.3 25 13-37 6-31 (47)
165 PRK09849 putative oxidoreducta 22.2 69 0.0015 31.4 2.5 31 80-112 370-400 (702)
166 KOG2140 Uncharacterized conser 22.1 47 0.001 31.8 1.3 19 19-37 288-306 (739)
167 COG2147 RPL19A Ribosomal prote 22.1 94 0.002 24.6 2.8 30 125-154 97-127 (150)
168 PF01724 DUF29: Domain of unkn 22.1 65 0.0014 24.8 1.9 81 71-159 22-111 (139)
169 KOG0037 Ca2+-binding protein, 22.0 4.3E+02 0.0093 22.3 6.8 86 56-142 56-158 (221)
170 TIGR02043 ZntR Zn(II)-responsi 21.8 3.5E+02 0.0075 20.2 6.6 67 12-99 4-70 (131)
171 cd03515 Link_domain_TSG_6_like 21.8 1.8E+02 0.004 21.1 4.1 33 73-105 13-45 (93)
172 cd06577 PASTA_pknB PASTA domai 21.7 83 0.0018 18.9 2.1 22 17-38 4-25 (62)
173 COG5296 Transcription factor i 21.6 1.3E+02 0.0028 27.9 3.9 37 106-142 297-338 (521)
174 PF10384 Scm3: Centromere prot 21.5 88 0.0019 20.7 2.2 21 56-76 15-39 (58)
175 PF12636 DUF3781: Protein of u 21.3 88 0.0019 21.8 2.2 37 76-114 12-48 (73)
176 smart00530 HTH_XRE Helix-turn- 21.3 1.5E+02 0.0033 16.5 3.2 20 73-92 36-55 (56)
177 cd03024 DsbA_FrnE DsbA family, 21.1 1E+02 0.0022 23.9 2.9 37 55-91 110-146 (201)
178 COG0292 RplT Ribosomal protein 21.0 2.1E+02 0.0046 21.7 4.4 56 91-151 55-110 (118)
179 COG3130 Rmf Ribosome modulatio 20.9 72 0.0016 20.9 1.6 19 107-125 32-50 (55)
180 PF14229 DUF4332: Domain of un 20.9 2.8E+02 0.006 20.7 5.1 61 77-141 30-92 (122)
181 TIGR02047 CadR-PbrR Cd(II)/Pb( 20.7 3.6E+02 0.0078 20.0 7.3 66 12-98 3-68 (127)
182 PF08986 DUF1889: Domain of un 20.6 62 0.0014 24.1 1.4 20 72-91 46-65 (119)
183 CHL00173 cpeA phycoerythrin al 20.6 1.3E+02 0.0029 24.0 3.4 91 4-94 19-128 (164)
184 PF13730 HTH_36: Helix-turn-he 20.5 1.7E+02 0.0038 17.9 3.4 24 12-35 28-54 (55)
185 PRK08406 transcription elongat 20.5 76 0.0016 24.5 2.0 23 3-25 4-26 (140)
186 CHL00124 acpP acyl carrier pro 20.4 2.4E+02 0.0051 18.9 4.3 69 58-137 9-78 (82)
187 TIGR01565 homeo_ZF_HD homeobox 20.4 2E+02 0.0043 19.0 3.7 34 56-92 13-48 (58)
188 cd00086 homeodomain Homeodomai 20.3 1.5E+02 0.0033 18.1 3.1 35 56-95 12-46 (59)
189 PF07288 DUF1447: Protein of u 20.2 80 0.0017 21.8 1.8 21 19-39 25-46 (69)
190 PF12550 GCR1_C: Transcription 20.1 2.6E+02 0.0057 19.2 4.5 58 113-175 16-77 (81)
191 PF01323 DSBA: DSBA-like thior 20.0 1.3E+02 0.0029 22.9 3.4 39 56-94 103-141 (193)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.7e-48 Score=324.50 Aligned_cols=176 Identities=46% Similarity=0.806 Sum_probs=166.3
Q ss_pred CCCCCccHHHHHHHHHHhhCCCHHHHHHHHHhCCCCcccc-chhhccccCC------CCcCCHHHHHHHHHHhcCCCC-C
Q 030467 1 MHKLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGA-FDVFYSQPQS------KSLTDTRHLEELYNRYKDPYL-D 72 (177)
Q Consensus 1 m~~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A-~~~ff~~~~~------~~~~~~~~l~~lF~~Y~d~~~-d 72 (177)
|++|+..+++.+++|+.+|+.++.+++.+|++++|+++.| .+.||.++.. ..+.+.+.+.++|.+|+||+. +
T Consensus 1 mnklk~~~~d~~~~~~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~l~~~f~~y~d~~d~~ 80 (260)
T KOG3077|consen 1 MNKLKSSQKDKFEQFMSFTASRKKTSLSCLAACDWNLKYAFNDSYYTNPQSLREESVQARVSEKRLEELFNQYKDPDDDN 80 (260)
T ss_pred CCccchhHHHHHHhhcccccccchhhhhhhcccccccchhcccchhcchhHHHHhhhhccccHHHHHHHHHHhcCccccc
Confidence 8999999999999999999999999999999999999999 6666666643 245678999999999999976 5
Q ss_pred ccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccChhHHHHHHH
Q 030467 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYN 152 (177)
Q Consensus 73 ~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~iY~ 152 (177)
.|++||+.+||+||||+|+|+++|||||+|+|++||+|||++|+.||.++||||+++|+..|+.++..|+|.+.||.||+
T Consensus 81 ~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~~l~~~l~d~~~Fk~iY~ 160 (260)
T KOG3077|consen 81 LIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRLDFLRSVLKDLEKFKSIYR 160 (260)
T ss_pred ccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHccHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHhhhhhccCCcccChHhHHhhhh
Q 030467 153 FAFAWAKEKVIVFLFLRISTCKLS 176 (177)
Q Consensus 153 ftF~f~~~~gqk~L~le~A~~~~~ 176 (177)
|||+|++++|||+|+++|||+||.
T Consensus 161 faf~fa~e~~qk~Ld~~~ai~~w~ 184 (260)
T KOG3077|consen 161 FAFNFAKEPGQKSLDLETAISLWK 184 (260)
T ss_pred hhhhhccCcCcCcCCHHHHHHHHH
Confidence 999999999999999999999985
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=99.52 E-value=1e-14 Score=110.40 Aligned_cols=50 Identities=28% Similarity=0.535 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHcc-ChhHHHHHHHHHhhhhhccCCcccChHhHHhhhh
Q 030467 127 LDKFRERISFMRAELK-DEQKFREIYNFAFAWAKEKVIVFLFLRISTCKLS 176 (177)
Q Consensus 127 l~~lk~~l~~l~~~l~-~~~~Fk~iY~ftF~f~~~~gqk~L~le~A~~~~~ 176 (177)
|++||++|++|+++|. ++..||+||+|||+|+|++|||+|++|+|+++|.
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~~~qr~l~~e~Ai~~W~ 51 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFAREEGQRSLPLETAIAYWR 51 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS-TT-SSEEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCcccCCCCHHHHHHHHH
Confidence 7899999999999998 7778999999999999999999999999999985
No 3
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.41 E-value=1.4e-13 Score=86.69 Aligned_cols=41 Identities=41% Similarity=0.793 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccC
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ 49 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~ 49 (177)
+++|++|+++||+++.+|++||+.++|||+.||+.||+++.
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999764
No 4
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.92 E-value=1.2e-05 Score=54.65 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=41.3
Q ss_pred CCCccHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcc
Q 030467 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46 (177)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (177)
.+++.|.++|.+|...||.+..-++.+|+.+|||++.|+..|=+
T Consensus 7 ~~~~~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 7 TLSPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999955
No 5
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=97.77 E-value=1.5e-05 Score=52.00 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcccc
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQP 48 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (177)
+++|.+|...||.+..-|..||+.++||++.|+..|-...
T Consensus 1 q~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~ 40 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEELK 40 (51)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHCC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999997554
No 6
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00036 Score=61.60 Aligned_cols=44 Identities=32% Similarity=0.583 Sum_probs=40.4
Q ss_pred CccHHHHHHHHHHhhC-CCHHHHHHHHHhCCCCccccchhhcccc
Q 030467 5 SRSNRDKLQQFVSITG-ASEKAALQALKASDWHLEGAFDVFYSQP 48 (177)
Q Consensus 5 ~~~q~~~i~~F~~~T~-~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (177)
+.++.++|.+|+.||+ .+.+.|++||+..+|+++.|++-||.+.
T Consensus 3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~ 47 (356)
T KOG1364|consen 3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHG 47 (356)
T ss_pred cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 4568899999999999 6799999999999999999999999874
No 7
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.75 E-value=0.002 Score=38.80 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccch
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (177)
.+.|++.+++ |.++..|++.|+.++||++.|++
T Consensus 3 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 3 EEKVQQLMEM-GFSREQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5679999999 99999999999999999999986
No 8
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.59 E-value=0.017 Score=34.32 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhh
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVF 44 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~f 44 (177)
.+.|.+++++ |.++..|++.|+.++||++.|++-.
T Consensus 2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3567788776 9999999999999999999998643
No 9
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.42 E-value=0.021 Score=34.08 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=30.3
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhc
Q 030467 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFY 45 (177)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff 45 (177)
+.|.++++ .|.++..|+..|+.++||++.|++-.|
T Consensus 3 ~~v~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLE-MGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 56788887 499999999999999999999987654
No 10
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.87 E-value=0.19 Score=30.71 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhh
Q 030467 59 LEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGL 119 (177)
Q Consensus 59 l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~ 119 (177)
+..+|..|....++.|..+-+...+..+|..+.+..+-.+..++....-|.++-++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678888865445689999999999999998887777777888888888999999998654
No 11
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.26 E-value=0.19 Score=35.75 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcC-CC-CCccCHHHHHHHHhH-----cCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCC
Q 030467 57 RHLEELYNRYKD-PY-LDMILVDGITLLCND-----LQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGI 124 (177)
Q Consensus 57 ~~l~~lF~~Y~d-~~-~d~I~~dG~~~~~ed-----Lgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~ 124 (177)
..|...|..|-+ .. ++.|+.+-+..++.. +|..++...+--+...+....-|.|+-++|+..|..+++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 567788999965 32 469999999999876 677876666666666778888999999999999988754
No 12
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.08 E-value=0.19 Score=31.69 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=45.8
Q ss_pred CccCHHHHHHHHhHcCCC-CCCHHHHHHHHhhCccccccccHHHHHhhhhh
Q 030467 72 DMILVDGITLLCNDLQVD-PQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (177)
Q Consensus 72 d~I~~dG~~~~~edLgv~-~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~ 121 (177)
+.|+.+.+...+..+|+. +.+-.+=.|-..+-...-|.|+.+||+..|..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999889999 88888999999999999999999999999875
No 13
>PTZ00184 calmodulin; Provisional
Probab=93.29 E-value=1.3 Score=32.62 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
.+.+.+.|..+-......|+.+-+..++..+|.+|.+..+-.+.-.+....-|.++.++|+..|...
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 3566777777632233589999999999888988877666667777777778889999999887753
No 14
>PTZ00183 centrin; Provisional
Probab=93.21 E-value=1.8 Score=32.32 Aligned_cols=83 Identities=8% Similarity=0.141 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc--CCCcHHHHHHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL--GIDSLDKFRER 133 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l--~~dsl~~lk~~ 133 (177)
.+.+..+|..+-......|+.+-+..++..+|..+....+-.+--.+....-|.|+.++|+..+... .....+.++..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4667778877633233589999999999999987766555566666677788899999999887763 23344455554
Q ss_pred HHHHH
Q 030467 134 ISFMR 138 (177)
Q Consensus 134 l~~l~ 138 (177)
...+.
T Consensus 96 F~~~D 100 (158)
T PTZ00183 96 FRLFD 100 (158)
T ss_pred HHHhC
Confidence 44443
No 15
>PTZ00183 centrin; Provisional
Probab=93.19 E-value=0.62 Score=34.90 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhh
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~ 121 (177)
...+..+|..|-....+.|+.+.+..+|..+|+.+.+-.+-.+...+....-|.|+.++|+..+..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 456777787773333357888888888888876666555555556666566678888888777654
No 16
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=93.14 E-value=0.024 Score=50.77 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcccc
Q 030467 8 NRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQP 48 (177)
Q Consensus 8 q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (177)
..+.+++|+.+||.++..|+.||...+|+++.|...++...
T Consensus 4 p~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 4 PLDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred chhHHHHHhccCCCCccccccccccCCCchhhhhhhhcccc
Confidence 35789999999999999999999999999999999999753
No 17
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.08 E-value=0.39 Score=30.95 Aligned_cols=61 Identities=8% Similarity=0.059 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 60 EELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 60 ~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
.++|..+-......|+.+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 357888733233689999999999999985444333 3345677778999999999998765
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=92.40 E-value=0.84 Score=32.46 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCC-C-CCccCHHHHHHHHhH---cCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcC
Q 030467 57 RHLEELYNRYKDP-Y-LDMILVDGITLLCND---LQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (177)
Q Consensus 57 ~~l~~lF~~Y~d~-~-~d~I~~dG~~~~~ed---Lgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~ 123 (177)
..|.++|.+|... . .+.|+.+.+.+++.. +|..+.+-.+--+-..+....-|.|+-++|+.-|..+-
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4678899999863 3 359999999999974 78777655566666677888889999999998877753
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=92.33 E-value=0.54 Score=33.43 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
....+.+.|..+-....+.|+.+-+.+.+..+|++.+.+.-+. -.+....-|.|+.++|+..|..+
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 3467888888884434469999999999999998766555433 34566778999999999988775
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.19 E-value=0.8 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCC--HH--HHHHHHhhCccccccccHHHHHhhh
Q 030467 58 HLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD--IV--MLVVSWHMKAATMCEFSKQEFIGGL 119 (177)
Q Consensus 58 ~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed--~~--~L~la~~l~a~~~g~~tr~eF~~g~ 119 (177)
+|.++|+.|=....+.|+.+-+.+++..++....+ +. +-.+-..+-...-|.|+.+||++.|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47789999854445699999999999999986522 21 2222345566778999999998754
No 21
>PTZ00184 calmodulin; Provisional
Probab=91.38 E-value=1.1 Score=32.88 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=8.7
Q ss_pred ccccccHHHHHhhhhhcC
Q 030467 106 TMCEFSKQEFIGGLQSLG 123 (177)
Q Consensus 106 ~~g~~tr~eF~~g~~~l~ 123 (177)
.-|.+++++|..+++.+|
T Consensus 97 ~~g~i~~~e~~~~l~~~~ 114 (149)
T PTZ00184 97 GNGFISAAELRHVMTNLG 114 (149)
T ss_pred CCCeEeHHHHHHHHHHHC
Confidence 344555555555554444
No 22
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=90.97 E-value=0.28 Score=37.21 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccch
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (177)
.+.|+-.++-||+|+..|+..|+++|||+-.|+-
T Consensus 79 ~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 79 EDDIELVMKQCNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 3557888899999999999999999999988874
No 23
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=90.92 E-value=0.57 Score=33.12 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCC--CCccCHHHHHHHHh-HcCCCCC----CHHHHHHHHhhCccccccccHHHHHhhhhhcC
Q 030467 57 RHLEELYNRYKDPY--LDMILVDGITLLCN-DLQVDPQ----DIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (177)
Q Consensus 57 ~~l~~lF~~Y~d~~--~d~I~~dG~~~~~e-dLgv~~e----d~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~ 123 (177)
..|..+|.+|...+ .+.|+.+-+..++. .+|-.+. +-.+=-+-..+....-|.|+-++|+..+..+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45778999999764 36999999999997 4543232 33344444556777889999999999988763
No 24
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=90.68 E-value=0.31 Score=36.97 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccch
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (177)
.+.|+-.++-||+|+..|+..|+.++||+-.||-
T Consensus 77 ~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~ 110 (115)
T PRK06369 77 EEDIELVAEQTGVSEEEARKALEEANGDLAEAIL 110 (115)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHH
Confidence 4568889999999999999999999999988875
No 25
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=0.089 Score=44.34 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=39.2
Q ss_pred CccHHHHHHHHHHhhCCC--H-HHHHHHHHhCCCCccccchhhccccC
Q 030467 5 SRSNRDKLQQFVSITGAS--E-KAALQALKASDWHLEGAFDVFYSQPQ 49 (177)
Q Consensus 5 ~~~q~~~i~~F~~~T~~s--~-~~A~~~L~~~~w~le~A~~~ff~~~~ 49 (177)
+.++..+|.+|..+++.. + ..|++||+..||||..|+..||+..+
T Consensus 20 t~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 20 TTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 456788999999999874 5 77999999999999999999998753
No 26
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=89.49 E-value=0.79 Score=30.93 Aligned_cols=56 Identities=7% Similarity=0.211 Sum_probs=39.7
Q ss_pred ccCHHHHHHHHhHcCCCCCCHHHHHHHHhh--CccccccccHHHHHhhhhhcCCCcHHHHH
Q 030467 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHM--KAATMCEFSKQEFIGGLQSLGIDSLDKFR 131 (177)
Q Consensus 73 ~I~~dG~~~~~edLgv~~ed~~~L~la~~l--~a~~~g~~tr~eF~~g~~~l~~dsl~~lk 131 (177)
....+-+..++++.|.+|+ ++..++-+-+ +.++++++. .-+..|++-|+.|+++.+
T Consensus 15 ~~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi~--~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 15 PFEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYID--AILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHHH--HHHHHHHHcCCCCHHHHh
Confidence 4567888899999998754 6666665544 344554443 566679999999999865
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=89.13 E-value=2 Score=29.69 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcC--CCCCccCHHHHHHHHhH-cCCCC----CCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 56 TRHLEELYNRYKD--PYLDMILVDGITLLCND-LQVDP----QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 56 ~~~l~~lF~~Y~d--~~~d~I~~dG~~~~~ed-Lgv~~----ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
.+.+.++|..|-. ...+.|+.+.+.+++.. +|..+ ....+=-+--.+....-|.|+-++|+..|..+
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3557778999955 34469999999999976 56433 23334444456677888999999999988865
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.66 E-value=3 Score=29.70 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCCC--ccCHHHHHHHHhH-c----CCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcC
Q 030467 57 RHLEELYNRYKDPYLD--MILVDGITLLCND-L----QVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (177)
Q Consensus 57 ~~l~~lF~~Y~d~~~d--~I~~dG~~~~~ed-L----gv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~ 123 (177)
..+.++|.+|.+.+.| .|+.+-+.+++.. + +-.+.+-.+=-+...+....=|.|+-+||+.-+..+-
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4455669999976554 5999999999976 3 3333334455566677788889999999999888764
No 29
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=86.67 E-value=5.4 Score=30.48 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCCC------cHHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGID------SLDK 129 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~d------sl~~ 129 (177)
...+.+.|..+-......|..+=+...+..||.+|....+-.+-..+....-|.|..++|+.-+...... +.+.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 4678888888854444699999999999999999999999999999999999999999999988876542 2335
Q ss_pred HHHHHHHHHHH
Q 030467 130 FRERISFMRAE 140 (177)
Q Consensus 130 lk~~l~~l~~~ 140 (177)
+|....-+...
T Consensus 87 l~eaF~~fD~d 97 (151)
T KOG0027|consen 87 LKEAFRVFDKD 97 (151)
T ss_pred HHHHHHHHccC
Confidence 55555544443
No 30
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=86.20 E-value=2.1 Score=29.43 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHhHcC----CCCCCHHHHHHHHhh--CccccccccHHHHHhhhhhc
Q 030467 58 HLEELYNRYKDPYLDMILVDGITLLCNDLQ----VDPQDIVMLVVSWHM--KAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 58 ~l~~lF~~Y~d~~~d~I~~dG~~~~~edLg----v~~ed~~~L~la~~l--~a~~~g~~tr~eF~~g~~~l 122 (177)
.|..+|.+|.+ +...|+++.+.+|+.+-. ++++.+.-++--+.- .....+.+|.++|..=+..-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 47899999987 567999999999996433 334444444333311 12356899999999877553
No 31
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=85.94 E-value=0.45 Score=41.50 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcccc
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQP 48 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (177)
++++.+|-.+|.++++.|+.+|..+.|.++.|++.||...
T Consensus 26 ~~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 26 RLLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 4678899999999999999999999999999999999753
No 32
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=85.89 E-value=4.3 Score=37.22 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERIS 135 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~ 135 (177)
..+|-.+|.+-.-..+..|++..|.++|.|+||+.+|-..--+-..+--..-+.|+-+||.+=+.-.- .+.+..-+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~~ 157 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIYD 157 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHHH
Confidence 45566666665433345999999999999999999998888877777777788999999998776654 455555555
Q ss_pred HHHHHc
Q 030467 136 FMRAEL 141 (177)
Q Consensus 136 ~l~~~l 141 (177)
.|+..+
T Consensus 158 ~W~h~~ 163 (463)
T KOG0036|consen 158 FWRHVL 163 (463)
T ss_pred hhhhhe
Confidence 565554
No 33
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=85.31 E-value=5.9 Score=28.15 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCCC--ccCHHHHHHHHhHc-----CCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcC
Q 030467 56 TRHLEELYNRYKDPYLD--MILVDGITLLCNDL-----QVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d--~I~~dG~~~~~edL-----gv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~ 123 (177)
-..|..+|.+|.+.+.+ .|+.+.+..+++.- +-..++..+--+-..+....=|.|+-+||+.-+..+.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 35688899999876543 79999999999765 2222223344445566777889999999998777663
No 34
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=83.68 E-value=5.7 Score=31.70 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhh
Q 030467 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (177)
Q Consensus 54 ~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~ 121 (177)
....+|...|.-|=......|+..=+...+..||-+..+-.+=-|-..+..-.-|.|+.++|+++|..
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 34788999999996655569999999999999999988777766666777778999999999998875
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=83.31 E-value=15 Score=29.73 Aligned_cols=104 Identities=11% Similarity=0.196 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc-C-CCcHHHHHHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL-G-IDSLDKFRER 133 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l-~-~dsl~~lk~~ 133 (177)
...+...|+-+--...+.|+.+++--=.-.||.+|..-.++-|.--......|.|+=++|+..|... + -||.+.++..
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 3556666666532234799999996666789999999999988888888889999999999997763 2 4699988888
Q ss_pred HHHHHHHccChhHHHHHHHHHhhhhh
Q 030467 134 ISFMRAELKDEQKFREIYNFAFAWAK 159 (177)
Q Consensus 134 l~~l~~~l~~~~~Fk~iY~ftF~f~~ 159 (177)
+......=...-.++.+-+-++.++-
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhCc
Confidence 86544333332336666666666554
No 36
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=83.13 E-value=8.5 Score=27.45 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcC-CCCCccCHHHHHHHHhH-cCCCCCC-HHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 57 RHLEELYNRYKD-PYLDMILVDGITLLCND-LQVDPQD-IVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 57 ~~l~~lF~~Y~d-~~~d~I~~dG~~~~~ed-Lgv~~ed-~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
..|.+.|..|.. ...+.|+.+.+..++.. ||--.++ -.+=-+-..+....=|.|+-+||+.-+..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 467889999966 45579999999999988 9844444 334444456777888999999999887776
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=82.37 E-value=10 Score=26.51 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCC-CC-ccCHHHHHHHHhH-cCC----CCCCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 56 TRHLEELYNRYKDPY-LD-MILVDGITLLCND-LQV----DPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~-~d-~I~~dG~~~~~ed-Lgv----~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
...|.+.|..|-|.+ .. .|+.+-+.+++.. +|. .|....+=-+-..+....-|.|+-++|+.-+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 356888999996333 34 5999999999975 553 4554445555566788889999999999877765
No 38
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.31 E-value=7 Score=35.41 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=95.6
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHc--C
Q 030467 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDL--Q 87 (177)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edL--g 87 (177)
+.+.+|+. .+....|.++|+.-+..+..-+...--..++..++-.+.|+.| ++.-+..||..+.+|+.-...-| .
T Consensus 81 ~ll~~l~d--~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al-~~lt~~qpdl~da~g~~vvv~lL~~~ 157 (461)
T KOG4199|consen 81 ELLEQLAD--ECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAI-NSLTHKQPDLFDAEAMAVVLKLLALK 157 (461)
T ss_pred HHHHHHHH--HHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHH-HHhhcCCcchhccccHHHHHHHHhcc
Confidence 45567763 5556678888888887776666555422222223334455444 33345567888888888777644 5
Q ss_pred CCCCCHHHHHHHHhhCccccccccHHHHHhh-----hh-hcCCCcH-HHHHHHHHHHHHHccChh---HHHHHHHHHhhh
Q 030467 88 VDPQDIVMLVVSWHMKAATMCEFSKQEFIGG-----LQ-SLGIDSL-DKFRERISFMRAELKDEQ---KFREIYNFAFAW 157 (177)
Q Consensus 88 v~~ed~~~L~la~~l~a~~~g~~tr~eF~~g-----~~-~l~~dsl-~~lk~~l~~l~~~l~~~~---~Fk~iY~ftF~f 157 (177)
++-+|+..+-+.|.-+|-.|-+..|..|++- +. .+.-.+- .-.|..-..++.-+.|+. .|-..|.|+=.+
T Consensus 158 ~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~i 237 (461)
T KOG4199|consen 158 VESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTI 237 (461)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHH
Confidence 5668899999999999999999999999874 11 1211111 234444455555554432 177777777777
Q ss_pred hhccCCc
Q 030467 158 AKEKVIV 164 (177)
Q Consensus 158 ~~~~gqk 164 (177)
+++.+-+
T Consensus 238 a~e~~l~ 244 (461)
T KOG4199|consen 238 AKEGILT 244 (461)
T ss_pred HHhhhHH
Confidence 7765433
No 39
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=80.11 E-value=1.5 Score=26.82 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=28.3
Q ss_pred HHHHHHHh-hCCCHHHHHHHHHhCCCCccccchhhcc
Q 030467 11 KLQQFVSI-TGASEKAALQALKASDWHLEGAFDVFYS 46 (177)
Q Consensus 11 ~i~~F~~~-T~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (177)
.+.+..++ =+.++...+..|+++++|++.|++...+
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44555444 4567899999999999999999998764
No 40
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=80.00 E-value=2.5 Score=25.77 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHhhC-CCHHHHHHHHHhCCCCccccchhhcc
Q 030467 10 DKLQQFVSITG-ASEKAALQALKASDWHLEGAFDVFYS 46 (177)
Q Consensus 10 ~~i~~F~~~T~-~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (177)
+.|++..++.- .++..-+..|+++++|++.|++...+
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56777777664 57889999999999999999987653
No 41
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=79.80 E-value=2.3 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHhCCCCccccch
Q 030467 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (177)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (177)
+-|.=.++=||+|+..|+..|+.+|.||-.||-
T Consensus 86 eDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm 118 (122)
T COG1308 86 EDIKLVMEQAGVSREEAIKALEEAGGDLAEAIM 118 (122)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHH
Confidence 347777888999999999999999999988874
No 42
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=78.94 E-value=16 Score=27.90 Aligned_cols=81 Identities=19% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCC----HHHHHHHH-hhCccccccccHHHHHhhhhhcCCC-cH
Q 030467 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD----IVMLVVSW-HMKAATMCEFSKQEFIGGLQSLGID-SL 127 (177)
Q Consensus 54 ~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed----~~~L~la~-~l~a~~~g~~tr~eF~~g~~~l~~d-sl 127 (177)
+....+..+++++-.+.+..|+.+-...++...+..... ...+.=|+ .+-....|.||.+|+..-|..+|-. |.
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~ 120 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD 120 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH
Confidence 467899999999865555799999999999988886654 33566665 5566789999999999999999833 43
Q ss_pred HHHHHHH
Q 030467 128 DKFRERI 134 (177)
Q Consensus 128 ~~lk~~l 134 (177)
+..+.-+
T Consensus 121 ~e~~~mi 127 (151)
T KOG0027|consen 121 EECKEMI 127 (151)
T ss_pred HHHHHHH
Confidence 3333333
No 43
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=78.50 E-value=14 Score=28.81 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=59.0
Q ss_pred HHHHHHHhcC---CCCCccCHHHHHHHHhHcCCCCC---CHHHHHHHHhhCccccccccHHHHHhhhhhc----CCC--c
Q 030467 59 LEELYNRYKD---PYLDMILVDGITLLCNDLQVDPQ---DIVMLVVSWHMKAATMCEFSKQEFIGGLQSL----GID--S 126 (177)
Q Consensus 59 l~~lF~~Y~d---~~~d~I~~dG~~~~~edLgv~~e---d~~~L~la~~l~a~~~g~~tr~eF~~g~~~l----~~d--s 126 (177)
|+++|..|.. .....|+.....++|.|-||=.. ...+=++=.+++++.-..|+-++|++.+..+ +++ +
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 6789999942 23468999999999999999332 2222233345677666679999999999876 343 6
Q ss_pred HHHHHHHHH-----HH--------HHHccChhHHHHHHHHHhh
Q 030467 127 LDKFRERIS-----FM--------RAELKDEQKFREIYNFAFA 156 (177)
Q Consensus 127 l~~lk~~l~-----~l--------~~~l~~~~~Fk~iY~ftF~ 156 (177)
.+.+...|- .. .+.+.|.+.|.-+|+.-|+
T Consensus 81 ~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 81 AEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-
T ss_pred HHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCC
Confidence 777777771 11 1222455567777777776
No 44
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=78.14 E-value=2.4 Score=34.86 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccc
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (177)
.++|.+.++.||++--.+..-|..++||++.|++---..
T Consensus 5 a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~ 43 (198)
T PRK12332 5 AKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREK 43 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 367999999999999999999999999999999876443
No 45
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=78.12 E-value=15 Score=25.86 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCC-CCC-ccCHHHHHHHHhH-----cCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 57 RHLEELYNRYKDP-YLD-MILVDGITLLCND-----LQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 57 ~~l~~lF~~Y~d~-~~d-~I~~dG~~~~~ed-----Lgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
..|.+.|..|.+. ... .|+.+-+..++.. +|-.++.-.+=-+-..+....-|.|+-++|+.-+..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4678899999632 334 6999999999999 9976654434444445678888999999998776654
No 46
>CHL00098 tsf elongation factor Ts
Probab=78.12 E-value=2.4 Score=34.97 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccc
Q 030467 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (177)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (177)
++|.+.++.||+.--.+..-|..++||++.|++---..
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~ 40 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQK 40 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 57999999999999999999999999999999766443
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=76.93 E-value=1.7 Score=24.60 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=11.7
Q ss_pred cccccccHHHHHhhhhhc
Q 030467 105 ATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 105 ~~~g~~tr~eF~~g~~~l 122 (177)
-.=|.|+.+||+.+|++|
T Consensus 12 d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 12 DGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TSSSEEEHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHhC
Confidence 345677777777776653
No 48
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=76.87 E-value=2.6 Score=36.68 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcc
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (177)
.+.|.+.++.||+.--.+..-|..++||++.|++--=.
T Consensus 5 a~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRk 42 (290)
T TIGR00116 5 AQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRE 42 (290)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46799999999999999999999999999999986543
No 49
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=76.15 E-value=30 Score=31.92 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCC-CCCHHHHHHHHhhCccccccccHHHHHhhhhhc------------
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVD-PQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL------------ 122 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~-~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l------------ 122 (177)
+.++..+|+.+-......++++.+.+-++.|+.. |..-..=.|...+.+..-|...-++|.+-+..-
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD 92 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSID 92 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhc
Confidence 5678889999865445699999999999999998 777778888899999999999999999886542
Q ss_pred ----CCCcHHHHHHHHHHHHHHccChh
Q 030467 123 ----GIDSLDKFRERISFMRAELKDEQ 145 (177)
Q Consensus 123 ----~~dsl~~lk~~l~~l~~~l~~~~ 145 (177)
|+-.+..+.++|.++-.+|.+..
T Consensus 93 ~~hdG~i~~~Ei~~~l~~~gi~l~de~ 119 (463)
T KOG0036|consen 93 LEHDGKIDPNEIWRYLKDLGIQLSDEK 119 (463)
T ss_pred cccCCccCHHHHHHHHHHhCCccCHHH
Confidence 44568888999988888876543
No 50
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.02 E-value=26 Score=27.07 Aligned_cols=94 Identities=20% Similarity=0.342 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHH--HHHHHHhhCccc----------------------cccccHHH
Q 030467 59 LEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIV--MLVVSWHMKAAT----------------------MCEFSKQE 114 (177)
Q Consensus 59 l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~--~L~la~~l~a~~----------------------~g~~tr~e 114 (177)
++++-++--++.....+.++++.+|+-++-+|+.+. +-.|.-+++.+. --+|...+
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 344555544544345667777777777777776533 444444544432 23688999
Q ss_pred HHhhhhhcC------CCcHHHHHHH----HHHHHHHccChhHHHHHHH
Q 030467 115 FIGGLQSLG------IDSLDKFRER----ISFMRAELKDEQKFREIYN 152 (177)
Q Consensus 115 F~~g~~~l~------~dsl~~lk~~----l~~l~~~l~~~~~Fk~iY~ 152 (177)
|++-+.++= -.+-...|.+ |..|...+.+.+.|++.|.
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 998888752 1244455554 5566666666566666664
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=75.17 E-value=5.5 Score=24.76 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=28.5
Q ss_pred cccccHHHHHhhhhhcCCC--cHHHHHHHHHHHHHHccChhHHHHHHHH
Q 030467 107 MCEFSKQEFIGGLQSLGID--SLDKFRERISFMRAELKDEQKFREIYNF 153 (177)
Q Consensus 107 ~g~~tr~eF~~g~~~l~~d--sl~~lk~~l~~l~~~l~~~~~Fk~iY~f 153 (177)
-|.||+++|...+..+|.. |-+.+..-+..+...=..--.|.+|..+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 4899999999999888765 4444444444433332222235555544
No 52
>PRK09377 tsf elongation factor Ts; Provisional
Probab=75.17 E-value=3.1 Score=36.23 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccc
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (177)
.++|.+.++.||+.--.+.+-|+.++||++.|++--=..
T Consensus 6 ~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~ 44 (290)
T PRK09377 6 AALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKK 44 (290)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 468999999999999999999999999999999866443
No 53
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=75.03 E-value=6.5 Score=21.96 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHh-HcC
Q 030467 58 HLEELYNRYKDPYLDMILVDGITLLCN-DLQ 87 (177)
Q Consensus 58 ~l~~lF~~Y~d~~~d~I~~dG~~~~~e-dLg 87 (177)
++.++|+.|=......|+.+=+...+. .||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467788888333345888888888887 676
No 54
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=73.33 E-value=43 Score=26.69 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHhc--CCCC-CccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcC--CCcHHH
Q 030467 55 DTRHLEELYNRYK--DPYL-DMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG--IDSLDK 129 (177)
Q Consensus 55 ~~~~l~~lF~~Y~--d~~~-d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~--~dsl~~ 129 (177)
....+.+|.+.|. |++. ..|+-+-+..++..||.+|.+..+.-|-.-+.+ .-|.++-.+|+..|...- -++-++
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 4555666655555 4433 589999999999999999999888888888887 556777777777776643 233444
Q ss_pred HHHHHH
Q 030467 130 FRERIS 135 (177)
Q Consensus 130 lk~~l~ 135 (177)
++....
T Consensus 94 l~~aF~ 99 (160)
T COG5126 94 LREAFK 99 (160)
T ss_pred HHHHHH
Confidence 444443
No 55
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=72.61 E-value=0.99 Score=39.71 Aligned_cols=73 Identities=25% Similarity=0.502 Sum_probs=46.2
Q ss_pred CHHHHHHHH--HhCCCCccccchhhccccCCCCcCCHHHHHHHHHH--hcCCC--------CCccCHHHH-HHHHhHcCC
Q 030467 22 SEKAALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDPY--------LDMILVDGI-TLLCNDLQV 88 (177)
Q Consensus 22 s~~~A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~--Y~d~~--------~d~I~~dG~-~~~~edLgv 88 (177)
+..-++.+| +.++|.|. .+.||.-.+++..+-..+ ++||+. |+|.. .|.+-++-+ .+..++-||
T Consensus 82 td~P~iAcLgSQ~AGW~l~--~~~ffa~GSGPaRAla~k-e~l~~~l~Y~D~~~~avl~lE~~~lP~~~v~e~vA~~cgv 158 (317)
T PRK02264 82 TDHPALACLGSQKAGWSLS--VGKFFALGSGPARALALK-EELYEELGYRDDADFAVLVLESDKLPPEEVAEKVAEECGV 158 (317)
T ss_pred cCchHHHHHhccccCcccc--cCCEeeecCcHHHHHhhh-hHHHHHhCCccccCeEEEEEecCCCCCHHHHHHHHHHcCC
Confidence 334455566 45999995 588997766532222223 788887 66642 244444444 455589999
Q ss_pred CCCCHHHHH
Q 030467 89 DPQDIVMLV 97 (177)
Q Consensus 89 ~~ed~~~L~ 97 (177)
+|+++.+|+
T Consensus 159 ~p~~v~~lv 167 (317)
T PRK02264 159 DPENVYLLV 167 (317)
T ss_pred CHHHEEEEE
Confidence 999876554
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=71.43 E-value=13 Score=25.44 Aligned_cols=50 Identities=6% Similarity=0.090 Sum_probs=45.6
Q ss_pred CccCHHHHHHHHhHcCC-CCCCHHHHHHHHhhCcccc-ccccHHHHHhhhhh
Q 030467 72 DMILVDGITLLCNDLQV-DPQDIVMLVVSWHMKAATM-CEFSKQEFIGGLQS 121 (177)
Q Consensus 72 d~I~~dG~~~~~edLgv-~~ed~~~L~la~~l~a~~~-g~~tr~eF~~g~~~ 121 (177)
..|.+.-+..|+..+|- +|+|-.+=-|+-.+-...- |.+.++.|..-|+.
T Consensus 13 G~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 13 GRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred ceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 58999999999999999 9999999999999988887 99999999988874
No 57
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=71.15 E-value=2.9 Score=26.69 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHhCCCCccccchhh
Q 030467 20 GASEKAALQALKASDWHLEGAFDVF 44 (177)
Q Consensus 20 ~~s~~~A~~~L~~~~w~le~A~~~f 44 (177)
..++..-.+||++.+||++.|...+
T Consensus 28 ~~~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 28 DHDDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp S-SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 3467889999999999999998754
No 58
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=70.53 E-value=12 Score=25.90 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=32.0
Q ss_pred cHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccChhHHHHHHH
Q 030467 111 SKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYN 152 (177)
Q Consensus 111 tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~iY~ 152 (177)
|+.+|+--++ .|.|++.|-+.+..++..|+++.+--.+|+
T Consensus 2 tk~eyLlkfR--kcss~eTLEkv~e~~~y~L~~~~e~~~f~~ 41 (71)
T PRK10391 2 TVQDYLLKFR--KISSLESLEKLFDHLNYTLTDDQEIINMYR 41 (71)
T ss_pred cHHHHHHHHH--hcCcHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 7788876554 499999999999999999998766555554
No 59
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.70 E-value=3.9 Score=32.33 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCC-ccCHHHHHHHHhHcCCCCCCHH
Q 030467 59 LEELYNRYKDPYLD-MILVDGITLLCNDLQVDPQDIV 94 (177)
Q Consensus 59 l~~lF~~Y~d~~~d-~I~~dG~~~~~edLgv~~ed~~ 94 (177)
|-=||+.|.+.+.+ .++.|.+..-++|.|.+++|+-
T Consensus 5 l~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~dI~ 41 (157)
T COG2922 5 LMYLFETYIHNEAELPVDQDSLENDLEDAGFDREDIY 41 (157)
T ss_pred HHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHHHHH
Confidence 45589999987665 7899999999999999999863
No 60
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=67.41 E-value=20 Score=25.22 Aligned_cols=82 Identities=7% Similarity=-0.063 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHhh-CccccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccChhHHHHHHHHHhhhhhccCCccc
Q 030467 88 VDPQDIVMLVVSWHM-KAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNFAFAWAKEKVIVFL 166 (177)
Q Consensus 88 v~~ed~~~L~la~~l-~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~iY~ftF~f~~~~gqk~L 166 (177)
++++++..+.-+... -...-|.|+.+++...|..+|++ -+.++.-+......-...-.|.+|+...-.-.+-...+.|
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~-~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~ 82 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP-QTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI 82 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 445555555555433 44578999999999999998863 3444444443322222222377777766666665555556
Q ss_pred ChHh
Q 030467 167 FLRI 170 (177)
Q Consensus 167 ~le~ 170 (177)
|.++
T Consensus 83 ~~~~ 86 (96)
T smart00027 83 PASL 86 (96)
T ss_pred CccC
Confidence 5544
No 61
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=67.36 E-value=15 Score=27.10 Aligned_cols=65 Identities=11% Similarity=0.221 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhh-CccccccccHHHHHhhhhhc
Q 030467 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHM-KAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 54 ~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l-~a~~~g~~tr~eF~~g~~~l 122 (177)
.....-.++|+... +..+.|+.+....++..=|++.+ +|.=-|-| -...-|.++++||+-+|+-+
T Consensus 7 ~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~---~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 7 EEKQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRD---VLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHH---HHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHH---HHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 34677788999874 55579999999999999999865 55555544 46688999999999999875
No 62
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=65.89 E-value=8.4 Score=24.76 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHhhCCCHHHHHHHHHh
Q 030467 11 KLQQFVSITGASEKAALQALKA 32 (177)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~ 32 (177)
.+.+|.+.+|+|.+.|+.+|+-
T Consensus 12 tv~~~rd~lg~sRK~ai~lLE~ 33 (50)
T PF09107_consen 12 TVAEFRDLLGLSRKYAIPLLEY 33 (50)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHH
T ss_pred cHHHHHHHHCccHHHHHHHHHH
Confidence 3789999999999999999985
No 63
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=65.30 E-value=6.8 Score=34.73 Aligned_cols=36 Identities=28% Similarity=0.198 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccch
Q 030467 7 SNRDKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (177)
Q Consensus 7 ~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (177)
.++++|.+.++=||++-.....-|+.+||||..|..
T Consensus 45 ~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 45 SSKALLKKLREKTGASMVNCKKALEECGGDLVLAEE 80 (340)
T ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHH
Confidence 578999999999999999999999999999988753
No 64
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=63.51 E-value=29 Score=28.12 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhH--cCCCC----CCHHHHHHHHhhCccccccccHHHH
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCND--LQVDP----QDIVMLVVSWHMKAATMCEFSKQEF 115 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~ed--Lgv~~----ed~~~L~la~~l~a~~~g~~tr~eF 115 (177)
.+.+.+++|.+|....+|.+...-+.++... .=.|| ....-..+.|.|-.+.-|...||.=
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~i 160 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDI 160 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHH
Confidence 4899999999998766788999988888865 22233 2345567778888888888887753
No 65
>PLN02964 phosphatidylserine decarboxylase
Probab=62.79 E-value=42 Score=32.49 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCC-CccCHHHHHHHHhHcC-CCCCCHH---HHHHHHhhCccccccccHHHHHhhhhhcCC-CcHHHH
Q 030467 57 RHLEELYNRYKDPYL-DMILVDGITLLCNDLQ-VDPQDIV---MLVVSWHMKAATMCEFSKQEFIGGLQSLGI-DSLDKF 130 (177)
Q Consensus 57 ~~l~~lF~~Y~d~~~-d~I~~dG~~~~~edLg-v~~ed~~---~L~la~~l~a~~~g~~tr~eF~~g~~~l~~-dsl~~l 130 (177)
..+.+.|+.+ |++. ..| +-..+..|| ++|++-. +-.+-..+....-|.|+.+||+..+..++. ++-+++
T Consensus 143 ~elkeaF~lf-D~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 143 ESACESFDLL-DPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHH-CCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 4455566665 4433 344 667788999 5887664 223333456677899999999999998874 566677
Q ss_pred HHHHHHHHHHcc---ChhHHHHHHHH
Q 030467 131 RERISFMRAELK---DEQKFREIYNF 153 (177)
Q Consensus 131 k~~l~~l~~~l~---~~~~Fk~iY~f 153 (177)
+..+..++.+=. +.++|+++..-
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 777766654332 33446655544
No 66
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=62.54 E-value=9.7 Score=32.96 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcc
Q 030467 11 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46 (177)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (177)
+++=.+++||++...|...|++++|++-.|+-.--.
T Consensus 238 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~~~ 273 (299)
T PRK05441 238 AVRIVMEATGVSREEAEAALEAADGSVKLAIVMILT 273 (299)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 456688999999999999999999999999876644
No 67
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=61.10 E-value=37 Score=26.86 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccc---------------------cccHH
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMC---------------------EFSKQ 113 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g---------------------~~tr~ 113 (177)
....+.++|+-|-...+..|+...+---+..||-+|.+-.++-..-...+..|+ ..|-+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 346777778777544446999999999999999999887777666555555322 34556
Q ss_pred HHHhhhhhcCCC-----cHHHHHHHHHHHHHHccC
Q 030467 114 EFIGGLQSLGID-----SLDKFRERISFMRAELKD 143 (177)
Q Consensus 114 eF~~g~~~l~~d-----sl~~lk~~l~~l~~~l~~ 143 (177)
+|++|++...-+ .-..||..|-+|-..|.+
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~e 123 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTE 123 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccH
Confidence 666666654221 245677778777777754
No 68
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=61.00 E-value=1.9 Score=37.85 Aligned_cols=73 Identities=21% Similarity=0.433 Sum_probs=43.8
Q ss_pred HHHHHHHH--HhCCCCccccchhhccccCCCCcCCHHHHHHHHHH--hcCCC--------CCccCHHH-HHHHHhHcCCC
Q 030467 23 EKAALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDPY--------LDMILVDG-ITLLCNDLQVD 89 (177)
Q Consensus 23 ~~~A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~--Y~d~~--------~d~I~~dG-~~~~~edLgv~ 89 (177)
..-|+.+| +..+|.|. .+.||.-.++....-..+=+++|++ |+|.. .|.+-++- +.+..++-||+
T Consensus 81 d~P~iAcLgSQ~AGW~l~--~~~ffamGSGPaRAla~kpe~ly~~l~Y~D~~~~avl~lE~~~lP~~~v~~~vA~~cgv~ 158 (312)
T cd00545 81 DNPVIACLGSQYAGWSLS--VGDFFALGSGPARALALKPEELYEEIGYRDDAEVAVLVLESDKLPPEEVAEKVAAECGVD 158 (312)
T ss_pred CcHHHHHhcccccCcccc--cCCEeEecCchHHHhhcCcHHHHHHhCCccccceEEEEEecCCCCCHHHHHHHHHHcCCC
Confidence 34455566 55999994 8899977655211110111577777 55542 23444444 44556899999
Q ss_pred CCCHHHHH
Q 030467 90 PQDIVMLV 97 (177)
Q Consensus 90 ~ed~~~L~ 97 (177)
|+++.+|+
T Consensus 159 p~~l~~lv 166 (312)
T cd00545 159 PENVTLIV 166 (312)
T ss_pred HHHEEEEE
Confidence 99876554
No 69
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=60.60 E-value=11 Score=32.69 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcc
Q 030467 11 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46 (177)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (177)
+++-.+++||++...|...|.+++|++-.|+-.--.
T Consensus 233 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~~ 268 (291)
T TIGR00274 233 AVRIVRQATDCNKELAEQTLLAADQNVKLAIVMILS 268 (291)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 455688899999999999999999999998876533
No 70
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=60.11 E-value=2.1 Score=37.70 Aligned_cols=74 Identities=16% Similarity=0.443 Sum_probs=44.3
Q ss_pred CHHHHHHHH--HhCCCCccccchhhccccCCCCcCCHHHHHHHHHH--hcCCC--------CCccCHHHH-HHHHhHcCC
Q 030467 22 SEKAALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDPY--------LDMILVDGI-TLLCNDLQV 88 (177)
Q Consensus 22 s~~~A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~--Y~d~~--------~d~I~~dG~-~~~~edLgv 88 (177)
+..-|+.+| +..+|.|. .+.||.-.++....-..+=+++|++ |+|.. .|.+-++-+ .+..++-||
T Consensus 80 td~P~iAcLgSQ~AGW~l~--~~~ffamGSGPaRAla~kpe~ly~~l~Y~d~~~~avl~lE~~~lP~~~v~~~vA~~cgv 157 (312)
T TIGR03120 80 TDHPVIACLGSQKAGWQVK--VGKYFAMGSGPARALALKPKETYEEIGYEDDSDVAVIVLESDKLPDEEVAEYIADECGV 157 (312)
T ss_pred eCcHHHHHhhccccCcccc--cCCEeEecCchHHHhhcCcHHHHHHhCCcccCceEEEEEecCCCCCHHHHHHHHHHcCC
Confidence 334455566 55999994 8999987655211110011577777 55542 234444444 455589999
Q ss_pred CCCCHHHHH
Q 030467 89 DPQDIVMLV 97 (177)
Q Consensus 89 ~~ed~~~L~ 97 (177)
+|+++.+|+
T Consensus 158 ~p~~l~~lv 166 (312)
T TIGR03120 158 DPENLTLLV 166 (312)
T ss_pred CHHHEEEEE
Confidence 999876554
No 71
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=59.91 E-value=64 Score=25.85 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCC----CccCHHHHHHHHh---HcCC-CCCCHHHHHHHHhh-----Cccccc-cccHHHHHhhhhh
Q 030467 56 TRHLEELYNRYKDPYL----DMILVDGITLLCN---DLQV-DPQDIVMLVVSWHM-----KAATMC-EFSKQEFIGGLQS 121 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~----d~I~~dG~~~~~e---dLgv-~~ed~~~L~la~~l-----~a~~~g-~~tr~eF~~g~~~ 121 (177)
...|..++.+++=|++ |.|-..=..+||+ +... +++.+-+|+-|..| +.+.+. .+|+++|++..+.
T Consensus 82 ~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~~ 161 (185)
T cd00171 82 DEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLRG 161 (185)
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHhc
Confidence 4455555555555432 1221122233443 2333 67777777777654 555545 7899999998887
Q ss_pred cC
Q 030467 122 LG 123 (177)
Q Consensus 122 l~ 123 (177)
..
T Consensus 162 ~~ 163 (185)
T cd00171 162 IN 163 (185)
T ss_pred cc
Confidence 54
No 72
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=59.57 E-value=27 Score=22.26 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=35.6
Q ss_pred hhCccccccccHHHHHhhhhhcCCCc-HHHHHHHHHHHHHHccChh----HHHHHHHH
Q 030467 101 HMKAATMCEFSKQEFIGGLQSLGIDS-LDKFRERISFMRAELKDEQ----KFREIYNF 153 (177)
Q Consensus 101 ~l~a~~~g~~tr~eF~~g~~~l~~ds-l~~lk~~l~~l~~~l~~~~----~Fk~iY~f 153 (177)
.+-...-|.|+++||...++.++... -..++..+..+-+.+..+. .|.++..+
T Consensus 8 ~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 8 KFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 45566779999999999999998654 5556666666666653221 25555544
No 73
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=58.22 E-value=13 Score=32.30 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcc
Q 030467 11 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46 (177)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (177)
+++-.+++||+++..|...|.+++|++-.|+-.--.
T Consensus 234 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 234 AVRIVMQATGCSEDEAKELLKESDNDVKLAILMILT 269 (296)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhCCccHHHHHHHHh
Confidence 456688999999999999999999999999876543
No 74
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=56.60 E-value=72 Score=23.82 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHhcCCCC-CccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhh
Q 030467 55 DTRHLEELYNRYKDPYL-DMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQ 120 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~-d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~ 120 (177)
....|.-.|.++ |.+. +.|+.+=+..++ +.+....+-.+-..+.+-.=|.||.+||..++.
T Consensus 46 ~~~~l~w~F~~l-D~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQL-DGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHH-CCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 457788899999 4444 589999888877 445444444566677888999999999999983
No 75
>PRK10945 gene expression modulator; Provisional
Probab=56.30 E-value=22 Score=24.74 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=31.4
Q ss_pred ccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccChhHHHHHHH
Q 030467 110 FSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYN 152 (177)
Q Consensus 110 ~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~iY~ 152 (177)
.|+.+|+--+.+ |.|++.|-+.+..++..|+++ ++-.||.
T Consensus 6 Mtk~dyL~~fRr--css~eTLEkvie~~~~~L~~~-E~~~f~~ 45 (72)
T PRK10945 6 LTKTDYLMRLRR--CQTIDTLERVIEKNKYELSDD-ELAVFYS 45 (72)
T ss_pred ccHHHHHHHHHh--cCcHHHHHHHHHHhhccCCHH-HHHHHHH
Confidence 489999876654 999999999999999999873 4545543
No 76
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=56.29 E-value=62 Score=23.35 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcC
Q 030467 8 NRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQ 87 (177)
Q Consensus 8 q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLg 87 (177)
+.+.+..|+..||+++..=+.-.. ++.=|..+-|-+-..+ .=++.||+.+|
T Consensus 20 d~e~l~rFLa~TG~~p~~LR~~a~-----------------------dp~FL~~VLdFl~~de------~~l~af~~a~~ 70 (88)
T PF12096_consen 20 DPERLPRFLALTGLSPDDLRAAAG-----------------------DPAFLAAVLDFLLMDE------AWLLAFCDAAG 70 (88)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHcc-----------------------ChHHHHHHHHHHHcch------HHHHHHHHHcC
Confidence 356778888888888776333221 3334444555544322 45789999999
Q ss_pred CCCCCHH
Q 030467 88 VDPQDIV 94 (177)
Q Consensus 88 v~~ed~~ 94 (177)
++|+.|.
T Consensus 71 ~~p~~v~ 77 (88)
T PF12096_consen 71 IPPEAVA 77 (88)
T ss_pred cChhHHH
Confidence 9998443
No 77
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=54.01 E-value=10 Score=26.04 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHH
Q 030467 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVM 95 (177)
Q Consensus 57 ~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~ 95 (177)
.-|-.+|--|--+.++.|.+.+++.+++++||++..+.+
T Consensus 4 Sli~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv~e~avR~ 42 (70)
T PF07848_consen 4 SLIVTLLGDYLRPRGGWIWVASLIRLLAAFGVSESAVRT 42 (70)
T ss_dssp HHHHHHHHHHCCTTTS-EEHHHHHHHHCCTT--HHHHHH
T ss_pred eehHHHHHHHhccCCCceeHHHHHHHHHHcCCChHHHHH
Confidence 346678888887777899999999999999999876554
No 78
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=53.28 E-value=20 Score=26.34 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=45.0
Q ss_pred HHHHHHhHcCCCC---CCHHHHHHHHhhCccccccccHHHHHhhhhhc-C----CCcHHHHHHHHHHHHHHccChhHH
Q 030467 78 GITLLCNDLQVDP---QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL-G----IDSLDKFRERISFMRAELKDEQKF 147 (177)
Q Consensus 78 G~~~~~edLgv~~---ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l-~----~dsl~~lk~~l~~l~~~l~~~~~F 147 (177)
-+++|..+ .++| +.|..||.+-. -|.|+-|||...++.. + -.=++=||+.||.||+++.+...|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~-----~~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLV-----DGKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHH-----TTSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 35677777 5555 34566665543 4678999999999883 2 344889999999999999876655
No 79
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=52.82 E-value=10 Score=28.84 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccc
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (177)
+..+.++.|.+++.+.++.++.||.++.+...|--+
T Consensus 100 ~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~ 135 (143)
T PF10075_consen 100 LSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPN 135 (143)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecC
Confidence 567788899999999999999999998777666433
No 80
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=52.58 E-value=37 Score=21.32 Aligned_cols=34 Identities=12% Similarity=-0.048 Sum_probs=24.1
Q ss_pred CccccccccHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 030467 103 KAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFM 137 (177)
Q Consensus 103 ~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l 137 (177)
....-|.|+.+|+..-+..+|. +-+.++..+..+
T Consensus 9 D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~ 42 (67)
T cd00052 9 DPDGDGLISGDEARPFLGKSGL-PRSVLAQIWDLA 42 (67)
T ss_pred CCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 4456789999999999999886 544454444433
No 81
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=49.30 E-value=37 Score=27.43 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=54.6
Q ss_pred CccHHHHHHHHHHhhCCCHHHHHHHHHhCCCC-ccccchh-hccccCCCCcCCHHHHHHHHHHhcCCCCC----------
Q 030467 5 SRSNRDKLQQFVSITGASEKAALQALKASDWH-LEGAFDV-FYSQPQSKSLTDTRHLEELYNRYKDPYLD---------- 72 (177)
Q Consensus 5 ~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~-le~A~~~-ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d---------- 72 (177)
+...++....+..+-|.-++.|...|+..+.+ +..|+.. -...-..-+...++..+++...+++...+
T Consensus 65 ~~~ek~~f~~L~~i~GIGpk~A~~il~~fg~~~l~~~i~~~d~~~L~~v~Gig~k~A~~I~~~l~~~~~~~~~~~~~~~~ 144 (192)
T PRK00116 65 TKEERELFRLLISVSGVGPKLALAILSGLSPEELVQAIANGDVKALTKVPGIGKKTAERIVLELKDKLAAAASAAAAAAA 144 (192)
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 44455667788889999999999999988752 2222221 10000112445667777777766643110
Q ss_pred -ccCHHHHHHHHhHcCCCCCCHHHHHH
Q 030467 73 -MILVDGITLLCNDLQVDPQDIVMLVV 98 (177)
Q Consensus 73 -~I~~dG~~~~~edLgv~~ed~~~L~l 98 (177)
....+-++..+..||+++..+...+=
T Consensus 145 ~~~~~~ev~~aL~~LG~~~~~a~~~~~ 171 (192)
T PRK00116 145 ASSALEEAVSALVALGYKPKEASKAVA 171 (192)
T ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00145666777777777765544443
No 82
>PRK13749 transcriptional regulator MerD; Provisional
Probab=49.17 E-value=1.1e+02 Score=23.02 Aligned_cols=69 Identities=6% Similarity=-0.054 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCC
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~e 91 (177)
|.++...||+|..+=+.| ++.|= |. .+.+..+.+ -.|. ++.+.-=..++.|.++|++++
T Consensus 6 IgelA~~~gvS~~tiR~Y-E~~GL-l~--------p~~r~~~gy--------R~Y~---~~~l~rL~~I~~~r~~G~sL~ 64 (121)
T PRK13749 6 VSRLALDAGVSVHIVRDY-LLRGL-LR--------PVACTTGGY--------GLFD---DAALQRLCFVRAAFEAGIGLD 64 (121)
T ss_pred HHHHHHHHCCCHHHHHHH-HHCCC-CC--------CCCcCCCCC--------ccCC---HHHHHHHHHHHHHHHcCCCHH
Confidence 889999999998875544 44441 11 111100001 0111 112333367888899999999
Q ss_pred CHHHHHHHHh
Q 030467 92 DIVMLVVSWH 101 (177)
Q Consensus 92 d~~~L~la~~ 101 (177)
++.-|.=++-
T Consensus 65 eI~~ll~l~~ 74 (121)
T PRK13749 65 ALARLCRALD 74 (121)
T ss_pred HHHHHHhhhc
Confidence 9988777763
No 83
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=49.09 E-value=40 Score=31.30 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccCh------h
Q 030467 72 DMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDE------Q 145 (177)
Q Consensus 72 d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~------~ 145 (177)
..+.+|-..+|.++|..+.-.+.. ..+.. ..-|.||...|-.-+-.+-.-+.++...++.+++.+..+. .
T Consensus 301 ~kLs~deF~~F~e~Lq~Eil~lEF---~~~~~-~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~ 376 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQEEILELEF---ERFDK-GDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQ 376 (489)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH---HHhCc-ccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHH
Confidence 478999999999999877433333 33332 2339999999999998887667777777888888888652 3
Q ss_pred HHHHHHHHHhhhh
Q 030467 146 KFREIYNFAFAWA 158 (177)
Q Consensus 146 ~Fk~iY~ftF~f~ 158 (177)
+|+.|++|..+.+
T Consensus 377 Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 377 EFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHhhhh
Confidence 5999999986654
No 84
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=49.00 E-value=9.5 Score=24.45 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHH
Q 030467 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIV 94 (177)
Q Consensus 54 ~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~ 94 (177)
.+...+.+++..- ...+..+-+.++|+-||++|+++.
T Consensus 22 is~~tl~~~~~~~----~~~~~~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 22 ISRSTLSRILNGK----PSNPSLDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp --HHHHHHHHTTT---------HHHHHHHHHHHT--HHHCT
T ss_pred cCHHHHHHHHhcc----cccccHHHHHHHHHHcCCCHHHHh
Confidence 3455666666532 246889999999999999998753
No 85
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=47.71 E-value=20 Score=31.38 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccc
Q 030467 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (177)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (177)
-+.|.+.++.||+.--.+.+-|..++.|+|.|++---..
T Consensus 6 a~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~k 44 (296)
T COG0264 6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREK 44 (296)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 467999999999999999999999999999999876543
No 86
>PLN02223 phosphoinositide phospholipase C
Probab=47.40 E-value=43 Score=31.72 Aligned_cols=68 Identities=6% Similarity=-0.073 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHc-------CCCCCCHHHHHHHHhh------CccccccccHHHHHhhh
Q 030467 53 LTDTRHLEELYNRYKDPYLDMILVDGITLLCNDL-------QVDPQDIVMLVVSWHM------KAATMCEFSKQEFIGGL 119 (177)
Q Consensus 53 ~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edL-------gv~~ed~~~L~la~~l------~a~~~g~~tr~eF~~g~ 119 (177)
...+..+.++|++|.+ +.+.++.+++.+|+.=| +...++...++=...- +...-+.++.++|..=+
T Consensus 12 ~~~p~~v~~~f~~~~~-~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEFH-GYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 3467889999999975 35689999999999333 4555555554433211 11122346777777665
Q ss_pred hh
Q 030467 120 QS 121 (177)
Q Consensus 120 ~~ 121 (177)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 44
No 87
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.88 E-value=1.1e+02 Score=28.81 Aligned_cols=98 Identities=22% Similarity=0.369 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCC--HHHHHHHHhhCcccc-----------------c-----ccc
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD--IVMLVVSWHMKAATM-----------------C-----EFS 111 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed--~~~L~la~~l~a~~~-----------------g-----~~t 111 (177)
.+.|+.|-++=-|+..++-+...|.-|||-++-+|++ +.+-.||.++.+|+- | +.-
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evg 85 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVG 85 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4568888888888877888899999999999999988 456779999999861 1 133
Q ss_pred HHHHHhhhhh------cCCCcHHHHHHHHHHHHHHc----cChhHHHHHHHH
Q 030467 112 KQEFIGGLQS------LGIDSLDKFRERISFMRAEL----KDEQKFREIYNF 153 (177)
Q Consensus 112 r~eF~~g~~~------l~~dsl~~lk~~l~~l~~~l----~~~~~Fk~iY~f 153 (177)
|--|++-+-+ +|--+-+++|.+|-+|-=.. .+..+.|+.|.-
T Consensus 86 kfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe~~KikdaYqm 137 (594)
T KOG1086|consen 86 KFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPEEPKIKDAYQM 137 (594)
T ss_pred HHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcccchHHHHHHH
Confidence 4456665544 34456777888776655443 455667777764
No 88
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=46.63 E-value=11 Score=33.81 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHH
Q 030467 79 ITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEF 115 (177)
Q Consensus 79 ~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF 115 (177)
+..+|.++|+|.-+.-. +|||.+.+-.-|.|++++.
T Consensus 116 ~~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 116 ANDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 45689999999865553 8999999999999999988
No 89
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=46.48 E-value=29 Score=30.30 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhcccc
Q 030467 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQP 48 (177)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (177)
.+++-.+++||++.+.|.++|+.++.++-.||-.....-
T Consensus 235 Ra~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~~~~~ 273 (298)
T COG2103 235 RAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVMLLTGL 273 (298)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHHHhCC
Confidence 357788999999999999999999999999988775543
No 90
>PHA01083 hypothetical protein
Probab=46.40 E-value=30 Score=27.42 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=41.4
Q ss_pred ccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc---CCCcHH
Q 030467 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL---GIDSLD 128 (177)
Q Consensus 73 ~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l---~~dsl~ 128 (177)
.|+-+-+.++++-+|+||+.+...+.+.+-+.|.. |.-|..-++++ |..+|.
T Consensus 43 ~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKlnglgl~~is 97 (149)
T PHA01083 43 YISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQNGLGLRTIS 97 (149)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHhccchhHHH
Confidence 47788899999999999999999999998888775 56677666664 455544
No 91
>PLN02230 phosphoinositide phospholipase C 4
Probab=46.04 E-value=54 Score=31.49 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCC-----CCHHHHHHHHhhC-----ccccccccHHHHHhhhhh
Q 030467 53 LTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDP-----QDIVMLVVSWHMK-----AATMCEFSKQEFIGGLQS 121 (177)
Q Consensus 53 ~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~-----ed~~~L~la~~l~-----a~~~g~~tr~eF~~g~~~ 121 (177)
...+..+..||.+|.+.. +.++.+++.+|+.+-+=++ ++..-++....-. ...-+.+|.++|..-+..
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 345789999999997643 6999999999998877332 3233333222111 112345899999886654
No 92
>KOG4511 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.01 E-value=9.4 Score=33.32 Aligned_cols=66 Identities=15% Similarity=0.330 Sum_probs=41.9
Q ss_pred HHHHhCCCCccccchhhccccCC---CCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHH
Q 030467 28 QALKASDWHLEGAFDVFYSQPQS---KSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSW 100 (177)
Q Consensus 28 ~~L~~~~w~le~A~~~ff~~~~~---~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~ 100 (177)
.||....|++ .|..|-++.+. ...........+-..|+.= | -.=+.-||+++||+|+..+.-|...
T Consensus 18 ~Fl~gpiWsi--Pi~~FIEqks~VFD~~qe~~~~y~~IH~EYk~L----V-d~lle~f~eevgi~p~qf~~Ac~~~ 86 (335)
T KOG4511|consen 18 EFLTGPIWSI--PIASFIEQKSVVFDRQQEETDVYIMIHKEYKQL----V-DTLLECFCEEVGITPTQFVAACQLF 86 (335)
T ss_pred HHHhCccccc--hHHHHHHHhhhccChhhcccchHHHHHHHHHHH----H-HHHHHHHHHHhCCCHHHHHHHHhcc
Confidence 4788888987 67788776542 0111233445566666541 1 1236779999999999777766655
No 93
>COG3252 Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]
Probab=45.73 E-value=5.9 Score=34.26 Aligned_cols=84 Identities=15% Similarity=0.351 Sum_probs=48.5
Q ss_pred CCHHHHHHHH--HhCCCCccccchhhccccCCCCcCCHHHHHHHHHH--hcCC--------CCCccCHHHHHHHH-hHcC
Q 030467 21 ASEKAALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDP--------YLDMILVDGITLLC-NDLQ 87 (177)
Q Consensus 21 ~s~~~A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~--Y~d~--------~~d~I~~dG~~~~~-edLg 87 (177)
++..-|+..| ++.+|.+ ++..||.-.+++...-..+=.+.|+. |.|. ..+.+.-+-...+. +.-|
T Consensus 80 ~td~Paia~lgaQkAGW~v--~VgdyfamGSGPARAL~lkpketyeeI~YeDdadvAvL~lEs~~LP~e~vae~vA~ecg 157 (314)
T COG3252 80 ATDHPAIATLGAQKAGWQV--SVGDYFAMGSGPARALALKPKETYEEIGYEDDADVAVLTLESDKLPDEKVAEYVAKECG 157 (314)
T ss_pred ecCCcHHHHhhhhhcCceE--eecceeeccCchhhhhhcCcchhhhhcCcccccceEEEEEecCCCCchHHHHHHHHHcC
Confidence 3444455555 6699987 89999987655222111111234554 5553 12445555566665 7899
Q ss_pred CCCCCHHHHH--HHHhhCccc
Q 030467 88 VDPQDIVMLV--VSWHMKAAT 106 (177)
Q Consensus 88 v~~ed~~~L~--la~~l~a~~ 106 (177)
|+||++-.|+ -|...|+-+
T Consensus 158 V~~EnVyllvapTASivGSvq 178 (314)
T COG3252 158 VEPENVYLLVAPTASIVGSVQ 178 (314)
T ss_pred CChhheEEEeccchheeeeEE
Confidence 9999976554 244555433
No 94
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=45.48 E-value=3.4 Score=27.74 Aligned_cols=59 Identities=10% Similarity=0.232 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHhHcCCCCCCHHHHHHHHhh--CccccccccHHHHHhhhhhcCCCcHHHHHHHH
Q 030467 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHM--KAATMCEFSKQEFIGGLQSLGIDSLDKFRERI 134 (177)
Q Consensus 73 ~I~~dG~~~~~edLgv~~ed~~~L~la~~l--~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l 134 (177)
....+-+.+++++.|.+|+ ++..++-+-+ +..+... -+.-++.|..-|+.|+++..++.
T Consensus 15 ~~e~~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Y--i~~Il~~W~~~gi~t~e~~~~~~ 75 (77)
T PF07261_consen 15 PSEIEKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNY--IEKILNNWKQKGIKTVEDAEEYE 75 (77)
T ss_dssp HHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHH--HHHHHHHHHHCT--SCCCCT---
T ss_pred HHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHH--HHHHHHHHHHcCCCCHHHHHHHh
Confidence 4556677777776666665 4444444444 2233222 23566779999998877655543
No 95
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=45.12 E-value=41 Score=22.63 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHhhCC-CHHHHHHHHHhCCCCccccchhhccc
Q 030467 6 RSNRDKLQQFVSITGA-SEKAALQALKASDWHLEGAFDVFYSQ 47 (177)
Q Consensus 6 ~~q~~~i~~F~~~T~~-s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (177)
++-+..|+...++||. |++.--.-|+.+|-|-+.|++.-..+
T Consensus 3 ~~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 3 AASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4456789999999999 99999999999999999998776553
No 96
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=44.49 E-value=16 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.2
Q ss_pred HhhCCCHHHHHHHHHhCCCCcc
Q 030467 17 SITGASEKAALQALKASDWHLE 38 (177)
Q Consensus 17 ~~T~~s~~~A~~~L~~~~w~le 38 (177)
+++|-+...|...|++++|+++
T Consensus 5 d~~g~~~~~a~~~l~~~g~~~~ 26 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAAGLTVN 26 (63)
T ss_dssp TTTTSBHHHHHHHHHHTT-EEE
T ss_pred CcCCCcHHHHHHHHHHCCCEEE
Confidence 4789999999999999999553
No 97
>KOG4380 consensus Carnitine deficiency associated protein [General function prediction only]
Probab=43.96 E-value=48 Score=27.57 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=44.8
Q ss_pred hhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCC-CC----Cc---cCHHHHHHHHhHcCCC
Q 030467 18 ITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDP-YL----DM---ILVDGITLLCNDLQVD 89 (177)
Q Consensus 18 ~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~-~~----d~---I~~dG~~~~~edLgv~ 89 (177)
+.|+|...|+.|| |+.|+..-|.+......--.+.-++.-+--.+. .| |. ==.+|.+.+|.=|||+
T Consensus 71 ~~~~~R~~AID~~------L~~AV~~~Y~~~~~~~~~~~~~~~K~~~~~~~~~~PL~~LD~~~P~F~~~~~AL~~iL~I~ 144 (244)
T KOG4380|consen 71 FKIQDRQEAIDWL------LGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMALANLLQIQ 144 (244)
T ss_pred cccccHHHHHHHH------HHHHHHHHHHhcccchhhhhhhhHHHHHhhhcccCchhhcCCCCccHHHHHHHHHHHhccc
Confidence 3677888888765 677888888765432110011111122211111 11 11 1147999999999998
Q ss_pred C-CCHHHH-HHHHhhCccccc
Q 030467 90 P-QDIVML-VVSWHMKAATMC 108 (177)
Q Consensus 90 ~-ed~~~L-~la~~l~a~~~g 108 (177)
. .|+.++ --+..+=++..|
T Consensus 145 ~H~D~~VmmKA~~i~i~E~L~ 165 (244)
T KOG4380|consen 145 RHDDYLVMLKAIRILVQERLT 165 (244)
T ss_pred cCCCHHHHHHHHHHHHHHHhh
Confidence 7 555443 333344444444
No 98
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=42.97 E-value=47 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=17.6
Q ss_pred CCCcHHHHHHH-------HHHHHHHccChhHHHHHHHHH
Q 030467 123 GIDSLDKFRER-------ISFMRAELKDEQKFREIYNFA 154 (177)
Q Consensus 123 ~~dsl~~lk~~-------l~~l~~~l~~~~~Fk~iY~ft 154 (177)
.|.|+.+|-.. |..|.++++. +.||-||-=|
T Consensus 24 ~l~svgd~e~eLerCK~sirrLeqevnk-ERFrmiYLQT 61 (79)
T PF09036_consen 24 ELRSVGDIEQELERCKASIRRLEQEVNK-ERFRMIYLQT 61 (79)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45565555544 4455555433 5699999766
No 99
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=42.24 E-value=14 Score=30.69 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=35.2
Q ss_pred CCCccHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhc
Q 030467 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYK 67 (177)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~ 67 (177)
.++++|++.+.+++.++ +.+.|.+||+.- +.-+-.| +....+.|.+||-+=+
T Consensus 47 ~~~~eq~~ll~~i~~i~--~~~~~~~~L~~L----~~yV~pF-------~~~t~~qi~kLF~K~K 98 (208)
T PF07299_consen 47 ELTEEQKELLEQIMDIK--TREEAEKYLEEL----KPYVIPF-------PPITEKQIKKLFPKAK 98 (208)
T ss_dssp TTTHHHCCHHHHHTSTT---HHHHHHHHHHH----HCCB--------------HHHHHHHTTTSS
T ss_pred cCCHHHHHHHHHHhccC--CHHHHHHHHHHH----HHHhcCC-------CCCCHHHHHHHhhhhh
Confidence 57888999999998888 899999999863 3333334 4557899999997643
No 100
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=41.45 E-value=34 Score=27.63 Aligned_cols=57 Identities=33% Similarity=0.513 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhc
Q 030467 7 SNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYK 67 (177)
Q Consensus 7 ~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~ 67 (177)
+..+.|.-|+.+-..+. .-...|+.++| .++...|+.|.-+...+..+|.+-|++|+
T Consensus 119 se~~Ql~af~~Fi~~~~-~L~~aLr~~dW---~~fAr~YNGp~y~~n~Yd~kl~~ay~~~~ 175 (175)
T PF11860_consen 119 SEAAQLDAFVRFIKANP-ALLKALRAKDW---AAFARGYNGPGYAKNQYDTKLARAYARFS 175 (175)
T ss_pred CHHHHHHHHHHHHHcCH-HHHHHHHhCCH---HHHHHHcCCchhhhccHHHHHHHHHHhcC
Confidence 44556777777776654 24568899999 78889998886545578999999999984
No 101
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=41.39 E-value=22 Score=25.05 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=24.6
Q ss_pred CCCccH-HHHHHHHHHhhCCCHHHHHHHHHhCCCCccccc
Q 030467 3 KLSRSN-RDKLQQFVSITGASEKAALQALKASDWHLEGAF 41 (177)
Q Consensus 3 ~l~~~q-~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~ 41 (177)
++++.| -+.+.++..+...++..|+++|.+|. .|-.|+
T Consensus 25 ~l~~~ql~ell~~mK~l~~~~p~~ar~lL~~nP-qLa~Al 63 (84)
T PF14327_consen 25 SLPPEQLYELLSQMKQLAQQNPEQARQLLQQNP-QLAYAL 63 (84)
T ss_dssp TSHHHHHHHHHHHHHHHHC----HHHHHHHS-T-HHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc-HHHHHH
Confidence 455554 45678999999999999999999987 555444
No 102
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=39.90 E-value=70 Score=20.76 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=37.7
Q ss_pred CCHHHHHHHHhhCccccccccHHHHHhh-hhhcC-CCcHHHHHHHHHHHHHHccC
Q 030467 91 QDIVMLVVSWHMKAATMCEFSKQEFIGG-LQSLG-IDSLDKFRERISFMRAELKD 143 (177)
Q Consensus 91 ed~~~L~la~~l~a~~~g~~tr~eF~~g-~~~l~-~dsl~~lk~~l~~l~~~l~~ 143 (177)
..-..-+|+.++..+.. .+|+++..+- |..-. ..+...++.+|..||+.|.+
T Consensus 7 t~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 7 TPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred CHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 34455577888877655 8999999986 65432 34567789999999999864
No 103
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=38.64 E-value=1.8e+02 Score=23.60 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhh
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~ 121 (177)
....|...|.-+.+.....|.+.-+-+....||=+..|-.+--...-..--.-|+++-+||+.-|+.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 4566777777766655569999999999999999998887776666666677889999999988765
No 104
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=38.32 E-value=1.8e+02 Score=23.59 Aligned_cols=51 Identities=10% Similarity=-0.002 Sum_probs=26.7
Q ss_pred cCHHHHHHHHhHcCCCCCCHHHHHHHHhh-CccccccccHHHHHhhhhhcCC
Q 030467 74 ILVDGITLLCNDLQVDPQDIVMLVVSWHM-KAATMCEFSKQEFIGGLQSLGI 124 (177)
Q Consensus 74 I~~dG~~~~~edLgv~~ed~~~L~la~~l-~a~~~g~~tr~eF~~g~~~l~~ 124 (177)
|+.+.-++++.-.-.....-.=+-+|.++ --...|.|+|+++..-+..+-.
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 66666666665443322211133344433 3455667777777777766533
No 105
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=38.29 E-value=27 Score=27.53 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCC-ccCHHHHHHHHhHcCCCCCCHH
Q 030467 59 LEELYNRYKDPYLD-MILVDGITLLCNDLQVDPQDIV 94 (177)
Q Consensus 59 l~~lF~~Y~d~~~d-~I~~dG~~~~~edLgv~~ed~~ 94 (177)
|-=||+.|.+++.+ ..+.+-+.+.+++.|.+.+++-
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aGF~~~eI~ 41 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAGFEDEEIN 41 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcCCCHHHHH
Confidence 45589999998544 6789999999999999998875
No 106
>PF02289 MCH: Cyclohydrolase (MCH); InterPro: IPR003209 Methenyltetrahydromethanopterin cyclohydrolase catalyses the interconversion of methenyltetrahydromethanopterin and N(5)formyltetrahydromethanopterin, and is found in both archaea and bacteria. In methanogenic archaea, such as Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133), this enzyme is involved in the production of methane from carbon dioxide []. In the sulphate-reducer Archaeoglobus fulgidus, this enzyme is involved in the tetrahydromethanopterin-dependent oxidation of lactate []. In Gram-negative methylotrophic bacteria this enzyme is involved in the tetrahydromethanopterin-dependent oxidation of formaldehyde to formate [].; GO: 0018759 methenyltetrahydromethanopterin cyclohydrolase activity, 0006730 one-carbon metabolic process; PDB: 1QLM_A.
Probab=38.07 E-value=2.2 Score=37.57 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=33.8
Q ss_pred HHHHH--HhCCCCccccchhhccccCCCCcCCHHHHHHHHHH--hcCCC--------CCccCHHHHHHH-HhHcCCCCCC
Q 030467 26 ALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDPY--------LDMILVDGITLL-CNDLQVDPQD 92 (177)
Q Consensus 26 A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~--Y~d~~--------~d~I~~dG~~~~-~edLgv~~ed 92 (177)
++.+| +..+|.|. .+.||.-.++...+-..+=+.+|++ |+|.. .|.+-.+-+..+ .++-||+|++
T Consensus 84 ~lACL~SQyAGW~l~--~~~ffamGSGPaRALa~kpe~lf~~l~Y~D~~d~aVl~lEs~~lP~~~v~~~IA~~cgv~p~~ 161 (313)
T PF02289_consen 84 VLACLGSQYAGWSLS--VGDFFAMGSGPARALARKPEELFEELGYRDDADFAVLVLESDKLPPEEVAEKIAEACGVDPEN 161 (313)
T ss_dssp HHHHTTTTS--EEEE--ETTEEEEEESTTHHHHTSSHHHHHHHT-----S-EEEEEE-SS---HHHHHHHHHHHTS-GGG
T ss_pred HHHHHhccccCcccc--cCCEeEecCcHHHHhhcCcHHHHHHcCccccCCcEEEEEEcCCCCCHHHHHHHHHHcCCCHHH
Confidence 34455 45899984 7789876554211110111556666 66642 245555555554 5899999999
Q ss_pred HHHHH
Q 030467 93 IVMLV 97 (177)
Q Consensus 93 ~~~L~ 97 (177)
+.+|+
T Consensus 162 l~llv 166 (313)
T PF02289_consen 162 LYLLV 166 (313)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 86553
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=37.74 E-value=64 Score=30.88 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCC----CCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDP----QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~----ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
-++.|..||.+|.+ .+.|+.+++.+|+.+-.-++ ++..-|+=.+ -....-+.++.++|..-+..-
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcCC
Confidence 46799999999986 36899999999998866543 2333222221 112334568999998887653
No 108
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=37.30 E-value=1.3e+02 Score=23.53 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=53.0
Q ss_pred CCCccHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHH-HHhcCCCCCccCHHHHHH
Q 030467 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELY-NRYKDPYLDMILVDGITL 81 (177)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF-~~Y~d~~~d~I~~dG~~~ 81 (177)
+.++.+.+.++.++.-.+.++......++. .-+.+++.+...-..........|..++ =-|+|..-+.-.-+=+.+
T Consensus 39 ~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---~~~~~L~~~~~~~~~~~~~~~~ll~~~l~vA~ADG~l~~~E~~lL~~ 115 (150)
T cd07311 39 VISPEERDWAIGYAAARGGDADMVEELKEY---TADEDLEEVDFRSPNIKSSRRALLYDAIQVCAADGELSPGEVAAVRK 115 (150)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---CccccHHHHHHHHHhcchhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356777788888887778888877777777 3445555553221110111122222222 125554334455566788
Q ss_pred HHhHcCCCCCCHHHH
Q 030467 82 LCNDLQVDPQDIVML 96 (177)
Q Consensus 82 ~~edLgv~~ed~~~L 96 (177)
.|.-|||++.+..-|
T Consensus 116 iA~~LGis~~~~~~l 130 (150)
T cd07311 116 AASLLGISEDEVQKL 130 (150)
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999998765543
No 109
>PLN02228 Phosphoinositide phospholipase C
Probab=37.22 E-value=1.2e+02 Score=29.08 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCC-CCH-HHHHHHHhhCcc----ccccccHHHHHhhhhh
Q 030467 53 LTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDP-QDI-VMLVVSWHMKAA----TMCEFSKQEFIGGLQS 121 (177)
Q Consensus 53 ~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~-ed~-~~L~la~~l~a~----~~g~~tr~eF~~g~~~ 121 (177)
...++.|..||.+|... +.|+.+++.+|+.+..=+. .+. .+.-|-..++.. .-|.+|.++|..-+..
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 44689999999999864 5899999999998775433 221 123333344322 3467999999887754
No 110
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=37.13 E-value=1.3e+02 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=27.7
Q ss_pred cHHHHHhhhhhcCCCcHHHHHHHHHHHHHHc
Q 030467 111 SKQEFIGGLQSLGIDSLDKFRERISFMRAEL 141 (177)
Q Consensus 111 tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l 141 (177)
.|.+|+.++.+-|+.|+++++.-+...|.+-
T Consensus 66 aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~~ 96 (233)
T PF06992_consen 66 AKRQWIKAFAENGITTMEQVRAGMRRARASE 96 (233)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Confidence 4899999999999999999999998888775
No 111
>PLN02964 phosphatidylserine decarboxylase
Probab=36.86 E-value=1.3e+02 Score=29.22 Aligned_cols=64 Identities=5% Similarity=-0.212 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhc
Q 030467 59 LEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 59 l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l 122 (177)
+.++|..+-.+.++.|+.+-...++..+|-.+.+-.+.-+-..+....-|.||.+||.+.|...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 7889998843334699999999999999854433334444455666678999999999998883
No 112
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=36.38 E-value=94 Score=27.39 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCC----ccCHHHHHHHHhHcCCC-----C----
Q 030467 24 KAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLD----MILVDGITLLCNDLQVD-----P---- 90 (177)
Q Consensus 24 ~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d----~I~~dG~~~~~edLgv~-----~---- 90 (177)
..|.+.|++.+.++...-.-+ ..-..-+++...+++.|=+=+.|++.+ .||-.|..+++.+|..+ |
T Consensus 29 ~~a~~~L~~~G~~v~~~~~i~-~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 29 KRAIQRLENLGFEVVFGEHIL-RRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred HHHHHHHHHcCCEEEechhhh-hccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhhhhcchHHHhcCCceEE
Confidence 568999999997654332222 111222444577888888888887654 79999999999999984 3
Q ss_pred --CCHHHHHHHHhhCc
Q 030467 91 --QDIVMLVVSWHMKA 104 (177)
Q Consensus 91 --ed~~~L~la~~l~a 104 (177)
+|+..|.+|-.-+.
T Consensus 108 GySDiTall~ai~~k~ 123 (313)
T COG1619 108 GYSDITALLLAILAKT 123 (313)
T ss_pred EecHHHHHHHHHHHhc
Confidence 78888877776554
No 113
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=36.31 E-value=69 Score=25.98 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=32.5
Q ss_pred CCccHHHHHHHHHHhhCCCHHHHHHHHHhCCC-Cccccch
Q 030467 4 LSRSNRDKLQQFVSITGASEKAALQALKASDW-HLEGAFD 42 (177)
Q Consensus 4 l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w-~le~A~~ 42 (177)
++..+++....++++.|.-++.|..+|...+. ++..||.
T Consensus 63 ~~~~Er~lF~~L~~V~GIGpK~Al~iL~~~~~~el~~aI~ 102 (191)
T TIGR00084 63 NTLEERELFKELIKVNGVGPKLALAILSNMSPEEFVYAIE 102 (191)
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 57788899999999999999999999987665 5666665
No 114
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=34.81 E-value=41 Score=26.20 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=48.0
Q ss_pred cCCCCCCHHHHHHHHhhCccccc-cccHHHHHh-hhhhcCCCcHHHHHHHHHHHHHHccChhH----HHHHHHHHhhh
Q 030467 86 LQVDPQDIVMLVVSWHMKAATMC-EFSKQEFIG-GLQSLGIDSLDKFRERISFMRAELKDEQK----FREIYNFAFAW 157 (177)
Q Consensus 86 Lgv~~ed~~~L~la~~l~a~~~g-~~tr~eF~~-g~~~l~~dsl~~lk~~l~~l~~~l~~~~~----Fk~iY~ftF~f 157 (177)
--|..+-...-||..+++ ..| .++|+++++ -|..-.+..- .|-..|..||..|.+..+ +..|++==|.|
T Consensus 28 ~~v~l~~~~~~lL~~L~e--~~geVvsk~eL~~~VW~~~~v~~~-~Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~ 102 (148)
T COG3710 28 EVVKLGPRELKLLSLLLE--RAGEVVSKDELLDAVWPGRIVTVN-TLTQAISALRRALRDIGDGHRLIATVPRRGYKF 102 (148)
T ss_pred eEEEecHHHHHHHHHHHh--ccCceecHHHHHHHhCCCceEccC-hHHHHHHHHHHHHhccCCcceEEEEeCCcceEE
Confidence 344556667788888888 445 899999999 5888654332 299999999999976542 55555544444
No 115
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=34.68 E-value=41 Score=20.98 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVM 95 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~ 95 (177)
...|++.|+. + ..++.+-+..++..|||++..|..
T Consensus 12 ~~~L~~~f~~--~---~~p~~~~~~~la~~l~l~~~~V~~ 46 (57)
T PF00046_consen 12 LKVLEEYFQE--N---PYPSKEEREELAKELGLTERQVKN 46 (57)
T ss_dssp HHHHHHHHHH--S---SSCHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHH--h---cccccccccccccccccccccccc
Confidence 3556666665 2 246678889999999999876654
No 116
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=34.64 E-value=72 Score=27.15 Aligned_cols=76 Identities=20% Similarity=0.153 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCC----ccCHHHHHHHHhHcCCCC---------
Q 030467 24 KAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLD----MILVDGITLLCNDLQVDP--------- 90 (177)
Q Consensus 24 ~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d----~I~~dG~~~~~edLgv~~--------- 90 (177)
..|++.|++.++++...=+.+-... .-+..+..+.++|=+=++||+-+ .+|-+|..++++.|..+.
T Consensus 17 ~~~~~~L~~~G~~v~~~~~~~~~~~-~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 17 ERAIARLESLGLEVVVGPHVLARDG-YLAGTDEERAADLNAAFADPEIKAIWCARGGYGANRLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred HHHHHHHHhCCCEEEeccchhhhcC-ccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHHhhhhCCHHHHhhCCeEEE
Confidence 5689999998887765554443222 12455778888888888898655 789999999999987762
Q ss_pred --CCHHHHHHHH
Q 030467 91 --QDIVMLVVSW 100 (177)
Q Consensus 91 --ed~~~L~la~ 100 (177)
+|+..|-++-
T Consensus 96 GySDiTaL~~~l 107 (282)
T cd07025 96 GYSDITALHLAL 107 (282)
T ss_pred EecHHHHHHHHH
Confidence 6777777654
No 117
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=34.46 E-value=63 Score=23.57 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=44.1
Q ss_pred HHHHHhHcC-CCC-CCHHHHHHHHhhCccccccccHHHHHhhhhhc-----CCCcHHHHHHHHHHHHHHccChhHH
Q 030467 79 ITLLCNDLQ-VDP-QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL-----GIDSLDKFRERISFMRAELKDEQKF 147 (177)
Q Consensus 79 ~~~~~edLg-v~~-ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l-----~~dsl~~lk~~l~~l~~~l~~~~~F 147 (177)
+++|-.+.+ .+. +.|..||++-. -|.++-|||..-++.. +-.=++=||+.||-||+++.+...|
T Consensus 12 Li~ls~~~~qpe~~~~Vr~LV~~L~-----~~~i~~EeF~~~Lq~~lns~~qP~lvPFLK~slp~Lr~~l~~~~~~ 82 (92)
T smart00549 12 LIQLSNDISQPEVAERVRTLVLGLV-----NGTITAEEFTSRLQEALNSPLQPYLIPFLKNSLPLLRRELLHCARL 82 (92)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHcCCCCchhHHHHHHhhHHHHHHHHHHHHH
Confidence 455555555 333 45677776543 3578999999998873 3345888999999999998765443
No 118
>PF04957 RMF: Ribosome modulation factor; InterPro: IPR007040 This entry contains ribosome modulation factors (RMF). They associate with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia colicells [, ]. It has been proposed that RMF mediates the formation of a 'storage ribosome', the 100S particle, in stationary phase by inactivating excess ribosomes to protect them from degradation and to maintain the required balance between the concentrations of ribosomes and protein synthesis factors in order to maintain translational elongation efficiency [, ]. ; PDB: 2JRM_A 3V24_V 3V22_V.
Probab=34.01 E-value=27 Score=23.06 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=14.3
Q ss_pred CccccccccHHHHHhhhhh
Q 030467 103 KAATMCEFSKQEFIGGLQS 121 (177)
Q Consensus 103 ~a~~~g~~tr~eF~~g~~~ 121 (177)
-||-...-.|+.|+.||.+
T Consensus 28 ~CPy~~~~~r~~Wl~GWre 46 (55)
T PF04957_consen 28 LCPYQDGDARSQWLGGWRE 46 (55)
T ss_dssp C--SSSCHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHH
Confidence 3677777789999999986
No 119
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=33.90 E-value=63 Score=19.98 Aligned_cols=28 Identities=11% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCC--CCCccCHHHHHHHHh
Q 030467 57 RHLEELYNRYKDP--YLDMILVDGITLLCN 84 (177)
Q Consensus 57 ~~l~~lF~~Y~d~--~~d~I~~dG~~~~~e 84 (177)
..|..+|.+|+.. +.+.+.-..+-++++
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 4578899999844 446888888887774
No 120
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=33.55 E-value=40 Score=25.28 Aligned_cols=13 Identities=15% Similarity=0.744 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcC
Q 030467 56 TRHLEELYNRYKD 68 (177)
Q Consensus 56 ~~~l~~lF~~Y~d 68 (177)
..++.+||+-|.+
T Consensus 11 q~e~~~if~~yq~ 23 (108)
T PF08855_consen 11 QDELQDIFEDYQE 23 (108)
T ss_pred HHHHHHHHHHHHH
Confidence 4678888888873
No 121
>COG5503 Uncharacterized conserved small protein [Function unknown]
Probab=33.11 E-value=32 Score=23.71 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.5
Q ss_pred CHHHHHHHHHhCCCCccc
Q 030467 22 SEKAALQALKASDWHLEG 39 (177)
Q Consensus 22 s~~~A~~~L~~~~w~le~ 39 (177)
++..|+++|+.+++|+|-
T Consensus 29 se~~vR~ll~e~~yniEF 46 (69)
T COG5503 29 SETKVRQLLKENNYNIEF 46 (69)
T ss_pred hHHHHHHHHhccCcceEE
Confidence 577799999999999863
No 122
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.02 E-value=52 Score=26.42 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchh
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDV 43 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ 43 (177)
+..|..+.|.++..|..+.-.++|..+.|...
T Consensus 135 ~~D~A~FlGl~~ddAtk~ilEnGWqaDaasqM 166 (197)
T KOG4414|consen 135 ADDFAAFLGLPEDDATKGILENGWQADAASQM 166 (197)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcccchhhHHHH
Confidence 47899999999999999999999998876543
No 123
>PRK03980 flap endonuclease-1; Provisional
Probab=32.53 E-value=65 Score=27.90 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHHHHHHHhhCC---------CHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCC--------C
Q 030467 10 DKLQQFVSITGA---------SEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYL--------D 72 (177)
Q Consensus 10 ~~i~~F~~~T~~---------s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~--------d 72 (177)
+.+-.|+-+.|+ -++.|.+++++++ ++|..++..-. ...+-..+.++| .+|.- .
T Consensus 177 ~q~id~~iL~G~Dy~~GI~GIG~ktA~kLi~~~~-sle~i~~~~~~-----~~~~~~~~r~~f---~~p~v~~~~~~~~~ 247 (292)
T PRK03980 177 EQLIDIAILVGTDYNPGIKGIGPKTALKLIKKHG-DLEKVLEERGF-----EIENYDEIREFF---LNPPVTDDYELKWK 247 (292)
T ss_pred HHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHCC-CHHHHHHhccC-----CCCCHHHHHHHh---cCCCCCCCCCccCC
Confidence 345667777765 4899999999999 77777663311 111224444444 44421 2
Q ss_pred ccCHHHHHHHH-hHcCCCCCCHH
Q 030467 73 MILVDGITLLC-NDLQVDPQDIV 94 (177)
Q Consensus 73 ~I~~dG~~~~~-edLgv~~ed~~ 94 (177)
.++.||+.+|+ +..|++++-|.
T Consensus 248 ~pd~~~l~~fl~~e~~f~~~rv~ 270 (292)
T PRK03980 248 EPDKEGIIEFLVEEHDFSEERVK 270 (292)
T ss_pred CCCHHHHHHHHhccCCCCHHHHH
Confidence 68899999977 79999987544
No 124
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=32.00 E-value=35 Score=22.91 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=31.2
Q ss_pred HhHcCCCCCCHHHHHHHHhhCccccc---cccHHHHHhhhhhcCCCcHHHHHHHHH
Q 030467 83 CNDLQVDPQDIVMLVVSWHMKAATMC---EFSKQEFIGGLQSLGIDSLDKFRERIS 135 (177)
Q Consensus 83 ~edLgv~~ed~~~L~la~~l~a~~~g---~~tr~eF~~g~~~l~~dsl~~lk~~l~ 135 (177)
+++||++ +..+-..-..|..+.| .++++++. .++.+|-.|++.++..|.
T Consensus 14 I~~L~LS---~Ra~n~L~~~~I~tv~dL~~~s~~~L~-~i~n~G~ksl~EI~~~L~ 65 (66)
T PF03118_consen 14 IEDLGLS---VRAYNCLKRAGIHTVGDLVKYSEEDLL-KIKNFGKKSLEEIKEKLK 65 (66)
T ss_dssp GGGSTSB---HHHHHHHHCTT--BHHHHHCS-HHHHH-TSTTSHHHHHHHHHHHHH
T ss_pred HHHhCCC---HHHHHHHHHhCCcCHHHHHhCCHHHHH-hCCCCCHhHHHHHHHHHc
Confidence 5677776 5566555666777766 46666654 567777778888777764
No 125
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.30 E-value=41 Score=18.37 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHcc
Q 030467 126 SLDKFRERISFMRAELK 142 (177)
Q Consensus 126 sl~~lk~~l~~l~~~l~ 142 (177)
.++.+|..|.+|+.+|.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36789999999999885
No 126
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=30.99 E-value=25 Score=24.56 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=23.1
Q ss_pred CCccCHHHHHHHHhHcCCCCCCHHHHH
Q 030467 71 LDMILVDGITLLCNDLQVDPQDIVMLV 97 (177)
Q Consensus 71 ~d~I~~dG~~~~~edLgv~~ed~~~L~ 97 (177)
.+.|..+-+.++|..|+..|.|+..++
T Consensus 40 ~k~I~~~tL~~iC~~LeCqpgDiley~ 66 (73)
T COG3655 40 VKAIRLSTLEKICKALECQPGDILEYV 66 (73)
T ss_pred cceeeHHHHHHHHHHcCCChhheeEEe
Confidence 357999999999999999999986543
No 127
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=30.65 E-value=33 Score=23.57 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=14.2
Q ss_pred cccccHHHHHhhhhhc
Q 030467 107 MCEFSKQEFIGGLQSL 122 (177)
Q Consensus 107 ~g~~tr~eF~~g~~~l 122 (177)
-+.|||++|+.-++.+
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 6789999999999885
No 128
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=30.60 E-value=2.4e+02 Score=21.40 Aligned_cols=127 Identities=10% Similarity=0.068 Sum_probs=73.2
Q ss_pred HHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCc
Q 030467 25 AALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKA 104 (177)
Q Consensus 25 ~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a 104 (177)
.+..||++++.+.+. -|..+. +...+.++-+++.......+ ..-..+|.++..+...|+-.=
T Consensus 9 ~~~~~l~~~g~~~eg----iFR~~g-----~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~va~~lK~~Lr~L 70 (174)
T smart00324 9 KCIEYLEKRGLDTEG----IYRVSG-----SKSRVKELREAFDSGPDPDL---------DLSEYDVHDVAGLLKLFLREL 70 (174)
T ss_pred HHHHHHHHcCCCccc----eeecCC-----cHHHHHHHHHHHhCCCCCCc---------ccccCCHHHHHHHHHHHHHhC
Confidence 467888888776643 344432 34556666666543211001 223445555666655555544
Q ss_pred cccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccChhH--HHHHHHHHhhhhhccCCcccChHh
Q 030467 105 ATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQK--FREIYNFAFAWAKEKVIVFLFLRI 170 (177)
Q Consensus 105 ~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~--Fk~iY~ftF~f~~~~gqk~L~le~ 170 (177)
|. +-|+.+.|-.=....++.+.+.....+..+-..|..... ++.+..|....+.......|+.+.
T Consensus 71 p~-pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~n 137 (174)
T smart00324 71 PE-PLIPYELYEEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARN 137 (174)
T ss_pred CC-ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHH
Confidence 42 245554443333334456666666677777777866543 899999999888776666666553
No 129
>PRK14563 ribosome modulation factor; Provisional
Probab=30.59 E-value=36 Score=22.53 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=15.7
Q ss_pred CccccccccHHHHHhhhhhc
Q 030467 103 KAATMCEFSKQEFIGGLQSL 122 (177)
Q Consensus 103 ~a~~~g~~tr~eF~~g~~~l 122 (177)
-||-...-.|+.|+.||.+=
T Consensus 28 ~CPy~~~~~r~~Wl~GWReg 47 (55)
T PRK14563 28 MCPYQTLDARSQWLGGWREA 47 (55)
T ss_pred cCCCCCcHHHHHHHHHHHHH
Confidence 36666667899999999874
No 130
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=30.49 E-value=53 Score=27.81 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHHHHHHHhHcCCC-CCCHHHHHHHHhhCc
Q 030467 76 VDGITLLCNDLQVD-PQDIVMLVVSWHMKA 104 (177)
Q Consensus 76 ~dG~~~~~edLgv~-~ed~~~L~la~~l~a 104 (177)
+++..+||.|||.. ...-..-+|-|+++-
T Consensus 57 ~~~~~kYl~dl~cP~~~~~~~~~ldWLL~~ 86 (249)
T PF10036_consen 57 PKAFEKYLKDLGCPFSSESRQEQLDWLLGL 86 (249)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Confidence 68999999999999 467778888888864
No 131
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=29.57 E-value=87 Score=20.33 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHHhhCccccccccHHHHHhh-hhhcCCCcHHHHHHHHHHHHHHccC
Q 030467 94 VMLVVSWHMKAATMCEFSKQEFIGG-LQSLGIDSLDKFRERISFMRAELKD 143 (177)
Q Consensus 94 ~~L~la~~l~a~~~g~~tr~eF~~g-~~~l~~dsl~~lk~~l~~l~~~l~~ 143 (177)
..-+|..++..+.- .+||++..+. |..-.-.+-..+..+|..||+.|.+
T Consensus 10 e~~lL~~L~~~~~~-~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 10 EFRLLELLLRNPGR-VVSREELIEALWGDEEDVSDNSLDVHISRLRKKLED 59 (77)
T ss_dssp HHHHHHHHHHTTTS-EEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCC-CCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhh
Confidence 34455566655432 8999999986 4443336788899999999999865
No 132
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=29.06 E-value=67 Score=24.65 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCC
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD 92 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed 92 (177)
..+-+.+||..|-..+.|.-+.+-+.+.++++|++++.
T Consensus 102 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~ 139 (192)
T cd03022 102 AEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADE 139 (192)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 45667788888765444555667789999999998753
No 133
>PF11527 ARL2_Bind_BART: The ARF-like 2 binding protein BART; InterPro: IPR023379 This domain is found in ADP-ribosylation factor-like 2 (ARF2) binding protein, also known as BART, and in uncharacterised proteins. BART binds specifically to ARF2.GTP with a high affinity. However, it does not bind to ARF2.GDP. It is thought that this specific interaction is due to BART being the first identified ARF2-specific effector. The function is not completely characterised []. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1 []. ; PDB: 2K0S_A 2K9A_A 3DOF_B 3DOE_B.
Probab=28.98 E-value=36 Score=25.31 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHH
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLV 97 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~ 97 (177)
++-.-..+|++|++= =-.=+..|+.++|++++.....|
T Consensus 42 nkley~~i~~ey~~l-----vE~~le~~l~~~g~s~e~f~~~~ 79 (121)
T PF11527_consen 42 NKLEYTEIHQEYKEL-----VEKLLEEFLEELGISMEEFEEAC 79 (121)
T ss_dssp CSTTHHHHHHHHHHH-----HHHHHHHHHHSTTSSHHCHHHHH
T ss_pred ccHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHH
Confidence 445567899999862 12446678889999999988888
No 134
>COG5642 Uncharacterized conserved protein [Function unknown]
Probab=28.91 E-value=1.1e+02 Score=23.90 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCCccHHHHHHHHHHhhCC------CHHHHHHHHHhC
Q 030467 3 KLSRSNRDKLQQFVSITGA------SEKAALQALKAS 33 (177)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~------s~~~A~~~L~~~ 33 (177)
+||++|...|..|..+-+. +++.|+.+|..-
T Consensus 78 ~ls~ees~R~arfarV~~~AvDvfgse~eA~~wl~rP 114 (149)
T COG5642 78 RLSPEESERIARFARVWDLAVDVFGSEEEARDWLFRP 114 (149)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHhcCHHHHHHHHhCC
Confidence 5899999999999887664 456677766553
No 135
>PLN02952 phosphoinositide phospholipase C
Probab=28.52 E-value=1.8e+02 Score=28.02 Aligned_cols=69 Identities=7% Similarity=0.012 Sum_probs=44.2
Q ss_pred CcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCC----CCCHHHHHHHHh--hC-ccc--cccccHHHHHhhhhh
Q 030467 52 SLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVD----PQDIVMLVVSWH--MK-AAT--MCEFSKQEFIGGLQS 121 (177)
Q Consensus 52 ~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~----~ed~~~L~la~~--l~-a~~--~g~~tr~eF~~g~~~ 121 (177)
....++.+..||.+|... .+.|+.+.+.+|+.+-.=+ +++..-|+-... -+ ... -+.++.++|..-+..
T Consensus 33 ~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 33 EAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 344689999999999874 3689999999999875543 333333321110 01 111 134888999988763
No 136
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.48 E-value=1e+02 Score=23.00 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=52.8
Q ss_pred CCCCCccHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcC
Q 030467 1 MHKLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKD 68 (177)
Q Consensus 1 m~~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d 68 (177)
|-.|++..+.-|-|=...-.+...+|...-+..|-++...--..|+........-.++...+|+..+.
T Consensus 1 MA~L~~~vK~FIVQ~LAcfdTPs~v~~aVk~eFgi~vsrQqve~yDPTK~aG~~Ls~k~~~lF~~TR~ 68 (104)
T PF10045_consen 1 MAALKKEVKAFIVQSLACFDTPSEVAEAVKEEFGIDVSRQQVESYDPTKRAGRDLSKKWVDLFEETRK 68 (104)
T ss_pred CCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHhCCccCHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999988888888889999999999998887665555554333233347889999998775
No 137
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.32 E-value=2.4e+02 Score=20.60 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=48.7
Q ss_pred HHHHHHHHHHh-hCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhc-----CCCCCccCHHHH-H
Q 030467 8 NRDKLQQFVSI-TGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYK-----DPYLDMILVDGI-T 80 (177)
Q Consensus 8 q~~~i~~F~~~-T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~-----d~~~d~I~~dG~-~ 80 (177)
+...+..|+.+ -.|+.+.....|++++ ... ++-.||.+... .+++|+=|-+--. ..++...|+.-+ +
T Consensus 13 ~~~~l~~llr~~N~C~~~~~e~~L~~~~-~~~-eL~~lY~~kg~----h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv 86 (108)
T PF10366_consen 13 NPSLLGPLLRLPNYCDLEEVEEVLKEHG-KYQ-ELVDLYQGKGL----HRKALELLKKLADEEDSDEEDPFLSGVKETIV 86 (108)
T ss_pred CHHHHHHHHccCCcCCHHHHHHHHHHcC-CHH-HHHHHHHccCc----cHHHHHHHHHHhcccccccccccccCchhHHH
Confidence 45678888888 4568888999999888 554 44455544322 4555554443333 112335566656 9
Q ss_pred HHHhHcCCCCCC
Q 030467 81 LLCNDLQVDPQD 92 (177)
Q Consensus 81 ~~~edLgv~~ed 92 (177)
+|+..||-+--|
T Consensus 87 ~yL~~L~~~~~d 98 (108)
T PF10366_consen 87 QYLQKLGNEDLD 98 (108)
T ss_pred HHHHhCChhhhH
Confidence 999999854433
No 138
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=27.96 E-value=3e+02 Score=21.54 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCccHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 030467 4 LSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLC 83 (177)
Q Consensus 4 l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~ 83 (177)
|++...+.+-+..+-.=++..+...-++++.|++.-+ .-..+-+.|+.+.+...+ -+|-+..=+
T Consensus 15 l~~~~~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~--------------~f~~lH~~lee~~~~~~~--~~D~iAERi 78 (162)
T PRK09448 15 VPDSEKKATIELLNQQLAQFIDLSLITKQAHWNMKGA--------------NFIAVHEMLDGFRTALED--HLDTMAERA 78 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--------------CHHHHHHHHHHHHHHHHH--HhHHHHHHH
Confidence 5555566666777777778888899999999988332 334455555555442111 146677777
Q ss_pred hHcCCCCCC-HHHHHHHHhhCccccccccHHHHHhhhhh
Q 030467 84 NDLQVDPQD-IVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (177)
Q Consensus 84 edLgv~~ed-~~~L~la~~l~a~~~g~~tr~eF~~g~~~ 121 (177)
-.||-.|.. +..+.=.-.+.-..-+.++-++-+..+.+
T Consensus 79 ~~lGg~p~~t~~e~~~~s~i~e~~~~~~~~~~~l~~l~~ 117 (162)
T PRK09448 79 VQLGGVALGTTQVVASKTPLKSYPLDIHNVQDHLKALAD 117 (162)
T ss_pred HHcCCCCCCCHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Confidence 789998854 33222222333223344565566655544
No 139
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=27.96 E-value=1.7e+02 Score=25.33 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=46.8
Q ss_pred cCHHHHHHHHhHcCCCCCCH--------HHHHHHHhhCccccccccHH--------------------HHHhhhhhcCCC
Q 030467 74 ILVDGITLLCNDLQVDPQDI--------VMLVVSWHMKAATMCEFSKQ--------------------EFIGGLQSLGID 125 (177)
Q Consensus 74 I~~dG~~~~~edLgv~~ed~--------~~L~la~~l~a~~~g~~tr~--------------------eF~~g~~~l~~d 125 (177)
.-++++..+.+.+.-.|++. .-=.+.-.|..|.+|. +|+ +|..-+...+-+
T Consensus 113 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~P~lG~-~Re~q~~~~~l~~a~~~~~~a~~ey~~~l~~~~~~ 191 (293)
T PF09712_consen 113 LPLDNWQDFFSSLSPDPEDFLEAFWKEQYRETLGRWLQMPALGP-SREHQEQLQALFDAWMEYQRASQEYQAQLSEAWMK 191 (293)
T ss_pred hHHHHHHHHHHhcccCchhhHhhhHHHHHHHHHHHHHcCCcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888777777664 2234666788898874 444 222223333345
Q ss_pred cHHHHHHHHHHHHHHccChhHHHHHHHH
Q 030467 126 SLDKFRERISFMRAELKDEQKFREIYNF 153 (177)
Q Consensus 126 sl~~lk~~l~~l~~~l~~~~~Fk~iY~f 153 (177)
+.+.+.+.+.+..++=..+..+++||..
T Consensus 192 a~~~~~~~l~~~~~~g~~~~s~re~~d~ 219 (293)
T PF09712_consen 192 AFERMMEKLQERAEEGEQIKSWREFYDI 219 (293)
T ss_pred HHHHHHHHHHHhhccCCCCcCHHHHHHH
Confidence 5666666666555554555556666654
No 140
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=27.68 E-value=51 Score=24.95 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCC
Q 030467 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD 92 (177)
Q Consensus 57 ~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed 92 (177)
.-...+|..+...+.+..+.+.+.++++++|++++.
T Consensus 80 ~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~ 115 (178)
T cd03019 80 KLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKK 115 (178)
T ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHH
Confidence 345668888766555556688999999999997753
No 141
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.73 E-value=2.3e+02 Score=24.61 Aligned_cols=101 Identities=15% Similarity=0.316 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCc------HHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDS------LDK 129 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~ds------l~~ 129 (177)
+.=.+.|||+|.+-= |. .+.+.||++ +...|+..++.-..|.|+| |-.|||-| |..
T Consensus 84 ~aYVe~LFD~~Ae~F-d~-------~LVdkL~Y~----vP~~l~emI~~~~~g~F~~------~lDLGCGTGL~G~~lR~ 145 (287)
T COG4976 84 SAYVETLFDQYAERF-DH-------ILVDKLGYS----VPELLAEMIGKADLGPFRR------MLDLGCGTGLTGEALRD 145 (287)
T ss_pred hHHHHHHHHHHHHHH-HH-------HHHHHhcCc----cHHHHHHHHHhccCCccce------eeecccCcCcccHhHHH
Confidence 466899999998731 22 366788887 4577899999888888765 78899976 333
Q ss_pred HHHHHHH--HHHHccChhHHHHHHHHHhh-----hhhccCCcccChHhHHhh
Q 030467 130 FRERISF--MRAELKDEQKFREIYNFAFA-----WAKEKVIVFLFLRISTCK 174 (177)
Q Consensus 130 lk~~l~~--l~~~l~~~~~Fk~iY~ftF~-----f~~~~gqk~L~le~A~~~ 174 (177)
|-..|.. +-..+-....=|.+|.--|. |..+..|..-++=+|..-
T Consensus 146 ~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 146 MADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred HHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 3333321 11122122223444544432 565566666666555543
No 142
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.55 E-value=2.7e+02 Score=20.58 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=38.3
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCC
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~e 91 (177)
|.+|...+|+|..+-+.| ++-| =+..+. ..+.+...-+... |.-=.+++.+.++|++++
T Consensus 2 I~e~a~~~gvs~~tlR~Y-e~~G-Ll~~~~----r~~~g~R~Y~~~~---------------l~~l~~I~~l~~~G~sl~ 60 (124)
T TIGR02051 2 IGELAKAAGVNVETIRYY-ERKG-LLPEPD----RPEGGYRRYPEET---------------VKRLRFIKRAQELGFSLE 60 (124)
T ss_pred HHHHHHHHCcCHHHHHHH-HHCC-CCCCCc----cCCCCCEeECHHH---------------HHHHHHHHHHHHCCCCHH
Confidence 789999999999988777 4444 121110 0111100001222 222367788899999999
Q ss_pred CHHHHH
Q 030467 92 DIVMLV 97 (177)
Q Consensus 92 d~~~L~ 97 (177)
++.-+.
T Consensus 61 eI~~~l 66 (124)
T TIGR02051 61 EIGGLL 66 (124)
T ss_pred HHHHHH
Confidence 888765
No 143
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=26.37 E-value=64 Score=24.16 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=24.8
Q ss_pred ccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCc-cccccccHHHHHhhhhhcCCCcHHHHHHHH
Q 030467 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHMKA-ATMCEFSKQEFIGGLQSLGIDSLDKFRERI 134 (177)
Q Consensus 73 ~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a-~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l 134 (177)
.|.-.=+.+..+++||.++|-.+=-.-....+ ..-|.|+++.|.+-++..|.+ .+.+++.|
T Consensus 83 lI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~l 144 (154)
T PF13624_consen 83 LIDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEEL 144 (154)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhh
Confidence 35555566778999999877555433333221 123889999999999998874 45555554
No 144
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=26.02 E-value=91 Score=25.94 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=33.7
Q ss_pred cchhhcc-ccCCCCcCCHHHHHHHHHHhcCCCCCcc-CHHHHHHHHhHcCCCCCCH
Q 030467 40 AFDVFYS-QPQSKSLTDTRHLEELYNRYKDPYLDMI-LVDGITLLCNDLQVDPQDI 93 (177)
Q Consensus 40 A~~~ff~-~~~~~~~~~~~~l~~lF~~Y~d~~~d~I-~~dG~~~~~edLgv~~ed~ 93 (177)
++|+|.. .++.-....+.++++-|.+-.-.++.++ +.+++.+||.+-=-+-.+.
T Consensus 66 ~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~~s~f 121 (205)
T PF12238_consen 66 HMNAFLNDWPPHMLEEGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDSESPF 121 (205)
T ss_pred HHHHHHccCchhhhhccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhccccHH
Confidence 4555555 2222233467888888887443334466 9999999999874444433
No 145
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=25.97 E-value=71 Score=24.26 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcC
Q 030467 25 AALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKD 68 (177)
Q Consensus 25 ~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d 68 (177)
-|..+|...+-.+..|++.||.++.. +...-+++.+++.+|.+
T Consensus 26 ~a~~~~~~i~~pl~~a~~EF~~~~~~-~~ev~~~l~~i~~~~~~ 68 (131)
T PF08360_consen 26 MAEHMLDDIQTPLSKAGEEFYSNQSK-NPEVLEKLNEIRRKYLE 68 (131)
T ss_dssp HHHHHHHSSSGGGHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHcccC-CHHHHHHHHHHHHHHHH
Confidence 37778888888899999999988644 23344666667777643
No 146
>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=25.94 E-value=1.2e+02 Score=22.10 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=32.7
Q ss_pred hcCCCCC-ccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCcc
Q 030467 66 YKDPYLD-MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAA 105 (177)
Q Consensus 66 Y~d~~~d-~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~ 105 (177)
|+.+... .+..+...+.|+++|-.+..+.-|-.||+.|=.
T Consensus 5 ~~~~~grY~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld 45 (95)
T cd03518 5 YQPRLGRYNLNFHEAQQACEEQDATLASFEQLYQAWTEGLD 45 (95)
T ss_pred eeCCCCccccCHHHHHHHHHHcCCeeCCHHHHHHHHHcCcc
Confidence 4444332 678899999999999999999999999997754
No 147
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=25.78 E-value=1.4e+02 Score=20.13 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCC-CcHHHHHHHHHHHHHHccC
Q 030467 88 VDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGI-DSLDKFRERISFMRAELKD 143 (177)
Q Consensus 88 v~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~-dsl~~lk~~l~~l~~~l~~ 143 (177)
|.+..-...+|+.++..+.. .+||++..+-+-.-.- .+-..++.+|..||+.|..
T Consensus 22 v~Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~~ 77 (95)
T cd00383 22 VELTPKEFELLELLARNPGR-VLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLED 77 (95)
T ss_pred EEeCHHHHHHHHHHHhCCCC-cCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 44455556677777776543 8999999986433222 3556788999999999864
No 148
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=25.52 E-value=2.5e+02 Score=19.81 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCcc--ccccccHHHHHhhhhh-cC--CCcHHHHHHHHHHHHHHcc----ChhHHHHHHHHHhhhhhc
Q 030467 93 IVMLVVSWHMKAA--TMCEFSKQEFIGGLQS-LG--IDSLDKFRERISFMRAELK----DEQKFREIYNFAFAWAKE 160 (177)
Q Consensus 93 ~~~L~la~~l~a~--~~g~~tr~eF~~g~~~-l~--~dsl~~lk~~l~~l~~~l~----~~~~Fk~iY~ftF~f~~~ 160 (177)
+..|+-+...=+. .-|.|+++|+..-++. +| +... ..+..+-+.+. ..-.|.+|-+.....+..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~----~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDV----EGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCH----HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4556666655555 6789999999999999 76 2222 34455555553 222488888777666553
No 149
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=25.28 E-value=1.5e+02 Score=25.63 Aligned_cols=62 Identities=11% Similarity=0.326 Sum_probs=42.5
Q ss_pred HHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccChhHHHHHH
Q 030467 76 VDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIY 151 (177)
Q Consensus 76 ~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~iY 151 (177)
++-+...++++|++ +.-+.|||.+.-|... .-=.|..++++|+..|..+.-.|.+.. ++.+-
T Consensus 244 ~~~l~~~a~~~g~t---~aq~ALawvl~~~~v~----------~~I~Ga~~~~qL~en~~A~~~~L~~~~-~~~l~ 305 (316)
T COG0667 244 LRALEELAKELGAT---PAQVALAWVLAQPGVT----------SPIVGASKAEQLEENLAALDIKLSEEE-LAALD 305 (316)
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHhCCCCc----------eEeecCCCHHHHHHHHHHhcCCCCHHH-HHHHH
Confidence 45567777889998 6689999999887641 111467788888888877777754433 44443
No 150
>PHA00680 hypothetical protein
Probab=25.27 E-value=2.3e+02 Score=21.25 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=46.3
Q ss_pred HHHhHcCC-CCCCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHH---HHHHHccChhH-HHHHHHH
Q 030467 81 LLCNDLQV-DPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERIS---FMRAELKDEQK-FREIYNF 153 (177)
Q Consensus 81 ~~~edLgv-~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~---~l~~~l~~~~~-Fk~iY~f 153 (177)
-+|+-|.- +..|+..=.||.++.+--+|.-.-.-.++.+..-..|..+.||..|. .+|.-+.|..+ |.++-..
T Consensus 59 vlcetldtldahdiepgalaqlcdamligpantaallnalaaadldapeslkaeldlakqfralvedagdvfsrlsel 136 (143)
T PHA00680 59 VLCETLDTLDAHDIEPGALAQLCDAMLIGPANTAALLNALAAADLDAPESLKAELDLAKQFRALVEDAGDVFSRLSEL 136 (143)
T ss_pred HHHHhhccchhhcCCchHHHHHhHHHhcCcccHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Confidence 35665543 44556566666666666666666677788888888899999998763 33333444444 6555443
No 151
>COG2414 Aldehyde:ferredoxin oxidoreductase [Energy production and conversion]
Probab=25.24 E-value=87 Score=30.23 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=33.1
Q ss_pred ccCHHHH---HHHHhHcCCCCCCHHHHHHHHhhCccccccccHHHHH
Q 030467 73 MILVDGI---TLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFI 116 (177)
Q Consensus 73 ~I~~dG~---~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~ 116 (177)
.++.+.+ ..+|.+||+|.=+. =-+|||.+.+...|.|+.++.-
T Consensus 328 ~~dl~~v~~~~~~~d~lG~D~Is~-G~~~a~~~El~erG~i~~~e~g 373 (614)
T COG2414 328 IIDLDAVLELNHLADRLGLDTISS-GGVLAWAMELVERGLIKEEEVG 373 (614)
T ss_pred cccHHHHHHHHHHHHHhCCCeehh-hHHHHHHHHHHHcCCCChHhcc
Confidence 5666665 46789999986321 1389999999999999999864
No 152
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=24.54 E-value=3e+02 Score=24.28 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCH-----------HHHHHHHhhCcc--c--------------ccc
Q 030467 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDI-----------VMLVVSWHMKAA--T--------------MCE 109 (177)
Q Consensus 57 ~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~-----------~~L~la~~l~a~--~--------------~g~ 109 (177)
..|.=+|+.+.+..++....-.+.+-.+.||+..-|| .+++|+..+|.. + .+.
T Consensus 178 GTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDPRDDLnGmDVARKvtIl~Ri~Gv~ves~~Sfpv~SLiPepl~s~ 257 (364)
T KOG0455|consen 178 GTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTILARILGVRVESMDSFPVESLIPEPLPSL 257 (364)
T ss_pred ccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCCcccccccchhhhhhhhhhhhccceeecccccchhhcCCcccccc
Confidence 4466688888877677788888999999999954333 477888888753 2 345
Q ss_pred ccHHHHHhhhhhcCCCcHHHHHHHH
Q 030467 110 FSKQEFIGGLQSLGIDSLDKFRERI 134 (177)
Q Consensus 110 ~tr~eF~~g~~~l~~dsl~~lk~~l 134 (177)
.+-+||+.|+.++. ..++++++.-
T Consensus 258 ~sadeFL~gl~~~D-~~~~~~~keA 281 (364)
T KOG0455|consen 258 MSADEFLHGLVKLD-QNIEERVKEA 281 (364)
T ss_pred ccHHHHHhhhhhhh-hhHHHHHHHh
Confidence 67889999887753 2355555443
No 153
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.47 E-value=79 Score=21.12 Aligned_cols=25 Identities=12% Similarity=0.440 Sum_probs=11.4
Q ss_pred CCCCCccHHHH---HHHHHHhhCCCHHH
Q 030467 1 MHKLSRSNRDK---LQQFVSITGASEKA 25 (177)
Q Consensus 1 m~~l~~~q~~~---i~~F~~~T~~s~~~ 25 (177)
|..|++-|++. |.+|+.-+|.++.+
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~~G~~Pt~ 28 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEENGYPPTV 28 (65)
T ss_dssp -----HHHHHHHHHHHHHHHHHSS---H
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCH
Confidence 77888888765 45666667766543
No 154
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=24.27 E-value=99 Score=14.81 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=7.4
Q ss_pred cccccHHHHHhhhh
Q 030467 107 MCEFSKQEFIGGLQ 120 (177)
Q Consensus 107 ~g~~tr~eF~~g~~ 120 (177)
-|.++.++|...++
T Consensus 14 ~g~i~~~e~~~~~~ 27 (29)
T smart00054 14 DGKIDFEEFKDLLK 27 (29)
T ss_pred CCcEeHHHHHHHHH
Confidence 44555555555544
No 155
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.16 E-value=67 Score=22.41 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=52.4
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCC
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~e 91 (177)
|.++..++|+|+.+-+.|-+ .|+ +.. . ..+.+ . -.|.+ .|.--+.-+..+..|+|++++
T Consensus 4 i~e~A~~~gvs~~tLr~ye~-~Gl-i~p----~-r~~~g----~--------R~y~~--~dv~~l~~i~~L~~d~g~~l~ 62 (91)
T cd04766 4 ISVAAELSGMHPQTLRLYER-LGL-LSP----S-RTDGG----T--------RRYSE--RDIERLRRIQRLTQELGVNLA 62 (91)
T ss_pred HHHHHHHHCcCHHHHHHHHH-CCC-cCC----C-cCCCC----C--------eeECH--HHHHHHHHHHHHHHHcCCCHH
Confidence 67899999999999887755 564 211 0 01111 0 01111 133334566677778999998
Q ss_pred CHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHcc
Q 030467 92 DIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK 142 (177)
Q Consensus 92 d~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~ 142 (177)
++..+.- + .+-++.|++.|..|++.++
T Consensus 63 ~i~~~l~--------------------l----~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 63 GVKRILE--------------------L----EEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHH--------------------H----HHHHHHHHHHHHHHHHHhc
Confidence 8766553 1 2467777777877777664
No 156
>PRK03430 hypothetical protein; Validated
Probab=23.78 E-value=66 Score=25.62 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCC-ccCHHHHHHHHhHcCCCCCCHHHHHHHH
Q 030467 60 EELYNRYKDPYLD-MILVDGITLLCNDLQVDPQDIVMLVVSW 100 (177)
Q Consensus 60 ~~lF~~Y~d~~~d-~I~~dG~~~~~edLgv~~ed~~~L~la~ 100 (177)
-=||+.|...+.+ ..+.+.+.+-+.+.|.+.+++- =.|.|
T Consensus 6 ~YLFEnY~~~d~~~~pd~~~L~~~L~~aGF~~~eI~-~AL~W 46 (157)
T PRK03430 6 MYLFETYIHNEAELRVDQDKLEDDLTDAGFHREDIY-NALLW 46 (157)
T ss_pred hHHHHHhhccccccCCCHHHHHHHHHHcCCCHHHHH-HHHHH
Confidence 3489999954333 7888999999999999988763 34444
No 157
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=23.59 E-value=67 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCC-CccCHHHHHHHHhHcCCC
Q 030467 56 TRHLEELYNRYKDPYL-DMILVDGITLLCNDLQVD 89 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~-d~I~~dG~~~~~edLgv~ 89 (177)
.+...+||.+|.+|+. =.++.+++..++...|+-
T Consensus 48 n~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGly 82 (211)
T COG0177 48 NKATPALFKRYPTPEDLLNADEEELEELIKSIGLY 82 (211)
T ss_pred HHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCc
Confidence 5778889999998743 368889998888888864
No 158
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.53 E-value=79 Score=17.29 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=14.0
Q ss_pred CCccCHHHHHHHHhHcC
Q 030467 71 LDMILVDGITLLCNDLQ 87 (177)
Q Consensus 71 ~d~I~~dG~~~~~edLg 87 (177)
.+.|+.+|+..+|+-|.
T Consensus 11 ~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 11 NNKLGDEGARALAEALK 27 (28)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 35799999999998763
No 159
>PRK06771 hypothetical protein; Provisional
Probab=23.11 E-value=1.1e+02 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHH
Q 030467 8 NRDKLQQFVSITGASEKAALQALK 31 (177)
Q Consensus 8 q~~~i~~F~~~T~~s~~~A~~~L~ 31 (177)
.-++|+..++.||++-..|.+|..
T Consensus 68 ki~AIK~~Re~tG~~L~eAK~yVD 91 (93)
T PRK06771 68 TVTAVKRVREAFGFSLLEAKQYVD 91 (93)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHh
Confidence 457899999999999999999865
No 160
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=23.04 E-value=22 Score=30.68 Aligned_cols=109 Identities=20% Similarity=0.296 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCCccccchhhccccCCCCcC--CHHHHHHHHHHhc-----CCCCCccCHHHHHHHHhHcCCCC--CCH
Q 030467 23 EKAALQALKASDWHLEGAFDVFYSQPQSKSLT--DTRHLEELYNRYK-----DPYLDMILVDGITLLCNDLQVDP--QDI 93 (177)
Q Consensus 23 ~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~--~~~~l~~lF~~Y~-----d~~~d~I~~dG~~~~~edLgv~~--ed~ 93 (177)
+.+-.+.|-.-.|+. =|-.|++++.- +-.+=+.|+..|+ .|.|+.| .+=-..=++.|||+| .|+
T Consensus 40 PaTfLralGpePw~a------AYVqPSRRP~DGRYGenPNRlq~yyQfQVilKPsP~Ni-QeLYL~SL~~lGid~~~HDI 112 (298)
T COG0752 40 PATFLRALGPEPWNA------AYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNI-QELYLGSLEALGIDPLEHDI 112 (298)
T ss_pred hHHHHHhcCCCccce------eeeccCCCCCCCCCCCCchhhhhheeEEEEecCCCccH-HHHHHHHHHHcCCChhhcce
Confidence 555444444455654 24456654322 2233344555554 5666555 233334457899999 455
Q ss_pred HHHHHHHhhCccccc--cccHHHHHhhhhh-----------cCCCc--------HHHHHHHHHHHHHH
Q 030467 94 VMLVVSWHMKAATMC--EFSKQEFIGGLQS-----------LGIDS--------LDKFRERISFMRAE 140 (177)
Q Consensus 94 ~~L~la~~l~a~~~g--~~tr~eF~~g~~~-----------l~~ds--------l~~lk~~l~~l~~~ 140 (177)
+.. ---...|++| ..-.|=|++||.- +.|+. ++.|--+|+..+.-
T Consensus 113 RFV--EDnWE~PTlGawGlGWEVWldGMEvTQFTYFQQvGGiec~pV~~EITYGlERlAmYiQ~vdnV 178 (298)
T COG0752 113 RFV--EDNWENPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGLECKPVSGEITYGLERLAMYIQGVDNV 178 (298)
T ss_pred eee--ccCCCCCcccccccceeEEEcCeeeeeeehhhhhCCeeccceeeeeehhHHHHHHHHhCccce
Confidence 543 3445677777 3556667777642 23543 67777777665543
No 161
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.83 E-value=85 Score=22.95 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=40.3
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCC
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~e 91 (177)
|.+|.+.+|+|..+-+.|=+.-=. .|...... |-.|.. +.+..=-.++.+.++|++++
T Consensus 3 ige~a~~~gvs~~tLryYe~~GLi-----------~p~~~~~~--------yR~Y~~---~d~~~l~~I~~lr~~G~sl~ 60 (116)
T cd04769 3 IGELAQQTGVTIKAIRLYEEKGLL-----------PSPKRSGN--------YRVYDA---QHVECLRFIKEARQLGFTLA 60 (116)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCC-----------CCCCCCCC--------ceeeCH---HHHHHHHHHHHHHHcCCCHH
Confidence 788999999999987777655221 11110000 111211 12333345677899999999
Q ss_pred CHHHHHHHHhhC
Q 030467 92 DIVMLVVSWHMK 103 (177)
Q Consensus 92 d~~~L~la~~l~ 103 (177)
++.-+.-.+-.+
T Consensus 61 eI~~~l~~~~~~ 72 (116)
T cd04769 61 ELKAIFAGHEGR 72 (116)
T ss_pred HHHHHHhccccC
Confidence 998765444333
No 162
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=22.76 E-value=3.4e+02 Score=25.69 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=24.3
Q ss_pred CccCHHHHHHHHh----HcCCCCCCHHHHHHHHhhCccccccccHHHHHhhhh
Q 030467 72 DMILVDGITLLCN----DLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQ 120 (177)
Q Consensus 72 d~I~~dG~~~~~e----dLgv~~ed~~~L~la~~l~a~~~g~~tr~eF~~g~~ 120 (177)
..|..|-...-|+ ...+..+|-.++-||..+.-..=|.|--+||++...
T Consensus 562 G~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 562 GEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred CceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 3455544444333 333444555555555555555555555555555543
No 163
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.44 E-value=4.8e+02 Score=22.11 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=77.5
Q ss_pred CCCccHHHHHHHHHHhhCCCHHH---HHHHHHhC---CCCccccchhhccccCCCCcCCHHHH-----HHHHHH-hcCCC
Q 030467 3 KLSRSNRDKLQQFVSITGASEKA---ALQALKAS---DWHLEGAFDVFYSQPQSKSLTDTRHL-----EELYNR-YKDPY 70 (177)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~---A~~~L~~~---~w~le~A~~~ff~~~~~~~~~~~~~l-----~~lF~~-Y~d~~ 70 (177)
+.+.++.+.++.++.-.+.+++. |....+.. ..+++.-+..|-..-. ....+ +-+|.= |+|..
T Consensus 71 ~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~-----~r~~l~~~lL~~l~~vA~ADG~ 145 (267)
T PRK09430 71 RVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG-----GRFDLLRMFLEIQIQAAFADGS 145 (267)
T ss_pred CcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHhcCC
Confidence 34666777888898888888776 77777753 3334443333322111 12223 233322 55643
Q ss_pred CCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCc---cc---cc--ccc-HHHHHhhhhhcCCC---cHHHHHHHHHHHH
Q 030467 71 LDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKA---AT---MC--EFS-KQEFIGGLQSLGID---SLDKFRERISFMR 138 (177)
Q Consensus 71 ~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a---~~---~g--~~t-r~eF~~g~~~l~~d---sl~~lk~~l~~l~ 138 (177)
-+.=..+=+.+.|+-|||++.|..-+...+.-.. .. -+ ..+ +....+-..-|||+ |.+.+|+.-..|.
T Consensus 146 l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~ 225 (267)
T PRK09430 146 LHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLM 225 (267)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3444456678899999999988877766654310 00 00 111 12334444556664 7888888888887
Q ss_pred HHc
Q 030467 139 AEL 141 (177)
Q Consensus 139 ~~l 141 (177)
.+.
T Consensus 226 ~~~ 228 (267)
T PRK09430 226 SEH 228 (267)
T ss_pred HHh
Confidence 776
No 164
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.32 E-value=1.5e+02 Score=18.60 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=19.7
Q ss_pred HHHHHhhCCC-HHHHHHHHHhCCCCc
Q 030467 13 QQFVSITGAS-EKAALQALKASDWHL 37 (177)
Q Consensus 13 ~~F~~~T~~s-~~~A~~~L~~~~w~l 37 (177)
++..++||.. .+.-.+.|+++||..
T Consensus 6 ~El~elTG~k~~~~Q~~~L~~~Gi~~ 31 (47)
T PF13986_consen 6 EELQELTGYKRPSKQIRWLRRNGIPF 31 (47)
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCee
Confidence 3567789997 666788999999954
No 165
>PRK09849 putative oxidoreductase; Provisional
Probab=22.19 E-value=69 Score=31.38 Aligned_cols=31 Identities=10% Similarity=-0.090 Sum_probs=27.3
Q ss_pred HHHHhHcCCCCCCHHHHHHHHhhCccccccccH
Q 030467 80 TLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSK 112 (177)
Q Consensus 80 ~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr 112 (177)
..+|.+||+|. +.-. +|||.|.+-..|.+++
T Consensus 370 n~Lcn~lGlDt-S~G~-tIA~amEl~ekGil~~ 400 (702)
T PRK09849 370 LNLFDDYGLWC-NYGQ-LHRDFTYCYSKGVFKR 400 (702)
T ss_pred HHHHHHhCCcc-cHHH-HHHHHHHHHHCCCCCc
Confidence 48999999999 6644 8999999999999987
No 166
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.11 E-value=47 Score=31.84 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=16.5
Q ss_pred hCCCHHHHHHHHHhCCCCc
Q 030467 19 TGASEKAALQALKASDWHL 37 (177)
Q Consensus 19 T~~s~~~A~~~L~~~~w~l 37 (177)
|.-|.++|+.+|+.+||.|
T Consensus 288 TddSvevaI~flkecGakL 306 (739)
T KOG2140|consen 288 TDDSVEVAIAFLKECGAKL 306 (739)
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 5567899999999999987
No 167
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=22.10 E-value=94 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHHc-cChhHHHHHHHHH
Q 030467 125 DSLDKFRERISFMRAEL-KDEQKFREIYNFA 154 (177)
Q Consensus 125 dsl~~lk~~l~~l~~~l-~~~~~Fk~iY~ft 154 (177)
.+|-.|+..|.+|+++= -|+..|+.+|+.+
T Consensus 97 ~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~a 127 (150)
T COG2147 97 KRIRALRRELRKLRDDGKIDKHTYRKLYRMA 127 (150)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 36778899999998885 4777799999865
No 168
>PF01724 DUF29: Domain of unknown function DUF29; InterPro: IPR002636 This entry is represented by Ralstonia phage RSS1, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family.; PDB: 3FCN_A.
Probab=22.07 E-value=65 Score=24.81 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=51.1
Q ss_pred CCccCHHHHHHHHhHcCCCC----CCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHcc---C
Q 030467 71 LDMILVDGITLLCNDLQVDP----QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK---D 143 (177)
Q Consensus 71 ~d~I~~dG~~~~~edLgv~~----ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~---~ 143 (177)
-+.++.+.++.=+|+||-+. ++-...+|+++|+-.-. .+.-..+|.. ||...|..|..+-.+-. .
T Consensus 22 ~~~lD~enLiEEiE~mg~se~~~l~s~L~~ll~HLLK~~yq----~~~~~~sW~~----tI~~~R~~i~~~l~~sPSLk~ 93 (139)
T PF01724_consen 22 FDALDWENLIEEIEDMGRSEKRALESRLRVLLAHLLKWQYQ----PERRSRSWRA----TIRNQRRQIEDLLEDSPSLKN 93 (139)
T ss_dssp STT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----T-TTHHHHHH----HHHHHHHHHHHH----GGGGG
T ss_pred ChHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc----cccCCchHHH----HHHHHHHHHHHHhcccccHHH
Confidence 36799999999999999865 67778889999887666 3334455665 77777777766543332 1
Q ss_pred h--hHHHHHHHHHhhhhh
Q 030467 144 E--QKFREIYNFAFAWAK 159 (177)
Q Consensus 144 ~--~~Fk~iY~ftF~f~~ 159 (177)
- ..|.++|.-+=..+.
T Consensus 94 ~l~~~l~~~Y~~A~~~a~ 111 (139)
T PF01724_consen 94 YLEEILEEAYQDARKLAA 111 (139)
T ss_dssp G--HHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 1 126777777644443
No 169
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=22.01 E-value=4.3e+02 Score=22.28 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCCC-CCccCHHHHHHHHhHcCCCC-CCHHHHHHHHhhCccccccccHHHHHhhhhhcC--------CC
Q 030467 56 TRHLEELYNRYKDPY-LDMILVDGITLLCNDLQVDP-QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG--------ID 125 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~-~d~I~~dG~~~~~edLgv~~-ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~--------~d 125 (177)
.+.+..+|..= |.+ ...|..+-+.+-+...+-+| ..-.+-.+-.++..+..|.+--+||..=|+.++ -|
T Consensus 56 ~~~~~~~f~~v-D~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D 134 (221)
T KOG0037|consen 56 FPQLAGWFQSV-DRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYD 134 (221)
T ss_pred cHHHHHHHHhh-CccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 45777888774 433 36899999999998888888 556677788899999999999999988877652 11
Q ss_pred -------cHHHHHHHHHHHHHHcc
Q 030467 126 -------SLDKFRERISFMRAELK 142 (177)
Q Consensus 126 -------sl~~lk~~l~~l~~~l~ 142 (177)
+...||++|..+-=.|+
T Consensus 135 ~D~SG~I~~sEL~~Al~~~Gy~Ls 158 (221)
T KOG0037|consen 135 RDRSGTIDSSELRQALTQLGYRLS 158 (221)
T ss_pred cCCCCcccHHHHHHHHHHcCcCCC
Confidence 24567777766544443
No 170
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=21.82 E-value=3.5e+02 Score=20.20 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCC
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~e 91 (177)
|.++...+|+|..+-+.|=+. | =+..+.. .+.+ + -.|. ++.|.-=-.++.+.++|++++
T Consensus 4 I~e~a~~~gvs~~tlR~Ye~~-G-Ll~p~~r----~~~g----y--------R~Y~---~~~l~~l~~I~~lr~~G~sl~ 62 (131)
T TIGR02043 4 IGELAKLCGVTSDTLRFYEKN-G-LIKPAGR----TDSG----Y--------RLYT---DEDQKRLRFILKAKELGFTLD 62 (131)
T ss_pred HHHHHHHHCcCHHHHHHHHHC-C-CCCCCCc----CCCC----c--------eecC---HHHHHHHHHHHHHHHcCCCHH
Confidence 788999999999987777665 3 1211100 0000 0 0121 122333456677889999999
Q ss_pred CHHHHHHH
Q 030467 92 DIVMLVVS 99 (177)
Q Consensus 92 d~~~L~la 99 (177)
++.-+.-.
T Consensus 63 eI~~~l~~ 70 (131)
T TIGR02043 63 EIKELLSI 70 (131)
T ss_pred HHHHHHHh
Confidence 88876643
No 171
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=21.82 E-value=1.8e+02 Score=21.12 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCcc
Q 030467 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAA 105 (177)
Q Consensus 73 ~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~ 105 (177)
.+..+...+.|++.|-.+..+.-|-.||+.|=.
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~d 45 (93)
T cd03515 13 KLTYTEAKAACEAEGAHLATYSQLSAAQQLGFH 45 (93)
T ss_pred ccCHHHHHHHHHHcCCccCCHHHHHHHHHcCcc
Confidence 688899999999999999999999999997743
No 172
>cd06577 PASTA_pknB PASTA domain of bacterial serine/threonine kinase pknB-like proteins. PknB is a member of a group of related transmembrane sensor kinases present in many gram positive bacteria, which has been shown to regulate cell shape in Mycobacterium tubercolosis. PknB is a receptor-like transmembrane protein with an extracellular signal sensor domain (containing multiple PASTA domains) and an intracellular, eukaryotic serine/threonine kinase-like domain. The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.
Probab=21.71 E-value=83 Score=18.88 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred HhhCCCHHHHHHHHHhCCCCcc
Q 030467 17 SITGASEKAALQALKASDWHLE 38 (177)
Q Consensus 17 ~~T~~s~~~A~~~L~~~~w~le 38 (177)
.++|.+...|...|+..++.+.
T Consensus 4 ~~~g~~~~~a~~~l~~~g~~~~ 25 (62)
T cd06577 4 DVVGMTLDEAKAALEAAGLKVG 25 (62)
T ss_pred CcCCCCHHHHHHHHHHCCCcee
Confidence 4678999999999999999886
No 173
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=21.56 E-value=1.3e+02 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=32.4
Q ss_pred ccccccHHHHHhhhhhcCCC-----cHHHHHHHHHHHHHHcc
Q 030467 106 TMCEFSKQEFIGGLQSLGID-----SLDKFRERISFMRAELK 142 (177)
Q Consensus 106 ~~g~~tr~eF~~g~~~l~~d-----sl~~lk~~l~~l~~~l~ 142 (177)
+=|.|.+++|-.-|..+..+ |+.++++++..|++-+.
T Consensus 297 Sn~pf~~~eyQr~~r~~~~~kl~~PS~~~v~~k~~~l~d~~~ 338 (521)
T COG5296 297 SNSPFLREEYQRVWRSFKVGKLSMPSIAKVKEKYDKLVDTMG 338 (521)
T ss_pred cCCcccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhC
Confidence 45679999999999999887 99999999999988763
No 174
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=21.50 E-value=88 Score=20.74 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCC---CC-CccCH
Q 030467 56 TRHLEELYNRYKDP---YL-DMILV 76 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~---~~-d~I~~ 76 (177)
.+.++.||+||..+ ++ |.|++
T Consensus 15 k~~~e~I~~KY~~~d~~~~~DeIDL 39 (58)
T PF10384_consen 15 KSRWESIIEKYGQPDFEDQGDEIDL 39 (58)
T ss_dssp HHHHHHHHHHHCSG-TCCSSEBCTT
T ss_pred HHHHHHHHHHhcCcccCCccceeec
Confidence 46789999999975 22 57765
No 175
>PF12636 DUF3781: Protein of unknown function (DUF3781); InterPro: IPR024229 This family of functionally uncharacterised proteins is found in bacteria and archaea. These proteins are typically between 82 and 98 amino acids in length and have two conserved sequence motifs: GKNWY and ITA.
Probab=21.30 E-value=88 Score=21.84 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHHHHHHhHcCCCCCCHHHHHHHHhhCccccccccHHH
Q 030467 76 VDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQE 114 (177)
Q Consensus 76 ~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g~~tr~e 114 (177)
.-|.++.=..||++.+|++-+|-.-.+. .-..|+|.+
T Consensus 12 ~lG~~RIkrNL~l~~~dvVe~ck~~I~~--~~a~I~rkG 48 (73)
T PF12636_consen 12 ELGVVRIKRNLGLDTSDVVEWCKNKILD--PNAKITRKG 48 (73)
T ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHcC--chhhhhcCC
Confidence 4688888999999999997766555554 334566543
No 176
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=21.27 E-value=1.5e+02 Score=16.48 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.1
Q ss_pred ccCHHHHHHHHhHcCCCCCC
Q 030467 73 MILVDGITLLCNDLQVDPQD 92 (177)
Q Consensus 73 ~I~~dG~~~~~edLgv~~ed 92 (177)
.+..+-+.++|+-||++++.
T Consensus 36 ~~~~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 36 KPSLETLKKLAKALGVSLDE 55 (56)
T ss_pred CCCHHHHHHHHHHhCCChhh
Confidence 45778888999999998864
No 177
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=21.11 E-value=1e+02 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCC
Q 030467 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 55 ~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~e 91 (177)
...-+..+|..|-..+.|.-+.+.+..+++.+|++++
T Consensus 110 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~ 146 (201)
T cd03024 110 QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAA 146 (201)
T ss_pred HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHH
Confidence 4566788888865544455567789999999999875
No 178
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=21.03 E-value=2.1e+02 Score=21.72 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=42.1
Q ss_pred CCHHHHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHHHHHHHHHccChhHHHHHH
Q 030467 91 QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIY 151 (177)
Q Consensus 91 ed~~~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~iY 151 (177)
-|..-|+++-.--|..+-.+|=+.|++|++.-|++=--++ |.+| .+.||..|..+-
T Consensus 55 RdFR~LWI~RINAA~R~~GlsYS~fi~gLkkA~I~inRKv---Ladl--Ai~d~~aF~~lv 110 (118)
T COG0292 55 RDFRKLWIARINAAARENGLSYSRFINGLKKAGIEIDRKV---LADL--AINDPAAFAALV 110 (118)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHcCchhhHHH---HHHH--HhcCHHHHHHHH
Confidence 4678888988888888889999999999999887643333 2222 357888898764
No 179
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=20.94 E-value=72 Score=20.85 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=13.5
Q ss_pred cccccHHHHHhhhhhcCCC
Q 030467 107 MCEFSKQEFIGGLQSLGID 125 (177)
Q Consensus 107 ~g~~tr~eF~~g~~~l~~d 125 (177)
.-.=+|+.|+.||..-.-|
T Consensus 32 q~~~~Rs~WLgGWRea~~D 50 (55)
T COG3130 32 QTLNQRSQWLGGWREAMAD 50 (55)
T ss_pred cCchHHHHHHHHHHHHhhh
Confidence 3344799999999875433
No 180
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=20.92 E-value=2.8e+02 Score=20.65 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=44.1
Q ss_pred HHHHHHHhHcCCCCCCHH-HHHHHHhhCccccccccHHHHHhhhhhcCCCcHHHHHHH-HHHHHHHc
Q 030467 77 DGITLLCNDLQVDPQDIV-MLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRER-ISFMRAEL 141 (177)
Q Consensus 77 dG~~~~~edLgv~~ed~~-~L~la~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~-l~~l~~~l 141 (177)
.|=.++...+|+++..+. .-.+|.++..+.+| ..|..=+..-|++|+++|... -.+|.+++
T Consensus 30 ~~r~~La~~~~i~~~~l~~w~~~AdL~ri~gi~----~~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l 92 (122)
T PF14229_consen 30 LGRKALAKKLGISERNLLKWVNQADLMRIPGIG----PQYAELLEHAGVDTVEELAQRNPQNLHQKL 92 (122)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHhhhcCCCC----HHHHHHHHHhCcCcHHHHHhCCHHHHHHHH
Confidence 445558999999987654 34567777777776 467788888999999988774 35555555
No 181
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.71 E-value=3.6e+02 Score=19.99 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=39.3
Q ss_pred HHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccccCCCCcCCHHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCC
Q 030467 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~e 91 (177)
|.+|...||+|..+-+.|= +.|- +. .|.+.++ .|+.=+.+.|.-=..++.+.++|++++
T Consensus 3 I~e~a~~~gvs~~tlR~Ye-~~GL-l~--------~~~r~~~-----------gyR~Y~~~~l~~l~~I~~lr~lG~sL~ 61 (127)
T TIGR02047 3 IGELAQKTGVSVETIRFYE-KQGL-LP--------PPARTDN-----------NYRVYTVGHVERLAFIRNCRTLDMSLA 61 (127)
T ss_pred HHHHHHHHCcCHHHHHHHH-HCCC-CC--------CCCcCCC-----------CCCcCCHHHHHHHHHHHHHHHcCCCHH
Confidence 7899999999998766664 4441 11 1111000 112111223444456777899999999
Q ss_pred CHHHHHH
Q 030467 92 DIVMLVV 98 (177)
Q Consensus 92 d~~~L~l 98 (177)
++.-+.=
T Consensus 62 eI~~~l~ 68 (127)
T TIGR02047 62 EIRQLLR 68 (127)
T ss_pred HHHHHHH
Confidence 9887654
No 182
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=20.61 E-value=62 Score=24.08 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=14.6
Q ss_pred CccCHHHHHHHHhHcCCCCC
Q 030467 72 DMILVDGITLLCNDLQVDPQ 91 (177)
Q Consensus 72 d~I~~dG~~~~~edLgv~~e 91 (177)
|+-...||.+|+.+|||...
T Consensus 46 dESTAKGi~KyL~elGvPas 65 (119)
T PF08986_consen 46 DESTAKGIFKYLKELGVPAS 65 (119)
T ss_dssp CCHHHHHHHHHHHHCT----
T ss_pred chHHHHHHHHHHHHcCCCCC
Confidence 56778999999999999754
No 183
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=20.58 E-value=1.3e+02 Score=23.99 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=55.2
Q ss_pred CCccHHHHHHHHHHhhCCCHHHHHHHHHhCCCCccccchhhccc-cC---CCCcC----CHHHHHHHHHHhc--------
Q 030467 4 LSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ-PQ---SKSLT----DTRHLEELYNRYK-------- 67 (177)
Q Consensus 4 l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~-~~---~~~~~----~~~~l~~lF~~Y~-------- 67 (177)
|+..+-+.|..|.+--+..-+.|..+=.+..==+..|.+..|.. |. ++... ....+-.-++.|-
T Consensus 19 ls~~eL~~l~~~~~~a~~rl~aa~~L~~na~~iV~~A~~~l~~~~P~l~~pGG~~y~~~r~aaC~RD~~~yLR~itY~l~ 98 (164)
T CHL00173 19 PSSSDLESVQGNIQRAAARLEAAEKLASNHEAVVKEAGDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCLV 98 (164)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 56666677777766554444444443333333367788887753 21 11111 2355666556552
Q ss_pred --CCCC-CccCHHHHHHHHhHcCCCCCCHH
Q 030467 68 --DPYL-DMILVDGITLLCNDLQVDPQDIV 94 (177)
Q Consensus 68 --d~~~-d~I~~dG~~~~~edLgv~~ed~~ 94 (177)
+.++ |.+++.|+-..-..|||+++.++
T Consensus 99 aG~~~~lde~gl~Glre~Y~sLgVP~~~~v 128 (164)
T CHL00173 99 VGGTGPVDEWGIAGAREVYRTLNLPTSAYV 128 (164)
T ss_pred cCCCccccHHHHhHHHHHHHHhCCCHHHHH
Confidence 3334 78999999999999999987544
No 184
>PF13730 HTH_36: Helix-turn-helix domain
Probab=20.49 E-value=1.7e+02 Score=17.88 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=16.1
Q ss_pred HHHHHHhhCCCHHH---HHHHHHhCCC
Q 030467 12 LQQFVSITGASEKA---ALQALKASDW 35 (177)
Q Consensus 12 i~~F~~~T~~s~~~---A~~~L~~~~w 35 (177)
+++..+.+|.++.+ |+.-|++.||
T Consensus 28 ~~~la~~~g~s~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 28 QETLAKDLGVSRRTVQRAIKELEEKGL 54 (55)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCcC
Confidence 56777788888766 4455555665
No 185
>PRK08406 transcription elongation factor NusA-like protein; Validated
Probab=20.47 E-value=76 Score=24.50 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred CCCccHHHHHHHHHHhhCCCHHH
Q 030467 3 KLSRSNRDKLQQFVSITGASEKA 25 (177)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~ 25 (177)
+|++++...|..|.++||++...
T Consensus 4 ~l~~~~~~~i~~fe~~t~~~~~d 26 (140)
T PRK08406 4 KLTTEEIRYIALFESITGATVKD 26 (140)
T ss_pred EECHHHHHHHHHHHHHhCCCceE
Confidence 58899999999999999998765
No 186
>CHL00124 acpP acyl carrier protein; Validated
Probab=20.44 E-value=2.4e+02 Score=18.91 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHHHHHHHhhCccccc-cccHHHHHhhhhhcCCCcHHHHHHHHHH
Q 030467 58 HLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMC-EFSKQEFIGGLQSLGIDSLDKFRERISF 136 (177)
Q Consensus 58 ~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~L~la~~l~a~~~g-~~tr~eF~~g~~~l~~dsl~~lk~~l~~ 136 (177)
.+.+++...-+-+++.|+++- .|.+|||++--+..-| .-.+.- ..| .|+-+++ .++.|+..+-.+|..
T Consensus 9 ~l~~ii~~~~~~~~~~i~~d~--~l~~dlg~DSl~~~el--i~~le~-~f~i~i~~~~~------~~~~tv~~l~~~i~~ 77 (82)
T CHL00124 9 KVQSIVAEQLGIEKSEVTLDA--NFTRDLGADSLDVVEL--VMAIEE-KFDIEIPDEDA------EKISTLQEAVDFISQ 77 (82)
T ss_pred HHHHHHHHHHCCCHHHCCCCc--chhhhcCCcHHHHHHH--HHHHHH-HHCCccCHHHH------HHcCCHHHHHHHHHH
Confidence 444555444433334565554 6778898864333333 333322 233 5666665 246788888888765
Q ss_pred H
Q 030467 137 M 137 (177)
Q Consensus 137 l 137 (177)
.
T Consensus 78 ~ 78 (82)
T CHL00124 78 K 78 (82)
T ss_pred H
Confidence 3
No 187
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=20.43 E-value=2e+02 Score=18.99 Aligned_cols=34 Identities=6% Similarity=0.173 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhc--CCCCCccCHHHHHHHHhHcCCCCCC
Q 030467 56 TRHLEELYNRYK--DPYLDMILVDGITLLCNDLQVDPQD 92 (177)
Q Consensus 56 ~~~l~~lF~~Y~--d~~~d~I~~dG~~~~~edLgv~~ed 92 (177)
...|++.|++-. -. .++.+-...||.+|||+..-
T Consensus 13 ~~~Le~~fe~~~y~~~---~~~~~~r~~la~~lgl~~~v 48 (58)
T TIGR01565 13 KEKMRDFAEKLGWKLK---DKRREEVREFCEEIGVTRKV 48 (58)
T ss_pred HHHHHHHHHHcCCCCC---CCCHHHHHHHHHHhCCCHHH
Confidence 456677776622 21 24567889999999998653
No 188
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=20.32 E-value=1.5e+02 Score=18.08 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVM 95 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~~ 95 (177)
...|+++|..-. ..+.+-+..+.+.+|+++..|..
T Consensus 12 ~~~Le~~f~~~~-----~P~~~~~~~la~~~~l~~~qV~~ 46 (59)
T cd00086 12 LEELEKEFEKNP-----YPSREEREELAKELGLTERQVKI 46 (59)
T ss_pred HHHHHHHHHhCC-----CCCHHHHHHHHHHHCcCHHHHHH
Confidence 466777887722 45667888999999998876654
No 189
>PF07288 DUF1447: Protein of unknown function (DUF1447); InterPro: IPR009907 This family consists of several bacterial proteins of around 70 residues in length. The function of this family is unknown.
Probab=20.18 E-value=80 Score=21.84 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=17.7
Q ss_pred hCCCHHHHHHHHHhC-CCCccc
Q 030467 19 TGASEKAALQALKAS-DWHLEG 39 (177)
Q Consensus 19 T~~s~~~A~~~L~~~-~w~le~ 39 (177)
.+-|+..|+++|+.+ ++|+|-
T Consensus 25 Ea~s~~evR~~ve~~t~yNIEf 46 (69)
T PF07288_consen 25 EAESEVEVRKLVEDNTPYNIEF 46 (69)
T ss_pred EcCCHHHHHHHHHhCCCcCEEE
Confidence 455789999999999 999864
No 190
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=20.08 E-value=2.6e+02 Score=19.16 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=35.3
Q ss_pred HHHHhhhhhcCCCcHHHHHHHH-HHHHHHccChhHH---HHHHHHHhhhhhccCCcccChHhHHhhh
Q 030467 113 QEFIGGLQSLGIDSLDKFRERI-SFMRAELKDEQKF---REIYNFAFAWAKEKVIVFLFLRISTCKL 175 (177)
Q Consensus 113 ~eF~~g~~~l~~dsl~~lk~~l-~~l~~~l~~~~~F---k~iY~ftF~f~~~~gqk~L~le~A~~~~ 175 (177)
.||..|.. |-.||..|-+.- ..++....+...| |.|+.|.=.++.. +.++.+.|+..+
T Consensus 16 ~Ew~~g~~--g~psI~~le~~yG~~WR~~~~~~~~y~rRK~Ii~~I~~l~~~---~g~~~~~ai~~l 77 (81)
T PF12550_consen 16 REWFTGLN--GQPSIRSLEKKYGSKWRRDSKERRTYSRRKVIIDFIERLANE---RGISEEEAIEIL 77 (81)
T ss_pred HHHhcCCC--CCCCHHHHHHHhChhhccCcccchhHHHHHHHHHHHHHHHHH---cCCCHHHHHHHH
Confidence 35555522 345666666554 5566544444445 6677777666544 778889898876
No 191
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=20.01 E-value=1.3e+02 Score=22.88 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHhHcCCCCCCHH
Q 030467 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIV 94 (177)
Q Consensus 56 ~~~l~~lF~~Y~d~~~d~I~~dG~~~~~edLgv~~ed~~ 94 (177)
..-..++|..|-....|.-+.+-+...++++|++++.+.
T Consensus 103 ~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~ 141 (193)
T PF01323_consen 103 DAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFD 141 (193)
T ss_dssp HHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHH
T ss_pred hHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHH
Confidence 355677888877655566677789999999999886543
Done!