BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030471
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7
PE=1 SV=1
Length = 260
Score = 296 bits (757), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 139/177 (78%), Positives = 155/177 (87%)
Query: 1 MDIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENS 60
MDIEQ+QAE+ID VK+AS K ALG +I+EATS PSLFAFSEILA+PN+A+ EGT +S
Sbjct: 1 MDIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDS 60
Query: 61 KYLDMLRLFAHGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELD 120
YLD+LRLFAHGTW DYK NA LP L PDQ+LKLKQLTVLTLAE+NKVLPYD LM ELD
Sbjct: 61 VYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELD 120
Query: 121 VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
V+NVRELEDFLINECMY GIVRGKLDQL+RCFEV FAAGRDLRPGQLG+M+ TLSNW
Sbjct: 121 VSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNW 177
>sp|Q55BD5|CSN7_DICDI COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum
GN=csn7 PE=1 SV=1
Length = 259
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 11 IDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFA 70
+ FV A + KG A+ S+I +A + PS+F F E+L +PN+ + + TE Y D+L +FA
Sbjct: 14 LKQFVVLAKSSKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKETEFKNYYDLLLIFA 73
Query: 71 HGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDF 130
+G++ DYKN LPQL P + KLKQLT++ L+ T+ V+PY L E++++TNVRELED
Sbjct: 74 YGSFIDYKNKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELEDL 133
Query: 131 LINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+I + +Y I++GKLDQ + E+ F+ GRD++P QL SMI L+NW
Sbjct: 134 II-DSIYQNIIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNNW 179
>sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1
SV=1
Length = 264
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Query: 8 AELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLR 67
+ L++ F+ A G+AL ++I + P ++ F E+L + N+ E N+ YL +L
Sbjct: 9 SNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68
Query: 68 LFAHGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVREL 127
LFA+GT+ DY N LP+L Q KLK LT+++LA K +PY L+++L++ N+REL
Sbjct: 69 LFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL 128
Query: 128 EDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
ED +I E +YT I++GKLDQ + EV F GRD+R + ++++TL W
Sbjct: 129 EDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>sp|Q2KI56|CSN7B_BOVIN COP9 signalosome complex subunit 7b OS=Bos taurus GN=COPS7B PE=2
SV=1
Length = 264
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Query: 8 AELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLR 67
+ L++ F+ A G+AL ++I + P ++ F E+L + N+ E N+ YL +L
Sbjct: 9 SNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68
Query: 68 LFAHGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVREL 127
LFA+GT+ DY N LP+L Q KLK LT+++LA K +PY L+++L++ N+REL
Sbjct: 69 LFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL 128
Query: 128 EDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
ED +I E +YT I++GKLDQ + EV F GRD+R + ++++TL W
Sbjct: 129 EDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b OS=Mus musculus GN=Cops7b PE=1
SV=1
Length = 264
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Query: 8 AELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLR 67
+ L++ F+ A G+AL ++I + P ++ F E+L + N+ E N+ YL +L
Sbjct: 9 SNLLEQFILLAKGTSGSALTTLISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68
Query: 68 LFAHGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVREL 127
LFA+GT+ DY N LP+L Q KLK LT+++LA K +PY L+++L++ N+REL
Sbjct: 69 LFAYGTYPDYIANKESLPELSVAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL 128
Query: 128 EDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
ED +I E +YT I++GKLDQ + EV F GRD+R + ++++TL W
Sbjct: 129 EDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>sp|Q9V4S8|CSN7_DROME COP9 signalosome complex subunit 7 OS=Drosophila melanogaster
GN=CSN7 PE=1 SV=2
Length = 278
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 10 LIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLF 69
++ F A + GAAL VI +A P++F F E+LA P++ + + +SK+ + L LF
Sbjct: 19 FLEKFCVLAKSSTGAALLDVIRQALEAPNVFVFGELLAEPSVLQLKDGPDSKHFETLNLF 78
Query: 70 AHGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELED 129
A+GT+ +Y+ +L P KL+ LT+++LA K +PY L+ EL++ NVR LED
Sbjct: 79 AYGTYKEYRAQPEKFIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLED 138
Query: 130 FLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+I E +Y I+ GKL Q R EV +A GRD+ PG G +++TL W
Sbjct: 139 III-EAIYADIIHGKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAW 185
>sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a OS=Mus musculus GN=Cops7a PE=1
SV=2
Length = 275
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 12 DHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAH 71
+ F+ A + KGAAL ++I + P ++ F E+L +PN+ E ++ + +L +FA+
Sbjct: 13 EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAY 72
Query: 72 GTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFL 131
GT++DY A +LP L Q KL+ L+V+TLA K +PY L+E L + NVR+LED +
Sbjct: 73 GTYADYLAEARNLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLV 132
Query: 132 INECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
I E +Y ++RG LDQ + EV ++ GRD++ L ++ QTL W
Sbjct: 133 I-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEW 177
>sp|Q5R762|CSN7A_PONAB COP9 signalosome complex subunit 7a OS=Pongo abelii GN=COPS7A PE=2
SV=1
Length = 275
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 12 DHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAH 71
+ F+ A + KGAAL ++I + P ++ F E+L +PN+ E ++ + +L +FA+
Sbjct: 13 EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAY 72
Query: 72 GTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFL 131
GT++DY A +LP L Q KL+ L+V+TLA K +PY L+E L + NVR+LED +
Sbjct: 73 GTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLV 132
Query: 132 INECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
I E +Y ++RG LDQ + EV ++ GRD++ L ++ +TL W
Sbjct: 133 I-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a OS=Homo sapiens GN=COPS7A PE=1
SV=1
Length = 275
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 12 DHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAH 71
+ F+ A + KGAAL ++I + P ++ F E+L +PN+ E ++ + +L +FA+
Sbjct: 13 EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAY 72
Query: 72 GTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFL 131
GT++DY A +LP L Q KL+ L+V+TLA K +PY L+E L + NVR+LED +
Sbjct: 73 GTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLV 132
Query: 132 INECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
I E +Y ++RG LDQ + EV ++ GRD++ L ++ +TL W
Sbjct: 133 I-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>sp|Q7SGS1|CSN7A_NEUCR COP9 signalosome complex subunit 7a OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-7a PE=1 SV=1
Length = 417
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 25/184 (13%)
Query: 16 KQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGT-ENSKYLDMLRLFAHGTW 74
K A++ + AA ++ TS P+ F F+E+L P I E + E S YL +L++F+HGT+
Sbjct: 18 KSATSPRAAA--DLVTRVTSAPNTFIFTELLQTPQIQSLEYSHEFSSYLTLLQIFSHGTY 75
Query: 75 SDYKNNAGHLPQLVPDQVLKLKQLTVLTLA----------------ETNKVLP----YDE 114
+DY NA LP L DQ LKL+QL++LTL E N+ P Y
Sbjct: 76 ADYIANASALPALNDDQKLKLRQLSLLTLVANDGSNVPLDYDAMQRENNQAQPPNQSYAS 135
Query: 115 LMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV-QFAAGRDLRPGQLGSMIQT 173
L L++++ RELE+ +I+ +Y G++ G+LD ++ AA RD+ + ++ +
Sbjct: 136 LTRRLELSSARELEELVIS-AIYAGLIEGQLDPANEMVQINSVAALRDVPARGVNGLLSS 194
Query: 174 LSNW 177
L W
Sbjct: 195 LQGW 198
>sp|Q00648|CSN7_EMENI COP9 signalosome complex subunit 7 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnG PE=1 SV=1
Length = 327
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 1 MD-IEQRQAELIDHFVKQASNQKGAA---LGSVIVEATSQPSLFAFSEILAVPNIAEFEG 56
MD + R + + F+ + + + S+I ATS P + F+E+L P +
Sbjct: 1 MDQVHHRALDALQSFIALTDSSSATSPRYIASIITNATSSPHTYVFAELLERPAVQALRS 60
Query: 57 ----TENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPY 112
E YL +L +FA GTW DY+ +LP L +Q KL+ LT+L+LA T K L Y
Sbjct: 61 PDTPAEFQSYLTLLEIFAWGTWQDYQQTP-NLPPLSEEQARKLRLLTLLSLASTIKPLTY 119
Query: 113 DELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV---QFAAGRDLRPGQLGS 169
+ LM L ++ ELE L+ +Y+ ++ G+L V A RD++P L +
Sbjct: 120 EALMTSLSLSAPSELES-LVTTAIYSSLITGRLSPATNPPTVNVTSVAPLRDVKPSSLPT 178
Query: 170 MIQTLSNW 177
MI TL+ W
Sbjct: 179 MISTLTAW 186
>sp|P68395|CSN7_BRAOL COP9 signalosome complex subunit 7 (Fragments) OS=Brassica oleracea
GN=CSN7 PE=1 SV=1
Length = 71
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 4/62 (6%)
Query: 65 MLRLFAHGTWSDYKNNAGHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNV 124
++RLFAHGTW DYK NA +PQL PDQ+ LKQLTVLTLAE+NK + + M E+D
Sbjct: 8 LVRLFAHGTWGDYKCNASRIPQLSPDQI--LKQLTVLTLAESNK--KWADNMSEIDKKEA 63
Query: 125 RE 126
E
Sbjct: 64 EE 65
>sp|A7SPX9|EIF3M_NEMVE Eukaryotic translation initiation factor 3 subunit M
OS=Nematostella vectensis GN=v1g192238 PE=3 SV=1
Length = 379
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 9 ELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRL 68
EL+ + + ++ S +V ++P++ IL++ +A +G +L++
Sbjct: 189 ELLSTYTDENASAAREDAKSCVVSCLTKPNVLIMDNILSLKPVAVLQG---DPIYQLLQI 245
Query: 69 FAHGTWSDYK----NNAGHLPQLVPDQVLKLKQLTVLTLAETNKV---LPYDELMEELDV 121
F G DYK +N + + + LK++ VLTL K + Y++L +L +
Sbjct: 246 FVSGDVQDYKKFYDSNTDFINSIGLSHEMNLKKMRVLTLMSIGKETDEISYEDLATKLGI 305
Query: 122 TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++ E+E FLI E + TG+V+ +LDQ+ R + A R Q ++ L W
Sbjct: 306 SS-DEIEQFLI-EAIQTGLVKARLDQVHRKVIISSVAQRTFGINQWQNLHSRLVKW 359
>sp|Q94261|EIF3M_CAEEL COP9/Signalosome and eIF3 complex-shared subunit 1
OS=Caenorhabditis elegans GN=cif-1 PE=1 SV=1
Length = 390
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Query: 7 QAELIDHFVKQASNQKGAALGS---------------VIVEATSQPSLFAFSEILAVPNI 51
+A L+D V QA+ A LG+ + A P F+F + + +
Sbjct: 178 RALLVDQRVDQAAKVMTALLGTYTEKDAAAARDDAMECVRTAVVDPKSFSFDHLERLSAV 237
Query: 52 AEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPDQVL--------KLKQLTVLTL 103
+ T + L LF GT DYK P+ V + + K++ LT+++L
Sbjct: 238 KALK-TSDPLMFTALELFISGTLKDYKEFVAKNPKFVTEHLKVDETILLKKIRLLTLMSL 296
Query: 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154
AE + DEL ++LD+ LE+F+I+ I GK++++ R V
Sbjct: 297 AEEKNEISLDELAKQLDILADETLEEFVIDAIQVNAI-SGKINEMARTLIV 346
>sp|Q5ZJ64|EIF3M_CHICK Eukaryotic translation initiation factor 3 subunit M OS=Gallus
gallus GN=EIF3M PE=2 SV=1
Length = 374
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 12/177 (6%)
Query: 8 AELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLR 67
EL+ + + ++Q IV A P+ F F +LA+ + EG D+L
Sbjct: 186 VELLGSYTEDNASQARVDAHRCIVRALKDPNTFLFDHLLALKPVKFLEG---ELIHDLLT 242
Query: 68 LFAHGTWSD----YKNNAGHLPQ---LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELD 120
+F Y+NN + L + K++ LT + +A NK + +D + +EL
Sbjct: 243 IFVSAKLVSYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQ 302
Query: 121 VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+ ++E F+I+ + T +V K+DQ +R V + R Q + TL+ W
Sbjct: 303 I-GADDVEAFVID-AVKTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNTW 357
>sp|Q99JX4|EIF3M_MOUSE Eukaryotic translation initiation factor 3 subunit M OS=Mus
musculus GN=Eif3m PE=2 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 9 ELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRL 68
EL+ + + ++Q IV A P+ F F +L + + EG D+L +
Sbjct: 187 ELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEG---ELIHDLLTI 243
Query: 69 FAHGTWSD----YKNNAGHLPQ---LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDV 121
F + Y+NN + L + K++ LT + +A NK + +D + +EL +
Sbjct: 244 FVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQI 303
Query: 122 TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++E F+I+ + T +V K+DQ +R V + R Q + TL+ W
Sbjct: 304 -GADDVEAFVID-AVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 357
>sp|Q7L2H7|EIF3M_HUMAN Eukaryotic translation initiation factor 3 subunit M OS=Homo
sapiens GN=EIF3M PE=1 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 9 ELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRL 68
EL+ + + ++Q IV A P+ F F +L + + EG D+L +
Sbjct: 187 ELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEG---ELIHDLLTI 243
Query: 69 FAHGTWSD----YKNNAGHLPQ---LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDV 121
F + Y+NN + L + K++ LT + +A NK + +D + +EL +
Sbjct: 244 FVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQI 303
Query: 122 TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++E F+I+ + T +V K+DQ +R V + R Q + TL+ W
Sbjct: 304 -GADDVEAFVID-AVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 357
>sp|Q5R8C4|EIF3M_PONAB Eukaryotic translation initiation factor 3 subunit M OS=Pongo
abelii GN=EIF3M PE=2 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 9 ELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRL 68
EL+ + + ++Q IV A P+ F F +L + + EG D+L +
Sbjct: 187 ELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEG---ELIHDLLTI 243
Query: 69 FAHGTWSD----YKNNAGHLPQ---LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDV 121
F + Y+NN + L + K++ LT + +A NK + +D + +EL +
Sbjct: 244 FVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQI 303
Query: 122 TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++E F+I+ + T +V K+DQ +R V + R Q + TL+ W
Sbjct: 304 -GADDVEAFVID-AVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 357
>sp|Q3T148|EIF3M_BOVIN Eukaryotic translation initiation factor 3 subunit M OS=Bos taurus
GN=EIF3M PE=2 SV=2
Length = 373
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 9 ELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRL 68
EL+ + + ++Q IV A P+ F F +L + + EG D+L +
Sbjct: 187 ELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEG---ELIHDLLTI 243
Query: 69 FAHGTWSD---YKNNAGHLPQ---LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVT 122
F + Y+NN + L + K++ LT + +A NK + +D + +EL +
Sbjct: 244 FVSAKLAYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQELQI- 302
Query: 123 NVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++E F+I+ + T +V K+DQ +R V + R Q + TL+ W
Sbjct: 303 GADDVEAFVID-AVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 356
>sp|Q6DK91|EIF3M_XENTR Eukaryotic translation initiation factor 3 subunit M OS=Xenopus
tropicalis GN=eif3m PE=2 SV=1
Length = 374
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 12/176 (6%)
Query: 9 ELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRL 68
EL+ + ++Q IV A P F +LA+ + EG D+L +
Sbjct: 187 ELLGSYTDDNASQARLDAHKCIVRALKDPKAFLLDHLLALKPVKFLEG---ELIHDLLTI 243
Query: 69 FAHGTWSDY----KNNAGHLPQL---VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDV 121
F S Y +NN + L + K++ LT + +A NK + +D + +EL +
Sbjct: 244 FVSAKLSSYVKFYQNNKDFIDSLGLSHEQNMEKMRLLTFMGMAVDNKEISFDTIQQELQI 303
Query: 122 TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
E+E F+I+ + T +V K+DQ ++ V + R Q + TL+ W
Sbjct: 304 -GADEVEAFIID-AVKTKMVYCKIDQTQKRVVVSHSTHRTFGKQQWQQLYDTLNTW 357
>sp|Q292F0|EIF3M_DROPS Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
pseudoobscura pseudoobscura GN=Tango7 PE=3 SV=1
Length = 387
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +LA+ + EG D+L +F Y + V
Sbjct: 209 IVTALADPNTFLLDPLLALKPVRFLEG---DLIHDLLSIFVSDKLPSYVQFYEDHKEFVN 265
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ LT + LAE+N + +D L +EL +T E+E F+I + + T +VR
Sbjct: 266 SQGLNHEQNMKKMRLLTFMQLAESNPEMTFDTLTKELQITE-DEVEPFVI-QVLKTKLVR 323
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+LDQ R + R Q + L W
Sbjct: 324 ARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW 358
>sp|B4GDM5|EIF3M_DROPE Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
persimilis GN=Tango7 PE=3 SV=1
Length = 387
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +LA+ + EG D+L +F Y + V
Sbjct: 209 IVTALADPNTFLLDPLLALKPVRFLEG---DLIHDLLSIFVSDKLPSYVQFYEDHKEFVN 265
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ LT + LAE+N + +D L +EL +T E+E F+I + + T +VR
Sbjct: 266 SQGLNHEQNMKKMRLLTFMQLAESNPEMTFDTLTKELQITE-DEVEPFVI-QVLKTKLVR 323
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+LDQ R + R Q + L W
Sbjct: 324 ARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW 358
>sp|A8WQY8|EIF3M_CAEBR COP9/Signalosome and eIF3 complex-shared subunit 1
OS=Caenorhabditis briggsae GN=cif-1 PE=3 SV=1
Length = 390
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 6 RQAELIDHFVKQASNQKGAALGS---------------VIVEATSQPSLFAFSEILAVPN 50
+A L+D QA+ A LG+ + A P F+F + +
Sbjct: 177 HRALLVDQRADQAAKVMTALLGTYTEKDAATARDDAMECVRTAVVDPKSFSFDHLERLSA 236
Query: 51 IAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPD-----QVLKLKQ---LTVLT 102
+ + ++ + L LF GT DY+ P+ V D +V+ LK+ LT+++
Sbjct: 237 VKALKSSDPLMF-TALELFISGTLKDYQQFVAKNPKFVTDYLKVDEVILLKKIRLLTLMS 295
Query: 103 LAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148
LAE + DEL ++LD+ LE+F+I+ I GK++++
Sbjct: 296 LAEEKNEIKLDELAKQLDIHADETLEEFVIDAIQVNAI-SGKINEM 340
>sp|B4MY75|EIF3M_DROWI Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
willistoni GN=Tango7 PE=3 SV=1
Length = 387
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + V
Sbjct: 209 IVTALADPNTFLLDPLLSLKPVRFLEG---DLIHDLLSIFVSEKLPAYVEFYEEHKEFVN 265
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ LT + LAE+N + ++ L +EL +T E+E F+I E + T +VR
Sbjct: 266 SQGLNHEQNMKKMRLLTFMQLAESNAEMSFEALTKELQITE-NEVEPFVI-EVLKTKLVR 323
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+LDQ R + R Q + L W
Sbjct: 324 ARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW 358
>sp|B3MCZ5|EIF3M_DROAN Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
ananassae GN=Tango7 PE=3 SV=1
Length = 387
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + V
Sbjct: 209 IVTALADPNTFLLDPLLSLKPVRFLEG---DLIHDLLSIFVSDKLPSYVQFYEDHKEFVN 265
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ LT + LAE++ + +D L +EL +T E+E F+I E + T +VR
Sbjct: 266 SQGLNHEQNMKKMRLLTFMQLAESSPEMTFDTLTKELQITE-DEVEPFVI-EVLKTKLVR 323
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+LDQ R + R Q + L W
Sbjct: 324 ARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW 358
>sp|Q09722|EIF3M_SCHPO Eukaryotic translation initiation factor 3 subunit M
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=eif3m PE=1 SV=2
Length = 402
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSK 61
D EQ A L++ VK ++ A+ ++ A + P F F +I+ +P + + E +
Sbjct: 188 DDEQSFAFLLEA-VKMDNSTADEAVRELVQRAVNSPKYFFFDDIVTLPPVQQLEQST--- 243
Query: 62 YLDMLRLFAHGTWSDY----KNNAGHLPQLVPDQ---VLKLKQLTVLTLAET--NKVLPY 112
L +L + + G DY N H D+ K+K LT+ +LA N L Y
Sbjct: 244 -LQLLGILSGGMTDDYVSWVAENHAHCQHQKFDEDAIARKMKLLTIASLATQAPNNTLSY 302
Query: 113 DELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172
++ + L + + E+E ++I + + G+V G++ QL + + ++ R + ++ +
Sbjct: 303 GDVAKSLKI-DENEVELWII-DVIRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVALHE 360
Query: 173 TLSNW 177
L+ W
Sbjct: 361 KLAKW 365
>sp|B4KT65|EIF3M_DROMO Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
mojavensis GN=Tango7 PE=3 SV=1
Length = 387
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + V
Sbjct: 209 IVTALADPNTFLLDPLLSLKPVRFLEG---DLIHDLLSIFVSDKLPSYVQFYEDHKEFVN 265
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ LT + LAE+ + +D L +EL + N E+E F+I E + T +VR
Sbjct: 266 SQGLNHEQNMKKMRLLTFMQLAESYPEMTFDTLTKELQI-NEDEVEPFVI-EVLKTKLVR 323
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+LDQ R + R Q + L W
Sbjct: 324 ARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW 358
>sp|B4JW83|EIF3M_DROGR Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
grimshawi GN=Tango7 PE=3 SV=1
Length = 387
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + V
Sbjct: 209 IVTALADPNTFLLDPLLSLKPVRFLEG---DLIHDLLSIFVSDKLPSYVQFYEDHKEFVN 265
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ LT + LAE+ + +D L +EL + N E+E F+I E + T +VR
Sbjct: 266 SQGLNHDQNMKKMRLLTFMQLAESYPEMSFDTLTKELQI-NDDEVEPFVI-EVLKTKLVR 323
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+LDQ R + R Q + L W
Sbjct: 324 ARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW 358
>sp|Q4WG69|EIF3M_ASPFU Eukaryotic translation initiation factor 3 subunit M OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=AFUA_7G03980 PE=3 SV=1
Length = 468
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 29 VIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLP-QL 87
+ A P++F F+ + A I + +S ++L +F T Y++ P +
Sbjct: 238 ALTSALKSPAVFDFTSLTAADAIQALRSS-DSTLFELLEIFTADTLDAYEDFIAATPLET 296
Query: 88 VPDQVL---------KLKQLTVLTLAET--NKVLPYDELMEELDVTNVRELEDFLINECM 136
+ VL K++ LT+ +LA + ++ LPY + L V V ++E ++I+ +
Sbjct: 297 ISGGVLVDGAEALQTKMRLLTLASLAASTPSRSLPYTTIASALRVP-VEDVEKWVID-TI 354
Query: 137 YTGIVRGKLDQLRRCFEVQFAAGR 160
G+V GKL QLR F V A R
Sbjct: 355 RAGLVEGKLSQLRSEFLVHRATYR 378
>sp|B0YCA6|EIF3M_ASPFC Eukaryotic translation initiation factor 3 subunit M OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=AFUB_089510 PE=3 SV=1
Length = 468
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 29 VIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLP-QL 87
+ A P++F F+ + A I + +S ++L +F T Y++ P +
Sbjct: 238 ALTSALKSPAVFDFTSLTAADAIQALRSS-DSTLFELLEIFTADTLDAYEDFIAATPLET 296
Query: 88 VPDQVL---------KLKQLTVLTLAET--NKVLPYDELMEELDVTNVRELEDFLINECM 136
+ VL K++ LT+ +LA + ++ LPY + L V V ++E ++I+ +
Sbjct: 297 ISGGVLVDGAEALQTKMRLLTLASLAASTPSRSLPYTTIASALRVP-VEDVEKWVID-TI 354
Query: 137 YTGIVRGKLDQLRRCFEVQFAAGR 160
G+V GKL QLR F V A R
Sbjct: 355 RAGLVEGKLSQLRSEFLVHRATYR 378
>sp|Q5DHT6|EIF3M_SCHJA Eukaryotic translation initiation factor 3 subunit M OS=Schistosoma
japonicum GN=SJCHGC06559 PE=2 SV=1
Length = 384
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 18 ASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY 77
A N + A+ I+ P L + ++ A+ + EG D ++F G + +
Sbjct: 204 AVNARQNAI-KCIISVLQDPCLLSHDQLYALKPVQYLEG---EPVHDFFKIFVSGDLNTF 259
Query: 78 KNNAGHLPQLVPDQ-------VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDF 130
KN P + V KL+ LT++ L+E L Y E +L + + ELE F
Sbjct: 260 KNFLAKHPNFLSHNNLSEEACVHKLRLLTLMQLSENVNELSYHEAATQLGL-KIEELEPF 318
Query: 131 LINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+I E + V KLDQ+++ + A R Q ++ TL W
Sbjct: 319 II-EAVRQRAVACKLDQVQKKILITGAFPRTFGRPQWINLHDTLVQW 364
>sp|A1DC62|EIF3M_NEOFI Eukaryotic translation initiation factor 3 subunit M OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=NFIA_024940 PE=3 SV=1
Length = 468
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 29 VIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLP-QL 87
+ A P +F F+ + A I + +S ++L +F T Y++ P +
Sbjct: 238 ALTSALKSPGVFDFTSLTAADAIQALRSS-DSTLFELLEIFTADTLDAYEDFIAATPLET 296
Query: 88 VPDQVL---------KLKQLTVLTLAET--NKVLPYDELMEELDVTNVRELEDFLINECM 136
+ VL K++ LT+ +LA + ++ LPY + L V V ++E ++I+ +
Sbjct: 297 ISGGVLADGAEALQTKMRLLTLASLAASTPSRSLPYATIASALRVP-VEDVEKWVID-TI 354
Query: 137 YTGIVRGKLDQLRRCFEVQFAAGR 160
G+V GKL QLR F V A R
Sbjct: 355 RAGLVEGKLSQLRSEFLVHRATYR 378
>sp|Q7Q068|EIF3M_ANOGA Eukaryotic translation initiation factor 3 subunit M OS=Anopheles
gambiae GN=AGAP012281 PE=3 SV=2
Length = 385
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + + V
Sbjct: 211 IVTALADPNTFLLDPLLSLKPVRFLEG---ELIHDLLSVFVSEKLPSYLEFYKNHKEFVN 267
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ L+ + LAE+N + + +L +EL + E+E F+I E + T +VR
Sbjct: 268 SQGLNHEQNIKKMRLLSFMQLAESNSEMTFQQLQDELQIKE-EEVEPFII-EVLKTKLVR 325
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++DQ R + R Q + L +W
Sbjct: 326 ARMDQRARKVHISSTMHRTFGRPQWQQLRDLLLSW 360
>sp|B4LJT9|EIF3M_DROVI Eukaryotic translation initiation factor 3 subunit M OS=Drosophila
virilis GN=Tango7 PE=3 SV=1
Length = 387
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + V
Sbjct: 209 IVTALADPNTFLLDPLLSLKPVRFLEG---DLIHDLLSIFVSDKLPSYVQFYEDHKEFVN 265
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ LT + LAE+ + +D L +EL + E+E F+I E + T +VR
Sbjct: 266 SQGLNHEQNMKKMRLLTFMQLAESYPEMTFDTLTKELQIGE-DEVEPFVI-EVLKTKLVR 323
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+LDQ R + R Q + L W
Sbjct: 324 ARLDQANRKVHISSTMHRTFGAPQWEQLRDLLQAW 358
>sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M
OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1
Length = 401
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 14 FVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTE---NSKYLDMLRLFA 70
F K+ S + V +E+ S L+ +L +P + EG+ NS +++++FA
Sbjct: 203 FTKEDSQEAQEDAVRVCIESISLQELYQSDYLLDLPAVQYLEGSTVSANSLTYELMKIFA 262
Query: 71 HGTWSDYKNNAGHLPQLVP-------DQVLKLKQLTVLTLAETNKVLPYDELMEELDVTN 123
+ P + D + K++ L++ TL +PY + + L + +
Sbjct: 263 TEQLDSFLQFQQKNPNFLSTIGLSNDDCLQKIRLLSLATLTSEQSKVPYSLISKMLQI-D 321
Query: 124 VRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
E+E ++IN M ++ KLDQL R V + R Q + Q S W
Sbjct: 322 ENEVEMWVIN-AMEGDLLDAKLDQLNRIVNVNSSTQRVFNKSQWSQLGQRFSVW 374
>sp|Q17D30|EIF3M_AEDAE Eukaryotic translation initiation factor 3 subunit M OS=Aedes
aegypti GN=AAEL004347 PE=3 SV=1
Length = 386
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + + V
Sbjct: 212 IVTALADPNTFLLDPLLSLKPVRFLEG---ELIHDLLSVFVSEKLPSYLQFYKNHKEFVN 268
Query: 90 DQVL-------KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q L K++ L+ + LAE+N + + +L +EL + E+E F+I E + T +VR
Sbjct: 269 SQGLNHEQNIKKMRLLSFMQLAESNPEMTFQQLQDELQIGE-NEVEPFII-EVLKTKLVR 326
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++DQ R + R Q + L W
Sbjct: 327 ARMDQKARKVHISSTMHRTFGRPQWQQLRDLLHAW 361
>sp|Q7T3B0|EIF3M_DANRE Eukaryotic translation initiation factor 3 subunit M OS=Danio rerio
GN=eif3m PE=2 SV=2
Length = 375
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 12/176 (6%)
Query: 9 ELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRL 68
EL+ + + ++Q IV A P+ + F +LA+ + EG D+L +
Sbjct: 187 ELLGSYTEDNASQARVDAHRCIVRALKDPNTYLFDHLLALKPVRFLEG---ELIHDLLTI 243
Query: 69 FAHGTWSDY----KNNAGHLPQL---VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDV 121
F Y ++N + L + K++ LT + +A K + ++ + +EL +
Sbjct: 244 FVSAKLISYVKFYQSNKDFIESLGLSHEQNMSKMRLLTFMGMAVEMKEISFETMQQELQI 303
Query: 122 TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++E F+I+ + T +V K+DQ +R V + R Q + TL +W
Sbjct: 304 -GAEDVEAFVID-AVRTKMVYSKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLCSW 357
>sp|A1CD85|EIF3M_ASPCL Eukaryotic translation initiation factor 3 subunit M OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ACLA_005680 PE=3 SV=1
Length = 471
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 29 VIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLP-QL 87
+ A P++F F+ + A I T +S ++L +F T Y++ P
Sbjct: 238 ALASALKSPAVFDFTSLTAADAIQALR-TSDSSLFELLEIFTADTLDAYEDFVAATPLAS 296
Query: 88 VPDQVL---------KLKQLTVLTLAET--NKVLPYDELMEELDVTNVRELEDFLINECM 136
+ VL KL+ LT+ ++A + ++ LPY + L V ++E ++I+ +
Sbjct: 297 ISGGVLADAGEALQNKLRLLTLASIAASAPSRSLPYATIASALRVPT-EDVEKWVID-TI 354
Query: 137 YTGIVRGKLDQLRRCFEVQFAAGR 160
G+V GKL QLR F V A R
Sbjct: 355 RAGLVEGKLSQLRSEFLVHRATYR 378
>sp|B0BN93|PSD13_RAT 26S proteasome non-ATPase regulatory subunit 13 OS=Rattus
norvegicus GN=Psmd13 PE=1 SV=1
Length = 376
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 39 LFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY---KNNAGHLPQLVPDQVLKL 95
+F F E+L P + T+ +D L F G + K+ G P L ++ L
Sbjct: 210 VFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTLKSAWGQQPDLAANEAQLL 269
Query: 96 KQLTVLTLAE-------TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148
+++ +L L E ++ L ++E+ + +T V ++E L+ + + G+VRG +D++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT-VNKVE-LLVMKALSVGLVRGSIDEV 327
Query: 149 RRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+ + + R L Q+ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIKGMKDRLELW 356
>sp|Q0CPV5|EIF3M_ASPTN Eukaryotic translation initiation factor 3 subunit M OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_04279
PE=3 SV=1
Length = 461
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLP-QLV 88
+ A S P++F F+ + A + T +S ++L +F T Y+ P +
Sbjct: 238 LTSALSHPAVFDFTPLTASDAVQALR-TSDSTLFELLEIFTADTLDAYEAFVAATPLASI 296
Query: 89 PDQVL---------KLKQLTVLTLAET--NKVLPYDELMEELDVTNVRELEDFLINECMY 137
VL K++ LT+ +LA + ++ LPY + L V ++E ++I+ +
Sbjct: 297 SGGVLAPAADALQNKMRLLTLASLAASTPSRSLPYATIASALRVP-AEDVEKWVID-TIR 354
Query: 138 TGIVRGKLDQLRRCFEVQFAAGR 160
G+V GKL QLR F V A R
Sbjct: 355 AGLVEGKLSQLRSEFLVHRATYR 377
>sp|Q9WVJ2|PSD13_MOUSE 26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus
GN=Psmd13 PE=1 SV=1
Length = 376
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 39 LFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY---KNNAGHLPQLVPDQVLKL 95
+F F E+L P + T+ +D L F G + K G P L ++ L
Sbjct: 210 VFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTLKCAWGQQPDLAANEAQLL 269
Query: 96 KQLTVLTLAE-------TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148
+++ +L L E ++ L ++E+ + +T V ++E L+ + + G+VRG +D++
Sbjct: 270 RKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT-VNKVE-LLVMKALSVGLVRGSIDEV 327
Query: 149 RRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
+ + + R L Q+ M L W
Sbjct: 328 DKRVHMTWVQPRVLDLQQIKGMKDRLELW 356
>sp|Q1DQB2|EIF3M_COCIM Eukaryotic translation initiation factor 3 subunit M
OS=Coccidioides immitis (strain RS) GN=CIMG_07501 PE=3
SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 18 ASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY 77
+SN+ ++ A + P +F F+ + + I E S + ++L +FA T Y
Sbjct: 235 SSNEARELAVRALISALTYPFVFDFTPLTSSDAIQNLRSAEPSLF-ELLEIFASDTLDAY 293
Query: 78 KNNAGHLP-----QLVPDQVLKLKQLTVLTLAE-----TNKVLPYDELMEELDVTNVREL 127
+ P L + ++ VLTLA ++ LPYD + L + ++
Sbjct: 294 EEFIKSTPLSSMHNLAESAEILQNKMRVLTLASLAASTPSRSLPYDSISNALRIPR-EDV 352
Query: 128 EDFLINECMYTGIVRGKLDQLRRCFEVQFAAGR 160
E ++I+ + G+V GKL QL+ F V A R
Sbjct: 353 EKWVID-TIRAGLVEGKLSQLKGEFLVHRATYR 384
>sp|Q2UDZ9|EIF3M_ASPOR Eukaryotic translation initiation factor 3 subunit M OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=AO090026000816
PE=3 SV=1
Length = 466
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 17 QASNQKGAALG-SVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWS 75
QAS+++ L + A + P++F F+ + A + + +S ++L +F T
Sbjct: 226 QASSKEARDLAIRALTSALTHPAVFDFTPLTASDAVQALRSS-DSTLFELLEIFTADTLD 284
Query: 76 DYKNNAGHLPQL-VPDQVL---------KLKQLTVLTLAET--NKVLPYDELMEELDVTN 123
Y+ P + VL K++ LT+ +LA + ++ LPY + L V
Sbjct: 285 AYEAFVTATPLAGISGGVLADAGEALQNKMRLLTLASLAASTPSRSLPYATIAASLRVP- 343
Query: 124 VRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGR 160
++E ++I+ + G+V GKL QLR F V A R
Sbjct: 344 AEDVEKWVID-TIRAGLVEGKLSQLRSEFLVHRATYR 379
>sp|B0WTN3|EIF3M_CULQU Eukaryotic translation initiation factor 3 subunit M OS=Culex
quinquefasciatus GN=CPIJ010525 PE=3 SV=1
Length = 386
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 30 IVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVP 89
IV A + P+ F +L++ + EG D+L +F Y + + V
Sbjct: 212 IVTALADPNTFLLDPLLSLKPVRFLEG---ELIHDLLSVFVSEKLPAYLQFYQNHKEFVN 268
Query: 90 DQ-------VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
Q + K++ L+ + LAE+N + + +L +EL + ++E F+I E + T +VR
Sbjct: 269 SQGLNHEQNIKKMRLLSFMQLAESNPEMTFAQLQDELQIGE-NDVEPFII-EVLKTKLVR 326
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++DQ R + R Q + L W
Sbjct: 327 ARMDQKARKVHISSTMHRTFGRPQWQQLRDLLHAW 361
>sp|Q0UXJ7|EIF3M_PHANO Eukaryotic translation initiation factor 3 subunit M
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=SNOG_03517 PE=3 SV=2
Length = 441
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 33 ATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPDQV 92
A + P+ F F ++ + +I + + + +L +F DY + V +
Sbjct: 232 ALTHPTHFDFQDLTDLDSIQALRNS-DPIFFQLLEIFNSDLLDDYNDFKDEHDGWVEESG 290
Query: 93 L-------KLKQLTVLTLAET---NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142
L K++ LT+ ++A + + LPYD++ + L +++ E+E ++I+ + G+V
Sbjct: 291 LDGAALNRKMRLLTLASMAASAGQTRSLPYDKIAKALQISS-EEVEMWVID-VIRAGLVE 348
Query: 143 GKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
GKL QL + F + + R Q + L W
Sbjct: 349 GKLSQLNQTFLIHRSTYRVFGDNQWREVSSRLDMW 383
>sp|Q6MDM0|RPOC_PARUW DNA-directed RNA polymerase subunit beta' OS=Protochlamydia
amoebophila (strain UWE25) GN=rpoC PE=3 SV=1
Length = 1388
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 43 SEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY-KNNAGHLPQLVPDQVLKLKQLTVL 101
+EI + + +F G + +K + ++R G ++ ++ HL D V+K +QLT
Sbjct: 1155 AEIAKIDGVVDFRGVQKNKRIVVVRDEMTGMEEEHLISHTKHLIIQRGDHVVKGQQLT-- 1212
Query: 102 TLAETNKVLPYDELMEELDVTNVRELEDFLINE 134
V+P+ E LD+ VREL+ +L+N+
Sbjct: 1213 ----DGLVIPH----EILDICGVRELQKYLVNQ 1237
>sp|Q4PEV8|EIF3M_USTMA Eukaryotic translation initiation factor 3 subunit M OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=UM01355 PE=3 SV=1
Length = 441
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 12/169 (7%)
Query: 18 ASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY 77
AS A + A P L+ F ++L V + + + + +S D+L++F GT +D+
Sbjct: 244 ASASTKEAAERTVAAALRLPRLYEFEDLLHVQAVLDLK-SASSPIFDLLKIFVGGTTADF 302
Query: 78 KNNAGHLP------QLVPDQVLKLKQLTVLTLAETNKV---LPYDELMEELDVTNVRELE 128
A L D +L +L L +V + Y + + L++ + ++E
Sbjct: 303 SAFASSHSSEFQRLNLSHDDLLHKIRLLDLADLCALRVSADVSYASIAKTLNIEH-DQVE 361
Query: 129 DFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
++I+ + G+V GKL Q+ F V + R Q S+ Q L W
Sbjct: 362 LWVID-VIRAGLVSGKLSQVNDAFRVYKSTHRQFGKEQWQSLEQRLVQW 409
>sp|Q5B5C1|EIF3M_EMENI Eukaryotic translation initiation factor 3 subunit M OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=AN4259 PE=3 SV=1
Length = 459
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 22/151 (14%)
Query: 29 VIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKN--NAGHLPQ 86
+ A + P++F F+ + A + + ++ ++L +F T Y++ +A +
Sbjct: 238 ALTSALTHPAVFDFTPLTAADAVQALRSS-DAPLFELLEIFTADTLDAYEDFISATPVEN 296
Query: 87 LVPDQVLKLKQLTVLT-----------------LAETNKVLPYDELMEELDVTNVRELED 129
++PD L + T + + L Y+ + L V E+E
Sbjct: 297 ILPDNALAPHAEALQTKIRLLTLASLAAAATTTTGPSARSLSYETIASALRVPQ-EEVEK 355
Query: 130 FLINECMYTGIVRGKLDQLRRCFEVQFAAGR 160
++I+ + G+V GKL QLR F V A R
Sbjct: 356 WVID-TIRAGLVEGKLSQLRSEFLVHRATYR 385
>sp|Q54NQ0|PSD13_DICDI 26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium
discoideum GN=psmD13 PE=2 SV=1
Length = 385
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 19 SNQKGAALG-SVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDY 77
S ++ A+L ++ + A +++ F +++A P + EG++++ + L+ F G +
Sbjct: 194 SQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQF 253
Query: 78 KNNAGHLPQLVPDQVL------KLKQ-LTVLTLAETNKVLPYDELMEELDVTNVR----- 125
+ ++ Q KL+Q +++L+L E P D+ + + +
Sbjct: 254 EGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDK--RSISFSKIAQATKL 311
Query: 126 ---ELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNW 177
E+E L+ + + +++G +DQ + + R L Q+ SM ++ W
Sbjct: 312 PLGEIEHLLM-KSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIAEW 365
>sp|Q9YX47|VP4_FDVS Uncharacterized protein VP4 OS=Fiji disease virus (isolate
Sugarcane) GN=S4 PE=4 SV=1
Length = 1146
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 38 SLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWS 75
S F EI+ PN F G +N DMLR +HG WS
Sbjct: 624 SEFGIREIVK-PNSVLFLGAKNEPVGDMLRRLSHGLWS 660
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,746,147
Number of Sequences: 539616
Number of extensions: 2431791
Number of successful extensions: 5954
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 5922
Number of HSP's gapped (non-prelim): 78
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)