Query 030471
Match_columns 177
No_of_seqs 112 out of 562
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 23:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 3.2E-50 1.1E-54 313.6 14.3 168 2-169 2-169 (169)
2 4b4t_O 26S proteasome regulato 100.0 9.7E-34 3.3E-38 245.8 6.9 153 23-177 211-373 (393)
3 3txn_A 26S proteasome regulato 99.4 1.6E-12 5.5E-17 112.7 11.2 136 24-161 221-366 (394)
4 4b4t_R RPN7, 26S proteasome re 98.8 2.6E-08 9.1E-13 86.6 11.0 142 24-167 248-403 (429)
5 3t5x_A PCI domain-containing p 98.8 4.5E-09 1.5E-13 83.3 3.9 96 61-157 82-193 (203)
6 4b4t_P 26S proteasome regulato 98.7 2.5E-08 8.7E-13 87.2 8.2 132 25-159 260-407 (445)
7 1ufm_A COP9 complex subunit 4; 98.5 3.5E-07 1.2E-11 62.8 6.6 64 94-159 15-78 (84)
8 4b4t_Q 26S proteasome regulato 98.3 4.6E-07 1.6E-11 75.6 5.5 101 59-161 296-406 (434)
9 4b4t_S RPN3, 26S proteasome re 98.1 2.1E-06 7.3E-11 76.6 4.7 94 60-154 343-445 (523)
10 3t5v_B Nuclear mRNA export pro 98.0 6.7E-06 2.3E-10 72.4 5.3 95 62-157 299-429 (455)
11 4b0z_A RPN12, 26S proteasome r 94.9 0.043 1.5E-06 43.6 5.8 74 60-134 136-214 (229)
12 1wi9_A Protein C20ORF116 homol 94.9 0.036 1.2E-06 36.5 4.3 55 100-156 12-66 (72)
13 1qgp_A Protein (double strande 89.9 0.48 1.6E-05 31.1 4.5 48 96-145 18-65 (77)
14 3lwf_A LIN1550 protein, putati 87.8 1 3.6E-05 33.6 5.7 66 87-155 22-87 (159)
15 3t8r_A Staphylococcus aureus C 87.6 0.85 2.9E-05 33.2 5.0 58 95-155 14-71 (143)
16 2hzt_A Putative HTH-type trans 87.6 2.3 8E-05 28.9 7.1 52 107-160 25-77 (107)
17 1qbj_A Protein (double-strande 87.5 1.8 6.2E-05 28.7 6.1 56 96-154 14-69 (81)
18 1i1g_A Transcriptional regulat 87.0 0.48 1.7E-05 33.7 3.3 37 106-144 15-51 (141)
19 2dbb_A Putative HTH-type trans 86.8 1.8 6E-05 31.2 6.4 46 101-148 15-63 (151)
20 2p5v_A Transcriptional regulat 86.7 1.2 4E-05 32.7 5.4 38 105-144 20-57 (162)
21 2cg4_A Regulatory protein ASNC 85.9 1.6 5.5E-05 31.5 5.7 46 101-148 14-62 (152)
22 2ia0_A Putative HTH-type trans 85.8 1.3 4.4E-05 33.1 5.3 70 105-176 27-106 (171)
23 2cfx_A HTH-type transcriptiona 85.4 1.1 3.8E-05 32.2 4.6 42 105-148 15-59 (144)
24 3cuo_A Uncharacterized HTH-typ 84.9 2.8 9.4E-05 27.4 6.1 40 105-146 34-73 (99)
25 2y75_A HTH-type transcriptiona 84.1 3 0.0001 29.2 6.4 49 94-144 11-59 (129)
26 2pn6_A ST1022, 150AA long hypo 83.7 3 0.0001 29.8 6.3 73 100-176 8-87 (150)
27 1xn7_A Hypothetical protein YH 83.6 1.3 4.5E-05 29.2 3.9 42 99-142 6-47 (78)
28 2htj_A P fimbrial regulatory p 82.9 3.3 0.00011 26.6 5.7 36 107-144 12-47 (81)
29 2e1c_A Putative HTH-type trans 82.0 1.1 3.8E-05 33.5 3.4 38 105-144 37-74 (171)
30 1oyi_A Double-stranded RNA-bin 81.9 2.6 8.8E-05 28.2 4.8 45 93-143 18-62 (82)
31 3i4p_A Transcriptional regulat 81.7 5.4 0.00018 29.2 7.1 47 100-148 8-57 (162)
32 1ylf_A RRF2 family protein; st 81.2 2.3 7.8E-05 30.9 4.9 47 95-144 17-63 (149)
33 1sfx_A Conserved hypothetical 81.1 3.4 0.00012 27.1 5.4 42 107-151 32-73 (109)
34 2cyy_A Putative HTH-type trans 80.8 1.3 4.5E-05 32.0 3.4 42 101-144 13-54 (151)
35 2k02_A Ferrous iron transport 79.7 1.5 5E-05 29.7 3.1 44 99-144 6-49 (87)
36 3jth_A Transcription activator 79.5 5.9 0.0002 26.1 6.2 38 108-147 35-72 (98)
37 3k69_A Putative transcription 79.4 3.1 0.00011 30.9 5.2 56 95-154 15-70 (162)
38 2heo_A Z-DNA binding protein 1 79.3 3.4 0.00012 25.9 4.6 44 96-143 14-57 (67)
39 2d1h_A ST1889, 109AA long hypo 79.0 4.5 0.00015 26.5 5.5 45 103-149 30-74 (109)
40 1xd7_A YWNA; structural genomi 78.5 3.4 0.00012 29.8 5.0 33 111-145 25-57 (145)
41 2jt1_A PEFI protein; solution 78.4 1.7 5.8E-05 28.5 3.0 35 107-143 22-56 (77)
42 3r0a_A Putative transcriptiona 78.2 6.8 0.00023 27.3 6.4 45 102-148 34-79 (123)
43 1ub9_A Hypothetical protein PH 78.1 3 0.0001 27.3 4.3 39 107-147 28-66 (100)
44 3df8_A Possible HXLR family tr 76.4 6.3 0.00022 27.0 5.7 51 94-146 27-78 (111)
45 4b4t_T 26S proteasome regulato 75.7 7.8 0.00027 31.3 6.9 94 39-132 119-222 (274)
46 2pg4_A Uncharacterized protein 75.7 2.6 8.9E-05 27.8 3.4 45 96-142 16-62 (95)
47 3tgn_A ADC operon repressor AD 75.0 3.7 0.00013 28.6 4.3 45 110-156 52-96 (146)
48 2v79_A DNA replication protein 74.6 9.3 0.00032 27.5 6.4 58 94-153 35-95 (135)
49 1yyv_A Putative transcriptiona 73.6 9.2 0.00031 27.1 6.2 61 94-158 35-96 (131)
50 1z7u_A Hypothetical protein EF 73.6 11 0.00037 25.6 6.4 48 108-157 34-82 (112)
51 2w25_A Probable transcriptiona 72.4 5 0.00017 28.7 4.5 39 105-145 17-55 (150)
52 2fsw_A PG_0823 protein; alpha- 72.3 13 0.00044 25.0 6.5 49 107-157 36-85 (107)
53 4hbl_A Transcriptional regulat 72.3 4 0.00014 28.8 3.9 47 107-155 53-99 (149)
54 3pqk_A Biofilm growth-associat 72.1 11 0.00039 24.8 6.1 39 108-148 35-73 (102)
55 2kko_A Possible transcriptiona 71.6 6.5 0.00022 26.7 4.8 37 108-146 37-73 (108)
56 2gxg_A 146AA long hypothetical 71.5 11 0.00038 26.0 6.2 43 107-151 48-90 (146)
57 3bpv_A Transcriptional regulat 71.0 8.8 0.0003 26.2 5.5 46 107-154 41-86 (138)
58 1u2w_A CADC repressor, cadmium 70.5 6.1 0.00021 27.4 4.5 38 107-146 54-91 (122)
59 3hsr_A HTH-type transcriptiona 70.4 7.8 0.00027 26.9 5.1 48 106-155 47-94 (140)
60 2nnn_A Probable transcriptiona 70.3 7.7 0.00026 26.6 5.0 44 108-153 51-94 (140)
61 3k0l_A Repressor protein; heli 70.1 8 0.00027 27.6 5.2 48 107-156 58-105 (162)
62 3bdd_A Regulatory protein MARR 69.2 7.1 0.00024 26.8 4.7 42 108-151 44-85 (142)
63 2vn2_A DNAD, chromosome replic 69.2 12 0.0004 26.4 5.8 53 95-149 36-89 (128)
64 2a61_A Transcriptional regulat 69.1 7.9 0.00027 26.7 4.9 47 107-155 45-91 (145)
65 1uly_A Hypothetical protein PH 68.6 9.2 0.00031 29.0 5.5 35 108-144 32-66 (192)
66 2fbh_A Transcriptional regulat 68.6 10 0.00035 26.1 5.4 45 106-152 49-93 (146)
67 1r1u_A CZRA, repressor protein 68.6 8.4 0.00029 25.8 4.8 37 108-146 38-74 (106)
68 4a5n_A Uncharacterized HTH-typ 68.1 25 0.00086 25.0 7.5 53 96-152 28-81 (131)
69 2p7v_B Sigma-70, RNA polymeras 67.8 6.7 0.00023 24.1 3.9 28 107-136 23-50 (68)
70 2oqg_A Possible transcriptiona 67.3 8.6 0.00029 25.7 4.6 37 108-146 33-69 (114)
71 3deu_A Transcriptional regulat 67.1 7.9 0.00027 28.0 4.7 50 105-156 64-113 (166)
72 2fbi_A Probable transcriptiona 67.0 8 0.00028 26.5 4.5 45 108-154 49-93 (142)
73 3bja_A Transcriptional regulat 66.8 6.8 0.00023 26.8 4.1 43 107-151 45-87 (139)
74 1ku3_A Sigma factor SIGA; heli 66.4 6.9 0.00024 24.4 3.7 29 106-136 27-55 (73)
75 1jgs_A Multiple antibiotic res 65.8 9.6 0.00033 26.1 4.8 45 107-153 46-90 (138)
76 2hr3_A Probable transcriptiona 65.4 9.3 0.00032 26.5 4.7 44 107-152 48-91 (147)
77 3f6o_A Probable transcriptiona 64.5 15 0.00051 25.1 5.5 39 107-147 29-67 (118)
78 1tty_A Sigma-A, RNA polymerase 64.0 7.7 0.00026 25.2 3.7 29 106-136 35-63 (87)
79 3eco_A MEPR; mutlidrug efflux 64.0 15 0.00051 25.2 5.5 45 108-154 46-90 (139)
80 3fm5_A Transcriptional regulat 63.9 6 0.0002 27.8 3.4 49 104-154 49-97 (150)
81 3t72_q RNA polymerase sigma fa 63.9 7.1 0.00024 26.6 3.6 29 107-137 37-65 (99)
82 1lj9_A Transcriptional regulat 63.8 11 0.00036 26.1 4.7 43 107-151 41-83 (144)
83 3cdh_A Transcriptional regulat 63.8 10 0.00035 26.6 4.7 44 106-151 54-97 (155)
84 2rdp_A Putative transcriptiona 63.7 11 0.00037 26.2 4.8 43 108-152 55-97 (150)
85 4aik_A Transcriptional regulat 63.7 13 0.00045 26.5 5.3 56 102-159 39-94 (151)
86 2f2e_A PA1607; transcription f 62.6 23 0.00078 25.3 6.4 42 107-150 35-76 (146)
87 2x4h_A Hypothetical protein SS 62.6 16 0.00054 25.3 5.4 61 87-155 11-71 (139)
88 1j5y_A Transcriptional regulat 61.2 18 0.00062 26.9 5.9 49 93-143 19-69 (187)
89 1tbx_A ORF F-93, hypothetical 60.9 20 0.00068 23.3 5.4 39 107-147 20-62 (99)
90 1y0u_A Arsenical resistance op 60.8 13 0.00045 24.3 4.5 36 108-145 42-77 (96)
91 2eth_A Transcriptional regulat 60.3 14 0.00047 26.0 4.8 42 108-151 57-98 (154)
92 3t5v_A Nuclear mRNA export pro 59.8 20 0.0007 29.5 6.3 61 72-132 177-247 (316)
93 2bv6_A MGRA, HTH-type transcri 59.7 12 0.00041 25.7 4.4 43 107-151 49-91 (142)
94 3f3x_A Transcriptional regulat 59.6 15 0.00051 25.4 4.9 45 111-157 52-96 (144)
95 3bro_A Transcriptional regulat 59.5 20 0.0007 24.4 5.5 41 109-151 50-90 (141)
96 2w48_A Sorbitol operon regulat 59.5 15 0.0005 29.8 5.4 53 95-149 7-59 (315)
97 3cjn_A Transcriptional regulat 59.0 13 0.00044 26.3 4.5 43 107-151 64-106 (162)
98 3hug_A RNA polymerase sigma fa 58.9 8.9 0.0003 25.1 3.3 26 109-136 53-78 (92)
99 1ku9_A Hypothetical protein MJ 58.6 20 0.00068 24.5 5.4 56 96-155 30-86 (152)
100 3s2w_A Transcriptional regulat 58.5 13 0.00044 26.3 4.4 46 107-154 62-107 (159)
101 2nyx_A Probable transcriptiona 57.9 13 0.00043 26.8 4.3 44 108-153 58-101 (168)
102 1tc3_C Protein (TC3 transposas 57.6 8.8 0.0003 21.1 2.8 22 110-132 22-43 (51)
103 3ech_A MEXR, multidrug resista 57.6 6.1 0.00021 27.5 2.4 45 107-153 49-93 (142)
104 3oop_A LIN2960 protein; protei 57.5 7.6 0.00026 26.9 3.0 42 108-151 50-91 (143)
105 2pex_A Transcriptional regulat 57.2 14 0.00048 25.8 4.4 43 107-151 59-101 (153)
106 1q1h_A TFE, transcription fact 56.9 8.7 0.0003 25.8 3.1 38 105-144 29-66 (110)
107 2fxa_A Protease production reg 56.5 8.8 0.0003 29.1 3.4 48 108-157 61-108 (207)
108 2jsc_A Transcriptional regulat 56.2 21 0.00071 24.4 5.1 38 108-147 33-70 (118)
109 1s3j_A YUSO protein; structura 56.0 13 0.00045 25.9 4.1 43 107-151 49-91 (155)
110 2qww_A Transcriptional regulat 56.0 9.5 0.00033 26.7 3.3 43 107-151 53-97 (154)
111 3f6v_A Possible transcriptiona 55.9 16 0.00055 26.5 4.6 40 107-148 69-108 (151)
112 4b8x_A SCO5413, possible MARR- 55.2 26 0.00088 24.7 5.6 58 96-156 39-96 (147)
113 1on2_A Transcriptional regulat 55.2 18 0.00062 25.1 4.7 50 101-155 14-63 (142)
114 3nqo_A MARR-family transcripti 55.0 25 0.00087 25.8 5.7 48 107-156 55-102 (189)
115 3nrv_A Putative transcriptiona 55.0 11 0.00038 26.2 3.5 44 107-152 52-95 (148)
116 3bj6_A Transcriptional regulat 55.0 14 0.00047 25.7 4.0 43 107-151 52-94 (152)
117 2o8x_A Probable RNA polymerase 54.1 13 0.00044 22.4 3.3 26 109-136 31-56 (70)
118 2qvo_A Uncharacterized protein 53.9 27 0.00092 22.7 5.1 35 106-142 27-61 (95)
119 2qlz_A Transcription factor PF 52.1 17 0.0006 28.5 4.5 45 106-155 175-219 (232)
120 1z05_A Transcriptional regulat 51.7 16 0.00055 30.8 4.5 50 93-144 37-86 (429)
121 2fa5_A Transcriptional regulat 51.3 12 0.0004 26.5 3.1 43 107-151 61-103 (162)
122 2lfw_A PHYR sigma-like domain; 50.7 12 0.00042 26.7 3.2 27 108-136 108-134 (157)
123 2wte_A CSA3; antiviral protein 50.3 24 0.00082 27.8 5.1 63 107-173 164-230 (244)
124 3boq_A Transcriptional regulat 49.8 14 0.00047 26.0 3.3 45 106-152 59-103 (160)
125 3g3z_A NMB1585, transcriptiona 48.5 9.6 0.00033 26.5 2.2 41 109-151 45-85 (145)
126 2jpc_A SSRB; DNA binding prote 48.5 18 0.00061 21.3 3.2 22 110-132 14-35 (61)
127 3u2r_A Regulatory protein MARR 48.1 23 0.00079 25.2 4.4 49 107-157 60-108 (168)
128 2p5k_A Arginine repressor; DNA 48.1 40 0.0014 19.8 5.2 42 95-141 5-51 (64)
129 2frh_A SARA, staphylococcal ac 48.0 8.3 0.00028 26.7 1.8 49 107-157 51-99 (127)
130 1r1t_A Transcriptional repress 47.9 44 0.0015 23.0 5.7 37 108-146 58-94 (122)
131 3mzy_A RNA polymerase sigma-H 46.8 17 0.00058 25.3 3.4 27 108-136 123-149 (164)
132 3kor_A Possible Trp repressor; 46.5 34 0.0011 24.3 4.8 37 98-139 66-102 (119)
133 3e6m_A MARR family transcripti 45.6 14 0.00047 26.3 2.7 43 108-152 66-108 (161)
134 1z91_A Organic hydroperoxide r 44.6 13 0.00044 25.7 2.4 41 108-150 53-93 (147)
135 2dk5_A DNA-directed RNA polyme 44.3 32 0.0011 22.8 4.3 49 106-156 33-83 (91)
136 3szt_A QCSR, quorum-sensing co 43.8 24 0.00082 27.2 4.1 23 109-132 190-212 (237)
137 1r7j_A Conserved hypothetical 43.7 68 0.0023 21.2 6.1 42 99-144 12-53 (95)
138 1je8_A Nitrate/nitrite respons 43.6 23 0.00077 22.6 3.3 26 109-136 36-61 (82)
139 1eij_A Hypothetical protein MT 43.4 8.4 0.00029 25.6 1.1 22 125-147 37-58 (80)
140 3ulq_B Transcriptional regulat 42.8 31 0.001 22.6 4.0 25 109-135 44-68 (90)
141 1or7_A Sigma-24, RNA polymeras 42.7 21 0.00072 25.8 3.4 27 108-136 155-181 (194)
142 1l3l_A Transcriptional activat 42.4 31 0.0011 26.2 4.6 23 109-132 188-210 (234)
143 2k6x_A Sigma-A, RNA polymerase 42.4 18 0.00062 23.0 2.6 38 100-139 14-56 (72)
144 3b73_A PHIH1 repressor-like pr 42.3 16 0.00055 25.4 2.6 38 105-144 23-62 (111)
145 2xvc_A ESCRT-III, SSO0910; cel 42.2 37 0.0013 21.1 3.8 36 105-142 21-56 (59)
146 3c57_A Two component transcrip 42.2 24 0.00083 23.2 3.4 26 109-136 42-67 (95)
147 3hrs_A Metalloregulator SCAR; 42.1 39 0.0013 25.7 5.0 52 99-155 10-61 (214)
148 1z6r_A MLC protein; transcript 41.7 38 0.0013 28.0 5.3 44 98-143 19-62 (406)
149 2gqq_A Leucine-responsive regu 41.5 7.3 0.00025 28.4 0.7 70 105-176 23-98 (163)
150 1xmk_A Double-stranded RNA-spe 41.1 19 0.00064 23.6 2.6 38 104-143 20-58 (79)
151 1v4r_A Transcriptional repress 41.1 43 0.0015 22.0 4.6 52 91-144 16-68 (102)
152 1okr_A MECI, methicillin resis 40.7 57 0.002 21.7 5.3 38 107-146 22-63 (123)
153 2q0o_A Probable transcriptiona 40.7 32 0.0011 26.2 4.4 23 109-132 190-212 (236)
154 2fh0_A Hypothetical 16.0 kDa p 40.6 9.1 0.00031 25.5 1.0 22 125-147 35-56 (81)
155 1x3u_A Transcriptional regulat 40.5 29 0.00099 21.4 3.4 27 108-136 30-56 (79)
156 2x48_A CAG38821; archeal virus 40.4 22 0.00077 20.4 2.7 21 110-131 32-52 (55)
157 2rnj_A Response regulator prot 40.2 24 0.00081 22.9 3.1 26 109-136 44-69 (91)
158 2fu4_A Ferric uptake regulatio 39.5 68 0.0023 19.9 6.0 36 108-145 32-72 (83)
159 1fse_A GERE; helix-turn-helix 39.0 48 0.0017 19.9 4.3 22 110-132 27-48 (74)
160 2lkp_A Transcriptional regulat 38.4 49 0.0017 22.1 4.6 36 108-145 44-79 (119)
161 1mkm_A ICLR transcriptional re 37.7 37 0.0012 26.3 4.3 52 98-154 11-63 (249)
162 2b0l_A GTP-sensing transcripti 37.5 88 0.003 20.9 5.8 41 102-144 35-76 (102)
163 3r4k_A Transcriptional regulat 37.0 42 0.0014 26.3 4.6 56 96-155 7-63 (260)
164 3kp7_A Transcriptional regulat 37.0 17 0.00058 25.4 2.0 45 106-152 48-94 (151)
165 1p4w_A RCSB; solution structur 36.9 32 0.0011 23.1 3.3 23 109-132 49-71 (99)
166 1xsv_A Hypothetical UPF0122 pr 35.9 35 0.0012 23.4 3.5 26 109-136 41-66 (113)
167 3k2z_A LEXA repressor; winged 35.7 64 0.0022 23.9 5.3 38 105-144 20-57 (196)
168 1bia_A BIRA bifunctional prote 34.6 48 0.0016 26.9 4.7 43 98-142 8-50 (321)
169 2p4w_A Transcriptional regulat 33.7 60 0.0021 24.6 4.9 38 108-147 27-64 (202)
170 2xrn_A HTH-type transcriptiona 33.5 47 0.0016 25.6 4.3 54 97-154 8-62 (241)
171 2o0y_A Transcriptional regulat 33.5 63 0.0022 25.1 5.1 46 96-143 24-70 (260)
172 1s7o_A Hypothetical UPF0122 pr 33.1 39 0.0013 23.2 3.4 26 109-136 38-63 (113)
173 3dp7_A SAM-dependent methyltra 33.1 55 0.0019 26.6 4.9 45 107-157 48-92 (363)
174 1jko_C HIN recombinase, DNA-in 33.0 34 0.0012 18.8 2.6 21 110-131 22-42 (52)
175 4ham_A LMO2241 protein; struct 32.9 1.2E+02 0.0041 20.9 9.3 79 91-174 19-98 (134)
176 1ldj_A Cullin homolog 1, CUL-1 32.6 49 0.0017 30.4 4.8 41 100-142 594-634 (760)
177 1k8b_A EIF-2-beta, probable tr 31.4 86 0.0029 18.7 4.6 38 111-155 13-50 (52)
178 2g7u_A Transcriptional regulat 31.2 72 0.0025 24.7 5.1 54 96-155 15-69 (257)
179 3k9t_A Putative peptidase; str 30.3 53 0.0018 28.4 4.4 46 94-143 389-434 (435)
180 3lst_A CALO1 methyltransferase 29.5 1.2E+02 0.0042 24.2 6.4 59 92-157 39-97 (348)
181 3lmm_A Uncharacterized protein 29.5 53 0.0018 29.2 4.4 53 97-155 432-489 (583)
182 2ia2_A Putative transcriptiona 29.4 67 0.0023 25.1 4.6 54 96-155 22-76 (265)
183 2cru_A Programmed cell death p 28.9 18 0.00061 25.7 1.0 22 125-147 67-88 (118)
184 3gva_A Alkyltransferase-like p 28.8 46 0.0016 23.4 3.1 25 98-122 11-35 (116)
185 1rp3_A RNA polymerase sigma fa 28.2 48 0.0017 24.5 3.4 27 108-136 202-228 (239)
186 2h09_A Transcriptional regulat 27.9 65 0.0022 22.5 4.0 44 107-155 52-95 (155)
187 1hsj_A Fusion protein consisti 27.8 71 0.0024 26.7 4.8 51 108-160 419-469 (487)
188 2hvu_A PDCD5-like protein; YMR 27.2 19 0.00065 25.5 0.8 22 125-147 70-91 (116)
189 3gwz_A MMCR; methyltransferase 27.2 1.1E+02 0.0039 24.7 5.8 61 94-160 57-118 (369)
190 2obp_A Putative DNA-binding pr 27.0 1.4E+02 0.0049 19.9 8.5 63 87-151 14-76 (96)
191 3by6_A Predicted transcription 26.5 1.6E+02 0.0054 20.2 6.7 50 92-143 17-67 (126)
192 2jxn_A Uncharacterized protein 25.9 22 0.00075 25.6 1.0 22 125-147 70-91 (127)
193 3f2g_A Alkylmercury lyase; MER 25.6 64 0.0022 25.2 3.7 39 105-150 32-70 (220)
194 2kif_A O6-methylguanine-DNA me 25.5 45 0.0015 23.1 2.6 25 98-122 9-33 (108)
195 4a6d_A Hydroxyindole O-methylt 25.4 95 0.0033 25.1 5.0 56 98-155 31-87 (353)
196 2zkz_A Transcriptional repress 25.3 56 0.0019 21.4 3.0 36 108-146 40-75 (99)
197 2oa4_A SIR5; structure, struct 25.2 51 0.0017 22.6 2.7 41 97-141 39-79 (101)
198 2q1z_A RPOE, ECF SIGE; ECF sig 25.0 20 0.00067 25.8 0.6 27 108-136 150-176 (184)
199 3jw4_A Transcriptional regulat 25.0 22 0.00076 24.6 0.9 44 108-153 56-99 (148)
200 2hng_A Hypothetical protein; a 24.9 19 0.00066 25.8 0.5 35 140-174 68-102 (127)
201 3dpl_C Cullin-5; ubiquitin, NE 24.8 57 0.002 27.3 3.6 24 108-132 214-237 (382)
202 2o2a_A Hypothetical protein GB 24.8 19 0.00066 25.9 0.5 35 140-174 67-101 (128)
203 2k9l_A RNA polymerase sigma fa 24.5 56 0.0019 20.8 2.7 21 109-130 48-68 (76)
204 3i53_A O-methyltransferase; CO 24.1 1.2E+02 0.0042 23.9 5.4 58 95-158 25-82 (332)
205 3mcz_A O-methyltransferase; ad 23.8 1.2E+02 0.004 24.1 5.2 41 109-155 56-96 (352)
206 3mq0_A Transcriptional repress 23.5 65 0.0022 25.4 3.5 54 96-154 31-85 (275)
207 1x2m_A LAG1 longevity assuranc 23.4 56 0.0019 20.4 2.5 20 112-132 31-50 (64)
208 2vxz_A Pyrsv_GP04; viral prote 23.2 1.1E+02 0.0038 22.7 4.4 44 93-142 12-55 (165)
209 3clo_A Transcriptional regulat 22.9 65 0.0022 24.9 3.4 27 108-136 211-237 (258)
210 2ek5_A Predicted transcription 22.7 1.9E+02 0.0066 19.9 6.9 49 93-143 11-60 (129)
211 3iuo_A ATP-dependent DNA helic 22.5 86 0.0029 21.7 3.6 30 108-139 31-60 (122)
212 2e9h_A EIF-5, eukaryotic trans 22.4 2.4E+02 0.008 20.8 6.6 54 111-173 45-98 (157)
213 3tqn_A Transcriptional regulat 22.3 1.8E+02 0.0062 19.4 6.7 50 93-144 16-66 (113)
214 2jrt_A Uncharacterized protein 22.1 74 0.0025 21.3 3.1 25 107-132 47-71 (95)
215 1x19_A CRTF-related protein; m 22.0 1.6E+02 0.0055 23.5 5.7 43 108-156 63-105 (359)
216 2fbk_A Transcriptional regulat 21.5 45 0.0015 24.0 2.0 41 109-151 86-126 (181)
217 3c7j_A Transcriptional regulat 21.3 2.7E+02 0.0093 21.1 6.7 52 91-144 31-82 (237)
218 2r3s_A Uncharacterized protein 21.1 1.3E+02 0.0046 23.4 5.0 44 108-157 38-81 (335)
219 4a0z_A Transcription factor FA 20.9 73 0.0025 24.0 3.1 35 92-127 9-43 (190)
220 3cta_A Riboflavin kinase; stru 20.5 2.6E+02 0.0087 20.9 6.4 48 106-155 24-71 (230)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=3.2e-50 Score=313.58 Aligned_cols=168 Identities=79% Similarity=1.223 Sum_probs=157.5
Q ss_pred chhHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCceehhhhhcchhhhhccCCCchHHHHHHHHHhcCChhhHhhhh
Q 030471 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA 81 (177)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~~~~~~l~~LL~if~~G~~~~~~~~~ 81 (177)
++++++.+.|++|+.+++++++++|.+++.+||.+|++|+||||+.+|+|++|++++++|+++||++|++||+++|.+++
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~ 81 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA 81 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH
Confidence 47899999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 030471 82 GHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (177)
Q Consensus 82 ~~~~~L~~~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R~ 161 (177)
+.+|.|++.+.+|||+|||++||..++++||++|+++|+++|.++||.|||++||+.|||+|+|||++++|+|+|++||+
T Consensus 82 ~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 82 TRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 88999999999999999999999999999999999999999899999999977999999999999999999999999999
Q ss_pred CCcchHHH
Q 030471 162 LRPGQLGS 169 (177)
Q Consensus 162 ~~~~~~~~ 169 (177)
|+++||..
T Consensus 162 l~~~qi~~ 169 (169)
T 3chm_A 162 LRPGQLGN 169 (169)
T ss_dssp CCC-----
T ss_pred cCHHhccC
Confidence 99999963
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-34 Score=245.76 Aligned_cols=153 Identities=14% Similarity=0.329 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHhcCCCceehhhhhcchhhhhccC-CCchHHHHHHHHHhcCChhhHhhh----hCCCCCCch---HHHHH
Q 030471 23 GAALGSVIVEATSQPSLFAFSEILAVPNIAEFEG-TENSKYLDMLRLFAHGTWSDYKNN----AGHLPQLVP---DQVLK 94 (177)
Q Consensus 23 ~~~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~-~~~~~l~~LL~if~~G~~~~~~~~----~~~~~~L~~---~~~~K 94 (177)
...|+.+++.||.+|++|+||+|+.+|.+++|++ +++.|+++||++|+.||+.+|.+. .+..|.+.. ...+|
T Consensus 211 ~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~k 290 (393)
T 4b4t_O 211 QQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQK 290 (393)
T ss_dssp HHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHH
Confidence 4579999999999999999999999999999975 578999999999999999999874 344565653 34789
Q ss_pred HHHHHhhcccc--CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCcchHHHHHH
Q 030471 95 LKQLTVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (177)
Q Consensus 95 lr~LtllsL~~--~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R~~~~~~~~~L~~ 172 (177)
+|.+++++++. ..+.|||++|++.|+++ .++||.||| +||+.|+|+|+|||++|+|+|+|++||+|+++||+.|.+
T Consensus 291 irll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~ 368 (393)
T 4b4t_O 291 ICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKD 368 (393)
T ss_dssp HHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC------------------
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHH
Confidence 99999999875 57899999999999998 999999999 999999999999999999999999999999999999999
Q ss_pred HhccC
Q 030471 173 TLSNW 177 (177)
Q Consensus 173 ~L~~W 177 (177)
+|..|
T Consensus 369 ~L~~W 373 (393)
T 4b4t_O 369 RLVEW 373 (393)
T ss_dssp -----
T ss_pred HHHHH
Confidence 99999
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.39 E-value=1.6e-12 Score=112.72 Aligned_cols=136 Identities=10% Similarity=0.097 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCCCceehhhhhcchhhhhccCCCchHHHHHHHHHhcCChhhHhhhh----CCCCC---Cc---hHHHH
Q 030471 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA----GHLPQ---LV---PDQVL 93 (177)
Q Consensus 24 ~~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~~~~~~l~~LL~if~~G~~~~~~~~~----~~~~~---L~---~~~~~ 93 (177)
+.+.-++..+|..-+++.+..++..|......+++..|+.+++..|..|++..|.+.- ..+.. +. ....+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4567788899999999999999988876655555678999999999999999998742 22221 11 23467
Q ss_pred HHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 030471 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (177)
Q Consensus 94 Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R~ 161 (177)
++|...+..+.+..+.|+++.||+.++++ .++||.+++ ++|..|.|.|+|||++|+|+++...+|.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~~giv~~~~~~~r~ 366 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQGEGVLIVFEETPVD 366 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCC----
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCCCCEEEECCCcchh
Confidence 88899999999999999999999999997 999999999 9999999999999999999998876665
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.6e-08 Score=86.56 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCCceehh-hhhcchhhhhc-cCC-CchHHHHHHHHHhcCChhhHhhh-----hCCC---CCCc---h
Q 030471 24 AALGSVIVEATSQPSLFAFS-EILAVPNIAEF-EGT-ENSKYLDMLRLFAHGTWSDYKNN-----AGHL---PQLV---P 89 (177)
Q Consensus 24 ~~a~~~i~~aL~~p~i~~f~-eLl~~~~v~~L-~~~-~~~~l~~LL~if~~G~~~~~~~~-----~~~~---~~L~---~ 89 (177)
..+.-++..++..++.-++. .++..|.+... ... ...++.+++..|..+.+..|... ...+ +-+. .
T Consensus 248 ~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~ 327 (429)
T 4b4t_R 248 SIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHAD 327 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHH
Confidence 45677777777777665533 35666666543 322 24567788998989998886542 1111 1132 4
Q ss_pred HHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCcchH
Q 030471 90 DQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQL 167 (177)
Q Consensus 90 ~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R~~~~~~~ 167 (177)
...+.+|...+..+++..+.|+++.+|+.++++ .+++|.++. +.|..|-|.|+||+++|+|+.++..+|.-.=++|
T Consensus 328 ~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~ 403 (429)
T 4b4t_R 328 FFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLL 403 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECC-----------
T ss_pred HHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHH
Confidence 567899999999999999999999999999998 999999999 9999999999999999999998887776443333
No 5
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.75 E-value=4.5e-09 Score=83.34 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChhhHhhhhCCCCC-C----chHHHHHHHHHHhhcccc------CCcccChHHHHHHcCCC-----Ch
Q 030471 61 KYLDMLRLFAHGTWSDYKNNAGHLPQ-L----VPDQVLKLKQLTVLTLAE------TNKVLPYDELMEELDVT-----NV 124 (177)
Q Consensus 61 ~l~~LL~if~~G~~~~~~~~~~~~~~-L----~~~~~~Klr~LtllsL~~------~~~~is~~~I~~~l~i~-----~~ 124 (177)
.+.++..++..||+..|++.-..... + .-..+.|+|.+.+-.+.. ....|++++|+.++++. +.
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~ 161 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDI 161 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCH
Confidence 57789999999999999874221111 1 112356777776666654 57799999999999652 48
Q ss_pred HHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 125 RELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 125 ~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
+|||.+|. ++|..|.|+|+||+.++++.++..
T Consensus 162 ~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 162 DEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHH-HHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHH-HHHHcCceEEEEcccccEEEECCC
Confidence 99999999 999999999999999999988754
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=2.5e-08 Score=87.24 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCCceehhhhhcchhhhhccCCCchHHHHHHHHHhcCChhhHhhh----hCCC---CCC------c---
Q 030471 25 ALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNN----AGHL---PQL------V--- 88 (177)
Q Consensus 25 ~a~~~i~~aL~~p~i~~f~eLl~~~~v~~L~~~~~~~l~~LL~if~~G~~~~~~~~----~~~~---~~L------~--- 88 (177)
+...++...+.+|..-....++.-+... -+..+.+.+..++.+|..+++..|... ...+ +.. .
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 338 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHW 338 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 3456677788888777677777543321 111235678899999999999887652 2211 111 1
Q ss_pred hHHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecC
Q 030471 89 PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAG 159 (177)
Q Consensus 89 ~~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~ 159 (177)
....+.++...+..+++..+.|+++.|++.++++ .++||.++. ++|..|.|.|+|||++|.|++.+..+
T Consensus 339 ~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i~akIDq~~giV~F~~~~~ 407 (445)
T 4b4t_P 339 EDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGIIYAKVNRPAKIVNFEKPKN 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCEEETTTTEEEC-----
T ss_pred HHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEEEcCCCCEEEECCCCC
Confidence 2345667778888888899999999999999998 999999999 99999999999999999988765433
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.47 E-value=3.5e-07 Score=62.83 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=54.2
Q ss_pred HHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecC
Q 030471 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAG 159 (177)
Q Consensus 94 Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~ 159 (177)
++..-.|..+++....|+++.+|+.++++ .++||.++. ++|..|-+.|+|||++++|.+....+
T Consensus 15 ~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 33344444566789999999999999998 999999999 99999999999999999998765433
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.6e-07 Score=75.63 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=78.9
Q ss_pred chHHHHHHHHHhcCChhhHhhhhCCC----CC---Cc---hHHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHH
Q 030471 59 NSKYLDMLRLFAHGTWSDYKNNAGHL----PQ---LV---PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELE 128 (177)
Q Consensus 59 ~~~l~~LL~if~~G~~~~~~~~~~~~----~~---L~---~~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE 128 (177)
..++..+...|..+++..|......+ .. +. ....+.++...+..++...+.++++.|++.++++ .+++|
T Consensus 296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E 374 (434)
T 4b4t_Q 296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE 374 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence 46788899999999999988743211 11 11 2334677778888888899999999999999997 99999
Q ss_pred HHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 030471 129 DFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (177)
Q Consensus 129 ~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R~ 161 (177)
.++. ++|..|.|.|+|||++|+|.+.....|.
T Consensus 375 ~~l~-~lI~~~~i~a~id~~~g~v~~~~~~~~~ 406 (434)
T 4b4t_Q 375 GKLS-QMILDKIFYGVLDQGNGWLYVYETPNQD 406 (434)
T ss_dssp HHHH-HHHHHTSSCCEEETTTTEEECC------
T ss_pred HHHH-HHHhCCCcceecccccCeEeeCCCcchh
Confidence 9999 9999999999999999999987655554
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.1e-06 Score=76.56 Aligned_cols=94 Identities=12% Similarity=0.237 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCChhhHhhhh----CCCC-CCchHHHHHHHH----HHhhccccCCcccChHHHHHHcCCCChHHHHHH
Q 030471 60 SKYLDMLRLFAHGTWSDYKNNA----GHLP-QLVPDQVLKLKQ----LTVLTLAETNKVLPYDELMEELDVTNVRELEDF 130 (177)
Q Consensus 60 ~~l~~LL~if~~G~~~~~~~~~----~~~~-~L~~~~~~Klr~----LtllsL~~~~~~is~~~I~~~l~i~~~~evE~l 130 (177)
.++++|..+|..||+..|.+.- ..+. .=+-..+.++|. -.+..+......||+.+|+..++++|.+++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 4688999999999999998732 1111 101112233332 233344445778999999999999877899999
Q ss_pred HHHHhHhcCccEEEecCCCCEEEE
Q 030471 131 LINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 131 vI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
|- +||..|.|+|+||+.+|.|..
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEEC
T ss_pred HH-HHHHcCCceEEEecCCCEEEe
Confidence 99 999999999999999997754
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.97 E-value=6.7e-06 Score=72.36 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCChhhHhhhhCC----CC-C-CchHHHHHHHHHHhhcc----------ccCCcccChHHHHHHcCC----
Q 030471 62 YLDMLRLFAHGTWSDYKNNAGH----LP-Q-LVPDQVLKLKQLTVLTL----------AETNKVLPYDELMEELDV---- 121 (177)
Q Consensus 62 l~~LL~if~~G~~~~~~~~~~~----~~-~-L~~~~~~Klr~LtllsL----------~~~~~~is~~~I~~~l~i---- 121 (177)
+..|..++..||+..|.+.-.. +. . +--..+.|+|.+.+-.+ ..+...|+++.|+.++++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 6789999999999999974221 11 1 11233456666533222 223478999999999984
Q ss_pred ----------------CChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 122 ----------------TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 122 ----------------~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
.+.++||.+|. ++|+.|+|+|+||..++++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 14789999999 999999999999999999998865
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=94.91 E-value=0.043 Score=43.61 Aligned_cols=74 Identities=9% Similarity=0.059 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhhHhhhhCCCCCC-----chHHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHH
Q 030471 60 SKYLDMLRLFAHGTWSDYKNNAGHLPQL-----VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINE 134 (177)
Q Consensus 60 ~~l~~LL~if~~G~~~~~~~~~~~~~~L-----~~~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ 134 (177)
...+++-..+..|++..|.+.....|.- .+-.+.++|.-.+-+++.....||.+++++.|+++|.++++.++- +
T Consensus 136 ~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 136 EWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 3567888999999999988765555532 234567888877777877778999999999999998999999987 6
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.90 E-value=0.036 Score=36.54 Aligned_cols=55 Identities=11% Similarity=0.252 Sum_probs=46.5
Q ss_pred hhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 030471 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (177)
Q Consensus 100 llsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~ 156 (177)
++...+.++.++.+++|.++++. ..++-+-+- +....|.+.|-||...+-|+|+.
T Consensus 12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEecH
Confidence 34555678999999999999998 777767777 88899999999999988888863
No 13
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.90 E-value=0.48 Score=31.06 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 030471 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (177)
Q Consensus 96 r~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkI 145 (177)
+.|.++.-...+..+|..+||+.|+++ ...|...+= +....|+|.+.-
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 344444433345689999999999998 899999888 888999998874
No 14
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=87.81 E-value=1 Score=33.56 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 87 L~~~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
++....--+|.|..++...+++.+|-++||+.+++| ..-|+.++- +.-.+|+|..+ -..+|-+...
T Consensus 22 lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~La 87 (159)
T 3lwf_A 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSI-RGAHGGYVLN 87 (159)
T ss_dssp CCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-CSTTCEEEEC
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEe-cCCCCceEec
Confidence 443333345555555544456689999999999998 999999988 88999999866 3444554443
No 15
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=87.61 E-value=0.85 Score=33.21 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=42.2
Q ss_pred HHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 95 lr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
+|.|..+....+++.+|-++||+.+++| ..-|+.++- +.-.+|+|..+ -..+|-+...
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~La 71 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV-RGAKGGYQLR 71 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC-SSSSSEEEES
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec-CCCCCCeeec
Confidence 3444444433345679999999999998 999999988 88999998864 4445555443
No 16
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=87.60 E-value=2.3 Score=28.92 Aligned_cols=52 Identities=13% Similarity=-0.023 Sum_probs=41.0
Q ss_pred CcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCC
Q 030471 107 NKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGR 160 (177)
Q Consensus 107 ~~~is~~~I~~~l-~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R 160 (177)
.+..++.+|++.+ +++ ...+=..+= +....|+|+.+.+..++.......+++
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 4579999999999 997 888887777 889999999999887665544444443
No 17
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=87.47 E-value=1.8 Score=28.66 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=39.7
Q ss_pred HHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 96 r~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
+.|.++.-...+..++..+||+.|+++ ...|...+- +.-..|+|.-. ....+.-.+
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i 69 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEE
Confidence 334444422345689999999999998 899999988 88899998643 333344443
No 18
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.03 E-value=0.48 Score=33.72 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=31.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
.+..+|+.+||+.++++ ...|-..+= +....|+|++.
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 51 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGY 51 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEecc
Confidence 34568999999999997 888887777 88889999765
No 19
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=86.81 E-value=1.8 Score=31.20 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=36.2
Q ss_pred hccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 030471 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (177)
Q Consensus 101 lsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk---IDq~ 148 (177)
+.+...+..+|+.+||+.++++ ...|-..+= +....|+|.+. +|..
T Consensus 15 l~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 15 VKILSENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEecCChH
Confidence 3333445679999999999997 899988888 88999999864 5553
No 20
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=86.68 E-value=1.2 Score=32.66 Aligned_cols=38 Identities=26% Similarity=0.180 Sum_probs=32.5
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
..+..+|+.+||+.++++ ...|-..+- +....|+|++.
T Consensus 20 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 57 (162)
T 2p5v_A 20 QENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQY 57 (162)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeee
Confidence 445569999999999997 899988888 89999999863
No 21
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.87 E-value=1.6 Score=31.49 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=36.8
Q ss_pred hccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 030471 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (177)
Q Consensus 101 lsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g---kIDq~ 148 (177)
+.+...+..+|+.+||+.++++ ...|-..+= +....|+|++ .+|..
T Consensus 14 l~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 14 LEALMGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 3333445679999999999997 899988888 8899999986 46654
No 22
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=85.83 E-value=1.3 Score=33.10 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=47.2
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCCC--C-EEEEEe-ecC---CCCCcchHHHHHHHh
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQLR--R-CFEVQF-AAG---RDLRPGQLGSMIQTL 174 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk---IDq~~--~-~v~v~~-~~~---R~~~~~~~~~L~~~L 174 (177)
..+..+|+.+||+.++++ ...|-..+- +....|+|++. +|... . +..|.. +.+ |.|+.+..+.+.+.+
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~~~~~~f~~~~~~~~~~~l 104 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFLERYISYISSTL 104 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTTTSCSEEEEEEEEESCC--CHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHHHhhcceEEEEEEECCccccccchhHHHHHHHHH
Confidence 345579999999999997 899988888 89999999764 55432 1 334332 222 234444667776666
Q ss_pred cc
Q 030471 175 SN 176 (177)
Q Consensus 175 ~~ 176 (177)
..
T Consensus 105 ~~ 106 (171)
T 2ia0_A 105 SA 106 (171)
T ss_dssp HT
T ss_pred HC
Confidence 54
No 23
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=85.36 E-value=1.1 Score=32.21 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=34.8
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk---IDq~ 148 (177)
..+..+|+.+||+.++++ ...|-..+= +....|+|++. +|..
T Consensus 15 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 15 KKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 445679999999999997 899988888 89999999864 5554
No 24
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.91 E-value=2.8 Score=27.43 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=34.0
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
..++.++..+|++.++++ ...|-..+= .....|+|...-+
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~ 73 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRD 73 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEEC
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEec
Confidence 446689999999999997 888988877 8889999987755
No 25
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=84.14 E-value=3 Score=29.19 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 94 Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
-++.|..+.-..+++.+|-.+||+.+++| ...|+..+- ..-..|+|...
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 34444444333346789999999999998 999999888 88899998754
No 26
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=83.69 E-value=3 Score=29.81 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=47.4
Q ss_pred hhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCCC--CE--EEEEeecCCCCCcchHHHHHH
Q 030471 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQLR--RC--FEVQFAAGRDLRPGQLGSMIQ 172 (177)
Q Consensus 100 llsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g---kIDq~~--~~--v~v~~~~~R~~~~~~~~~L~~ 172 (177)
|+.+...+..+|+.+||+.++++ ...|-..+= +....|+|++ .+|... .. ..+....+ -.+...+.+.+
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~--~~~~~~~~~~~ 83 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINPASLNLDYIVITSVKAK--YGKNYHVELGN 83 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC--CCTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCHHHhCCceEEEEEEEec--CChhHHHHHHH
Confidence 34443556679999999999997 889988888 8999999987 466532 22 23322211 01345666666
Q ss_pred Hhcc
Q 030471 173 TLSN 176 (177)
Q Consensus 173 ~L~~ 176 (177)
.+..
T Consensus 84 ~l~~ 87 (150)
T 2pn6_A 84 KLAQ 87 (150)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 6544
No 27
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.61 E-value=1.3 Score=29.15 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=35.2
Q ss_pred HhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 030471 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (177)
Q Consensus 99 tllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~ 142 (177)
.|+.+....+.++.++||+.++++ ...|..-+- +....|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 455555678899999999999997 999998888 888889774
No 28
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.93 E-value=3.3 Score=26.62 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=31.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
.+.++..+||+.++++ ...|-..+- .....|+|...
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 4569999999999997 899998888 88899999854
No 29
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=81.95 E-value=1.1 Score=33.50 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=32.5
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
..+..+|+.+||+.++++ ...|-..+= +....|+|++.
T Consensus 37 ~~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~~ 74 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKF 74 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCC
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEee
Confidence 445679999999999997 889988888 88999999763
No 30
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.95 E-value=2.6 Score=28.20 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 93 ~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
.+.+.|.++. . +. +|+.+||+.++++ ...|-..+- +.-..|+|.-
T Consensus 18 ~~~~IL~lL~--~-~g-~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIG--I-EG-ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHS--S-ST-EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHHH--H-cC-CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 3555566655 3 33 9999999999998 899998888 8779999876
No 31
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=81.70 E-value=5.4 Score=29.16 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=37.5
Q ss_pred hhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 030471 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (177)
Q Consensus 100 llsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g---kIDq~ 148 (177)
|+.+.+.+..+|+.+||+.++++ ...|-.-+= +....|+|++ .+|..
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHH
Confidence 44444667788999999999997 899988887 8889999885 45653
No 32
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=81.21 E-value=2.3 Score=30.93 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 95 lr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
+|.|..+.. ..++.++-++||+.+++| ...|+.++- +.-..|+|...
T Consensus 17 l~~L~~La~-~~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~ 63 (149)
T 1ylf_A 17 VHILSILKN-NPSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHH-SCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHh-CCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEc
Confidence 444444443 245689999999999998 999999998 89999998864
No 33
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=81.10 E-value=3.4 Score=27.14 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=35.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..+= +....|+|...-+. ++.
T Consensus 32 ~~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~-~~r 73 (109)
T 1sfx_A 32 RGGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE-KGW 73 (109)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE-SSS
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec-CCc
Confidence 3469999999999997 899998888 89999999988776 443
No 34
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=80.78 E-value=1.3 Score=32.03 Aligned_cols=42 Identities=7% Similarity=0.206 Sum_probs=33.7
Q ss_pred hccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 101 lsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
+.+...+..+|+.+||+.++++ ...|-..+= +....|+|++.
T Consensus 13 l~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 54 (151)
T 2cyy_A 13 IKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKF 54 (151)
T ss_dssp HHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCCC
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 3333445679999999999997 889988887 88899999763
No 35
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=79.68 E-value=1.5 Score=29.67 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=36.7
Q ss_pred HhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 99 tllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
.|+.+....+.++..+||+.++++ ...|...+- +....|+|.-.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345555678899999999999997 999999888 89999987754
No 36
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=79.49 E-value=5.9 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=32.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq 147 (177)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+.
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeC
Confidence 689999999999997 888887777 78889999987554
No 37
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=79.42 E-value=3.1 Score=30.86 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 95 lr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
+|.|..+... .++.+|-++||+.++++ ..-|+..+- +.-.+|+|+.. -..+|-...
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~L 70 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT-VGKNGGYQL 70 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE-CSTTCEEEC
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee-cCCCCCeEe
Confidence 4444444432 35679999999999998 999999988 88999999754 334444443
No 38
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=79.26 E-value=3.4 Score=25.94 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 96 r~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
+.|.++. ..++.+|..+||+.++++ ...|...+= ..-..|+|..
T Consensus 14 ~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 14 KILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 3444442 345679999999999998 899998876 7777888754
No 39
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=79.02 E-value=4.5 Score=26.54 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=34.9
Q ss_pred cccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 030471 103 LAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (177)
Q Consensus 103 L~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~ 149 (177)
+...+..++..+|++.++++ ...|-..+= .....|+|...-+...
T Consensus 30 l~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 30 MVEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC---
T ss_pred HHHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeccccC
Confidence 33335679999999999997 889988877 8899999998766433
No 40
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=78.53 E-value=3.4 Score=29.81 Aligned_cols=33 Identities=3% Similarity=0.075 Sum_probs=30.2
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 030471 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (177)
Q Consensus 111 s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkI 145 (177)
|-++||+.+++| ..-++.++- +.-.+|+|...=
T Consensus 25 s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~r 57 (145)
T 1xd7_A 25 SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSRA 57 (145)
T ss_dssp CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECCS
T ss_pred CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEeec
Confidence 999999999998 999999999 999999997653
No 41
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=78.35 E-value=1.7 Score=28.55 Aligned_cols=35 Identities=6% Similarity=0.206 Sum_probs=30.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
+...|..|||++++++ ...|..-+- ..-..|+|.-
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~R 56 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLEK 56 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 5889999999999996 888998888 8888888854
No 42
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=78.20 E-value=6.8 Score=27.33 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=36.3
Q ss_pred ccccCCcc-cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 030471 102 TLAETNKV-LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (177)
Q Consensus 102 sL~~~~~~-is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~ 148 (177)
.|...++. +|-.+|++.++++ ...|-..+= .....|+|...-+..
T Consensus 34 ~L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~ 79 (123)
T 3r0a_A 34 SFLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNL 79 (123)
T ss_dssp HHHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEC
T ss_pred HHHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCcc
Confidence 34455555 9999999999997 899998887 889999998875543
No 43
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.09 E-value=3 Score=27.26 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=33.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq 147 (177)
++.+++.+|++.++++ ...|-..+= +....|+|...-+.
T Consensus 28 ~~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 3479999999999997 888888777 88899999977644
No 44
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=76.41 E-value=6.3 Score=27.01 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=37.3
Q ss_pred HHHHHHhhccccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 94 Klr~LtllsL~~~~~~is~~~I~~~l-~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
|-|..-|..|..+...++|.+|++.+ +++ ...+=.-+= ..-..|+|+-+.+
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~ 78 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG 78 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec
Confidence 44444444454444446699999999 897 777777766 7888999999888
No 45
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.73 E-value=7.8 Score=31.30 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=66.4
Q ss_pred ceehh-hhhcchhh-hhccCCC-chHHHHHHHHHhcCChhhHhhhh--CCCCC-----CchHHHHHHHHHHhhccccCCc
Q 030471 39 LFAFS-EILAVPNI-AEFEGTE-NSKYLDMLRLFAHGTWSDYKNNA--GHLPQ-----LVPDQVLKLKQLTVLTLAETNK 108 (177)
Q Consensus 39 i~~f~-eLl~~~~v-~~L~~~~-~~~l~~LL~if~~G~~~~~~~~~--~~~~~-----L~~~~~~Klr~LtllsL~~~~~ 108 (177)
+-.|. +|-.+|.. ..+++++ -...+++-..+..|++..|.+.. +..|. +-+-.+.++|.-.+-++++..+
T Consensus 119 ~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~ 198 (274)
T 4b4t_T 119 TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYD 198 (274)
T ss_dssp STHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 34445542 2344443 23467788899999999987642 22333 2344578999988888888888
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI 132 (177)
.++.+++++.|+.+|.+++..++-
T Consensus 199 ~i~l~~~~~~L~F~s~~e~~~F~~ 222 (274)
T 4b4t_T 199 FLPLSNIKALLFFNNEKETEKFAL 222 (274)
T ss_dssp SCCHHHHHHHHTCCSHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999877
No 46
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=75.70 E-value=2.6 Score=27.84 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHhhcc-ccCCcccChHHHHHHcCCCChHH-HHHHHHHHhHhcCccE
Q 030471 96 KQLTVLTL-AETNKVLPYDELMEELDVTNVRE-LEDFLINECMYTGIVR 142 (177)
Q Consensus 96 r~LtllsL-~~~~~~is~~~I~~~l~i~~~~e-vE~lvI~~ai~~gLI~ 142 (177)
|.+.++.+ ...+..++..+|++.++++ ... |=..|= +....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 34444433 3444479999999999997 888 887777 888999999
No 47
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=75.05 E-value=3.7 Score=28.64 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=31.2
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 030471 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (177)
Q Consensus 110 is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~ 156 (177)
++..+||+.++++ ...|=..|= +....|+|.-+-|..+++.....
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~~~ 96 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIFYQ 96 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------CCE
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeEEE
Confidence 9999999999997 889988888 89999999999887666644333
No 48
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=74.64 E-value=9.3 Score=27.47 Aligned_cols=58 Identities=21% Similarity=0.132 Sum_probs=43.6
Q ss_pred HHHHHHhhccccC-CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCEEE
Q 030471 94 KLKQLTVLTLAET-NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRCFE 153 (177)
Q Consensus 94 Klr~LtllsL~~~-~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g--kIDq~~~~v~ 153 (177)
-+-.+-|...... ..-.|.++||+.++++ ..+|...+= +.+..|+|.- +.|..++...
T Consensus 35 ~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~ 95 (135)
T 2v79_A 35 LILLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFE 95 (135)
T ss_dssp HHHHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEE
Confidence 3344555555443 4568999999999997 999999988 9999999987 5666554443
No 49
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=73.63 E-value=9.2 Score=27.10 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=43.8
Q ss_pred HHHHHHhhccccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeec
Q 030471 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAA 158 (177)
Q Consensus 94 Klr~LtllsL~~~~~~is~~~I~~~l-~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~ 158 (177)
+.+.+-|..|. .+..+|.+|++.+ +++ ...+=..+= +....|+|.-+.+...+.......+
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT 96 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSLT 96 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEEC
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEEC
Confidence 44433344444 3578999999999 697 788887777 8889999999998766554444433
No 50
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=73.56 E-value=11 Score=25.63 Aligned_cols=48 Identities=25% Similarity=0.072 Sum_probs=39.2
Q ss_pred cccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 108 KVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 108 ~~is~~~I~~~l-~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
+..++.+|++.+ +++ ...|-..+= +....|+|..+-+..++.......
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~L 82 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTL 82 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEE
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEE
Confidence 468999999999 997 888888877 899999999999876655444433
No 51
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=72.45 E-value=5 Score=28.71 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=32.7
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkI 145 (177)
..+..+|+.+||+.++++ ...|-..+= +....|+|.+.-
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~ 55 (150)
T 2w25_A 17 AADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGYS 55 (150)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEE
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEE
Confidence 344579999999999997 889988888 889999997553
No 52
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=72.35 E-value=13 Score=24.97 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=38.6
Q ss_pred CcccChHHHHHHcC-CCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 107 NKVLPYDELMEELD-VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 107 ~~~is~~~I~~~l~-i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
.+..++.+|++.++ ++ ...|=..+= +....|+|..+.+..++.......
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~L 85 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSL 85 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEE
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEE
Confidence 45799999999995 97 888888777 889999999998876655444333
No 53
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=72.27 E-value=4 Score=28.85 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=32.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
+..++..+|++.++++ ...|=..|= +....|+|.-+-|..+++....
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~~~~ 99 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKRQLII 99 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC---------CEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCcceeee
Confidence 4678999999999997 888988877 8999999998888766654433
No 54
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=72.10 E-value=11 Score=24.82 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=32.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~ 148 (177)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 459999999999997 778877776 778899999876544
No 55
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=71.58 E-value=6.5 Score=26.69 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=32.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
+..++.+|++.++++ ...|-..+= .....|+|..+-+
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 578999999999997 888988877 7888999988754
No 56
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=71.47 E-value=11 Score=25.97 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=36.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 5679999999999997 888988877 899999999888765544
No 57
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=70.96 E-value=8.8 Score=26.25 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=38.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
+..++..+|++.++++ ...|-..+= +....|+|.-.-|..++....
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEE
Confidence 4678999999999997 889988877 899999999988876665443
No 58
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=70.53 E-value=6.1 Score=27.43 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
.+..++.+|++.++++ ...|-..+= .....|+|..+-+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 4579999999999997 888988777 7778999987543
No 59
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=70.38 E-value=7.8 Score=26.93 Aligned_cols=48 Identities=13% Similarity=-0.003 Sum_probs=35.3
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
.+..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++....
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~~~ 94 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNLQI 94 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------CEE
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCcceeee
Confidence 35689999999999997 889988887 9999999999988777654433
No 60
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=70.29 E-value=7.7 Score=26.58 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=37.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~ 153 (177)
..++..+|++.++++ ...|-..|= +....|+|.-.-|..++...
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~ 94 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRL 94 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCee
Confidence 379999999999997 889988887 89999999998887665543
No 61
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=70.15 E-value=8 Score=27.62 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=39.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~ 156 (177)
+..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++.....
T Consensus 58 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~ 105 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILVT 105 (162)
T ss_dssp CTTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEeE
Confidence 3479999999999997 888888877 89999999999988776544433
No 62
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=69.22 E-value=7.1 Score=26.81 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=35.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
..++..+|++.++++ ...|-..+= +....|+|.-.-+..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999997 889988877 899999999988765543
No 63
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=69.17 E-value=12 Score=26.38 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred HHHHHhhccccCC-cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 030471 95 LKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (177)
Q Consensus 95 lr~LtllsL~~~~-~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~ 149 (177)
+-.+.|......+ .-.|..+||+.++++ ..+|-..+= +.+..|+|.-+-+...
T Consensus 36 ~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~~~ 89 (128)
T 2vn2_A 36 VLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHTDE 89 (128)
T ss_dssp HHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC----
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEECC
Confidence 3455666654433 448999999999997 999999888 9999999988766433
No 64
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.11 E-value=7.9 Score=26.73 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=38.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.....
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~~ 91 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYFL 91 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEEE
Confidence 3469999999999997 888988777 8999999999888766654433
No 65
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=68.63 E-value=9.2 Score=29.03 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=31.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
+.+|+.+||+.++++ ...|-.-+= +....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 469999999999997 888988877 88899999987
No 66
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.60 E-value=10 Score=26.12 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=37.5
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v 152 (177)
.+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++..
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R~ 93 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRRA 93 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBCS
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccCe
Confidence 45679999999999997 888988777 8999999998887655543
No 67
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=68.55 E-value=8.4 Score=25.85 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=31.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
+..++.+|++.++++ ...|-..+= .....|+|..+-+
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 458999999999997 888888777 7788999988754
No 68
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=68.06 E-value=25 Score=25.01 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHhhccccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 030471 96 KQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (177)
Q Consensus 96 r~LtllsL~~~~~~is~~~I~~~l-~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v 152 (177)
+.+-|..|. .+..+|.+|++.+ +|+ ...+=..+= +.-..|||.-+.+.....-
T Consensus 28 ~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~ 81 (131)
T 4a5n_A 28 KGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPK 81 (131)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCE
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCe
Confidence 333344443 5689999999999 997 778877777 8888999998888765543
No 69
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=67.83 E-value=6.7 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
....|+.+||+.++++ ...|...+- +|+
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3569999999999997 999998877 765
No 70
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=67.32 E-value=8.6 Score=25.72 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=32.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
+.++..+|++.++++ ...|-..+= .....|+|...-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 458999999999997 888988877 8889999987765
No 71
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=67.13 E-value=7.9 Score=28.04 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=34.5
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~ 156 (177)
..+..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++.....
T Consensus 64 ~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~ 113 (166)
T 3deu_A 64 QLPPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKRIK 113 (166)
T ss_dssp HSCSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CEEE
T ss_pred HcCCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeEEE
Confidence 334569999999999997 888888877 89999999998887666554443
No 72
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.98 E-value=8 Score=26.53 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=37.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
..++..+|++.++++ ...|-..|= +....|+|.-.-|..++....
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~ 93 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVY 93 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeE
Confidence 359999999999997 889988877 899999999988876655443
No 73
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=66.75 E-value=6.8 Score=26.81 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=35.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCc
Confidence 4579999999999997 788888777 888999999887775544
No 74
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.43 E-value=6.9 Score=24.42 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.1
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
++...|+.+||+.++++ ...|...+- +|+
T Consensus 27 ~~~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 27 DGREHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp TSSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 33579999999999997 999998776 665
No 75
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=65.83 E-value=9.6 Score=26.09 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=37.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~ 153 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..+++..
T Consensus 46 ~~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~ 90 (138)
T 1jgs_A 46 AACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRGV 90 (138)
T ss_dssp HSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSCE
T ss_pred cCCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCcee
Confidence 3468999999999997 888988777 89999999998887665543
No 76
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.36 E-value=9.3 Score=26.48 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=33.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v 152 (177)
+..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++.
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R~ 91 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGRR 91 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------C
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCCc
Confidence 5679999999999997 888988877 8999999998877655543
No 77
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=64.46 E-value=15 Score=25.10 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=32.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq 147 (177)
.+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 29 ~~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 29 RGPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp TCCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred hCCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 3568999999999997 888887777 78889999988773
No 78
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=64.04 E-value=7.7 Score=25.21 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
++...|+.+||+.++++ ...|...+- +|+
T Consensus 35 ~~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 35 DGKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp TSSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 34679999999999998 999998877 775
No 79
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=63.96 E-value=15 Score=25.16 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=36.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
..++..+|++.++++ ...|-..|= +....|+|.-.-|..+++...
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~~ 90 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRKN 90 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCEE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCeee
Confidence 589999999999997 888988877 899999999988877655433
No 80
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=63.93 E-value=6 Score=27.81 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=32.7
Q ss_pred ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 104 ~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
...+..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++...
T Consensus 49 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~ 97 (150)
T 3fm5_A 49 CEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNKL 97 (150)
T ss_dssp HHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC-----------
T ss_pred HhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchhe
Confidence 3445569999999999997 888888877 899999999988887666443
No 81
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=63.88 E-value=7.1 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHh
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMY 137 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~ 137 (177)
....||++||+.++++ ...|...+- +|+.
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~-rAlk 65 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEA-KALR 65 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHHH
Confidence 4679999999999997 899998877 7753
No 82
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=63.83 E-value=11 Score=26.08 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=36.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 41 ~~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 3479999999999997 888988777 889999999988876554
No 83
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=63.82 E-value=10 Score=26.62 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=33.2
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
.+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC------
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcCC
Confidence 34579999999999997 888988877 899999999877665544
No 84
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=63.73 E-value=11 Score=26.21 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=34.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v 152 (177)
..++..+|++.++++ ...|-..|= +....|+|.-.-|..++..
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~ 97 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRV 97 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---C
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCcce
Confidence 469999999999997 888988877 8899999999887766553
No 85
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=63.66 E-value=13 Score=26.50 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=43.2
Q ss_pred ccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecC
Q 030471 102 TLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAG 159 (177)
Q Consensus 102 sL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~ 159 (177)
.|...+...+-.+||+.++++ ...|=..|= +....|+|.=.-|..+++......++
T Consensus 39 ~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 39 NINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp HHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred HHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhcCH
Confidence 344445567778999999997 888888777 89999999999998887655444433
No 86
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=62.65 E-value=23 Score=25.34 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=35.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~ 150 (177)
.+..+|.+|++.++++ ...+=..+= +....|+|+.+-+..++
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 3578999999999997 788877777 78899999999987765
No 87
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=62.62 E-value=16 Score=25.30 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=43.3
Q ss_pred CchHHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 87 L~~~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
+++.+..-|+ .|..+...+..++..+||+.++++ ...|-..+= +....|+|.-.= +.+.++
T Consensus 11 lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~~----~~~~Lt 71 (139)
T 2x4h_A 11 LSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKKE----DGVWIT 71 (139)
T ss_dssp CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEET----TEEEEC
T ss_pred cCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEecC----CeEEEC
Confidence 4544434333 344555567789999999999997 888888777 888899998532 556555
No 88
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=61.21 E-value=18 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=36.5
Q ss_pred HHHHHHHhhcccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCc-cEE
Q 030471 93 LKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGI-VRG 143 (177)
Q Consensus 93 ~Klr~LtllsL~~-~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gL-I~g 143 (177)
..-|...|+.+.. +++.+|..+||+.++++ ...|..-+- ..-..|+ |.+
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 3456667777655 45779999999999997 888876655 5556788 775
No 89
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=60.90 E-value=20 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.3
Q ss_pred CcccChHHH----HHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 030471 107 NKVLPYDEL----MEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 107 ~~~is~~~I----~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq 147 (177)
+..++..+| ++.++++ ...|=..|= +....|+|.-.-|.
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQER 62 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 467899999 8999997 888888776 78888999988887
No 90
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=60.76 E-value=13 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=30.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkI 145 (177)
+.++..+|++.++++ ...|-..+= .....|+|.-.-
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~~ 77 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERVG 77 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEC
Confidence 459999999999997 888888777 788899998653
No 91
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=60.30 E-value=14 Score=26.01 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=35.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..++.
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcc
Confidence 369999999999997 888888777 899999999988765544
No 92
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=59.78 E-value=20 Score=29.50 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=42.8
Q ss_pred CChhhHhhhhCC--CCCCc----hHHHHHHHHHHhhcccc----CCcccChHHHHHHcCCCChHHHHHHHH
Q 030471 72 GTWSDYKNNAGH--LPQLV----PDQVLKLKQLTVLTLAE----TNKVLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 72 G~~~~~~~~~~~--~~~L~----~~~~~Klr~LtllsL~~----~~~~is~~~I~~~l~i~~~~evE~lvI 132 (177)
|++..|-+.... .|-+. +....++|.-+|-+++. ..+.++.+.+++.|+.++.++++.++-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 667666664433 33222 22357888877776665 346899999999999988899998865
No 93
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=59.72 E-value=12 Score=25.74 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=35.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-+-|..++.
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3469999999999997 788888777 889999999888765544
No 94
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=59.63 E-value=15 Score=25.37 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=37.7
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 111 s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
+..+|++.++++ ...|=..|= +....|+|.-+-|..+++......
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~L 96 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVEI 96 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEEE
Confidence 999999999997 888888777 899999999999887766544433
No 95
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=59.50 E-value=20 Score=24.37 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=35.5
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
.++..+|++.++++ ...|-..|= +....|+|.-.-|..+++
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCC
Confidence 79999999999997 888988877 899999999888765544
No 96
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=59.47 E-value=15 Score=29.76 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=41.1
Q ss_pred HHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 030471 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (177)
Q Consensus 95 lr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~ 149 (177)
.|++..+........++-.+||+.++++ ...|-..+- ++-..|+|+-+++...
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS-~~tIrRdL~-~l~~~G~v~iri~g~~ 59 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIY-RTTISRLLK-RGREQGIVTIAINYDY 59 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEecCCc
Confidence 4444444433445569999999999997 999999998 9999999997877643
No 97
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=58.98 E-value=13 Score=26.29 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=34.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..+++
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 4469999999999997 888988877 899999999887765444
No 98
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.94 E-value=8.9 Score=25.05 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=22.5
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
-.||.+||+.++++ ...|...+- +|.
T Consensus 53 g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 53 GWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 999998877 665
No 99
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=58.61 E-value=20 Score=24.54 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC-EEEEE
Q 030471 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR-CFEVQ 155 (177)
Q Consensus 96 r~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~-~v~v~ 155 (177)
+.|.++.+. ++.++..+|++.++++ ...|=..+= .....|+|.-.-|..++ .+++.
T Consensus 30 ~il~~L~~~--~~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 30 AVYAILYLS--DKPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp HHHHHHHHC--SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCSSCEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCceEEEee
Confidence 344444332 2469999999999998 888888777 88999999998876554 34443
No 100
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=58.53 E-value=13 Score=26.34 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=36.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
+..++..+|++.++++ ...|=..|= +....|+|.-+-|..+++...
T Consensus 62 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~ 107 (159)
T 3s2w_A 62 EDGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYR 107 (159)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeE
Confidence 3568999999999997 888988877 899999999998877665443
No 101
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=57.85 E-value=13 Score=26.81 Aligned_cols=44 Identities=9% Similarity=-0.053 Sum_probs=37.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~ 153 (177)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++..
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~ 101 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRREL 101 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCee
Confidence 469999999999997 888888777 89999999998887665533
No 102
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.61 E-value=8.8 Score=21.06 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.5
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 030471 110 LPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 110 is~~~I~~~l~i~~~~evE~lvI 132 (177)
.|+.+||+.++++ ...|..|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999997 889988764
No 103
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=57.60 E-value=6.1 Score=27.49 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~ 153 (177)
+..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++..
T Consensus 49 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~ 93 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSF 93 (142)
T ss_dssp TTTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------
T ss_pred CCCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCee
Confidence 3479999999999997 788888877 89999999998888766543
No 104
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=57.46 E-value=7.6 Score=26.92 Aligned_cols=42 Identities=5% Similarity=0.015 Sum_probs=33.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CC
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCc
Confidence 679999999999997 888988877 899999999888765554
No 105
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=57.25 E-value=14 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=32.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..+++
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 4569999999999997 888988877 899999999887765544
No 106
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=56.88 E-value=8.7 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=32.4
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
..+..++-.+||+.++++ ...|-..+- .....|+|..+
T Consensus 29 ~~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345468999999999997 889988888 88999999875
No 107
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=56.52 E-value=8.8 Score=29.12 Aligned_cols=48 Identities=10% Similarity=-0.121 Sum_probs=35.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++......
T Consensus 61 ~~~t~~eLa~~l~i~-~stvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~L 108 (207)
T 2fxa_A 61 NGASISEIAKFGVMH-VSTAFNFSK-KLEERGYLRFSKRLNDKRNTYVQL 108 (207)
T ss_dssp TSEEHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEEECC------CEEEE
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCceEEEEE
Confidence 469999999999997 888888777 899999999999887766544433
No 108
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=56.19 E-value=21 Score=24.42 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=31.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq 147 (177)
+..++.+|++.++++ ...|-..+= .....|+|..+-+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 357999999999997 888988777 78889999887553
No 109
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=56.01 E-value=13 Score=25.93 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=36.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 91 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDRR 91 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCCc
Confidence 3479999999999997 889988877 899999999888765543
No 110
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=55.97 E-value=9.5 Score=26.72 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=34.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g--kIDq~~~~ 151 (177)
...++..+|++.++++ ...|-..|= +....|+|.- +-|..+++
T Consensus 53 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 53 TPGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 3469999999999997 888988877 9999999998 66665554
No 111
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.87 E-value=16 Score=26.50 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=33.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~ 148 (177)
.+..+..+|++.++++ ...|=.-+= .....|+|..+-+..
T Consensus 69 ~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr 108 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGR 108 (151)
T ss_dssp GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETT
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCC
Confidence 3569999999999997 888877777 788899999886543
No 112
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=55.22 E-value=26 Score=24.68 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=41.4
Q ss_pred HHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 030471 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (177)
Q Consensus 96 r~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~ 156 (177)
+.|.++... .+..++..+|++.++++ ...|=..|= +....|+|.=.-|..+++.....
T Consensus 39 ~vL~~L~~~-~~~~~t~~eLa~~l~~~-~~tvs~~v~-~Le~~Glv~r~~~~~DrR~~~l~ 96 (147)
T 4b8x_A 39 EALVLLTFS-KSGELPMSKIGERLMVH-PTSVTNTVD-RLVRSGLVAKRPNPNDGRGTLAT 96 (147)
T ss_dssp HHHHHHHTS-GGGEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC----CEEEE
T ss_pred HHHHHHHHC-CCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCEEEeecCCcCceeEEE
Confidence 334444443 35579999999999997 888888777 89999999999998877654443
No 113
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=55.21 E-value=18 Score=25.11 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=37.3
Q ss_pred hccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 101 lsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
+.+...++.++..+||+.++++ ...|=..+= +....|+|.-. ..+.+.++
T Consensus 14 ~~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 14 YMLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE---TTTEEEEC
T ss_pred HHHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe---eCceEEEc
Confidence 3333444569999999999997 888888777 88889999865 23455555
No 114
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=55.02 E-value=25 Score=25.82 Aligned_cols=48 Identities=4% Similarity=0.009 Sum_probs=40.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~ 156 (177)
++.++..+||+.++++ ...|=..|= +....|+|.-.-|..+++.....
T Consensus 55 ~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~ 102 (189)
T 3nqo_A 55 EEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVK 102 (189)
T ss_dssp GGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEE
Confidence 5689999999999997 888888877 89999999999998776644433
No 115
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=55.00 E-value=11 Score=26.17 Aligned_cols=44 Identities=2% Similarity=-0.098 Sum_probs=31.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v 152 (177)
...++..+|++.++++ ...|=..|= +....|+|.-.-|..+++.
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~ 95 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKRT 95 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC---------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcce
Confidence 3489999999999997 888888877 8999999998877665543
No 116
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=54.96 E-value=14 Score=25.72 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=36.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 52 ~~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~R 94 (152)
T 3bj6_A 52 TPGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHAR 94 (152)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSSTT
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCccccc
Confidence 3479999999999997 888988877 899999999988765543
No 117
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.13 E-value=13 Score=22.40 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.9
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
..|+.+||+.++++ ...|...+= +|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 37999999999997 899988776 654
No 118
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=53.89 E-value=27 Score=22.70 Aligned_cols=35 Identities=3% Similarity=-0.075 Sum_probs=29.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~ 142 (177)
.+..++..+|++.++++ ...|=.+|= +....|+|.
T Consensus 27 ~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~ 61 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVE 61 (95)
T ss_dssp TTCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCcc
Confidence 34459999999999998 888888777 888999993
No 119
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=52.08 E-value=17 Score=28.50 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=36.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
.+...+..+||+.++++ ..+|+.-+- +....|+|+. ..+++|.+.
T Consensus 175 ~~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~~---~~~~~~~~~ 219 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLK-EREVREKIS-EMARFVPVKI---INDNTVVLD 219 (232)
T ss_dssp HSSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEEE---ETTTEEEEC
T ss_pred hcCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeEE---ecCCeEEec
Confidence 36789999999999998 999999888 9999999983 234556553
No 120
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=51.65 E-value=16 Score=30.77 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=38.9
Q ss_pred HHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 93 ~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
++.....++.+...+..+|-.+|++.++++ ...|-..|= +.+..|+|...
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~~ 86 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 333344455555566789999999999997 899998887 89999998763
No 121
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=51.31 E-value=12 Score=26.48 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=31.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
+..++..+|++.++++ ...|-..|= +....|+|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4579999999999997 888988877 899999999877665544
No 122
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=50.75 E-value=12 Score=26.71 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
...||.+||+.++++ ...|...+- +|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 358999999999998 999998887 764
No 123
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=50.25 E-value=24 Score=27.79 Aligned_cols=63 Identities=19% Similarity=0.076 Sum_probs=39.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe----ecCCCCCcchHHHHHHH
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF----AAGRDLRPGQLGSMIQT 173 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~----~~~R~~~~~~~~~L~~~ 173 (177)
+..++..+||+.++++ ...|-..+= .....|+|+.. ...+.+.++. .........-|...+++
T Consensus 164 ~~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~~w~~aq~~ 230 (244)
T 2wte_A 164 TKGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVIESSKSSEE 230 (244)
T ss_dssp HTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC-----------
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEECHHHHHHHHHHhcccccHHHHHH
Confidence 3469999999999998 899999888 88999999986 4455666662 12223344445554444
No 124
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=49.82 E-value=14 Score=26.02 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v 152 (177)
.+..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++.
T Consensus 59 ~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 103 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRRS 103 (160)
T ss_dssp CTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC--------
T ss_pred cCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCCe
Confidence 45579999999999997 778887777 8889999998877655543
No 125
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=48.53 E-value=9.6 Score=26.46 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=35.3
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
.++..+|++.++++ ...|=..|= +....|+|.-.-|..+++
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 85 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDRR 85 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCGG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCc
Confidence 49999999999997 888988877 899999999887765554
No 126
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=48.52 E-value=18 Score=21.27 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.2
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 030471 110 LPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 110 is~~~I~~~l~i~~~~evE~lvI 132 (177)
.|+.+||+.++++ ...|...+=
T Consensus 14 ~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 14 YTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp CCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCHHHHHHHhCCC-HHHHHHHHH
Confidence 6899999999997 888776554
No 127
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=48.14 E-value=23 Score=25.22 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=38.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
+..++..+|++.++++ ...|=..|= +....|+|.-+-|..+++......
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 108 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVAL 108 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEE
Confidence 4689999999999997 788888777 899999999999988776655444
No 128
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=48.11 E-value=40 Score=19.81 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=30.6
Q ss_pred HHHHHhhccccCCcccChHHHHHHc-----CCCChHHHHHHHHHHhHhcCcc
Q 030471 95 LKQLTVLTLAETNKVLPYDELMEEL-----DVTNVRELEDFLINECMYTGIV 141 (177)
Q Consensus 95 lr~LtllsL~~~~~~is~~~I~~~l-----~i~~~~evE~lvI~~ai~~gLI 141 (177)
-|...|..+...++.+|-++|++.+ +++ ...|-.-+= ..|++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs-~~Tv~R~L~----~lg~v 51 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVT-QATVSRDIK----ELHLV 51 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCC-HHHHHHHHH----HHTCE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcC-HHHHHHHHH----HcCCE
Confidence 3555555555666789999999999 997 888876543 35777
No 129
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=48.03 E-value=8.3 Score=26.65 Aligned_cols=49 Identities=6% Similarity=0.007 Sum_probs=39.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
+..++..+|++.++++ ...|=..|= +....|+|.-+-|..+++......
T Consensus 51 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~i~L 99 (127)
T 2frh_A 51 EKEYYLKDIINHLNYK-QPQVVKAVK-ILSQEDYFDKKRNEHDERTVLILV 99 (127)
T ss_dssp CSEEEHHHHHHHSSSH-HHHHHHHHH-HHHHTTSSCCBCCSSSSCCCEEEC
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCCeeEEEE
Confidence 3679999999999997 788888777 889999999888887766544443
No 130
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=47.94 E-value=44 Score=22.98 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=31.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
+..++.+|++.++++ ...|-..+= ..-..|+|..+-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 568999999999997 888887776 7788999988654
No 131
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=46.81 E-value=17 Score=25.30 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=23.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
...||.+||+.++++ ...|...+- +|.
T Consensus 123 ~g~s~~EIA~~lgis-~~tV~~~~~-ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKN-LKSIDNTIQ-RIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 457999999999997 999998877 664
No 132
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=46.47 E-value=34 Score=24.32 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcC
Q 030471 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTG 139 (177)
Q Consensus 98 LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~g 139 (177)
+.++.+...+ .||.+|++.++++ ...|.. +- +++..|
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 4555544444 9999999999997 888887 55 666654
No 133
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=45.57 E-value=14 Score=26.29 Aligned_cols=43 Identities=7% Similarity=-0.039 Sum_probs=34.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v 152 (177)
..++..+|++.++++ ...|=..|= +....|+|.-+-|..+++.
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR~ 108 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQRK 108 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCCS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCCe
Confidence 479999999999997 888888877 8999999998887665543
No 134
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=44.65 E-value=13 Score=25.74 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=35.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~ 150 (177)
..++..+|++.++++ ...|-..|= +....|+|.-.-|..++
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEEDE 93 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSCT
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCCC
Confidence 378999999999997 889988877 89999999988776443
No 135
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=44.27 E-value=32 Score=22.84 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=38.2
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE--EEecCCCCEEEEEe
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR--GKLDQLRRCFEVQF 156 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~--gkIDq~~~~v~v~~ 156 (177)
++.-|+-.+|++.++++ ...|-..+= +....|+|+ -.++..++.+++..
T Consensus 33 g~~gi~qkeLa~~~~l~-~~tvt~iLk-~LE~kglIkr~~~~~~~~rKvy~Ly 83 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLP-LTEINKILK-NLESKKLIKAVKSVAASKKKVYMLY 83 (91)
T ss_dssp CTTCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEECCSSCSSCCEEEES
T ss_pred CCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCcEEEEEe
Confidence 35579999999999998 888988777 889999999 44444556666653
No 136
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=43.83 E-value=24 Score=27.18 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.8
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI 132 (177)
-.|+.+||+.|+++ ...|+..+-
T Consensus 190 G~s~~eIa~~l~is-~~tV~~~~~ 212 (237)
T 3szt_A 190 GKTYGEIGLILSID-QRTVKFHIV 212 (237)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH
Confidence 37899999999997 888886544
No 137
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=43.70 E-value=68 Score=21.17 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=33.1
Q ss_pred HhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 99 tllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
.+++.+..+ ++..+||..++++ ...+...+= .....|+|+-.
T Consensus 12 ~IL~~i~~~--~~~t~La~~~~ls-~~~~~~~l~-~L~~~GLI~~~ 53 (95)
T 1r7j_A 12 AILEACKSG--SPKTRIMYGANLS-YALTGRYIK-MLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHTTC--BCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHcC--CCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 344444444 9999999999997 888888776 78889999876
No 138
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.57 E-value=23 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.4
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
-.|+.+||+.++++ ...|...+- ++.
T Consensus 36 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 61 (82)
T 1je8_A 36 GLPNKMIARRLDIT-ESTVKVHVK-HML 61 (82)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 37999999999997 899887765 543
No 139
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=43.44 E-value=8.4 Score=25.56 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 030471 125 RELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 125 ~evE~lvI~~ai~~gLI~gkIDq 147 (177)
..||+.+| .....|-|.|+|++
T Consensus 37 ~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 67999999 89999999998876
No 140
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=42.79 E-value=31 Score=22.65 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.8
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHh
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~a 135 (177)
-.++.+||+.++++ ...|+..+- ++
T Consensus 44 G~s~~eIA~~L~iS-~~TV~~~~~-~i 68 (90)
T 3ulq_B 44 GFTNQEIADALHLS-KRSIEYSLT-SI 68 (90)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 36999999999997 899987766 54
No 141
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=42.69 E-value=21 Score=25.80 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
...|+.+||+.++++ ...|...+- +|.
T Consensus 155 ~g~s~~EIA~~lgis-~~tV~~~l~-ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCP-VGTVRSRIF-RAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 458999999999998 999998877 765
No 142
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=42.40 E-value=31 Score=26.25 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=18.9
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI 132 (177)
-.|+.+||+.++++ ...|+..+-
T Consensus 188 g~s~~eIa~~l~is-~~tV~~~~~ 210 (234)
T 1l3l_A 188 GKTMEEIADVEGVK-YNSVRVKLR 210 (234)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 46999999999997 888876554
No 143
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=42.35 E-value=18 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=26.7
Q ss_pred hhccccCCcccChHHHHHHcC-----CCChHHHHHHHHHHhHhcC
Q 030471 100 VLTLAETNKVLPYDELMEELD-----VTNVRELEDFLINECMYTG 139 (177)
Q Consensus 100 llsL~~~~~~is~~~I~~~l~-----i~~~~evE~lvI~~ai~~g 139 (177)
|+...+..+.++|++|.+.+. ++ .+++|.++- ..-..|
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld-~e~id~i~~-~L~~~g 56 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFD-TNLIERIHE-ELEKHG 56 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCC-HHHHHHHHH-HHHHTC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCC-HHHHHHHHH-HHHHCC
Confidence 555666666899999999985 44 788888755 434444
No 144
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=42.30 E-value=16 Score=25.39 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=32.6
Q ss_pred cCCcccChHHHHHHc--CCCChHHHHHHHHHHhHhcCccEEE
Q 030471 105 ETNKVLPYDELMEEL--DVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 105 ~~~~~is~~~I~~~l--~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
..++.+|+.+||+.+ +++ ...|-.-+= +....|+|+..
T Consensus 23 ~~~g~~s~~eLA~~l~~giS-~~aVs~rL~-~Le~~GLV~~~ 62 (111)
T 3b73_A 23 HEEGNGSPKELEDRDEIRIS-KSSVSRRLK-KLADHDLLQPL 62 (111)
T ss_dssp HHHSCBCHHHHHTSTTCCSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHcCCCCHHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 334589999999999 997 889988888 88999999985
No 145
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=42.22 E-value=37 Score=21.08 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=31.5
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~ 142 (177)
+.++.+..+.+++.++++ .++|=..+= +.-..|||+
T Consensus 21 ~sGGildI~~~a~kygV~-kdeV~~~Lr-rLe~KGLI~ 56 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVE-KQEVVKLLE-ALKNKGLIA 56 (59)
T ss_dssp HTTSEEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEE
T ss_pred HcCCEEeHHHHHHHhCCC-HHHHHHHHH-HHHHCCCee
Confidence 468899999999999998 899988877 888888886
No 146
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.16 E-value=24 Score=23.20 Aligned_cols=26 Identities=4% Similarity=0.261 Sum_probs=21.8
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
-.|+.+||+.++++ ...|...+- ++.
T Consensus 42 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 67 (95)
T 3c57_A 42 GLTNKQIADRMFLA-EKTVKNYVS-RLL 67 (95)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 37999999999997 999998766 544
No 147
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=42.08 E-value=39 Score=25.70 Aligned_cols=52 Identities=6% Similarity=0.167 Sum_probs=41.5
Q ss_pred HhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 99 tllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
+|..|...+..++-.+||+.++++ ...|=..+= +.-..|+|.-.=+ +.+.+|
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs-~~tvs~~l~-~Le~~GlV~r~~~---~~i~LT 61 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVS-PPAVTEMMK-KLLAEELLIKDKK---AGYLLT 61 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEETT---TEEEEC
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEEecC---CCeEEC
Confidence 455566677889999999999997 888988888 8999999976543 456555
No 148
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=41.75 E-value=38 Score=28.01 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=36.4
Q ss_pred HHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 98 LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
..++.+...+..+|-.+|++.++++ ...|-..|= +.+..|+|..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~-~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVH-EMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 3455555667889999999999997 899998877 8999999865
No 149
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=41.46 E-value=7.3 Score=28.36 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=45.0
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC-----CCEEEEE-eecCCCCCcchHHHHHHHhcc
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL-----RRCFEVQ-FAAGRDLRPGQLGSMIQTLSN 176 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~-----~~~v~v~-~~~~R~~~~~~~~~L~~~L~~ 176 (177)
..+..+|+.+||+.++++ ...|-.-+- +.-..|+|++..-.. ...+.+. ....+..+++++..+.+.+..
T Consensus 23 ~~~~~ls~~eLa~~lgvS-r~~vr~al~-~L~~~Gli~~~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~l~~ 98 (163)
T 2gqq_A 23 QKDGRISNVELSKRVGLS-PTPCLERVR-RLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQK 98 (163)
T ss_dssp HHCSSCCTTGGGTSSSCC-TTTSSSTHH-HHHHHTSEEEEEEEECTTTTTCCCEEEEEEECCCCSTTHHHHHHHHHSS
T ss_pred HhCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEEeCCHHHcCCceEEEEEEEeccCChhHHHHHHHHHHh
Confidence 345567999999999997 777766666 677899998643221 2222221 233333456778888877654
No 150
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=41.07 E-value=19 Score=23.60 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=32.4
Q ss_pred ccCCcccChHHHHHHcCCCChH-HHHHHHHHHhHhcCccEE
Q 030471 104 AETNKVLPYDELMEELDVTNVR-ELEDFLINECMYTGIVRG 143 (177)
Q Consensus 104 ~~~~~~is~~~I~~~l~i~~~~-evE~lvI~~ai~~gLI~g 143 (177)
....+..+=.+||+.|+|+ .. .|-.-+- +.-..|+|.-
T Consensus 20 Lk~~g~~ta~eiA~~Lgit-~~~aVr~hL~-~Le~eGlV~~ 58 (79)
T 1xmk_A 20 LFNVSDSSALNLAKNIGLT-KARDINAVLI-DMERQGDVYR 58 (79)
T ss_dssp HHHTCCEEHHHHHHHHCGG-GHHHHHHHHH-HHHHTTSEEE
T ss_pred HHHcCCcCHHHHHHHcCCC-cHHHHHHHHH-HHHHCCCEEe
Confidence 3556688999999999998 77 9998888 8888999983
No 151
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=41.05 E-value=43 Score=22.03 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhccccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 91 QVLKLKQLTVLTLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 91 ~~~Klr~LtllsL~~~~~~i-s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
....+|..-+......+..+ |..+||+.++++ ...|-.-+- ..-..|+|..+
T Consensus 16 l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vS-r~tvr~al~-~L~~~Gli~~~ 68 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPGDTLPSVADIRAQFGVA-AKTVSRALA-VLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSC-TTHHHHHTT-TTTTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 34455543333344556677 999999999997 888888777 78889998753
No 152
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=40.72 E-value=57 Score=21.72 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=32.4
Q ss_pred CcccChHHHHHHcC----CCChHHHHHHHHHHhHhcCccEEEec
Q 030471 107 NKVLPYDELMEELD----VTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 107 ~~~is~~~I~~~l~----i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
++.++..+|++.++ ++ ...|=..|= +....|+|.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s-~~tv~~~l~-~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWS-PKTIRTLIT-RLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCC-HHHHHHHHH-HHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCc-HhhHHHHHH-HHHHCCCeEEEec
Confidence 45799999999998 65 788888877 8999999998777
No 153
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=40.67 E-value=32 Score=26.24 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=18.9
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI 132 (177)
-.|+.+||+.++++ ...|+..+-
T Consensus 190 g~s~~eIa~~l~is-~~tV~~~~~ 212 (236)
T 2q0o_A 190 GKTASVTANLTGIN-ARTVQHYLD 212 (236)
T ss_dssp TCCHHHHHHHHCCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 46899999999997 888876654
No 154
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=40.57 E-value=9.1 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 030471 125 RELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 125 ~evE~lvI~~ai~~gLI~gkIDq 147 (177)
..||+.+| .....|-|.|+|++
T Consensus 35 ~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 67999999 89999999998876
No 155
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=40.46 E-value=29 Score=21.39 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=21.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
.-.|+.+||+.++++ ...|...+- ++.
T Consensus 30 ~g~s~~eIA~~l~is-~~tV~~~~~-r~~ 56 (79)
T 1x3u_A 30 AGLPNKSIAYDLDIS-PRTVEVHRA-NVM 56 (79)
T ss_dssp TTCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999997 888887765 543
No 156
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=40.36 E-value=22 Score=20.43 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=18.2
Q ss_pred cChHHHHHHcCCCChHHHHHHH
Q 030471 110 LPYDELMEELDVTNVRELEDFL 131 (177)
Q Consensus 110 is~~~I~~~l~i~~~~evE~lv 131 (177)
.|+.+||+.++++ ...|..++
T Consensus 32 ~s~~eIA~~lgis-~~TV~~~l 52 (55)
T 2x48_A 32 YTVQQIANALGVS-ERKVRRYL 52 (55)
T ss_dssp CCHHHHHHHHTSC-HHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHH
Confidence 5999999999997 88887764
No 157
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.17 E-value=24 Score=22.87 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=21.2
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
-.|+.+||+.++++ ...|...+- ++.
T Consensus 44 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 69 (91)
T 2rnj_A 44 GYSNQEIASASHIT-IKTVKTHVS-NIL 69 (91)
T ss_dssp TCCTTHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888887765 543
No 158
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.46 E-value=68 Score=19.95 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=30.1
Q ss_pred cccChHHHHHHc-----CCCChHHHHHHHHHHhHhcCccEEEe
Q 030471 108 KVLPYDELMEEL-----DVTNVRELEDFLINECMYTGIVRGKL 145 (177)
Q Consensus 108 ~~is~~~I~~~l-----~i~~~~evE~lvI~~ai~~gLI~gkI 145 (177)
+.++.++|++.+ +++ ...|-..+= .....|+|.-.-
T Consensus 32 ~~~s~~el~~~l~~~~~~is-~~TVyR~L~-~L~~~Glv~~~~ 72 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIG-LATVYRVLN-QFDDAGIVTRHN 72 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCC-HHHHHHHHH-HHHHHTSEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-HhhHHHHHH-HHHHCCCeEEEe
Confidence 689999999999 897 888888776 778899987543
No 159
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.03 E-value=48 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=18.1
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 030471 110 LPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 110 is~~~I~~~l~i~~~~evE~lvI 132 (177)
.|+.+||+.++++ ...|...+=
T Consensus 27 ~s~~eIA~~l~is-~~tV~~~~~ 48 (74)
T 1fse_A 27 KTTKEIASELFIS-EKTVRNHIS 48 (74)
T ss_dssp CCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH
Confidence 4999999999997 877776554
No 160
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=38.38 E-value=49 Score=22.13 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkI 145 (177)
...++.+|++.++++ ...|=..+= .....|+|.-.-
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~-~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLR-VLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHH-HHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEe
Confidence 468999999999997 888888777 777899987654
No 161
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=37.71 E-value=37 Score=26.31 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=38.3
Q ss_pred HHhhcc-ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 98 LTVLTL-AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 98 LtllsL-~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
+.++.+ +..++.++..+|++.++++ ...|-.++= .....|+|.-. .++...+
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~~---~~~~Y~l 63 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMS-VSNAYKYMV-VLEEKGFVLRK---KDKRYVP 63 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC---TTSCEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEC---CCCcEEE
Confidence 444443 3345579999999999998 889988877 78889999865 3444444
No 162
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=37.47 E-value=88 Score=20.89 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=33.1
Q ss_pred ccccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 102 TLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 102 sL~~~~~~i-s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
.....+..+ |..+||+.++++ ...|-.-+- ..-..|+|..+
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVS-r~tVr~al~-~L~~~GlI~~~ 76 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGIT-RSVIVNALR-KLESAGVIESR 76 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hhhcCCCcCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 444555566 999999999997 889988777 78889998764
No 163
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=37.03 E-value=42 Score=26.26 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHhhcccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 96 KQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 96 r~LtllsL~~-~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
|-+.|+.+.. .+..++..+|++.++++ ...+=.++- .....|+|.- |...+...+.
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~-ksT~~RlL~-tL~~~G~v~~--~~~~~~Y~lG 63 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMN-KATVYRLMS-ELQEAGFVEQ--VEGARSYRLG 63 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE--CSSSSEEEEC
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--cCCCCcEEcC
Confidence 4466776544 46789999999999998 889999888 8889999974 4444565543
No 164
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=37.03 E-value=17 Score=25.37 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=31.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE--ecCCCCEE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK--LDQLRRCF 152 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk--IDq~~~~v 152 (177)
.++.++..+|++.++++ ...|=..|= +....|+|.-+ -|..+++.
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC-----------
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCCe
Confidence 35679999999999997 788888877 89999999973 36666554
No 165
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=36.89 E-value=32 Score=23.11 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=18.3
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI 132 (177)
-.++.+||+.++++ ...|...+-
T Consensus 49 G~s~~EIA~~L~iS-~~TV~~~l~ 71 (99)
T 1p4w_A 49 GFLVTEIAKKLNRS-IKTISSQKK 71 (99)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 46899999999997 877775544
No 166
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.93 E-value=35 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=21.1
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
..|+.+||+.++++ ...|...+= +|.
T Consensus 41 g~s~~EIA~~lgiS-~~tV~~~l~-ra~ 66 (113)
T 1xsv_A 41 DYSLSEIADTFNVS-RQAVYDNIR-RTG 66 (113)
T ss_dssp CCCHHHHHHHTTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888887665 543
No 167
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=35.66 E-value=64 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=31.2
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
+.+...|+.+||++++++ ...|-..+- ..-..|+|...
T Consensus 20 ~~g~~~s~~eia~~lgl~-~~tv~~~l~-~Le~~G~i~~~ 57 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRIT-PRGALLHLI-ALEKKGYIERK 57 (196)
T ss_dssp HHSSCCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECC
T ss_pred HhCCCCCHHHHHHHcCCC-cHHHHHHHH-HHHHCCCEEec
Confidence 456789999999999998 567888877 77788988654
No 168
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=34.61 E-value=48 Score=26.90 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=32.1
Q ss_pred HHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 030471 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (177)
Q Consensus 98 LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~ 142 (177)
..|+.+...++.+|.++||+.++++ ...|-.-+- ..-..|++.
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~l~vS-~~ti~r~l~-~L~~~G~~i 50 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGETLGMS-RAAINKHIQ-TLRDWGVDV 50 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHTTCCC
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCcE
Confidence 3444444567889999999999997 888877666 555677764
No 169
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=33.71 E-value=60 Score=24.60 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=33.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq 147 (177)
+..++.+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 27 ~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 568999999999997 888887777 88899999998874
No 170
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=33.50 E-value=47 Score=25.57 Aligned_cols=54 Identities=6% Similarity=0.040 Sum_probs=39.3
Q ss_pred HHHhhcc-ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 97 QLTVLTL-AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 97 ~LtllsL-~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
-+.++.+ +..+..++..+|++.++++ ...|-.++- .....|+|.- |...+...+
T Consensus 8 ~l~iL~~l~~~~~~~s~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~--~~~~~~Y~l 62 (241)
T 2xrn_A 8 AASIMRALGSHPHGLSLAAIAQLVGLP-RSTVQRIIN-ALEEEFLVEA--LGPAGGFRL 62 (241)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHTTSC-HHHHHHHHH-HHHTTTSEEE--CGGGCEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--eCCCCeEEE
Confidence 3455543 3444579999999999998 889998888 8888999976 333455444
No 171
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=33.47 E-value=63 Score=25.14 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHhhccc-cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 96 r~LtllsL~-~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
|-+.++.+. ..++.++..+|++.++++ ...|-.++- .....|+|.-
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~gl~-kstv~r~l~-tL~~~G~v~~ 70 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGTKLP-KTTVVRLVA-TMCARSVLTS 70 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE
Confidence 345666543 345689999999999998 888888877 7788999876
No 172
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=33.10 E-value=39 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.9
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
-.|+.+||+.++++ ...|...+- +|.
T Consensus 38 g~s~~EIA~~lgiS-~~tV~~~l~-ra~ 63 (113)
T 1s7o_A 38 DYSLAEIADEFGVS-RQAVYDNIK-RTE 63 (113)
T ss_dssp CCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 37999999999997 889888776 654
No 173
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=33.07 E-value=55 Score=26.61 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=36.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
++.+|+++||+.++++ ..-+..|+= -+...|+++-. .+++..+..
T Consensus 48 ~~~~t~~eLA~~~g~~-~~~l~rlLr-~l~~~g~l~~~----~~~y~~t~~ 92 (363)
T 3dp7_A 48 REGYTLQEISGRTGLT-RYAAQVLLE-ASLTIGTILLE----EDRYVLAKA 92 (363)
T ss_dssp TTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEE----TTEEEECHH
T ss_pred CCCCCHHHHHHHhCcC-HHHHHHHHH-HHhhCCCeEec----CCEEecccc
Confidence 5689999999999997 899999887 78899999652 566666643
No 174
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.00 E-value=34 Score=18.76 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.0
Q ss_pred cChHHHHHHcCCCChHHHHHHH
Q 030471 110 LPYDELMEELDVTNVRELEDFL 131 (177)
Q Consensus 110 is~~~I~~~l~i~~~~evE~lv 131 (177)
.|..+||+.++++ ...|-.|+
T Consensus 22 ~s~~~ia~~lgvs-~~Tv~r~l 42 (52)
T 1jko_C 22 HPRQQLAIIFGIG-VSTLYRYF 42 (52)
T ss_dssp CCHHHHHHTTSCC-HHHHHHHS
T ss_pred CCHHHHHHHHCCC-HHHHHHHH
Confidence 7999999999997 88887664
No 175
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=32.85 E-value=1.2e+02 Score=20.90 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhccccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCcchHHH
Q 030471 91 QVLKLKQLTVLTLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGS 169 (177)
Q Consensus 91 ~~~Klr~LtllsL~~~~~~i-s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R~~~~~~~~~ 169 (177)
....++..-+-.--..+..+ |-.++|+.++++ ...|-.-+- ..-..|+|..+ +-.|+ +|....++.....++..
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVS-r~tVReAl~-~L~~eGlv~~~--~g~G~-~V~~~~~~~~~~~~~~~ 93 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVN-PNTVSKAYQ-ELERQEVIITV--KGKGT-FIANQTDKLSSPKKLAE 93 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTEE-EECCCSSCCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEEE--cCcEE-EEeCCchhhccHHHHHH
Confidence 34555554444433456666 899999999997 899988877 78889999765 33343 44443344444445555
Q ss_pred HHHHh
Q 030471 170 MIQTL 174 (177)
Q Consensus 170 L~~~L 174 (177)
++..|
T Consensus 94 ~r~~l 98 (134)
T 4ham_A 94 TRTKL 98 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 176
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=32.65 E-value=49 Score=30.37 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=32.0
Q ss_pred hhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 030471 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (177)
Q Consensus 100 llsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~ 142 (177)
++-+-+....+||++|++.++++ .+++..-+- ..+..|++.
T Consensus 594 iLllFn~~~~~t~~ei~~~t~i~-~~~l~r~L~-~l~k~~iL~ 634 (760)
T 1ldj_A 594 ILLQYNTEDAYTVQQLTDSTQIK-MDILAQVLQ-ILLKSKLLV 634 (760)
T ss_dssp HHHGGGSSSEEEHHHHHHHTCCC-HHHHHHHHH-HHHHTTTEE
T ss_pred HHHHhcCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcce
Confidence 33334456789999999999998 888887776 677788875
No 177
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=31.41 E-value=86 Score=18.72 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=29.1
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 111 s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
.|.+||++++=+ ++-|=.++. .=++ ..|+|| +++..|+
T Consensus 13 Nf~~Ia~~L~R~-p~hv~ky~~-~ELG---t~g~id--~~rlii~ 50 (52)
T 1k8b_A 13 NFRELAKAVNRD-EEFFAKYLL-KETG---SAGNLE--GGRLILQ 50 (52)
T ss_dssp CHHHHHHHHHTC-HHHHHHHHH-HHHS---SEEEEE--TTEEEEE
T ss_pred CHHHHHHHHCCC-HHHHHHHHH-HHhC---CCeeec--CCEEEEe
Confidence 799999999987 777777766 4333 789999 6676654
No 178
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=31.18 E-value=72 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=40.2
Q ss_pred HHHHhhccc-cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 96 r~LtllsL~-~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
|-+.++.+. ..+..++..+|++.++++ ...|-.++- .....|+|.-. .+...+.
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-~L~~~G~v~~~----~~~Y~Lg 69 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEAGLS-RPAVRRILL-TLQKLGYVAGS----GGRWSLT 69 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE----TTEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeC----CCEEEEc
Confidence 335555443 345789999999999998 889998887 78889999863 3565554
No 179
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=30.28 E-value=53 Score=28.40 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=38.4
Q ss_pred HHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 94 Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
.+.+|.++.++ .++-|.-+||+.+++| .+.+...+- .....|||++
T Consensus 389 ~~~~l~~L~~~--dG~~slldia~~~~~~-~~~~~~~~~-~l~~~~l~~~ 434 (435)
T 3k9t_A 389 EFAMFWVLNMS--DGKNSLLDIAYKSGME-FRRIKYAAD-ALYRVELLKL 434 (435)
T ss_dssp HHHHHHHHHHC--EEEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTCEEE
T ss_pred HHHHHHHHHhc--cCCccHHHHHHHhCcC-HHHHHHHHH-HHHHccCccc
Confidence 45677777775 4567899999999998 999999888 8899999984
No 180
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=29.54 E-value=1.2e+02 Score=24.21 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=42.6
Q ss_pred HHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 92 VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 92 ~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
+.-...|-|.+...+ +.+|+++||+.++++ ..-+..|+= -+...|+++- ..+++..+..
T Consensus 39 l~~a~~lglf~~l~~-g~~t~~elA~~~g~~-~~~l~rlLr-~l~~~g~l~~----~~~~y~~t~~ 97 (348)
T 3lst_A 39 LRAAAAVGVADHLVD-GPRTPAELAAATGTD-ADALRRVLR-LLAVRDVVRE----SDGRFALTDK 97 (348)
T ss_dssp HHHHHHHTGGGGGTT-SCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE----ETTEEEECTT
T ss_pred HHHHHHcCchhHhhC-CCCCHHHHHHHhCcC-HHHHHHHHH-HHHhCCCEEe----cCCEEecCHH
Confidence 334444555554443 589999999999997 889999877 7888999876 3456666643
No 181
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=29.54 E-value=53 Score=29.24 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=39.8
Q ss_pred HHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHh-----cCccEEEecCCCCEEEEE
Q 030471 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMY-----TGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 97 ~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~-----~gLI~gkIDq~~~~v~v~ 155 (177)
.+.++.++..+..+|-.++++.++++ ..++...+= +... .|+|++. .++.+++
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~s-~~~~~~~L~-~L~~~~~~~~glie~~----g~~y~L~ 489 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQSG-KEAARNALE-AARQTTVAGAPLIIAH----DGVWLLG 489 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTSC-HHHHHHHHH-HHHTCEETTEESEEEE----TTEEEEC
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCcC-HHHHHHHHH-HHHhhhccccceEEEe----CCEEEEC
Confidence 34566666678899999999999997 899998776 6666 6788774 3555554
No 182
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=29.45 E-value=67 Score=25.09 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHHHhhccc-cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 96 r~LtllsL~-~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
|-+.++.+. ...+.++..+|++.++++ ...|-.++- .....|+|.-. .+...+.
T Consensus 22 r~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-tL~~~G~v~~~----~~~Y~Lg 76 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARATDLT-RATARRFLL-TLVELGYVATD----GSAFWLT 76 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEES----SSEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec----CCEEEEc
Confidence 335555543 345789999999999998 889988877 77889998762 3555543
No 183
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=28.92 E-value=18 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 030471 125 RELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 125 ~evE~lvI~~ai~~gLI~gkIDq 147 (177)
..||+.+| .+...|-|.++|++
T Consensus 67 ~~VE~~LI-~lAq~Gqi~~kIte 88 (118)
T 2cru_A 67 KAVENYLI-QMARYGQLSEKVSE 88 (118)
T ss_dssp HHHHHHHH-HHHHHTCCCSCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 67999999 89999999999875
No 184
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=28.80 E-value=46 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=19.9
Q ss_pred HHhhccccCCcccChHHHHHHcCCC
Q 030471 98 LTVLTLAETNKVLPYDELMEELDVT 122 (177)
Q Consensus 98 LtllsL~~~~~~is~~~I~~~l~i~ 122 (177)
...+.-...+++.||.+||+.++.|
T Consensus 11 w~~l~~IP~G~v~TYg~IA~~~G~p 35 (116)
T 3gva_A 11 YDAVCEIPYGKVSTYGEIARYVGMP 35 (116)
T ss_dssp HHHHTTSCTTCBBCHHHHHHHTTCT
T ss_pred HHHHhcCCCCCeEeHHHHHHHhCCC
Confidence 4445445679999999999999976
No 185
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.17 E-value=48 Score=24.50 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
...|+.+||+.++++ ...|...+= +|.
T Consensus 202 ~g~s~~EIA~~lgis-~~~V~~~~~-ra~ 228 (239)
T 1rp3_A 202 EELPAKEVAKILETS-VSRVSQLKA-KAL 228 (239)
T ss_dssp SCCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHHH-HHH
Confidence 468999999999998 999988776 654
No 186
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=27.92 E-value=65 Score=22.50 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=34.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
++.++..+|++.++++ ...|-..+= +....|+|.-+=+ +.++++
T Consensus 52 ~~~~~~~~la~~l~vs-~~tvs~~l~-~Le~~Glv~r~~~---~~~~lT 95 (155)
T 2h09_A 52 VGEARQVDMAARLGVS-QPTVAKMLK-RLATMGLIEMIPW---RGVFLT 95 (155)
T ss_dssp HSCCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTCEEEETT---TEEEEC
T ss_pred CCCcCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEecC---CceEEC
Confidence 4568999999999997 888887777 7888899875532 456665
No 187
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=27.78 E-value=71 Score=26.74 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=42.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCC
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGR 160 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R 160 (177)
..++-.+|++.++++ ...|=.+|= +....|+|.=+-|..+++......+++
T Consensus 419 ~~~~~~~l~~~~~~~-~~~~t~~~~-~le~~g~v~r~~~~~D~R~~~i~lT~~ 469 (487)
T 1hsj_A 419 NEISSKEIAKCSEFK-PYYLTKALQ-KLKDLKLLSKKRSLQDERTVIVYVTDT 469 (487)
T ss_dssp SEEEHHHHHHSSCCC-HHHHHHHHH-HHHTTTTSCCEECCSSSSCCEEECCSS
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCCCeEEEEECHH
Confidence 689999999999997 888888777 999999999999987777666555544
No 188
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=27.24 E-value=19 Score=25.52 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 030471 125 RELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 125 ~evE~lvI~~ai~~gLI~gkIDq 147 (177)
..||+.+| .....|-|.|+|++
T Consensus 70 ~~VE~~li-~laq~Gql~~ki~e 91 (116)
T 2hvu_A 70 QAVETYLK-KLIATNNVTHKITE 91 (116)
T ss_dssp HHHHHHHH-HHHHHSCCSSCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 67999999 89999999998876
No 189
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=27.20 E-value=1.1e+02 Score=24.73 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=41.3
Q ss_pred HHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE-EEEEeecCC
Q 030471 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC-FEVQFAAGR 160 (177)
Q Consensus 94 Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~-v~v~~~~~R 160 (177)
-...|-|.+... .+.+|.++||+.++++ ...++.|+= -+...|+++-. + .++ +..+....+
T Consensus 57 ~a~~lglf~~l~-~g~~t~~eLA~~~g~~-~~~l~rlLr-~L~~~g~l~~~--~-~~~~y~~t~~s~~ 118 (369)
T 3gwz_A 57 VAVELGVPELLQ-EGPRTATALAEATGAH-EQTLRRLLR-LLATVGVFDDL--G-HDDLFAQNALSAV 118 (369)
T ss_dssp HHHHHTTGGGGT-TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSEEC--S-STTEEECCHHHHT
T ss_pred HHHHCChhhhhc-CCCCCHHHHHHHHCcC-HHHHHHHHH-HHHhCCCEEEe--C-CCceEecCHHHHH
Confidence 333444554444 4589999999999997 889999877 67889998742 2 344 555544333
No 190
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=26.98 E-value=1.4e+02 Score=19.92 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 87 L~~~~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
|++.+..-++.|....-...++.+++.+|++.+.++ ...+=..|= ..-..|||.-..+...+.
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~-~stLsR~l~-rLe~~GLV~r~~~~D~R~ 76 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLP-MSVLRRVLT-QLQAAGLADVSVEADGRG 76 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTSCE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCc-hhhHHHHHH-HHHHCCCEEeecCCCCce
Confidence 666665555555544333356778999999999998 777777776 788899999888854444
No 191
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=26.52 E-value=1.6e+02 Score=20.21 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHHHHHHHhhccccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 92 VLKLKQLTVLTLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 92 ~~Klr~LtllsL~~~~~~i-s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
...++..-+-.-...+..+ |-.++|+.++++ ...|-.-+- .....|+|..
T Consensus 17 ~~~l~~~I~~g~~~~G~~lPse~~La~~~~vS-r~tvr~Al~-~L~~~Gli~~ 67 (126)
T 3by6_A 17 VDRIKNEVATDVLSANDQLPSVRETALQEKIN-PNTVAKAYK-ELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHTTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE
Confidence 3444443333333456677 999999999997 899988877 8888999865
No 192
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=25.87 E-value=22 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 030471 125 RELEDFLINECMYTGIVRGKLDQ 147 (177)
Q Consensus 125 ~evE~lvI~~ai~~gLI~gkIDq 147 (177)
..||+.+| .....|-|.|+|++
T Consensus 70 ~~VE~~Li-~lAq~Gql~~kVsE 91 (127)
T 2jxn_A 70 QAVETYLK-KLIATNNVTHKITE 91 (127)
T ss_dssp HHHHHHHH-HHHHHSCCCSCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 67999999 89999999999875
No 193
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=25.60 E-value=64 Score=25.25 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.9
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 030471 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (177)
Q Consensus 105 ~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~ 150 (177)
..++.++.+++|+.++++ .++|...+= + +. .+ .+|..++
T Consensus 32 a~Grpv~~~~LA~~~g~~-~~~v~~~L~-~-l~--~~--~~D~~G~ 70 (220)
T 3f2g_A 32 AKGRPVSRTTLAGILDWP-AERVAAVLE-Q-AT--ST--EYDKDGN 70 (220)
T ss_dssp TTTSCBCHHHHHHHHTCC-HHHHHHHHH-H-CT--TC--EECTTSC
T ss_pred hcCCCCCHHHHHHHhCcC-HHHHHHHHH-h-CC--cE--EECCCCC
Confidence 389999999999999998 999998765 4 42 22 3777544
No 194
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=25.48 E-value=45 Score=23.08 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHhhccccCCcccChHHHHHHcCCC
Q 030471 98 LTVLTLAETNKVLPYDELMEELDVT 122 (177)
Q Consensus 98 LtllsL~~~~~~is~~~I~~~l~i~ 122 (177)
...+.-...+++.||.+||+.++.|
T Consensus 9 ~~~l~~IP~G~v~TYg~iA~~~G~p 33 (108)
T 2kif_A 9 FAVIHQIPKGKVSTYGEIAKMAGYP 33 (108)
T ss_dssp HHHHTTCCTTCBEEHHHHHHHHTCT
T ss_pred HHHHhcCCCCCcEeHHHHHHHhCCC
Confidence 4444444579999999999999986
No 195
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=25.41 E-value=95 Score=25.14 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHhhcc-ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 98 LTVLTL-AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 98 LtllsL-~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
|-|.+. ++..+.+|.++||+.++++ ..-++.|+= -+...|+++-.-+...+++..+
T Consensus 31 Lglfd~L~~~~~p~t~~eLA~~~g~~-~~~l~rlLr-~L~~~gll~~~~~~~~~~y~~t 87 (353)
T 4a6d_A 31 LGVFDLLAEAPGPLDVAAVAAGVRAS-AHGTELLLD-ICVSLKLLKVETRGGKAFYRNT 87 (353)
T ss_dssp HTHHHHHHHSSSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred cCHHHHHhcCCCCCCHHHHHHhhCcC-HHHHHHHHH-HHHHCCCEEEeccCccceeeCC
Confidence 344443 3456789999999999997 888998766 5677898865433333344443
No 196
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=25.34 E-value=56 Score=21.37 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=28.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkID 146 (177)
+..++.+|++.++++ ...|-.-+= ..-.. +|..+-+
T Consensus 40 ~~~~~~ela~~l~is-~stvs~hL~-~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLP-QSTVSQHLC-KMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHH-hhhheEe
Confidence 468999999999998 788877665 55566 8887754
No 197
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=25.16 E-value=51 Score=22.62 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=29.7
Q ss_pred HHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCcc
Q 030471 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIV 141 (177)
Q Consensus 97 ~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI 141 (177)
++.++.-+. ...+|+.+.++..+| |..+|+.|+= +...|=+
T Consensus 39 K~~VV~~v~-~g~lS~~EAa~ry~I-s~~ei~~W~r--~y~~~G~ 79 (101)
T 2oa4_A 39 KIAVVRGVI-YGLITLAEAKQTYGL-SDEEFNSWVS--ALAEHGK 79 (101)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHTTCS-SHHHHHHHHH--HHHCCCS
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhCC-CHHHHHHHHH--HHHHHhH
Confidence 445554333 457999999999999 5999999965 5655433
No 198
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=25.03 E-value=20 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
...||.+||+.+|++ ...|...+- +|.
T Consensus 150 ~g~s~~eIA~~lgis-~~tV~~~l~-ra~ 176 (184)
T 2q1z_A 150 GDLTHRELAAETGLP-LGTIKSRIR-LAL 176 (184)
T ss_dssp SCCSSCCSTTTCCCC-CHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 348999999999998 899998877 765
No 199
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=24.98 E-value=22 Score=24.62 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=26.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~ 153 (177)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..+++..
T Consensus 56 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~DrR~~ 99 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRR-GASITSMLQ-GLEKKGYIERRIPENNARQK 99 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHH-HHHHTTSBCCC--------C
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeeCCCCCchhh
Confidence 679999999999997 778887777 88999999988877666543
No 200
>2hng_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE; 1.63A {Streptococcus pneumoniae} SCOP: d.33.1.2
Probab=24.90 E-value=19 Score=25.85 Aligned_cols=35 Identities=9% Similarity=0.206 Sum_probs=24.0
Q ss_pred ccEEEecCCCCEEEEEeecCCCCCcchHHHHHHHh
Q 030471 140 IVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTL 174 (177)
Q Consensus 140 LI~gkIDq~~~~v~v~~~~~R~~~~~~~~~L~~~L 174 (177)
.|+|.|.|+.+...=..-.|-+|+.++|+.|..=|
T Consensus 68 viSG~IsQiv~i~dr~~~~~sd~~q~ev~~LsrPL 102 (127)
T 2hng_A 68 VISGTISQVNHIDGRIVNEPSELNQEEVETLARPC 102 (127)
T ss_dssp EEEEEEEEEEEEETCCCSSGGGSCHHHHHHHHHHH
T ss_pred EEEeeeeeeeeecccccCCcccCCHHHHHHHHHHH
Confidence 37899988554333223577889999999987543
No 201
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=24.84 E-value=57 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI 132 (177)
..+||++|++.++++ .+++..-+-
T Consensus 214 ~~lt~~ei~~~t~i~-~~~L~r~L~ 237 (382)
T 3dpl_C 214 EKISFENLKLATELP-DAELRRTLW 237 (382)
T ss_dssp CCEEHHHHHHHHCCC-HHHHHHHHH
T ss_pred CcCcHHHHHHHHCcC-HHHHHHHHH
Confidence 689999999999998 888887655
No 202
>2o2a_A Hypothetical protein GBS1413; structural genomics, PSI-2, protei structure initiative; 2.10A {Streptococcus agalactiae} SCOP: d.33.1.2
Probab=24.79 E-value=19 Score=25.86 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=23.8
Q ss_pred ccEEEecCCCCEEEEEeecCCCCCcchHHHHHHHh
Q 030471 140 IVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTL 174 (177)
Q Consensus 140 LI~gkIDq~~~~v~v~~~~~R~~~~~~~~~L~~~L 174 (177)
.|+|.|.|+.+...=..-.|-+|+.++|+.|..=|
T Consensus 67 viSG~IsQiv~i~~r~~~~~sd~~q~ev~~LsrPL 101 (128)
T 2o2a_A 67 VISGVISQMAHIQGRLINEPSEFSQDEVENLAAPL 101 (128)
T ss_dssp EEEEEEEEEEEEETCCCSCGGGSCHHHHHHHHHHH
T ss_pred EEEeeeeeeeeecccccCCcccCCHHHHHHHHHHH
Confidence 37888888554332223577889999999987543
No 203
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=24.46 E-value=56 Score=20.76 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.5
Q ss_pred ccChHHHHHHcCCCChHHHHHH
Q 030471 109 VLPYDELMEELDVTNVRELEDF 130 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~l 130 (177)
..+.++|++.++++ .++||..
T Consensus 48 ~~~l~eia~~l~~~-~~eve~v 68 (76)
T 2k9l_A 48 SKSVEEISDVLRCS-VEELEKV 68 (76)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHH
T ss_pred CCCHHHHHHHcCCC-HHHHHHH
Confidence 56899999999997 9999975
No 204
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=24.08 E-value=1.2e+02 Score=23.88 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeec
Q 030471 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAA 158 (177)
Q Consensus 95 lr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~ 158 (177)
...|-|.+.... +.+|+++||+.++++ ...+..|+= -+...|++.-. ..+++..+...
T Consensus 25 a~~lglf~~l~~-g~~t~~elA~~~~~~-~~~l~rlLr-~l~~~gl~~~~---~~~~y~~t~~s 82 (332)
T 3i53_A 25 AATLRVADHIAA-GHRTAAEIASAAGAH-ADSLDRLLR-HLVAVGLFTRD---GQGVYGLTEFG 82 (332)
T ss_dssp HHHHTHHHHHHT-TCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC---TTSBEEECTTG
T ss_pred HHHcChHHHHhc-CCCCHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEec---CCCeEEcCHhH
Confidence 333444443333 589999999999997 889999877 67788888742 24566666443
No 205
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=23.81 E-value=1.2e+02 Score=24.14 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=33.4
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
.+|+++||+.++++ ..-+..|+= -+...|+++-. .+++..+
T Consensus 56 ~~t~~elA~~~~~~-~~~l~rlLr-~L~~~gll~~~----~~~y~~t 96 (352)
T 3mcz_A 56 GRTPAEVAASFGMV-EGKAAILLH-ALAALGLLTKE----GDAFRNT 96 (352)
T ss_dssp CBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE----TTEEEEC
T ss_pred CCCHHHHHHHhCcC-hHHHHHHHH-HHHHCCCeEec----CCeeecC
Confidence 89999999999997 889999877 78889998753 3555544
No 206
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=23.52 E-value=65 Score=25.43 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHhhccc-cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 030471 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (177)
Q Consensus 96 r~LtllsL~-~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v 154 (177)
|-+.|+.+. ...+.++..+|++.++++ ...+=.++- .....|++.- |. ++...+
T Consensus 31 Ral~IL~~l~~~~~~ltl~eia~~lgl~-ksTv~RlL~-tL~~~G~v~~--~~-~~~Y~L 85 (275)
T 3mq0_A 31 RAVRILDLVAGSPRDLTAAELTRFLDLP-KSSAHGLLA-VMTELDLLAR--SA-DGTLRI 85 (275)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCC---CHHHHHH-HHHHTTSEEE--CT-TSEEEE
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--CC-CCcEEe
Confidence 335666543 345679999999999998 888888888 7888999873 33 355444
No 207
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=23.42 E-value=56 Score=20.36 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.2
Q ss_pred hHHHHHHcCCCChHHHHHHHH
Q 030471 112 YDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 112 ~~~I~~~l~i~~~~evE~lvI 132 (177)
-.+||+.|+++ +.+|+.|.=
T Consensus 31 r~~LA~~l~Lt-erQVkvWFq 50 (64)
T 1x2m_A 31 LEGLSKQLDWD-VRSIQRWFR 50 (64)
T ss_dssp HHHHHHHHCSC-HHHHHHHHH
T ss_pred HHHHHHHhCCC-HHHHHHHHH
Confidence 56799999997 999999865
No 208
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=23.23 E-value=1.1e+02 Score=22.71 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=32.2
Q ss_pred HHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 030471 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (177)
Q Consensus 93 ~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~ 142 (177)
+|-+.|-++ . .++.|-.+|++++|++ ..++...+= -.-+.|+|.
T Consensus 12 rk~~ILE~L---k-~G~~~t~~Iak~LGlS-hg~aq~~Ly-~LeREG~V~ 55 (165)
T 2vxz_A 12 RLRDILALL---A-DGCKTTSLIQQRLGLS-HGRAKALIY-VLEKEGRVT 55 (165)
T ss_dssp HHHHHHHHH---T-TCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSCE
T ss_pred HHHHHHHHH---H-hCCccHHHHHHHhCCc-HHHHHHHHH-HHHhcCceE
Confidence 344444444 4 7899999999999997 999986665 566677764
No 209
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.93 E-value=65 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=21.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai 136 (177)
.-.|+.+||+.++++ ...|...+- +|.
T Consensus 211 ~G~s~~EIA~~L~iS-~~TVk~~l~-ra~ 237 (258)
T 3clo_A 211 KGLSSKEIAATLYIS-VNTVNRHRQ-NIL 237 (258)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999998 888887665 543
No 210
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=22.73 E-value=1.9e+02 Score=19.90 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHHHhhccccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 030471 93 LKLKQLTVLTLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (177)
Q Consensus 93 ~Klr~LtllsL~~~~~~i-s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~g 143 (177)
..++..-+-.-...+..+ |-.++|+.++++ ...|-.-+- .....|+|..
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvS-r~tVr~Al~-~L~~~Gli~~ 60 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRIN-PATARNGLT-LLVEAGILYK 60 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCC-HHHHHHHHH-HHHTTTSEEE
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEE
Confidence 344443333333456677 899999999997 899988887 8888999865
No 211
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=22.48 E-value=86 Score=21.71 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=26.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcC
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTG 139 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~g 139 (177)
+-.|.++||+.-+++ ..+++.-+. +++..|
T Consensus 31 ~G~sleeIA~~R~L~-~~TI~~Hl~-~~v~~G 60 (122)
T 3iuo_A 31 RKVALDDIAVSHGLD-FPELLSEVE-TIVYSG 60 (122)
T ss_dssp TTCCHHHHHHHTTCC-HHHHHHHHH-HHHHTT
T ss_pred cCCCHHHHHHHcCCC-HHHHHHHHH-HHHHcC
Confidence 458899999999998 999999999 888877
No 212
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.45 E-value=2.4e+02 Score=20.78 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=39.9
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCcchHHHHHHH
Q 030471 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (177)
Q Consensus 111 s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~~~R~~~~~~~~~L~~~ 173 (177)
-|.+||++|+=+ .+-|=.++. .-++ ..|+||..++++.|+. .|+..+++.+-++
T Consensus 45 Nf~dIak~L~R~-p~hv~ky~~-~ELG---t~g~id~~~~rlii~G----~~~~~~i~~~L~~ 98 (157)
T 2e9h_A 45 NMVDVAKALNRP-PTYPTKYFG-CELG---AQTQFDVKNDRYIVNG----SHEANKLQDMLDG 98 (157)
T ss_dssp THHHHHHHTTSC-THHHHHHHH-HHHT---CCEEEETTTTEEEEEB----CCCHHHHHHHHHH
T ss_pred cHHHHHHHHCCC-HHHHHHHHH-HHhC---CceeecCCCCEEEEEe----eeCHHHHHHHHHH
Confidence 799999999987 777777777 4444 7899998888877763 2555666665544
No 213
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=22.26 E-value=1.8e+02 Score=19.37 Aligned_cols=50 Identities=4% Similarity=0.065 Sum_probs=36.0
Q ss_pred HHHHHHHhhccccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 93 LKLKQLTVLTLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 93 ~Klr~LtllsL~~~~~~i-s~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
..++..-.-.-...+..+ |-.++|+.++++ ...|-..+- .....|+|..+
T Consensus 16 ~~i~~~I~~g~~~~G~~lPs~~~La~~~~vS-r~tvr~al~-~L~~~Gli~~~ 66 (113)
T 3tqn_A 16 DKIVEAIIDGSYVEGEMIPSIRKISTEYQIN-PLTVSKAYQ-SLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 444443333233456667 899999999997 899988888 88889998654
No 214
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=22.13 E-value=74 Score=21.29 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=22.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHH
Q 030471 107 NKVLPYDELMEELDVTNVRELEDFLI 132 (177)
Q Consensus 107 ~~~is~~~I~~~l~i~~~~evE~lvI 132 (177)
.+.+|+.++|+..+|+ ..++..|+=
T Consensus 47 ~g~~s~~e~arry~Is-~s~i~~W~r 71 (95)
T 2jrt_A 47 HGLITEREALDRYSLS-EEEFALWRS 71 (95)
T ss_dssp TTSSCHHHHHHHTTCC-HHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCC-HHHHHHHHH
Confidence 5679999999999996 999999965
No 215
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=21.97 E-value=1.6e+02 Score=23.52 Aligned_cols=43 Identities=9% Similarity=-0.016 Sum_probs=34.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~ 156 (177)
+..|.++||+.++++ ..-++.|+= -+...|+++-. ++++..+.
T Consensus 63 ~~~t~~eLA~~~g~~-~~~l~rlLr-~L~~~gll~~~----~~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSV-PPRLEMLLE-TLRQMRVINLE----DGKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE----TTEEEECH
T ss_pred CCCCHHHHHHHhCcC-hHHHHHHHH-HHHhCCCeEee----CCeEecCH
Confidence 579999999999997 899999877 78889998764 34665553
No 216
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=21.53 E-value=45 Score=24.03 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=30.2
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 030471 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (177)
Q Consensus 109 ~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~ 151 (177)
.++..+|++.++++ ...|=..|= +....|+|.-.-|..+++
T Consensus 86 ~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR 126 (181)
T 2fbk_A 86 GLRPTELSALAAIS-GPSTSNRIV-RLLEKGLIERREDERDRR 126 (181)
T ss_dssp CBCHHHHHHHCSCC-SGGGSSHHH-HHHHHTSEECCC------
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCEEecCCCCCCC
Confidence 49999999999997 777777666 888899999887765544
No 217
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=21.28 E-value=2.7e+02 Score=21.06 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhccccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 030471 91 QVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (177)
Q Consensus 91 ~~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (177)
....+|..-+..-...+..++-.++++.++++ ..-|-.-+. ..-..|+|+-+
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVS-r~~VReAL~-~L~~~Glv~~~ 82 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVS-RMPVREALR-QLEAQSLLRVE 82 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 34566654454445567778999999999997 888877777 78889998754
No 218
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=21.13 E-value=1.3e+02 Score=23.44 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=35.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 030471 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (177)
Q Consensus 108 ~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~~~ 157 (177)
+..|.++||+.++++ ..-+..|+= -+...|+++- ..+++..+..
T Consensus 38 ~~~t~~ela~~~~~~-~~~l~r~L~-~L~~~g~l~~----~~~~y~~t~~ 81 (335)
T 2r3s_A 38 GIESSQSLAQKCQTS-ERGMRMLCD-YLVIIGFMTK----QAEGYRLTSD 81 (335)
T ss_dssp SEECHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE----ETTEEEECHH
T ss_pred CCCCHHHHHHHhCCC-chHHHHHHH-HHHhcCCeEe----cCCEEecCHH
Confidence 679999999999997 889999877 7888999974 2467776643
No 219
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=20.87 E-value=73 Score=23.97 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=28.3
Q ss_pred HHHHHHHHhhccccCCcccChHHHHHHcCCCChHHH
Q 030471 92 VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVREL 127 (177)
Q Consensus 92 ~~Klr~LtllsL~~~~~~is~~~I~~~l~i~~~~ev 127 (177)
.++-|+-.|+.+...++.++-+++++.++++ ...+
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs-~~Ti 43 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVS-IQTI 43 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSC-HHHH
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCC-HHHH
Confidence 3455777888888889999999999999996 5443
No 220
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=20.51 E-value=2.6e+02 Score=20.95 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=34.3
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 030471 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (177)
Q Consensus 106 ~~~~is~~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkIDq~~~~v~v~ 155 (177)
....+++.++|+.++++ ...|=..|= +.-..||+.-.-|...+.+.+|
T Consensus 24 ~~~~~s~s~aA~~L~is-q~avSr~I~-~LE~~~L~~R~~~~R~~~v~LT 71 (230)
T 3cta_A 24 NRAYLTSSKLADMLGIS-QQSASRIII-DLEKNGYITRTVTKRGQILNIT 71 (230)
T ss_dssp SEEECCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred cCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEEcCCeEEEEEC
Confidence 35678999999999997 777766655 6666888887777633334433
Done!