Query 030474
Match_columns 177
No_of_seqs 153 out of 1571
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 14:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3035 Isoamyl acetate-hydrol 100.0 6.6E-31 1.4E-35 202.2 13.0 166 1-171 5-200 (245)
2 cd01838 Isoamyl_acetate_hydrol 100.0 2.6E-27 5.6E-32 181.7 14.3 163 4-174 1-194 (199)
3 PRK10528 multifunctional acyl- 99.9 3.9E-26 8.4E-31 176.5 13.3 152 3-173 11-177 (191)
4 cd01839 SGNH_arylesterase_like 99.9 4.2E-26 9E-31 177.8 13.3 152 4-173 1-199 (208)
5 cd01836 FeeA_FeeB_like SGNH_hy 99.9 2.8E-25 6.1E-30 170.6 15.4 154 2-173 2-183 (191)
6 cd01821 Rhamnogalacturan_acety 99.9 1.5E-25 3.3E-30 173.4 13.7 158 3-173 1-192 (198)
7 cd01827 sialate_O-acetylestera 99.9 3.7E-25 8.1E-30 169.3 15.0 153 4-173 2-181 (188)
8 cd01822 Lysophospholipase_L1_l 99.9 2.4E-24 5.2E-29 162.9 14.0 151 4-173 2-170 (177)
9 cd01841 NnaC_like NnaC (CMP-Ne 99.9 1.9E-24 4.2E-29 163.6 12.7 147 3-173 1-168 (174)
10 cd04501 SGNH_hydrolase_like_4 99.9 5.5E-24 1.2E-28 162.3 13.4 150 3-173 1-177 (183)
11 cd01835 SGNH_hydrolase_like_3 99.9 5.9E-24 1.3E-28 163.6 13.7 160 3-173 2-187 (193)
12 cd01825 SGNH_hydrolase_peri1 S 99.9 5.2E-24 1.1E-28 162.7 12.9 149 4-174 1-180 (189)
13 cd01832 SGNH_hydrolase_like_1 99.9 2.3E-23 5E-28 158.9 14.0 152 4-174 1-181 (185)
14 cd01830 XynE_like SGNH_hydrola 99.9 4.7E-23 1E-27 160.4 15.4 160 4-173 1-198 (204)
15 cd01834 SGNH_hydrolase_like_2 99.9 2.6E-23 5.6E-28 158.5 12.1 155 3-173 2-186 (191)
16 cd04502 SGNH_hydrolase_like_7 99.9 5.1E-23 1.1E-27 155.7 12.8 146 4-173 1-165 (171)
17 cd01820 PAF_acetylesterase_lik 99.9 1.3E-22 2.7E-27 159.2 14.2 152 3-173 33-204 (214)
18 cd04506 SGNH_hydrolase_YpmR_li 99.9 6.4E-23 1.4E-27 159.1 11.9 164 4-173 1-199 (204)
19 cd01844 SGNH_hydrolase_like_6 99.9 2.3E-22 5E-27 153.2 12.6 144 4-172 1-170 (177)
20 cd01828 sialate_O-acetylestera 99.9 4.6E-22 1E-26 150.0 14.1 143 5-173 2-162 (169)
21 cd01833 XynB_like SGNH_hydrola 99.9 2.3E-21 4.9E-26 144.5 11.6 133 4-173 2-151 (157)
22 cd01831 Endoglucanase_E_like E 99.8 7.6E-19 1.7E-23 132.8 13.5 135 4-172 1-161 (169)
23 cd01829 SGNH_hydrolase_peri2 S 99.8 7.1E-19 1.5E-23 135.7 13.2 154 4-173 1-192 (200)
24 PF13472 Lipase_GDSL_2: GDSL-l 99.8 9.8E-19 2.1E-23 130.3 9.5 151 6-168 1-176 (179)
25 cd01823 SEST_like SEST_like. A 99.8 6.8E-18 1.5E-22 135.5 12.8 117 4-121 2-156 (259)
26 cd01840 SGNH_hydrolase_yrhL_li 99.8 5.4E-18 1.2E-22 126.2 10.3 136 4-173 1-144 (150)
27 cd00229 SGNH_hydrolase SGNH_hy 99.7 2.3E-16 4.9E-21 116.7 12.2 156 5-174 1-183 (187)
28 COG2755 TesA Lysophospholipase 99.7 1.3E-15 2.8E-20 119.0 11.9 154 4-172 10-201 (216)
29 PF14606 Lipase_GDSL_3: GDSL-l 99.6 4.7E-15 1E-19 113.0 9.5 144 2-173 1-171 (178)
30 cd01824 Phospholipase_B_like P 99.5 6E-14 1.3E-18 115.1 11.2 87 34-122 82-175 (288)
31 PF00657 Lipase_GDSL: GDSL-lik 99.4 9.8E-14 2.1E-18 108.0 3.9 159 5-173 1-232 (234)
32 cd01826 acyloxyacyl_hydrolase_ 99.3 5.7E-12 1.2E-16 103.1 8.9 85 36-121 94-179 (305)
33 cd01846 fatty_acyltransferase_ 99.0 1.7E-09 3.7E-14 87.2 10.1 119 4-123 1-157 (270)
34 COG2845 Uncharacterized protei 98.8 1.7E-08 3.7E-13 82.7 6.4 114 2-126 116-241 (354)
35 cd01842 SGNH_hydrolase_like_5 98.5 1.2E-06 2.7E-11 66.6 9.5 102 62-174 48-177 (183)
36 KOG3670 Phospholipase [Lipid t 98.3 1.7E-06 3.7E-11 72.9 7.6 85 38-122 151-242 (397)
37 PF04311 DUF459: Protein of un 97.7 0.00042 9.1E-09 57.9 10.3 131 2-141 37-189 (327)
38 PF13839 PC-Esterase: GDSL/SGN 97.7 0.00032 6.9E-09 55.9 8.6 60 64-123 100-166 (263)
39 cd01847 Triacylglycerol_lipase 97.6 0.0004 8.7E-09 56.5 8.2 58 64-122 102-166 (281)
40 PRK15381 pathogenicity island 97.6 0.00022 4.8E-09 61.4 6.7 109 3-122 143-286 (408)
41 cd01837 SGNH_plant_lipase_like 97.5 0.00032 7E-09 58.0 6.8 58 64-122 128-189 (315)
42 PF08885 GSCFA: GSCFA family; 95.6 0.029 6.3E-07 45.4 5.4 62 63-124 100-181 (251)
43 PF04914 DltD_C: DltD C-termin 91.7 1.1 2.3E-05 32.7 6.9 67 95-168 35-116 (130)
44 cd02067 B12-binding B12 bindin 91.5 3.3 7.3E-05 28.9 9.3 74 26-124 19-94 (119)
45 PF13380 CoA_binding_2: CoA bi 87.6 7.9 0.00017 27.2 10.4 100 3-140 1-106 (116)
46 PLN03156 GDSL esterase/lipase; 83.1 3.8 8.2E-05 34.7 6.1 56 66-122 159-220 (351)
47 PF07611 DUF1574: Protein of u 81.8 3.5 7.6E-05 35.0 5.3 69 2-78 63-134 (345)
48 cd02070 corrinoid_protein_B12- 78.9 17 0.00038 28.0 8.1 66 31-121 108-175 (201)
49 PRK08154 anaerobic benzoate ca 76.9 11 0.00023 31.2 6.8 50 92-141 114-163 (309)
50 PF02310 B12-binding: B12 bind 76.9 14 0.0003 25.5 6.5 76 25-125 19-95 (121)
51 TIGR00067 glut_race glutamate 75.8 27 0.00059 28.0 8.7 87 36-141 3-90 (251)
52 COG1922 WecG Teichoic acid bio 74.7 21 0.00045 29.0 7.6 106 33-163 108-226 (253)
53 KOG1388 Attractin and platelet 73.9 1.2 2.6E-05 35.1 0.3 76 37-125 54-130 (217)
54 PF06935 DUF1284: Protein of u 71.8 7.6 0.00016 26.9 4.0 26 92-118 4-29 (103)
55 PRK00955 hypothetical protein; 71.5 35 0.00077 31.3 9.1 104 4-122 16-134 (620)
56 PRK03670 competence damage-ind 70.9 8.9 0.00019 31.0 4.7 69 1-74 1-70 (252)
57 PRK06524 biotin carboxylase-li 70.4 7 0.00015 34.8 4.3 82 90-173 11-92 (493)
58 cd02071 MM_CoA_mut_B12_BD meth 67.4 40 0.00088 23.6 9.3 66 31-121 25-91 (122)
59 PRK00066 ldh L-lactate dehydro 66.8 20 0.00043 29.8 6.2 50 63-120 72-124 (315)
60 PRK02261 methylaspartate mutas 66.2 48 0.001 24.1 7.6 85 31-140 29-116 (137)
61 PRK00865 glutamate racemase; P 65.9 61 0.0013 26.0 8.7 90 33-141 7-96 (261)
62 cd01779 Myosin_IXb_RA ubitquit 65.4 1.6 3.4E-05 30.0 -0.5 16 158-173 88-103 (105)
63 PF04321 RmlD_sub_bind: RmlD s 64.0 12 0.00025 30.5 4.2 97 3-119 1-101 (286)
64 cd00300 LDH_like L-lactate deh 63.5 17 0.00037 29.9 5.1 50 63-120 65-117 (300)
65 PRK05086 malate dehydrogenase; 63.4 24 0.00052 29.3 6.0 51 63-122 68-121 (312)
66 COG5012 Predicted cobalamin bi 63.4 34 0.00073 27.3 6.4 72 31-127 130-202 (227)
67 COG5426 Uncharacterized membra 62.8 33 0.00072 26.9 6.2 74 1-81 1-87 (254)
68 COG2201 CheB Chemotaxis respon 62.7 76 0.0017 27.0 8.9 81 2-120 1-83 (350)
69 PF00056 Ldh_1_N: lactate/mala 61.9 20 0.00043 26.1 4.7 50 63-120 68-120 (141)
70 PF00994 MoCF_biosynth: Probab 61.5 4.9 0.00011 29.2 1.4 64 5-74 2-66 (144)
71 PF00072 Response_reg: Respons 61.2 24 0.00052 23.3 4.8 41 63-122 42-82 (112)
72 PLN00135 malate dehydrogenase 61.0 30 0.00064 28.8 6.1 48 63-118 57-108 (309)
73 TIGR02026 BchE magnesium-proto 60.0 47 0.001 29.4 7.6 42 63-122 62-103 (497)
74 PTZ00325 malate dehydrogenase; 59.6 29 0.00063 29.0 5.9 51 63-122 75-128 (321)
75 TIGR01771 L-LDH-NAD L-lactate 58.6 29 0.00062 28.7 5.6 50 63-120 63-115 (299)
76 COG1004 Ugd Predicted UDP-gluc 58.4 37 0.00079 29.5 6.3 89 63-164 75-165 (414)
77 cd00885 cinA Competence-damage 58.0 17 0.00038 27.4 3.9 65 4-74 3-68 (170)
78 KOG1344 Predicted histone deac 58.0 27 0.00058 28.3 5.0 56 62-121 246-301 (324)
79 COG0123 AcuC Deacetylases, inc 57.6 32 0.0007 29.1 5.8 55 62-120 237-291 (340)
80 PRK10100 DNA-binding transcrip 57.0 24 0.00052 27.6 4.7 40 64-121 52-91 (216)
81 cd05291 HicDH_like L-2-hydroxy 56.4 38 0.00082 27.9 6.0 49 63-119 67-118 (306)
82 PLN02629 powdery mildew resist 56.4 7.4 0.00016 33.5 1.8 59 64-122 205-275 (387)
83 cd05013 SIS_RpiR RpiR-like pro 56.1 34 0.00074 23.6 5.1 26 96-123 74-99 (139)
84 PRK10128 2-keto-3-deoxy-L-rham 56.1 18 0.00039 29.5 4.0 55 48-109 156-210 (267)
85 COG1058 CinA Predicted nucleot 55.4 27 0.00058 28.4 4.8 68 1-74 2-70 (255)
86 COG0796 MurI Glutamate racemas 55.3 1.2E+02 0.0025 25.0 9.3 89 33-140 7-95 (269)
87 smart00852 MoCF_biosynth Proba 55.1 34 0.00073 24.4 4.9 65 5-74 2-67 (135)
88 PRK15057 UDP-glucose 6-dehydro 55.0 99 0.0021 26.5 8.5 51 63-124 72-123 (388)
89 KOG0734 AAA+-type ATPase conta 54.8 32 0.00069 31.4 5.5 50 91-141 309-367 (752)
90 PF00850 Hist_deacetyl: Histon 54.3 29 0.00063 28.7 5.0 87 35-125 209-297 (311)
91 PF02896 PEP-utilizers_C: PEP- 53.4 27 0.00058 28.9 4.6 54 69-124 200-261 (293)
92 cd05293 LDH_1 A subgroup of L- 53.1 39 0.00085 28.1 5.6 50 63-120 70-122 (312)
93 TIGR02370 pyl_corrinoid methyl 53.1 1E+02 0.0022 23.7 8.0 68 31-124 110-179 (197)
94 TIGR00177 molyb_syn molybdenum 53.0 27 0.00058 25.4 4.2 66 4-74 4-76 (144)
95 PF11968 DUF3321: Putative met 52.9 50 0.0011 26.2 5.8 91 61-175 101-193 (219)
96 PLN02199 shikimate kinase 52.8 56 0.0012 27.3 6.4 44 98-141 89-132 (303)
97 cd01338 MDH_choloroplast_like 52.8 51 0.0011 27.5 6.3 49 62-118 76-128 (322)
98 PF05872 DUF853: Bacterial pro 52.8 57 0.0012 29.0 6.6 55 59-124 249-303 (502)
99 TIGR03239 GarL 2-dehydro-3-deo 52.0 24 0.00052 28.4 4.1 55 48-109 149-203 (249)
100 cd02069 methionine_synthase_B1 51.9 1.1E+02 0.0025 23.8 8.0 69 31-125 114-182 (213)
101 PLN02602 lactate dehydrogenase 51.8 45 0.00097 28.3 5.8 50 63-120 104-156 (350)
102 PRK13793 nicotinamide-nucleoti 51.4 64 0.0014 25.1 6.2 63 63-133 29-92 (196)
103 PRK10558 alpha-dehydro-beta-de 51.0 27 0.00059 28.2 4.2 43 65-109 168-210 (256)
104 PLN02623 pyruvate kinase 50.9 71 0.0015 29.1 7.2 40 69-118 344-383 (581)
105 PF09370 TIM-br_sig_trns: TIM- 50.9 76 0.0016 26.0 6.7 66 63-132 169-234 (268)
106 PRK11557 putative DNA-binding 50.8 39 0.00084 27.1 5.2 28 95-124 188-215 (278)
107 cd01337 MDH_glyoxysomal_mitoch 50.6 53 0.0012 27.3 6.0 50 63-120 67-119 (310)
108 PF03808 Glyco_tran_WecB: Glyc 50.5 1E+02 0.0023 23.0 7.8 60 96-157 88-157 (172)
109 TIGR01763 MalateDH_bact malate 50.4 41 0.00089 27.8 5.3 50 63-120 68-120 (305)
110 PF01964 ThiC: ThiC family; I 50.0 93 0.002 27.1 7.4 81 51-140 202-288 (420)
111 TIGR02667 moaB_proteo molybden 50.0 36 0.00078 25.4 4.5 65 4-74 8-73 (163)
112 PRK15029 arginine decarboxylas 49.8 1E+02 0.0022 29.2 8.2 88 4-120 2-94 (755)
113 PF02698 DUF218: DUF218 domain 49.6 62 0.0013 23.3 5.7 47 91-138 19-69 (155)
114 KOG0731 AAA+-type ATPase conta 49.4 42 0.00091 31.6 5.6 50 90-140 315-373 (774)
115 PRK00549 competence damage-ind 48.6 36 0.00077 29.5 4.8 68 1-74 1-69 (414)
116 COG1377 FlhB Flagellar biosynt 48.5 21 0.00047 30.4 3.4 53 93-145 243-319 (363)
117 TIGR00640 acid_CoA_mut_C methy 48.1 1E+02 0.0022 22.2 8.7 71 26-121 22-94 (132)
118 PRK05458 guanosine 5'-monophos 47.7 51 0.0011 27.7 5.5 59 36-116 87-145 (326)
119 smart00851 MGS MGS-like domain 47.5 41 0.00089 22.1 4.1 39 100-140 46-89 (90)
120 PLN02674 adenylate kinase 47.4 62 0.0014 26.0 5.7 31 111-141 31-61 (244)
121 TIGR03471 HpnJ hopanoid biosyn 47.3 1.2E+02 0.0025 26.6 7.9 72 24-123 38-109 (472)
122 TIGR01772 MDH_euk_gproteo mala 46.7 58 0.0013 27.1 5.7 50 63-120 66-118 (312)
123 TIGR01759 MalateDH-SF1 malate 46.5 70 0.0015 26.8 6.2 51 63-122 78-132 (323)
124 cd04121 Rab40 Rab40 subfamily. 46.5 50 0.0011 25.1 4.9 63 63-141 77-146 (189)
125 PF08759 DUF1792: Domain of un 46.1 52 0.0011 26.2 5.0 73 46-124 102-180 (225)
126 cd00886 MogA_MoaB MogA_MoaB fa 45.9 62 0.0013 23.7 5.2 67 4-74 4-71 (152)
127 PRK00131 aroK shikimate kinase 45.8 49 0.0011 23.9 4.7 32 110-141 3-34 (175)
128 cd02068 radical_SAM_B12_BD B12 45.2 30 0.00066 24.2 3.3 45 63-125 38-82 (127)
129 PRK10494 hypothetical protein; 45.1 1.6E+02 0.0036 23.7 9.6 73 44-120 57-130 (259)
130 PF02142 MGS: MGS-like domain 44.8 26 0.00056 23.4 2.8 39 100-140 51-94 (95)
131 PRK05096 guanosine 5'-monophos 44.6 43 0.00092 28.5 4.5 49 48-116 108-156 (346)
132 KOG0084 GTPase Rab1/YPT1, smal 44.5 1.5E+02 0.0033 23.2 7.9 121 4-141 11-151 (205)
133 cd00704 MDH Malate dehydrogena 44.0 80 0.0017 26.4 6.1 48 63-118 75-126 (323)
134 PRK13352 thiamine biosynthesis 43.8 55 0.0012 28.6 5.1 97 68-170 220-328 (431)
135 TIGR00200 cinA_nterm competenc 43.7 45 0.00099 29.0 4.7 67 1-74 1-69 (413)
136 PF06057 VirJ: Bacterial virul 43.3 37 0.0008 26.4 3.7 33 88-120 44-76 (192)
137 TIGR01756 LDH_protist lactate 42.8 76 0.0017 26.4 5.8 51 63-122 59-113 (313)
138 COG2333 ComEC Predicted hydrol 42.6 1.6E+02 0.0035 24.4 7.6 62 3-78 183-245 (293)
139 PRK03692 putative UDP-N-acetyl 42.3 41 0.00089 27.0 4.0 65 99-165 147-224 (243)
140 PF06866 DUF1256: Protein of u 42.3 1E+02 0.0023 23.3 5.9 55 64-118 24-93 (163)
141 cd01339 LDH-like_MDH L-lactate 42.1 95 0.0021 25.3 6.2 49 63-119 65-116 (300)
142 cd00758 MoCF_BD MoCF_BD: molyb 42.0 62 0.0013 23.0 4.6 65 4-74 3-68 (133)
143 TIGR01579 MiaB-like-C MiaB-lik 41.8 83 0.0018 27.0 6.1 47 62-123 31-77 (414)
144 COG2197 CitB Response regulato 41.8 54 0.0012 25.4 4.5 41 63-122 45-85 (211)
145 cd02072 Glm_B12_BD B12 binding 41.7 1.3E+02 0.0029 21.7 7.9 73 31-128 25-98 (128)
146 TIGR00696 wecB_tagA_cpsF bacte 41.6 1.5E+02 0.0034 22.4 8.4 64 99-164 90-166 (177)
147 cd06259 YdcF-like YdcF-like. Y 41.3 1.3E+02 0.0028 21.4 7.8 44 92-136 17-64 (150)
148 PF07611 DUF1574: Protein of u 41.1 66 0.0014 27.3 5.2 48 92-141 248-309 (345)
149 COG4753 Response regulator con 41.0 66 0.0014 28.6 5.3 59 32-119 26-84 (475)
150 cd05290 LDH_3 A subgroup of L- 40.6 1E+02 0.0022 25.5 6.2 50 63-120 67-121 (307)
151 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 40.5 1.8E+02 0.0038 22.8 9.7 42 63-118 71-112 (222)
152 PRK03673 hypothetical protein; 40.5 51 0.0011 28.5 4.5 68 1-74 2-70 (396)
153 PRK05442 malate dehydrogenase; 40.4 1.1E+02 0.0023 25.7 6.3 51 63-122 79-133 (326)
154 PRK01215 competence damage-ind 39.8 56 0.0012 26.6 4.4 65 4-74 7-72 (264)
155 cd01422 MGS Methylglyoxal synt 39.8 83 0.0018 22.0 4.8 40 99-140 60-105 (115)
156 PLN00106 malate dehydrogenase 39.5 84 0.0018 26.3 5.6 52 63-123 85-139 (323)
157 PF03328 HpcH_HpaI: HpcH/HpaI 39.3 1.3E+02 0.0028 23.3 6.3 55 47-108 129-183 (221)
158 cd00650 LDH_MDH_like NAD-depen 39.1 80 0.0017 25.2 5.3 51 63-118 69-119 (263)
159 TIGR01064 pyruv_kin pyruvate k 39.1 99 0.0021 27.4 6.2 40 69-118 238-277 (473)
160 cd05294 LDH-like_MDH_nadp A la 38.8 95 0.0021 25.6 5.8 49 63-119 71-122 (309)
161 PF06418 CTP_synth_N: CTP synt 38.8 81 0.0018 25.9 5.1 59 49-122 121-179 (276)
162 TIGR00190 thiC thiamine biosyn 38.8 2.1E+02 0.0046 25.0 7.8 97 68-170 217-325 (423)
163 PRK03604 moaC bifunctional mol 38.6 63 0.0014 27.0 4.6 65 5-74 160-225 (312)
164 PRK13947 shikimate kinase; Pro 38.5 59 0.0013 23.7 4.2 29 113-141 3-31 (171)
165 PRK11177 phosphoenolpyruvate-p 38.3 51 0.0011 30.0 4.3 55 67-123 446-508 (575)
166 TIGR01305 GMP_reduct_1 guanosi 38.2 68 0.0015 27.2 4.8 47 47-113 106-152 (343)
167 PF04174 CP_ATPgrasp_1: A circ 38.1 42 0.00091 28.3 3.5 51 90-140 121-172 (330)
168 TIGR01758 MDH_euk_cyt malate d 38.1 1.2E+02 0.0025 25.4 6.2 51 63-122 74-128 (324)
169 PTZ00346 histone deacetylase; 38.0 47 0.001 29.1 3.9 49 62-118 266-314 (429)
170 cd01336 MDH_cytoplasmic_cytoso 37.9 1.2E+02 0.0026 25.3 6.3 48 63-118 77-128 (325)
171 TIGR01574 miaB-methiolase tRNA 37.8 88 0.0019 27.2 5.6 50 62-123 35-84 (438)
172 cd03412 CbiK_N Anaerobic cobal 37.6 1E+02 0.0023 21.8 5.2 36 67-117 3-38 (127)
173 PF03629 DUF303: Domain of unk 37.6 1E+02 0.0022 24.4 5.6 48 64-123 143-192 (255)
174 TIGR01552 phd_fam prevent-host 37.3 67 0.0014 18.7 3.5 27 89-118 2-28 (52)
175 cd04795 SIS SIS domain. SIS (S 37.1 19 0.00042 22.9 1.2 21 96-118 61-81 (87)
176 KOG0393 Ras-related small GTPa 37.1 98 0.0021 24.2 5.2 42 63-118 75-116 (198)
177 KOG0078 GTP-binding protein SE 37.0 1.4E+02 0.003 23.6 6.0 52 90-141 95-153 (207)
178 PTZ00063 histone deacetylase; 36.8 51 0.0011 28.9 4.0 50 62-119 248-297 (436)
179 TIGR01417 PTS_I_fam phosphoeno 36.7 1.1E+02 0.0024 27.8 6.2 57 67-125 445-509 (565)
180 TIGR03772 anch_rpt_subst ancho 36.6 93 0.002 27.7 5.6 44 95-140 406-449 (479)
181 PF03652 UPF0081: Uncharacteri 36.5 31 0.00068 25.0 2.3 57 49-119 39-95 (135)
182 PF10561 UPF0565: Uncharacteri 36.5 48 0.001 27.6 3.6 53 63-122 31-89 (303)
183 PRK10161 transcriptional regul 36.4 1.2E+02 0.0027 22.6 5.8 13 1-13 1-13 (229)
184 cd06533 Glyco_transf_WecG_TagA 36.3 1.8E+02 0.0039 21.7 8.0 55 101-157 91-155 (171)
185 COG0465 HflB ATP-dependent Zn 36.2 89 0.0019 28.6 5.5 50 91-141 155-213 (596)
186 PRK03839 putative kinase; Prov 36.2 65 0.0014 23.8 4.1 29 113-141 2-30 (180)
187 PRK11543 gutQ D-arabinose 5-ph 36.2 1.5E+02 0.0033 24.2 6.6 27 95-123 102-128 (321)
188 COG3967 DltE Short-chain dehyd 36.2 1E+02 0.0022 24.7 5.1 68 22-118 17-85 (245)
189 PRK10239 2-amino-4-hydroxy-6-h 35.5 92 0.002 23.3 4.7 37 67-119 3-39 (159)
190 PRK12354 carbamate kinase; Rev 35.1 1.3E+02 0.0028 25.2 5.9 46 67-117 2-47 (307)
191 PF00919 UPF0004: Uncharacteri 34.8 1.5E+02 0.0032 20.2 5.8 48 62-124 34-82 (98)
192 PRK13949 shikimate kinase; Pro 34.6 73 0.0016 23.7 4.1 29 113-141 3-31 (169)
193 PF03808 Glyco_tran_WecB: Glyc 34.3 1.3E+02 0.0029 22.4 5.5 31 96-126 59-89 (172)
194 COG4030 Uncharacterized protei 34.3 20 0.00043 29.0 1.0 27 98-124 269-295 (315)
195 PRK12773 flhB flagellar biosyn 34.2 61 0.0013 29.8 4.1 53 93-145 534-611 (646)
196 PF00071 Ras: Ras family; Int 34.0 85 0.0018 22.2 4.3 65 63-142 70-141 (162)
197 COG0422 ThiC Thiamine biosynth 34.0 1.2E+02 0.0026 26.3 5.6 97 68-170 218-326 (432)
198 cd05008 SIS_GlmS_GlmD_1 SIS (S 34.0 35 0.00076 23.6 2.2 27 96-124 60-86 (126)
199 PRK09279 pyruvate phosphate di 33.7 75 0.0016 30.5 4.8 30 92-121 807-836 (879)
200 PTZ00088 adenylate kinase 1; P 33.7 72 0.0016 25.2 4.1 30 112-141 7-36 (229)
201 TIGR01306 GMP_reduct_2 guanosi 33.5 1.8E+02 0.004 24.4 6.6 47 45-111 91-137 (321)
202 PLN00112 malate dehydrogenase 33.4 1.1E+02 0.0023 27.0 5.4 49 63-119 175-227 (444)
203 TIGR03127 RuMP_HxlB 6-phospho 33.1 90 0.0019 23.2 4.4 29 94-124 84-112 (179)
204 COG0703 AroK Shikimate kinase 32.9 74 0.0016 24.3 3.8 31 111-141 2-32 (172)
205 TIGR03026 NDP-sugDHase nucleot 32.7 2E+02 0.0043 24.6 7.0 51 63-123 75-125 (411)
206 cd05292 LDH_2 A subgroup of L- 32.6 1.1E+02 0.0025 25.1 5.3 52 63-119 66-117 (308)
207 PRK14328 (dimethylallyl)adenos 32.6 1.1E+02 0.0025 26.5 5.5 50 62-123 36-85 (439)
208 cd06844 STAS Sulphate Transpor 32.6 1.1E+02 0.0023 20.3 4.4 27 94-122 56-82 (100)
209 cd03113 CTGs CTP synthetase (C 32.5 1.1E+02 0.0024 24.8 5.0 48 62-121 130-177 (255)
210 PF01085 HH_signal: Hedgehog a 32.5 1.3E+02 0.0029 22.6 5.0 68 38-118 31-102 (160)
211 KOG0094 GTPase Rab6/YPT6/Ryh1, 32.5 2.5E+02 0.0055 22.2 6.9 76 49-140 80-163 (221)
212 PF01083 Cutinase: Cutinase; 32.4 75 0.0016 24.0 3.9 31 90-120 59-89 (179)
213 COG2179 Predicted hydrolase of 32.3 1.6E+02 0.0035 22.5 5.5 42 95-141 48-89 (175)
214 PF05496 RuvB_N: Holliday junc 32.3 1.9E+02 0.0041 23.2 6.2 52 89-140 27-79 (233)
215 PRK11061 fused phosphoenolpyru 32.3 56 0.0012 30.7 3.7 52 68-121 613-672 (748)
216 KOG1169 Diacylglycerol kinase 32.2 1.1E+02 0.0024 28.2 5.4 45 35-80 326-371 (634)
217 PF14639 YqgF: Holliday-juncti 32.2 28 0.00061 25.8 1.4 54 48-118 50-105 (150)
218 KOG2884 26S proteasome regulat 31.9 2.7E+02 0.0059 22.4 8.1 23 153-175 165-187 (259)
219 PRK04940 hypothetical protein; 31.9 1E+02 0.0023 23.6 4.6 67 4-80 61-139 (180)
220 TIGR02154 PhoB phosphate regul 31.7 2.1E+02 0.0045 21.0 7.1 13 1-13 1-13 (226)
221 PRK14725 pyruvate kinase; Prov 31.7 1E+02 0.0022 28.3 5.1 60 47-118 483-542 (608)
222 PRK09417 mogA molybdenum cofac 31.6 1.2E+02 0.0025 23.5 4.9 66 4-74 7-76 (193)
223 PRK14532 adenylate kinase; Pro 31.4 89 0.0019 23.2 4.2 29 113-141 2-30 (188)
224 TIGR01828 pyru_phos_dikin pyru 31.2 81 0.0018 30.2 4.6 32 92-123 801-832 (856)
225 PRK14329 (dimethylallyl)adenos 31.0 1.6E+02 0.0035 25.9 6.2 78 34-123 26-107 (467)
226 KOG0081 GTPase Rab27, small G 31.0 2E+02 0.0044 22.0 5.8 52 90-141 101-160 (219)
227 COG2403 Predicted GTPase [Gene 30.9 98 0.0021 26.9 4.6 56 63-118 223-306 (449)
228 PF01359 Transposase_1: Transp 30.7 1.2E+02 0.0026 19.9 4.2 46 66-111 31-76 (81)
229 TIGR02886 spore_II_AA anti-sig 30.7 1.3E+02 0.0028 20.0 4.5 28 95-124 57-84 (106)
230 PRK14331 (dimethylallyl)adenos 30.3 1.3E+02 0.0027 26.2 5.4 48 62-121 35-82 (437)
231 PF05762 VWA_CoxE: VWA domain 30.2 1.9E+02 0.0042 22.5 6.0 22 98-121 168-189 (222)
232 cd02065 B12-binding_like B12 b 29.8 1.8E+02 0.0039 19.7 5.8 70 31-126 25-95 (125)
233 PRK00625 shikimate kinase; Pro 29.7 1E+02 0.0022 23.2 4.2 29 113-141 2-30 (173)
234 PF04413 Glycos_transf_N: 3-De 29.6 56 0.0012 24.9 2.8 37 89-126 29-65 (186)
235 PF06180 CbiK: Cobalt chelatas 29.6 56 0.0012 26.6 2.9 36 67-117 3-39 (262)
236 PRK14530 adenylate kinase; Pro 29.4 1E+02 0.0022 23.7 4.3 30 112-141 4-33 (215)
237 PF10686 DUF2493: Protein of u 29.3 1.6E+02 0.0034 18.8 6.6 42 98-140 20-61 (71)
238 PRK06223 malate dehydrogenase; 29.2 1.3E+02 0.0028 24.5 5.1 50 63-120 69-121 (307)
239 PRK14333 (dimethylallyl)adenos 29.2 1.3E+02 0.0028 26.2 5.3 78 33-122 8-89 (448)
240 TIGR00361 ComEC_Rec2 DNA inter 29.1 1.8E+02 0.004 26.8 6.5 62 3-78 575-637 (662)
241 TIGR02640 gas_vesic_GvpN gas v 29.0 2.1E+02 0.0046 22.8 6.2 46 92-140 5-50 (262)
242 PRK14531 adenylate kinase; Pro 29.0 1E+02 0.0022 23.0 4.1 29 113-141 4-32 (183)
243 PF09547 Spore_IV_A: Stage IV 29.0 3.3E+02 0.0072 24.2 7.5 53 88-140 159-213 (492)
244 PRK10046 dpiA two-component re 28.9 2.6E+02 0.0057 21.3 7.4 20 101-120 68-87 (225)
245 COG0563 Adk Adenylate kinase a 28.9 99 0.0021 23.4 4.0 29 113-141 2-30 (178)
246 PF14331 ImcF-related_N: ImcF- 28.7 1.1E+02 0.0023 24.8 4.5 55 62-117 23-77 (266)
247 cd01020 TroA_b Metal binding p 28.7 1.8E+02 0.0039 23.2 5.7 45 95-141 192-237 (264)
248 PF00390 malic: Malic enzyme, 28.7 73 0.0016 24.6 3.2 46 68-113 113-163 (182)
249 PF00478 IMPDH: IMP dehydrogen 28.7 78 0.0017 27.0 3.7 21 96-116 134-154 (352)
250 PF09949 DUF2183: Uncharacteri 28.6 1.7E+02 0.0037 20.0 4.8 38 97-134 50-87 (100)
251 PRK13946 shikimate kinase; Pro 28.6 1.1E+02 0.0024 22.8 4.3 31 111-141 10-40 (184)
252 PF02604 PhdYeFM_antitox: Anti 28.3 79 0.0017 19.8 2.9 28 89-118 4-31 (75)
253 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 28.2 1.6E+02 0.0034 22.0 5.1 42 63-118 75-116 (182)
254 TIGR01757 Malate-DH_plant mala 28.2 1.6E+02 0.0034 25.5 5.5 48 63-118 119-170 (387)
255 COG0039 Mdh Malate/lactate deh 28.1 2.3E+02 0.0051 23.7 6.4 50 63-120 68-120 (313)
256 COG2308 Uncharacterized conser 28.1 1E+02 0.0023 27.2 4.4 49 92-140 200-250 (488)
257 PLN02285 methionyl-tRNA formyl 28.1 1.3E+02 0.0029 25.2 5.0 45 95-139 19-71 (334)
258 PRK14326 (dimethylallyl)adenos 28.0 2E+02 0.0044 25.6 6.4 79 33-123 15-97 (502)
259 TIGR02311 HpaI 2,4-dihydroxyhe 28.0 87 0.0019 25.1 3.7 55 48-109 150-204 (249)
260 PRK10017 colanic acid biosynth 28.0 87 0.0019 27.3 4.0 30 95-124 17-46 (426)
261 PF02630 SCO1-SenC: SCO1/SenC; 27.9 2.3E+02 0.005 21.1 5.9 51 64-124 51-101 (174)
262 cd01424 MGS_CPS_II Methylglyox 27.9 1.8E+02 0.0039 19.7 4.9 39 100-140 58-99 (110)
263 cd01017 AdcA Metal binding pro 27.8 1.6E+02 0.0034 23.8 5.3 42 95-140 206-247 (282)
264 cd07041 STAS_RsbR_RsbS_like Su 27.7 1E+02 0.0022 20.6 3.6 45 63-122 39-84 (109)
265 PRK13948 shikimate kinase; Pro 27.6 1.4E+02 0.0031 22.6 4.7 32 110-141 9-40 (182)
266 cd00532 MGS-like MGS-like doma 27.5 1.6E+02 0.0035 20.2 4.7 39 100-140 58-103 (112)
267 cd04131 Rnd Rnd subfamily. Th 27.5 2.4E+02 0.0051 20.9 5.9 42 63-118 71-112 (178)
268 PF07755 DUF1611: Protein of u 27.5 2.2E+02 0.0048 23.8 6.1 53 88-141 234-291 (301)
269 PRK13352 thiamine biosynthesis 27.4 1.6E+02 0.0035 25.8 5.4 50 87-140 268-325 (431)
270 PF13207 AAA_17: AAA domain; P 27.3 1E+02 0.0023 20.8 3.7 29 113-141 1-29 (121)
271 TIGR01351 adk adenylate kinase 27.2 95 0.0021 23.7 3.8 29 113-141 1-29 (210)
272 cd05005 SIS_PHI Hexulose-6-pho 27.0 1.6E+02 0.0035 21.8 4.9 33 90-124 83-115 (179)
273 PTZ00451 dephospho-CoA kinase; 26.9 1.2E+02 0.0026 24.3 4.4 55 43-111 159-214 (244)
274 TIGR01854 lipid_A_lpxH UDP-2,3 26.9 3E+02 0.0066 21.3 7.5 85 64-164 30-114 (231)
275 COG1220 HslU ATP-dependent pro 26.9 1.2E+02 0.0025 26.3 4.3 39 103-141 42-80 (444)
276 TIGR00035 asp_race aspartate r 26.6 1.3E+02 0.0029 23.4 4.6 47 90-140 56-102 (229)
277 KOG0782 Predicted diacylglycer 26.6 1.2E+02 0.0026 27.9 4.6 39 39-80 421-461 (1004)
278 PRK13109 flhB flagellar biosyn 26.5 1.6E+02 0.0036 25.1 5.3 41 105-145 258-321 (358)
279 KOG3286 Selenoprotein T [Gener 26.4 1.7E+02 0.0038 23.0 4.9 35 93-127 81-115 (226)
280 COG1519 KdtA 3-deoxy-D-manno-o 26.4 66 0.0014 28.1 2.9 39 90-129 58-96 (419)
281 PF06309 Torsin: Torsin; Inte 26.1 1.7E+02 0.0037 21.1 4.6 42 63-112 82-123 (127)
282 COG0028 IlvB Thiamine pyrophos 26.1 2.7E+02 0.0058 25.2 6.8 62 96-164 188-257 (550)
283 PRK09545 znuA high-affinity zi 25.9 1.7E+02 0.0038 24.1 5.3 42 95-140 238-279 (311)
284 cd04133 Rop_like Rop subfamily 25.9 1.9E+02 0.004 21.5 5.1 42 63-118 71-112 (176)
285 cd01428 ADK Adenylate kinase ( 25.8 1.1E+02 0.0024 22.6 3.8 29 113-141 1-29 (194)
286 PRK10886 DnaA initiator-associ 25.8 2.3E+02 0.005 21.9 5.6 24 96-121 123-146 (196)
287 PRK08118 topology modulation p 25.6 1.2E+02 0.0026 22.5 3.9 28 113-140 3-30 (167)
288 PRK14338 (dimethylallyl)adenos 25.5 2.2E+02 0.0047 25.0 6.1 78 34-123 23-104 (459)
289 PTZ00082 L-lactate dehydrogena 25.4 2E+02 0.0043 24.0 5.5 57 63-119 73-129 (321)
290 PRK06298 type III secretion sy 25.4 1.8E+02 0.004 24.8 5.4 52 94-145 238-313 (356)
291 cd04124 RabL2 RabL2 subfamily. 25.3 1.9E+02 0.0042 20.6 5.0 41 63-118 71-111 (161)
292 PRK00279 adk adenylate kinase; 25.1 1.3E+02 0.0029 23.0 4.2 29 113-141 2-30 (215)
293 PRK14325 (dimethylallyl)adenos 25.0 2.3E+02 0.005 24.6 6.1 48 63-122 39-86 (444)
294 PRK07475 hypothetical protein; 25.0 3.5E+02 0.0076 21.5 7.1 50 90-141 175-224 (245)
295 cd06533 Glyco_transf_WecG_TagA 24.9 2.7E+02 0.0058 20.7 5.7 31 96-126 57-87 (171)
296 PF04009 DUF356: Protein of un 24.9 41 0.00089 23.6 1.1 22 100-121 69-90 (107)
297 cd04118 Rab24 Rab24 subfamily. 24.8 1.9E+02 0.004 21.3 4.9 41 63-118 72-112 (193)
298 PLN02444 HMP-P synthase 24.8 2.1E+02 0.0046 26.2 5.8 96 68-169 375-482 (642)
299 PF08495 FIST: FIST N domain; 24.7 1.3E+02 0.0027 22.4 4.0 22 97-119 16-37 (198)
300 TIGR00190 thiC thiamine biosyn 24.6 2E+02 0.0044 25.1 5.4 50 87-140 265-322 (423)
301 KOG0741 AAA+-type ATPase [Post 24.5 2.6E+02 0.0056 25.8 6.2 52 89-140 514-567 (744)
302 PRK10430 DNA-binding transcrip 24.5 1.7E+02 0.0036 22.6 4.7 39 63-120 48-86 (239)
303 COG0549 ArcC Carbamate kinase 24.4 2.4E+02 0.0052 23.6 5.6 46 67-117 2-48 (312)
304 PRK14340 (dimethylallyl)adenos 24.3 2.3E+02 0.0049 24.8 5.9 48 62-122 41-89 (445)
305 cd00984 DnaB_C DnaB helicase C 24.3 3.1E+02 0.0067 21.1 6.3 24 44-70 106-129 (242)
306 PF01297 TroA: Periplasmic sol 24.2 1.8E+02 0.004 22.9 5.0 44 94-141 184-227 (256)
307 PF03709 OKR_DC_1_N: Orn/Lys/A 24.1 1.7E+02 0.0036 20.3 4.2 28 93-120 49-76 (115)
308 PRK14337 (dimethylallyl)adenos 24.1 2.6E+02 0.0055 24.4 6.2 47 63-121 38-84 (446)
309 PF07507 WavE: WavE lipopolysa 24.0 1E+02 0.0022 25.8 3.5 24 95-118 19-42 (311)
310 PRK06217 hypothetical protein; 23.9 1.5E+02 0.0034 22.0 4.3 29 113-141 3-31 (183)
311 PLN02350 phosphogluconate dehy 23.8 2.8E+02 0.006 24.8 6.4 81 63-165 71-151 (493)
312 PF08477 Miro: Miro-like prote 23.8 2.3E+02 0.0049 18.8 5.1 44 63-118 72-115 (119)
313 cd00464 SK Shikimate kinase (S 23.7 1.4E+02 0.0031 21.0 3.9 28 114-141 2-29 (154)
314 COG1844 Uncharacterized protei 23.5 97 0.0021 22.1 2.8 25 97-121 67-91 (125)
315 COG1856 Uncharacterized homolo 23.4 2.2E+02 0.0049 23.0 5.1 73 39-125 158-233 (275)
316 PRK12721 secretion system appa 23.3 2E+02 0.0044 24.4 5.3 41 105-145 249-312 (349)
317 KOG2683 Sirtuin 4 and related 23.3 47 0.001 26.9 1.3 14 1-14 221-234 (305)
318 PRK05234 mgsA methylglyoxal sy 23.3 2.1E+02 0.0046 20.8 4.8 39 100-140 66-110 (142)
319 cd05014 SIS_Kpsf KpsF-like pro 23.2 1.4E+02 0.003 20.5 3.7 27 96-124 61-87 (128)
320 TIGR01241 FtsH_fam ATP-depende 23.1 3.4E+02 0.0073 23.9 6.9 51 90-140 59-117 (495)
321 PRK02947 hypothetical protein; 23.0 99 0.0021 24.6 3.2 25 95-121 119-143 (246)
322 CHL00176 ftsH cell division pr 22.9 2.7E+02 0.0059 25.7 6.3 51 90-140 187-245 (638)
323 TIGR01418 PEP_synth phosphoeno 22.9 1E+02 0.0022 29.1 3.7 51 67-119 685-743 (782)
324 PF13692 Glyco_trans_1_4: Glyc 22.7 2.5E+02 0.0055 19.0 5.1 29 93-121 16-44 (135)
325 PRK13808 adenylate kinase; Pro 22.7 1.3E+02 0.0029 25.4 4.0 29 113-141 2-30 (333)
326 PHA02244 ATPase-like protein 22.7 3.7E+02 0.008 23.3 6.7 47 91-140 102-148 (383)
327 PRK12772 bifunctional flagella 22.5 1.9E+02 0.004 26.6 5.2 40 105-144 512-574 (609)
328 PF09363 XFP_C: XFP C-terminal 22.5 2E+02 0.0042 22.6 4.6 39 62-118 32-70 (203)
329 PRK11409 antitoxin YefM; Provi 22.5 1.5E+02 0.0033 19.4 3.5 28 89-118 4-31 (83)
330 COG3543 Uncharacterized conser 22.4 1.2E+02 0.0027 22.0 3.2 20 92-112 23-42 (135)
331 cd01866 Rab2 Rab2 subfamily. 22.4 2.3E+02 0.005 20.3 5.0 63 63-141 75-145 (168)
332 PRK06464 phosphoenolpyruvate s 22.4 1.1E+02 0.0024 29.1 3.8 50 67-118 692-749 (795)
333 COG0422 ThiC Thiamine biosynth 22.4 1.2E+02 0.0026 26.3 3.6 50 87-140 266-323 (432)
334 PF10116 Host_attach: Protein 22.3 1.2E+02 0.0025 21.8 3.2 35 90-124 70-104 (138)
335 TIGR03450 mycothiol_INO1 inosi 22.3 1.9E+02 0.0042 24.7 4.8 44 95-141 109-155 (351)
336 PLN02511 hydrolase 22.2 1.8E+02 0.004 24.6 4.9 27 92-118 153-179 (388)
337 PF13242 Hydrolase_like: HAD-h 22.0 57 0.0012 20.5 1.3 11 3-13 22-32 (75)
338 PRK00994 F420-dependent methyl 22.0 1.9E+02 0.0042 23.5 4.5 63 89-155 43-109 (277)
339 PRK09411 carbamate kinase; Rev 21.9 2.2E+02 0.0047 23.8 5.0 36 67-107 3-42 (297)
340 PRK10336 DNA-binding transcrip 21.9 2.2E+02 0.0049 20.8 4.9 40 63-121 43-82 (219)
341 PF01761 DHQ_synthase: 3-dehyd 21.7 1.3E+02 0.0028 24.4 3.6 85 4-108 32-126 (260)
342 PRK06843 inosine 5-monophospha 21.7 1.6E+02 0.0034 25.7 4.3 46 49-116 154-199 (404)
343 cd01423 MGS_CPS_I_III Methylgl 21.5 89 0.0019 21.5 2.4 39 100-140 62-105 (116)
344 PF04748 Polysacc_deac_2: Dive 21.4 3E+02 0.0064 21.5 5.5 49 73-129 145-193 (213)
345 cd01018 ZntC Metal binding pro 21.3 2.6E+02 0.0057 22.3 5.4 43 95-141 203-245 (266)
346 PLN02356 phosphateglycerate ki 21.1 2E+02 0.0043 25.2 4.9 38 63-120 249-286 (423)
347 TIGR01404 FlhB_rel_III type II 21.1 2.2E+02 0.0047 24.1 5.0 40 105-144 248-310 (342)
348 COG1358 RPL8A Ribosomal protei 20.9 1.8E+02 0.004 20.6 3.9 47 93-141 27-75 (116)
349 TIGR03677 rpl7ae 50S ribosomal 20.9 2.3E+02 0.005 19.9 4.4 42 98-141 31-74 (117)
350 PRK03731 aroL shikimate kinase 20.9 1.8E+02 0.004 21.1 4.1 29 113-141 4-32 (171)
351 PRK15180 Vi polysaccharide bio 20.8 2E+02 0.0044 26.1 4.8 70 90-163 171-256 (831)
352 PRK14582 pgaB outer membrane N 20.8 3.8E+02 0.0083 25.0 6.8 41 63-112 310-350 (671)
353 PF03721 UDPG_MGDP_dh_N: UDP-g 20.7 1.3E+02 0.0028 22.9 3.3 90 63-163 75-166 (185)
354 PRK15098 beta-D-glucoside gluc 20.7 1.9E+02 0.0042 27.3 5.0 56 63-122 500-555 (765)
355 PTZ00317 NADP-dependent malic 20.6 2.3E+02 0.0051 25.8 5.3 45 68-112 195-243 (559)
356 TIGR01387 cztR_silR_copR heavy 20.5 2.3E+02 0.005 20.7 4.7 40 63-121 41-80 (218)
357 PRK11475 DNA-binding transcrip 20.5 97 0.0021 24.0 2.6 21 100-120 57-77 (207)
358 TIGR01501 MthylAspMutase methy 20.4 3.5E+02 0.0075 19.6 6.0 90 26-140 21-114 (134)
359 COG2082 CobH Precorrin isomera 20.3 3.1E+02 0.0068 21.6 5.4 43 98-140 141-183 (210)
360 TIGR00696 wecB_tagA_cpsF bacte 20.3 3.7E+02 0.008 20.3 5.7 28 97-125 60-87 (177)
361 PRK10624 L-1,2-propanediol oxi 20.3 2.2E+02 0.0047 24.2 4.9 64 3-74 31-96 (382)
362 PLN02970 serine racemase 20.3 2.3E+02 0.005 23.5 5.0 37 64-120 175-211 (328)
363 PRK09284 thiamine biosynthesis 20.3 2.7E+02 0.0059 25.4 5.5 97 68-170 370-478 (607)
364 cd00431 cysteine_hydrolases Cy 20.2 1.9E+02 0.0041 20.7 4.0 27 90-118 21-47 (161)
365 cd01137 PsaA Metal binding pro 20.2 2.4E+02 0.0053 22.9 5.0 42 95-140 212-253 (287)
366 TIGR01303 IMP_DH_rel_1 IMP deh 20.2 1.8E+02 0.0038 25.9 4.4 36 63-116 236-271 (475)
367 COG2874 FlaH Predicted ATPases 20.2 1.5E+02 0.0033 23.8 3.6 52 62-126 121-174 (235)
368 PF00004 AAA: ATPase family as 20.2 1.9E+02 0.0041 19.4 3.9 9 112-120 24-32 (132)
369 COG1066 Sms Predicted ATP-depe 20.1 2.6E+02 0.0057 24.7 5.3 50 62-118 166-217 (456)
370 PRK13529 malate dehydrogenase; 20.1 2.4E+02 0.0052 25.7 5.2 45 68-112 193-241 (563)
371 TIGR01359 UMP_CMP_kin_fam UMP- 20.1 1.8E+02 0.0039 21.3 4.0 28 114-141 2-29 (183)
372 PRK09108 type III secretion sy 20.1 3.3E+02 0.0071 23.2 5.9 70 104-174 250-344 (353)
373 PTZ00117 malate dehydrogenase; 20.1 3.1E+02 0.0067 22.7 5.7 49 63-119 72-123 (319)
374 cd04117 Rab15 Rab15 subfamily. 20.1 3.1E+02 0.0068 19.5 5.2 65 63-142 71-142 (161)
375 COG4474 Uncharacterized protei 20.0 73 0.0016 24.3 1.7 31 98-128 58-88 (180)
No 1
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=99.97 E-value=6.6e-31 Score=202.18 Aligned_cols=166 Identities=51% Similarity=0.772 Sum_probs=142.3
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
|+|+|+.||||||+.++.+|||...|++.+.++.+|+++|.+|+||+++++.+.++++.+..-.|-.|+|.+|+||++..
T Consensus 5 ~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysGynSRwALkvL~~ifp~~~s~~p~lvtVffGaNDs~l~ 84 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSGYNSRWALKVLPEIFPKGSSIQPVLVTVFFGANDSCLP 84 (245)
T ss_pred ccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhccccccCCceEEEEEecCccccCC
Confidence 78999999999999888999999999999999999999999999999999999999987666789999999999999998
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHH-------------------------HHHhC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEY-------------------------AKYVN 135 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~-------------------------~a~~~ 135 (177)
......+++|.++|.+||++|++.++...|.++||++||||++++.|.++ .|++.
T Consensus 85 ~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~ 164 (245)
T KOG3035|consen 85 EPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEI 164 (245)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHh
Confidence 76666789999999999999999999999999999999999999865322 35677
Q ss_pred CCceee--cccCCCCCC---CCCCCccceeecccchhhhhh
Q 030474 136 SSPYIN--CFLGRPPKY---PQPIGKQQLFYHGGCSICYFL 171 (177)
Q Consensus 136 ~vp~id--~~l~~~~~~---l~~dG~~~~~~~~~~~~~~~~ 171 (177)
++..+| ..+....+| +-.|| -|-..++|=++
T Consensus 165 ~l~~vdlws~~Q~~~dw~~~~ltDG-----LHlS~~G~~iv 200 (245)
T KOG3035|consen 165 GLYVVDLWSKMQESDDWQTSCLTDG-----LHLSPKGNKIV 200 (245)
T ss_pred CCeeeeHHhhhhhcccHHHHHhccc-----eeeccccchhh
Confidence 899987 344444444 56778 66666665443
No 2
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=99.95 E-value=2.6e-27 Score=181.75 Aligned_cols=163 Identities=49% Similarity=0.719 Sum_probs=128.3
Q ss_pred eEEEEecccCccccCCC--ChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 4 QIVLFGDSITQQSFGSA--GWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~--~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
||+|+|||||+|..... +|...|++.+..+++++|.|++|.|+...++++++.+......+||+|+|++|+||+....
T Consensus 1 ~i~~~GDSit~g~~~~~~~~~~~~l~~~~~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 80 (199)
T cd01838 1 KIVLFGDSITQFSFDQGEFGFGAALADVYSRKLDVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGANDAALPG 80 (199)
T ss_pred CEEEecCcccccccCCCCCcHHHHHHHHhcchhheeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecCccccCCC
Confidence 69999999998544343 8999999988767999999999999999999998877521011899999999999997642
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHH------------------------HHHHHHhCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGR------------------------MEYAKYVNSS 137 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~------------------------~~~~a~~~~v 137 (177)
. .+..++++|.+++++|++++++..|+++|++++|+|..+..+ .+.++++.++
T Consensus 81 ~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 157 (199)
T cd01838 81 Q---PQHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGV 157 (199)
T ss_pred C---CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCC
Confidence 1 123689999999999999999988899999999999765421 1234667899
Q ss_pred ceee--cccCCC---CCCCCCCCccceeecccchhhhhhhhc
Q 030474 138 PYIN--CFLGRP---PKYPQPIGKQQLFYHGGCSICYFLLQL 174 (177)
Q Consensus 138 p~id--~~l~~~---~~~l~~dG~~~~~~~~~~~~~~~~~~~ 174 (177)
+|+| ..+... ...+..|| .||+..+|-.+.+.
T Consensus 158 ~~iD~~~~~~~~~~~~~~~~~Dg-----~Hpn~~G~~~~a~~ 194 (199)
T cd01838 158 PVIDLWTAMQEEAGWLESLLTDG-----LHFSSKGYELLFEE 194 (199)
T ss_pred cEEEHHHHHHhccCchhhhcCCC-----CCcCHhHHHHHHHH
Confidence 9997 334433 24567788 99999999877653
No 3
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=99.94 E-value=3.9e-26 Score=176.55 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=120.6
Q ss_pred ceEEEEecccCccccC---CCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 3 PQIVLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~---~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
.+|+|+|||+|+ |++ ..+|+.++++.+.....++|+|++|+|+.++++|+++.+. ..+||+|+|++|+||...
T Consensus 11 ~~iv~~GDSit~-G~~~~~~~~w~~~l~~~l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~---~~~pd~Vii~~GtND~~~ 86 (191)
T PRK10528 11 DTLLILGDSLSA-GYRMPASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLK---QHQPRWVLVELGGNDGLR 86 (191)
T ss_pred CEEEEEeCchhh-cCCCCccCchHHHHHHHHhhCCCEEecCcCcccHHHHHHHHHHHHH---hcCCCEEEEEeccCcCcc
Confidence 589999999998 443 2489999999887778899999999999999999988765 368999999999999864
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCC-CChh------HHHHHHHHhCCCceee---cccCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT--PPP-VDED------GRMEYAKYVNSSPYIN---CFLGRP 147 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t--p~p-~~~~------~~~~~~a~~~~vp~id---~~l~~~ 147 (177)
.++++++.+++++|+++++++ ++++++++ +|| ..+. ...+.+|++++++|+| .....+
T Consensus 87 --------~~~~~~~~~~l~~li~~~~~~--~~~~ill~~~~P~~~~~~~~~~~~~~~~~~a~~~~v~~id~~~~~~~~~ 156 (191)
T PRK10528 87 --------GFPPQQTEQTLRQIIQDVKAA--NAQPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDIPLLPFFMEEVYLK 156 (191)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHc--CCCEEEEEeecCCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHhhccC
Confidence 368999999999999999987 45566664 232 2221 1134568889999997 222456
Q ss_pred CCCCCCCCccceeecccchhhhhhhh
Q 030474 148 PKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 148 ~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
++++..|| .||+..+|..+.+
T Consensus 157 ~~~~~~DG-----iHpn~~Gy~~~A~ 177 (191)
T PRK10528 157 PQWMQDDG-----IHPNRDAQPFIAD 177 (191)
T ss_pred HhhcCCCC-----CCCCHHHHHHHHH
Confidence 78889999 9999999977654
No 4
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.94 E-value=4.2e-26 Score=177.77 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=119.2
Q ss_pred eEEEEecccCccccC---------CCChHHHHHHHHccc---CcEEEcccCCcchh---------hHHHhhcccCCCCCC
Q 030474 4 QIVLFGDSITQQSFG---------SAGWGAALADAYCRK---ADVLLRGYGGYNTR---------WALFLLHHIFPLDNS 62 (177)
Q Consensus 4 ~I~~~GDSit~gg~~---------~~~w~~~l~~~l~~~---~~v~N~G~~G~ts~---------~~l~~l~~~~~~~~~ 62 (177)
+|+|+|||||+ |++ ..+|+..|++.+... ++|+|+|++|+|+. ..+.++++.+.. .
T Consensus 1 ~I~~~GDSiT~-G~~~~~~~~~~~~~~w~~~L~~~l~~~~~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~--~ 77 (208)
T cd01839 1 TILCFGDSNTW-GIIPDTGGRYPFEDRWPGVLEKALGANGENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALES--H 77 (208)
T ss_pred CEEEEecCccc-CCCCCCCCcCCcCCCCHHHHHHHHccCCCCeEEEecCcCCcceeccCccccCcchHHHHHHHHHh--C
Confidence 69999999998 543 138999999998665 89999999999985 346777776641 2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-----CCCEEEEEcCCCCChh------------
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-----PIMLVVLITPPPVDED------------ 125 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~-----p~~~vil~tp~p~~~~------------ 125 (177)
.+||+|+|++|+||+.... ..++++|++|+++|++.+++.. |+++||+++|||+..+
T Consensus 78 ~~pd~vii~lGtND~~~~~------~~~~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~~~~~~~~~~~ 151 (208)
T cd01839 78 SPLDLVIIMLGTNDLKSYF------NLSAAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKGSLAGKFAGAE 151 (208)
T ss_pred CCCCEEEEecccccccccc------CCCHHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCccccchhhhhccHH
Confidence 6899999999999987531 2589999999999999999976 7899999999987211
Q ss_pred -------HHHHHHHHhCCCceeec--ccCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 126 -------GRMEYAKYVNSSPYINC--FLGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 126 -------~~~~~~a~~~~vp~id~--~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
...+.+|++.+++|+|. .+. .+..|| .||++.+|-.+.+
T Consensus 152 ~~~~~~~~~~~~~a~~~~~~~iD~~~~~~----~~~~DG-----vH~~~~G~~~~a~ 199 (208)
T cd01839 152 EKSKGLADAYRALAEELGCHFFDAGSVGS----TSPVDG-----VHLDADQHAALGQ 199 (208)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEcHHHHhc----cCCCCc-----cCcCHHHHHHHHH
Confidence 01234577899999982 221 146799 9999999987765
No 5
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.93 E-value=2.8e-25 Score=170.58 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=122.5
Q ss_pred CceEEEEecccCccccCC----CChHHHHHHHHcc----cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEec
Q 030474 2 RPQIVLFGDSITQQSFGS----AGWGAALADAYCR----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG 73 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~----~~w~~~l~~~l~~----~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G 73 (177)
..||+++|||||+ |++. .+|+..+++.+.+ ++++.|.|++|.|+.+.++++++ +. ..+||+|+|++|
T Consensus 2 ~~~i~~~GDSit~-G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~-~~---~~~pd~Vii~~G 76 (191)
T cd01836 2 PLRLLVLGDSTAA-GVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAP-LP---ETRFDVAVISIG 76 (191)
T ss_pred CeEEEEEeccccc-cccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHh-cc---cCCCCEEEEEec
Confidence 3589999999997 6652 4799888887743 57899999999999999999988 33 479999999999
Q ss_pred cccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh----------------HH---HHHHHHh
Q 030474 74 ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED----------------GR---MEYAKYV 134 (177)
Q Consensus 74 ~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~----------------~~---~~~~a~~ 134 (177)
+||+... .++++|.++++++++++++++|+++|+++++||+... .. .++++++
T Consensus 77 ~ND~~~~--------~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~ 148 (191)
T cd01836 77 VNDVTHL--------TSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQPLRWLLGRRARLLNRALERLASE 148 (191)
T ss_pred ccCcCCC--------CCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998753 5899999999999999999889999999998876421 00 1334566
Q ss_pred C-CCceeecccCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 135 N-SSPYINCFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 135 ~-~vp~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+ ++.|+|..-...+.++..|| .||++.+|-.+.+
T Consensus 149 ~~~~~~id~~~~~~~~~~~~Dg-----lHpn~~Gy~~~a~ 183 (191)
T cd01836 149 APRVTLLPATGPLFPALFASDG-----FHPSAAGYAVWAE 183 (191)
T ss_pred CCCeEEEecCCccchhhccCCC-----CCCChHHHHHHHH
Confidence 6 89999733222256788899 9999999976654
No 6
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=99.93 E-value=1.5e-25 Score=173.37 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=121.4
Q ss_pred ceEEEEecccCccccCC----CChHHHHHHHHcccCcEEEcccCCcchhhHHH--hhcccCCCCCCCCCcEEEEEecccc
Q 030474 3 PQIVLFGDSITQQSFGS----AGWGAALADAYCRKADVLLRGYGGYNTRWALF--LLHHIFPLDNSNPPVATTIFFGAND 76 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~----~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~--~l~~~~~~~~~~~pd~Vvi~~G~ND 76 (177)
|+|+|+|||+|+ |++. .+|+..|++.+..++.|.|+|++|+|+..++. ++++.+.. ..+||+|+|++|+||
T Consensus 1 ~~i~~~GDS~t~-G~~~~~~~~~w~~~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~--~~~pdlVii~~G~ND 77 (198)
T cd01821 1 PTIFLAGDSTVA-DYDPGAPQAGWGQALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKL--IKPGDYVLIQFGHND 77 (198)
T ss_pred CEEEEEecCCcc-cCCCCCCCCChHHHHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhh--CCCCCEEEEECCCCC
Confidence 689999999998 4442 69999999988778999999999999987764 56665541 137999999999999
Q ss_pred ccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh--------------HHHHHHHHhCCCceee-
Q 030474 77 AALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED--------------GRMEYAKYVNSSPYIN- 141 (177)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~--------------~~~~~~a~~~~vp~id- 141 (177)
+.... .....+.++|.+|+++||+++++. ++++|+++|+|.... ...+.+|++++++|+|
T Consensus 78 ~~~~~---~~~~~~~~~~~~nl~~ii~~~~~~--~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 152 (198)
T cd01821 78 QKPKD---PEYTEPYTTYKEYLRRYIAEARAK--GATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDL 152 (198)
T ss_pred CCCCC---CCCCCcHHHHHHHHHHHHHHHHHC--CCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEec
Confidence 87642 112358999999999999999987 689999999873210 2345668899999997
Q ss_pred -cccC-------C--C-C--CCCCCCCccceeecccchhhhhhhh
Q 030474 142 -CFLG-------R--P-P--KYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 142 -~~l~-------~--~-~--~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..+. . . . .++..|| .||++.+|-.+.+
T Consensus 153 ~~~~~~~~~~~g~~~~~~~~~~~~~Dg-----vHp~~~G~~~~a~ 192 (198)
T cd01821 153 NAASRALYEAIGPEKSKKYFPEGPGDN-----THFSEKGADVVAR 192 (198)
T ss_pred HHHHHHHHHHhChHhHHhhCcCCCCCC-----CCCCHHHHHHHHH
Confidence 2221 0 1 1 3678899 9999999977654
No 7
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.93 E-value=3.7e-25 Score=169.34 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=117.8
Q ss_pred eEEEEecccCccccC---CCChHHHHHHHHcccCcEEEcccCCcchhhHH-------HhhcccCCCCCCCCCcEEEEEec
Q 030474 4 QIVLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWAL-------FLLHHIFPLDNSNPPVATTIFFG 73 (177)
Q Consensus 4 ~I~~~GDSit~gg~~---~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l-------~~l~~~~~~~~~~~pd~Vvi~~G 73 (177)
||+|+|||+|+ |++ .++|+..|++.+..++.+.|.|++|.|+.... +++.+.+ ..+||+|+|++|
T Consensus 2 ~i~~~GDSit~-G~~~~~~~~~~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~----~~~pd~Vii~~G 76 (188)
T cd01827 2 KVACVGNSITE-GAGLRAYDSYPSPLAQMLGDGYEVGNFGKSARTVLNKGDHPYMNEERYKNAL----AFNPNIVIIKLG 76 (188)
T ss_pred eEEEEeccccc-ccCCCCCCchHHHHHHHhCCCCeEEeccCCcceeecCCCcCccchHHHHHhh----ccCCCEEEEEcc
Confidence 79999999998 554 35899999998877889999999999875321 2333333 378999999999
Q ss_pred cccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh--------H-------HHHHHHHhCCCc
Q 030474 74 ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED--------G-------RMEYAKYVNSSP 138 (177)
Q Consensus 74 ~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~--------~-------~~~~~a~~~~vp 138 (177)
+||..... ..+.++|.+++++||+.+++..|+++|++++|+|+... . +.+.++++++++
T Consensus 77 ~ND~~~~~------~~~~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 150 (188)
T cd01827 77 TNDAKPQN------WKYKDDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLK 150 (188)
T ss_pred cCCCCCCC------CccHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCc
Confidence 99987532 13578999999999999999999999999999875321 1 124457789999
Q ss_pred eee--cccCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 139 YIN--CFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 139 ~id--~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
|+| ..+...+. +..|| .||++++|-.+..
T Consensus 151 ~vD~~~~~~~~~~-~~~Dg-----~Hpn~~G~~~~A~ 181 (188)
T cd01827 151 LIDLHTPLKGKPE-LVPDW-----VHPNEKGAYILAK 181 (188)
T ss_pred EEEccccccCCcc-ccCCC-----CCcCHHHHHHHHH
Confidence 997 44544444 45788 9999999976543
No 8
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=99.92 E-value=2.4e-24 Score=162.94 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=121.1
Q ss_pred eEEEEecccCccccC---CCChHHHHHHHH---cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccc
Q 030474 4 QIVLFGDSITQQSFG---SAGWGAALADAY---CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (177)
Q Consensus 4 ~I~~~GDSit~gg~~---~~~w~~~l~~~l---~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~ 77 (177)
+|+|+|||||+ |++ ..+|+..+++.+ ..++.++|.|++|.++...+.++++.+. ..+||+|+|++|+||.
T Consensus 2 ~i~~~GDSit~-G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~---~~~pd~v~i~~G~ND~ 77 (177)
T cd01822 2 TILALGDSLTA-GYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLA---QHKPDLVILELGGNDG 77 (177)
T ss_pred eEEEEcccccc-CcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHH---hcCCCEEEEeccCccc
Confidence 79999999998 444 248999998877 3568899999999999999999987765 3689999999999998
Q ss_pred cccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC-CCC--hh------HHHHHHHHhCCCceeec---ccC
Q 030474 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP-PVD--ED------GRMEYAKYVNSSPYINC---FLG 145 (177)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~-p~~--~~------~~~~~~a~~~~vp~id~---~l~ 145 (177)
... .++++|.++++++++.++++ +++||+++++ |.. .. ...+.++++++++|+|. .+.
T Consensus 78 ~~~--------~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~~~~~~~ 147 (177)
T cd01822 78 LRG--------IPPDQTRANLRQMIETAQAR--GAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPFFLEGVA 147 (177)
T ss_pred ccC--------CCHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEechHHhhhh
Confidence 642 68999999999999999988 6889998753 322 11 12245677889999973 344
Q ss_pred CCCCCCCCCCccceeecccchhhhhhhh
Q 030474 146 RPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 146 ~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..++++..|| .||+..+|-.+.+
T Consensus 148 ~~~~~~~~Dg-----vHpn~~G~~~~a~ 170 (177)
T cd01822 148 GDPELMQSDG-----IHPNAEGQPIIAE 170 (177)
T ss_pred hChhhhCCCC-----CCcCHHHHHHHHH
Confidence 5677888999 9999999976654
No 9
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=99.92 E-value=1.9e-24 Score=163.64 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=115.2
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 82 (177)
++|+|+|||+|+ | |.. .......+.++|+|++|+|+.+.+++++..+. ..+||+|+|++|+||+...
T Consensus 1 ~~iv~~GdS~t~-~-----~~~--~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~---~~~pd~v~i~~G~ND~~~~-- 67 (174)
T cd01841 1 KNIVFIGDSLFE-G-----WPL--YEAEGKGKTVNNLGIAGISSRQYLEHIEPQLI---QKNPSKVFLFLGTNDIGKE-- 67 (174)
T ss_pred CCEEEEcchhhh-c-----Cch--hhhccCCCeEEecccccccHHHHHHHHHHHHH---hcCCCEEEEEeccccCCCC--
Confidence 579999999998 3 431 11224578999999999999999999965554 4799999999999998653
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh---------H------HHHHHHHhCCCceee--cccC
Q 030474 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED---------G------RMEYAKYVNSSPYIN--CFLG 145 (177)
Q Consensus 83 ~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~---------~------~~~~~a~~~~vp~id--~~l~ 145 (177)
.++++|.+++++|++.++++.|+++|+++++||+... . +.+.++++.+++||| ..+.
T Consensus 68 ------~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~~~~ 141 (174)
T cd01841 68 ------VSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPELGVTFIDLNDVLV 141 (174)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHHCCCEEEEcHHHHc
Confidence 4899999999999999999999999999998886431 1 124457788999997 3332
Q ss_pred C----CCCCCCCCCccceeecccchhhhhhhh
Q 030474 146 R----PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 146 ~----~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
. ....+..|| .||++.+|-.+.+
T Consensus 142 ~~~~~~~~~~~~Dg-----lH~n~~Gy~~~a~ 168 (174)
T cd01841 142 DEFGNLKKEYTTDG-----LHFNPKGYQKLLE 168 (174)
T ss_pred CCCCCccccccCCC-----cccCHHHHHHHHH
Confidence 2 223577889 9999999987754
No 10
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.91 E-value=5.5e-24 Score=162.34 Aligned_cols=150 Identities=24% Similarity=0.248 Sum_probs=119.7
Q ss_pred ceEEEEecccCccccCC---CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 3 PQIVLFGDSITQQSFGS---AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~---~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
+||+++|||+|+ |++. .+|+..+.... ++.++|+|++|.++.+.++++++.+. ..+||+|+|++|+||...
T Consensus 1 ~~i~~~GDSi~~-g~~~~~~~~~~~~l~~~~--~~~v~n~g~~G~~~~~~l~~l~~~~~---~~~~d~v~i~~G~ND~~~ 74 (183)
T cd04501 1 MRVVCLGDSITY-GYPVGPEASWVNLLAEFL--GKEVINRGINGDTTSQMLVRFYEDVI---ALKPAVVIIMGGTNDIIV 74 (183)
T ss_pred CeEEEEcccccc-CcCCCCcchHHHHHHhhc--CCeEEecCcCCccHHHHHHHHHHHHH---hcCCCEEEEEeccCcccc
Confidence 479999999998 5543 37999888654 68899999999999999999987654 478999999999999975
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH-----------------HHHHHHHhCCCceee-
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG-----------------RMEYAKYVNSSPYIN- 141 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~-----------------~~~~~a~~~~vp~id- 141 (177)
. .++++|.++++++++.+++. ++++|+++|+|..... ..++++++.+++|+|
T Consensus 75 ~--------~~~~~~~~~~~~li~~~~~~--~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~ 144 (183)
T cd04501 75 N--------TSLEMIKDNIRSMVELAEAN--GIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLLFLDF 144 (183)
T ss_pred C--------CCHHHHHHHHHHHHHHHHHC--CCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCCEEec
Confidence 3 58999999999999999986 6789999998864321 123456778999997
Q ss_pred -cccCC-----CCCCCCCCCccceeecccchhhhhhhh
Q 030474 142 -CFLGR-----PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 142 -~~l~~-----~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..+.. .+.++..|| .||+..+|-.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~Dg-----vHp~~~Gy~~~a~ 177 (183)
T cd04501 145 YSPLLDERNVGLKPGLLTDG-----LHPSREGYRVMAP 177 (183)
T ss_pred hhhhhccccccccccccCCC-----CCCCHHHHHHHHH
Confidence 33332 245677889 9999999977655
No 11
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.91 E-value=5.9e-24 Score=163.58 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=120.3
Q ss_pred ceEEEEecccCccccCC---CChHHHHHHHH---cccCcEEEcccCCcchhhHHHhhcccCCC-CCCCCCcEEEEEeccc
Q 030474 3 PQIVLFGDSITQQSFGS---AGWGAALADAY---CRKADVLLRGYGGYNTRWALFLLHHIFPL-DNSNPPVATTIFFGAN 75 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~---~~w~~~l~~~l---~~~~~v~N~G~~G~ts~~~l~~l~~~~~~-~~~~~pd~Vvi~~G~N 75 (177)
+||+|+|||||+ |++. .+|+.++.+.+ ..++.+.|.|++|.|+...++|+++.+.. ....+||+|+|++|+|
T Consensus 2 ~~i~~lGDSit~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~N 80 (193)
T cd01835 2 KRLIVVGDSLVY-GWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLN 80 (193)
T ss_pred cEEEEEcCcccc-CCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCc
Confidence 589999999998 5542 48999988765 24688999999999999999998765431 1126899999999999
Q ss_pred cccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH-------------HHHHHHHhCCCceee-
Q 030474 76 DAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG-------------RMEYAKYVNSSPYIN- 141 (177)
Q Consensus 76 D~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~-------------~~~~~a~~~~vp~id- 141 (177)
|...... ..+..+.++|++++++|++.+++ +++|++++|+|+.++. ..+.++++.+++|+|
T Consensus 81 D~~~~~~--~~~~~~~~~~~~~~~~ii~~~~~---~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vd~ 155 (193)
T cd01835 81 DTARGGR--KRPQLSARAFLFGLNQLLEEAKR---LVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLRRDVPFLDT 155 (193)
T ss_pred ccccccC--cccccCHHHHHHHHHHHHHHHhc---CCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeEeC
Confidence 9976421 12346789999999999998874 4679999999986521 123456788999997
Q ss_pred -cccCCCC----CCCCCCCccceeecccchhhhhhhh
Q 030474 142 -CFLGRPP----KYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 142 -~~l~~~~----~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..+.... +++..|| .||+..+|-.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~Dg-----~Hpn~~G~~~~a~ 187 (193)
T cd01835 156 FTPLLNHPQWRRELAATDG-----IHPNAAGYGWLAW 187 (193)
T ss_pred ccchhcCcHHHHhhhccCC-----CCCCHHHHHHHHH
Confidence 3344333 3445688 9999999977654
No 12
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.91 E-value=5.2e-24 Score=162.68 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=115.2
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcc-----cCCCCCCCCCcEEEEEecccccc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHH-----IFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~-----~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
||+|+|||+|+|+ +|+..+++.+ ++.+.|+|++|.|+.... +++. .+. ..+||+|+|++|+||..
T Consensus 1 ~iv~~GDS~t~g~----~~~~~l~~~l--~~~v~N~g~~G~t~~~~~-~~~~~~~~~~l~---~~~pd~Vii~~G~ND~~ 70 (189)
T cd01825 1 RIAQLGDSHIAGD----FFTDVLRGLL--GVIYDNLGVNGASASLLL-KWDAEFLQAQLA---ALPPDLVILSYGTNEAF 70 (189)
T ss_pred CeeEecCcccccc----chhhHHHhhh--ceEEecCccCchhhhhhh-ccCHHHHHHHHh---hCCCCEEEEECCCcccc
Confidence 6999999999853 6998898877 789999999999987533 3322 222 47899999999999986
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh----------------HHHHHHHHhCCCceee-
Q 030474 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED----------------GRMEYAKYVNSSPYIN- 141 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~----------------~~~~~~a~~~~vp~id- 141 (177)
.. ..+.++|.++++.+++++++++|+++|++++|+|.... ...+.++++++++|+|
T Consensus 71 ~~-------~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vd~ 143 (189)
T cd01825 71 NK-------QLNASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTGAGRWRTPPGLDAVIAAQRRVAKEEGIAFWDL 143 (189)
T ss_pred cC-------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCCCCcccCCcHHHHHHHHHHHHHHcCCeEEeH
Confidence 53 25799999999999999999999999999999875221 1124567788999997
Q ss_pred -cccCC--------CCCCCCCCCccceeecccchhhhhhhhc
Q 030474 142 -CFLGR--------PPKYPQPIGKQQLFYHGGCSICYFLLQL 174 (177)
Q Consensus 142 -~~l~~--------~~~~l~~dG~~~~~~~~~~~~~~~~~~~ 174 (177)
..+.. .+.++..|| .||++.+|-.+.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~Dg-----~Hp~~~G~~~~a~~ 180 (189)
T cd01825 144 YAAMGGEGGIWQWAEPGLARKDY-----VHLTPRGYERLANL 180 (189)
T ss_pred HHHhCCcchhhHhhcccccCCCc-----ccCCcchHHHHHHH
Confidence 33322 235677888 99999999877653
No 13
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=99.91 E-value=2.3e-23 Score=158.90 Aligned_cols=152 Identities=22% Similarity=0.180 Sum_probs=117.2
Q ss_pred eEEEEecccCccccCC-------CChHHHHHHHHc---ccCcEEEcccCCcchhhHHHh-hcccCCCCCCCCCcEEEEEe
Q 030474 4 QIVLFGDSITQQSFGS-------AGWGAALADAYC---RKADVLLRGYGGYNTRWALFL-LHHIFPLDNSNPPVATTIFF 72 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~-------~~w~~~l~~~l~---~~~~v~N~G~~G~ts~~~l~~-l~~~~~~~~~~~pd~Vvi~~ 72 (177)
||+|+|||||+| ++. .+|+..+++.+. .++.+.|.|++|.++...+.+ +...+. .+||+|+|++
T Consensus 1 ~i~~~GDSit~G-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~~~~----~~~d~vii~~ 75 (185)
T cd01832 1 RYVALGDSITEG-VGDPVPDGGYRGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPAALA----LRPDLVTLLA 75 (185)
T ss_pred CeeEecchhhcc-cCCCCCCCccccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHHHHh----cCCCEEEEec
Confidence 699999999984 432 489999999884 378999999999998875543 444333 6899999999
Q ss_pred ccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC-Chh----H----------HHHHHHHhCCC
Q 030474 73 GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV-DED----G----------RMEYAKYVNSS 137 (177)
Q Consensus 73 G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~-~~~----~----------~~~~~a~~~~v 137 (177)
|+||+... ..++++|.++++.+|+.+++ |+++|++++++|. ..+ . ..+.++++.++
T Consensus 76 G~ND~~~~-------~~~~~~~~~~~~~~i~~i~~--~~~~vil~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v 146 (185)
T cd01832 76 GGNDILRP-------GTDPDTYRADLEEAVRRLRA--AGARVVVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGA 146 (185)
T ss_pred cccccccC-------CCCHHHHHHHHHHHHHHHHh--CCCEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999752 26899999999999999994 4789999999887 221 0 12345678899
Q ss_pred ceee--ccc-CCCCCCCCCCCccceeecccchhhhhhhhc
Q 030474 138 PYIN--CFL-GRPPKYPQPIGKQQLFYHGGCSICYFLLQL 174 (177)
Q Consensus 138 p~id--~~l-~~~~~~l~~dG~~~~~~~~~~~~~~~~~~~ 174 (177)
+|+| ..+ ...+.++..|| .||+..+|-.+.+.
T Consensus 147 ~~vd~~~~~~~~~~~~~~~Dg-----iHpn~~G~~~~A~~ 181 (185)
T cd01832 147 VHVDLWEHPEFADPRLWASDR-----LHPSAAGHARLAAL 181 (185)
T ss_pred EEEecccCcccCCccccccCC-----CCCChhHHHHHHHH
Confidence 9997 222 24456778899 99999999776553
No 14
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.91 E-value=4.7e-23 Score=160.40 Aligned_cols=160 Identities=22% Similarity=0.215 Sum_probs=114.5
Q ss_pred eEEEEecccCccccCC-----CChHHHHHHHH-----cccCcEEEcccCCcchh------hHHHhhcccCCCCCCCCCcE
Q 030474 4 QIVLFGDSITQQSFGS-----AGWGAALADAY-----CRKADVLLRGYGGYNTR------WALFLLHHIFPLDNSNPPVA 67 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~-----~~w~~~l~~~l-----~~~~~v~N~G~~G~ts~------~~l~~l~~~~~~~~~~~pd~ 67 (177)
.|+|+|||||+ |++. .+|+.++++.+ ..+++|+|+|++|+|+. ++++|+++.+.. ..+||+
T Consensus 1 ~iv~~GDSiT~-G~~~~~~~~~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~--~~~p~~ 77 (204)
T cd01830 1 SVVALGDSITD-GRGSTPDANNRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS--QPGVRT 77 (204)
T ss_pred CEEEEeccccc-CCCCCCCCCCcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc--CCCCCE
Confidence 48999999998 4431 48999887665 34688999999999883 788999765541 246999
Q ss_pred EEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh--------HHH----HHHHHh-
Q 030474 68 TTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED--------GRM----EYAKYV- 134 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~--------~~~----~~~a~~- 134 (177)
|+|++|+||+.......+.+.+++++|.+|+++|+++++++ +++||+++++|+... .+. +.+.+.
T Consensus 78 vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~--~~~vil~t~~P~~~~~~~~~~~~~~~~~~n~~~~~~~ 155 (204)
T cd01830 78 VIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHAR--GIKVIGATITPFEGSGYYTPAREATRQAVNEWIRTSG 155 (204)
T ss_pred EEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHC--CCeEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHccC
Confidence 99999999987643211233568999999999999999988 689999998886321 111 222221
Q ss_pred CCCceee--cccCC-------CCCCCCCCCccceeecccchhhhhhhh
Q 030474 135 NSSPYIN--CFLGR-------PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 135 ~~vp~id--~~l~~-------~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
....+|| ..+.. .+.++..|| .||+..+|-.+.+
T Consensus 156 ~~~~~vD~~~~~~~~~~~~~~~~~~~~~DG-----vHpn~~Gy~~~A~ 198 (204)
T cd01830 156 AFDAVVDFDAALRDPADPSRLRPAYDSGDH-----LHPNDAGYQAMAD 198 (204)
T ss_pred CCCeeeEhHHhhcCCCCchhcccccCCCCC-----CCCCHHHHHHHHH
Confidence 1123565 33322 146778899 9999999987654
No 15
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.90 E-value=2.6e-23 Score=158.53 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=118.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-----ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-----RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-----~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~ 77 (177)
.+|+++|||+|+|. +|+..+...+. .+++++|.|++|.|+..+..++.+.+. ..+||+|+|++|+||.
T Consensus 2 ~~v~~~GDSit~g~----~~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~---~~~~d~v~l~~G~ND~ 74 (191)
T cd01834 2 DRIVFIGNSITDRG----GYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVL---PAKPDVVSIMFGINDS 74 (191)
T ss_pred CEEEEeCCChhhcc----ccHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhcccc---cCCCCEEEEEeecchH
Confidence 58999999999843 57665555442 357899999999999998888776654 4789999999999999
Q ss_pred cccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh--------hH----------HHHHHHHhCCCce
Q 030474 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE--------DG----------RMEYAKYVNSSPY 139 (177)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~--------~~----------~~~~~a~~~~vp~ 139 (177)
..... ...++++|.++++++++.+++..|+++||+++|+|... +. +.+.++++++++|
T Consensus 75 ~~~~~----~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~ 150 (191)
T cd01834 75 FRGFD----DPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVAF 150 (191)
T ss_pred hhccc----ccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 86310 13589999999999999999878899999999987532 11 1134567889999
Q ss_pred ee--cccCC-----CCCCCCCCCccceeecccchhhhhhhh
Q 030474 140 IN--CFLGR-----PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 140 id--~~l~~-----~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+| ..+.. ...++..|| .||+..+|-.+.+
T Consensus 151 iD~~~~~~~~~~~~~~~~~~~D~-----~Hpn~~G~~~~a~ 186 (191)
T cd01834 151 VDLFTPMKEAFQKAGEAVLTVDG-----VHPNEAGHRALAR 186 (191)
T ss_pred EecHHHHHHHHHhCCCccccCCC-----CCCCHHHHHHHHH
Confidence 97 33321 156778888 9999999977654
No 16
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.90 E-value=5.1e-23 Score=155.66 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=113.7
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCC
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 83 (177)
.|+|+|||+++ .|.....+ + .+++++|+|++|.++.+.+.++++.+. ..+||+|+|++|+||+...
T Consensus 1 ~i~~~g~s~~~------~w~~~~~~-~-~~~~v~N~Gi~G~~~~~~~~~~~~~~~---~~~p~~vvi~~G~ND~~~~--- 66 (171)
T cd04502 1 GILFYGSSSIR------LWDTLADD-L-APLPVVNRGFGGSTLADCLHYFDRLVL---PYQPRRVVLYAGDNDLASG--- 66 (171)
T ss_pred CEEEEcCchhc------chhhHHHh-C-CCCceeecCcccchHHHHHHHHHhhhc---cCCCCEEEEEEecCcccCC---
Confidence 38999999998 58764443 2 578999999999999999999988765 4689999999999998642
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh--hH------HH---HHHHH-hCCCceee--cccC-CC-
Q 030474 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE--DG------RM---EYAKY-VNSSPYIN--CFLG-RP- 147 (177)
Q Consensus 84 ~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~--~~------~~---~~~a~-~~~vp~id--~~l~-~~- 147 (177)
.+++++.+++++++++++++.|+++|++++++|... .. .+ +..++ ..+++|+| ..+. ..
T Consensus 67 -----~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~~~~~~~~~~~~~~n~~~~~~a~~~~~v~~vD~~~~~~~~~~ 141 (171)
T cd04502 67 -----RTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPARWALRPKIRRFNALLKELAETRPNLTYIDVASPMLDADG 141 (171)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHCCCCcEEEEEecCCCcchhhHHHHHHHHHHHHHHHhcCCCeEEEECcHHHhCCCC
Confidence 579999999999999999999999999999766432 11 11 22343 45799997 2232 22
Q ss_pred ---CCCCCCCCccceeecccchhhhhhhh
Q 030474 148 ---PKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 148 ---~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
++++..|| .||+.++|=.+.+
T Consensus 142 ~~~~~~~~~DG-----lH~n~~Gy~~~a~ 165 (171)
T cd04502 142 KPRAELFQEDG-----LHLNDAGYALWRK 165 (171)
T ss_pred CcChhhcCCCC-----CCCCHHHHHHHHH
Confidence 36678899 9999999976654
No 17
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=99.90 E-value=1.3e-22 Score=159.20 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=110.8
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhccc-CCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHI-FPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~-~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+|+|||||+ |++..+ .....+.+ .+.+++|+|++|+|+.+.+.|++.. +. ..+||+|+|++|+||+...
T Consensus 33 ~~iv~lGDSit~-g~~~~~-~~~~~~~~-~~~~v~N~Gi~G~tt~~~l~r~~~~~l~---~~~pd~VvI~~G~ND~~~~- 105 (214)
T cd01820 33 PDVVFIGDSITQ-NWEFTG-LEVWRELY-APLHALNFGIGGDRTQNVLWRLENGELD---GVNPKVVVLLIGTNNIGHT- 105 (214)
T ss_pred CCEEEECchHhh-hhcccc-hHHHHHHc-CcCCeEeeeeccccHhHHHHHHhcCCcc---CCCCCEEEEEecccccCCC-
Confidence 489999999998 544321 11122223 4688999999999999999998753 32 3579999999999998643
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh--hH-------HHHHH----HHhCCCceee--cccCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE--DG-------RMEYA----KYVNSSPYIN--CFLGR 146 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~--~~-------~~~~~----a~~~~vp~id--~~l~~ 146 (177)
.+++++.+++++|++.+++++|+++|++++++|... .. .++.+ ++..++.|+| ..+..
T Consensus 106 -------~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~~v~~vd~~~~~~~ 178 (214)
T cd01820 106 -------TTAEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNPNPLRERNAQVNRLLAVRYDGLPNVTFLDIDKGFVQ 178 (214)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCchhHHHHHHHHHHHHHHHhcCCCCEEEEeCchhhcc
Confidence 489999999999999999999999999999888653 11 12222 2345799997 33322
Q ss_pred CC----CCCCCCCccceeecccchhhhhhhh
Q 030474 147 PP----KYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 147 ~~----~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
.. ..+..|| .||+..+|-.+.+
T Consensus 179 ~~g~~~~~~~~DG-----lHpn~~Gy~~~a~ 204 (214)
T cd01820 179 SDGTISHHDMPDY-----LHLTAAGYRKWAD 204 (214)
T ss_pred cCCCcCHhhcCCC-----CCCCHHHHHHHHH
Confidence 21 2234577 9999999976654
No 18
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=99.89 E-value=6.4e-23 Score=159.08 Aligned_cols=164 Identities=19% Similarity=0.166 Sum_probs=114.9
Q ss_pred eEEEEecccCccccCC---CChHH-HHHHHH----cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccc
Q 030474 4 QIVLFGDSITQQSFGS---AGWGA-ALADAY----CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN 75 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~---~~w~~-~l~~~l----~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~N 75 (177)
+|+|+|||||+ |++. ++|.. .+.+.+ ..++++.|.|++|.|+...++|+++........+||+|+|++|+|
T Consensus 1 ~i~~~GDSit~-G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~~G~t~~~~~~r~~~~~~~~~~~~~d~V~i~~G~N 79 (204)
T cd04506 1 KIVALGDSLTE-GVGDETGKGGYVGRLDKLIETKTVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKELKKADVITITIGGN 79 (204)
T ss_pred CEeEEeccccC-ccCCCCCCCChHHHHHHHHhhhcCCceEEEeecccchhHHHHHHHHhcchhhhhcccCCEEEEEecch
Confidence 68999999998 5542 35544 444444 346889999999999999999987643211135899999999999
Q ss_pred cccccCCC------CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC-CC--Chh----------HHH---HHHHH
Q 030474 76 DAALFGRT------SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP-PV--DED----------GRM---EYAKY 133 (177)
Q Consensus 76 D~~~~~~~------~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~-p~--~~~----------~~~---~~~a~ 133 (177)
|+...... ......+.++|++++++||+++|+++|+++|++++++ |. ... .++ +.+++
T Consensus 80 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~ 159 (204)
T cd04506 80 DLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYVYFPNITEINDIVNDWNEASQKLAS 159 (204)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 98753210 0011225678999999999999999999999999742 22 111 111 22345
Q ss_pred hCC-Cceee--cccCCC--CCCCCCCCccceeecccchhhhhhhh
Q 030474 134 VNS-SPYIN--CFLGRP--PKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 134 ~~~-vp~id--~~l~~~--~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+.+ ++|+| ..+... +.++..|| .||++.+|..+.+
T Consensus 160 ~~~~v~~vd~~~~~~~~~~~~~~~~Dg-----~Hpn~~G~~~~a~ 199 (204)
T cd04506 160 QYKNAYFVPIFDLFSDGQNKYLLTSDH-----FHPNDKGYQLIAD 199 (204)
T ss_pred hCCCeEEEehHHhhcCCcccccccccC-----cCCCHHHHHHHHH
Confidence 565 99996 444544 46788899 9999999987654
No 19
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.89 E-value=2.3e-22 Score=153.17 Aligned_cols=144 Identities=20% Similarity=0.206 Sum_probs=104.7
Q ss_pred eEEEEecccCccccCC----CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 4 QIVLFGDSITQQSFGS----AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~----~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
||+|+|||||+ |++. .+|+..+++.+ +++++|+|+||.++... .+.+.+. ..+||+|+|++|+||...
T Consensus 1 ~iv~~GDSit~-G~g~~~~~~~~~~~~~~~~--~~~v~N~g~~G~~~~~~--~~~~~~~---~~~pd~vii~~G~ND~~~ 72 (177)
T cd01844 1 PWVFYGTSISQ-GACASRPGMAWTAILARRL--GLEVINLGFSGNARLEP--EVAELLR---DVPADLYIIDCGPNIVGA 72 (177)
T ss_pred CEEEEeCchhc-CcCCCCCCCcHHHHHHHHh--CCCeEEeeecccccchH--HHHHHHH---hcCCCEEEEEeccCCCcc
Confidence 69999999998 4432 48999998876 68999999999876432 2334443 368999999999999753
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-----------HHH----H---HHHH--hCCCce
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-----------GRM----E---YAKY--VNSSPY 139 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-----------~~~----~---~~a~--~~~vp~ 139 (177)
. .+|.++++++++++++++|+++|++++|+|.... .+. + .+++ ..++.|
T Consensus 73 ~-----------~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 141 (177)
T cd01844 73 E-----------AMVRERLGPLVKGLRETHPDTPILLVSPRYCPDAELTPGRGKLTLAVRRALREAFEKLRADGVPNLYY 141 (177)
T ss_pred H-----------HHHHHHHHHHHHHHHHHCcCCCEEEEecCCCCccccCcchhHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 1 1899999999999999999999999998875310 010 1 1121 235788
Q ss_pred ee--cccCCCCCCCCCCCccceeecccchhhhhhh
Q 030474 140 IN--CFLGRPPKYPQPIGKQQLFYHGGCSICYFLL 172 (177)
Q Consensus 140 id--~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~ 172 (177)
+| ..+... ..+..|| .||++++|-.+.
T Consensus 142 id~~~~~~~~-~~~~~Dg-----lHpn~~Gy~~~a 170 (177)
T cd01844 142 LDGEELLGPD-GEALVDG-----IHPTDLGHMRYA 170 (177)
T ss_pred ecchhhcCCC-CCCCCCC-----CCCCHHHHHHHH
Confidence 86 333332 3456689 999999997654
No 20
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.89 E-value=4.6e-22 Score=150.01 Aligned_cols=143 Identities=22% Similarity=0.278 Sum_probs=114.4
Q ss_pred EEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCC
Q 030474 5 IVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTS 84 (177)
Q Consensus 5 I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~ 84 (177)
|+++|||||++ . +|.. .+ .++.+.|.|++|.++....+++++.+. .+||+|+|++|+||+..
T Consensus 2 v~~~GdSi~~~-~---~~~~----~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~----~~pd~vvl~~G~ND~~~----- 63 (169)
T cd01828 2 LVFLGDSLTEG-G---PWAL----LF-PDVKVANRGISGDTTRGLLARLDEDVA----LQPKAIFIMIGINDLAQ----- 63 (169)
T ss_pred EEEecchhhcc-C---cHHH----hc-CCCceEecCcccccHHHHHHHHHHHhc----cCCCEEEEEeeccCCCC-----
Confidence 79999999984 2 4654 22 478899999999999999899887664 78999999999999864
Q ss_pred CCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh------hH------HHHHHHHhCCCceee--cccCC----
Q 030474 85 ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE------DG------RMEYAKYVNSSPYIN--CFLGR---- 146 (177)
Q Consensus 85 ~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~------~~------~~~~~a~~~~vp~id--~~l~~---- 146 (177)
..++++|.++++++|+.+++++|+++|++++++|..+ +. ..+.++++.+++|+| +.+..
T Consensus 64 ---~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~~~~~~~~~ 140 (169)
T cd01828 64 ---GTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQEGVTFLDLWAVFTNADGD 140 (169)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCEEEechhhhcCCCCC
Confidence 2589999999999999999998999999999988741 11 123456689999997 33432
Q ss_pred CCCCCCCCCccceeecccchhhhhhhh
Q 030474 147 PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 147 ~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
.+.++..|| .||++.+|-.+.+
T Consensus 141 ~~~~~~~Dg-----iHpn~~G~~~~a~ 162 (169)
T cd01828 141 LKNEFTTDG-----LHLNAKGYAVWAA 162 (169)
T ss_pred cchhhccCc-----cccCHHHHHHHHH
Confidence 246788888 9999999987654
No 21
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.86 E-value=2.3e-21 Score=144.46 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=106.5
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCC
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 83 (177)
+|+|+|||+|+| ++.|+|++|+++.+..+++++.+. ..+||+|+|++|+||....
T Consensus 2 ~~~~~Gds~~~g-------------------~~~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ND~~~~--- 56 (157)
T cd01833 2 RIMPLGDSITWG-------------------DKDHEGHSGYLIDQIAAAAADWVL---AAKPDVVLLHLGTNDLVLN--- 56 (157)
T ss_pred ceeecCCceeec-------------------CCCCCCCCCccHHHHHHHhhhccc---cCCCCEEEEeccCcccccC---
Confidence 799999999982 668999999999999999877665 5899999999999998753
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH-------HH---HHHHHh-----CCCceee--cccCC
Q 030474 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG-------RM---EYAKYV-----NSSPYIN--CFLGR 146 (177)
Q Consensus 84 ~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~-------~~---~~~a~~-----~~vp~id--~~l~~ 146 (177)
.+++++.++++++|+.++++.|+++|++++++|..... .+ +.++++ .++.|+| ..+..
T Consensus 57 -----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~n~~l~~~~~~~~~~~~~v~~vd~~~~~~~ 131 (157)
T cd01833 57 -----RDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDASGNARIAEYNAAIPGVVADLRTAGSPVVLVDMSTGYTT 131 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCC
Confidence 58999999999999999999999999999988764421 11 222333 4688886 33332
Q ss_pred CCCCCCCCCccceeecccchhhhhhhh
Q 030474 147 PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 147 ~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+++..|| .||++.+|-.+.+
T Consensus 132 --~~~~~Dg-----~Hpn~~Gy~~~a~ 151 (157)
T cd01833 132 --ADDLYDG-----LHPNDQGYKKMAD 151 (157)
T ss_pred --cccccCC-----CCCchHHHHHHHH
Confidence 5678899 9999999976654
No 22
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=99.81 E-value=7.6e-19 Score=132.82 Aligned_cols=135 Identities=22% Similarity=0.247 Sum_probs=97.8
Q ss_pred eEEEEecccCccccCC----------------CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcE
Q 030474 4 QIVLFGDSITQQSFGS----------------AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVA 67 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~----------------~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~ 67 (177)
+|+|+|||+|+ |++. .+|+..+++.+. ..+.+.+.+|.+ ||+
T Consensus 1 ~i~~iGDSit~-G~~~~~~~~~~~~~~~~~~~~~~~~~la~~l~--~~~~~~~~~g~~-------------------pd~ 58 (169)
T cd01831 1 KIEFIGDSITC-GYGVTGKSRCDFSAATEDPSLSYAALLARALN--AEYSIIAYSGIG-------------------PDL 58 (169)
T ss_pred CEEEEeccccc-cCccCCCCCCCCcccccchhhhHHHHHHHHhC--CcEEEEEecCCC-------------------CCE
Confidence 68999999998 5442 378888888874 445666788765 799
Q ss_pred EEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh----H---HHHHHHHhC---CC
Q 030474 68 TTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED----G---RMEYAKYVN---SS 137 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~----~---~~~~~a~~~---~v 137 (177)
|+|++|+||..... ..+.+++.+++++++++++++.|+++|+++++++.... . ..++++++. ++
T Consensus 59 vii~~G~ND~~~~~------~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 132 (169)
T cd01831 59 VVINLGTNDFSTGN------NPPGEDFTNAYVEFIEELRKRYPDAPIVLMLGPMLFGPYGTEEEIKRVAEAFKDQKSKKV 132 (169)
T ss_pred EEEECCcCCCCCCC------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCccccccccHHHHHHHHHHHHhcCCceE
Confidence 99999999986431 24799999999999999999999999988886654321 1 122233344 48
Q ss_pred ceeecccCCCCCCCCCCCccceeecccchhhhhhh
Q 030474 138 PYINCFLGRPPKYPQPIGKQQLFYHGGCSICYFLL 172 (177)
Q Consensus 138 p~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~ 172 (177)
+|+|......++ +..|| .||++.+|-.+.
T Consensus 133 ~~id~~~~~~~~-~~~Dg-----iHPn~~G~~~iA 161 (169)
T cd01831 133 HYFDTPGILQHN-DIGCD-----WHPTVAGHQKIA 161 (169)
T ss_pred EEEecccccCCC-CcCCC-----CCCCHHHHHHHH
Confidence 999733222233 34788 999999987654
No 23
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.81 E-value=7.1e-19 Score=135.71 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=104.9
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHc--ccCcEEEcccCCcch--h---hHHHhhcccCCCCCCCCCcEEEEEecccc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNT--R---WALFLLHHIFPLDNSNPPVATTIFFGAND 76 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~--~~~~v~N~G~~G~ts--~---~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND 76 (177)
||+|+|||+|+ +|...+.+.+. .+++++|+|++|.+. . ....+++..+. ..+||+|+|++|+||
T Consensus 1 ril~iGDS~~~------g~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~---~~~pd~vii~~G~ND 71 (200)
T cd01829 1 RVLVIGDSLAQ------GLAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIA---EEKPDVVVVFLGAND 71 (200)
T ss_pred CEEEEechHHH------HHHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHh---cCCCCEEEEEecCCC
Confidence 69999999998 35555554542 468899999986542 1 23345555554 478999999999999
Q ss_pred ccccCCCCCC--ccC--CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH----------HHHHHHHhCCCceee-
Q 030474 77 AALFGRTSER--QHV--PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG----------RMEYAKYVNSSPYIN- 141 (177)
Q Consensus 77 ~~~~~~~~~~--~~~--~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~----------~~~~~a~~~~vp~id- 141 (177)
+......+.. ... -.++|.++++++++++++. +++||+++|||+.+.. ..+.++++.+++|+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~--~~~vili~~pp~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~ 149 (200)
T cd01829 72 RQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAK--GVPVIWVGLPAMRSPKLSADMVYLNSLYREEVAKAGGEFVDV 149 (200)
T ss_pred CccccCCCceeecCChhHHHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCCChhHhHHHHHHHHHHHHHHHHcCCEEEEh
Confidence 8753211100 000 1478999999999999965 7899999999986432 123456678899997
Q ss_pred -cccCCCC---------------CCCCCCCccceeecccchhhhhhhh
Q 030474 142 -CFLGRPP---------------KYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 142 -~~l~~~~---------------~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..+.... .++..|| .||...+|-.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dg-----vH~~~~G~~~~a~ 192 (200)
T cd01829 150 WDGFVDENGRFTYSGTDVNGKKVRLRTNDG-----IHFTAAGGRKLAF 192 (200)
T ss_pred hHhhcCCCCCeeeeccCCCCcEEEeecCCC-----ceECHHHHHHHHH
Confidence 3332211 2345677 8999999977654
No 24
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=99.78 E-value=9.8e-19 Score=130.33 Aligned_cols=151 Identities=25% Similarity=0.298 Sum_probs=107.1
Q ss_pred EEEecccCccccCC--CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCC
Q 030474 6 VLFGDSITQQSFGS--AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (177)
Q Consensus 6 ~~~GDSit~gg~~~--~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 83 (177)
+|+|||+|+|.... .+|+..++.....++.+.|.|++|.++.+.+.++.+.+......+||+|+|++|+||.....
T Consensus 1 v~~GDS~t~g~~~~~~~~~~~~l~~~~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~~~~~~~d~vvi~~G~ND~~~~~-- 78 (179)
T PF13472_consen 1 VFLGDSITAGYGAPNNGSYPDRLAERPGRGIEVYNLGVSGATSSDFLARLQRDVLRFKDPKPDLVVISFGTNDVLNGD-- 78 (179)
T ss_dssp EEEESHHHHTTTTSSCTSHHHHHHHHHTCCEEEEEEE-TT-BHHHHHHHHHHHCHHHCGTTCSEEEEE--HHHHCTCT--
T ss_pred CEEccccccCCCCCCCCCHHHHHHHhhCCCcEEEEEeecCccHhHHHHHHHHHHhhhccCCCCEEEEEcccccccccc--
Confidence 69999999842222 58999998865567899999999999999988877643100147899999999999998631
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh----------H-------HHHHHHHhCCCceee--ccc
Q 030474 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED----------G-------RMEYAKYVNSSPYIN--CFL 144 (177)
Q Consensus 84 ~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~----------~-------~~~~~a~~~~vp~id--~~l 144 (177)
....+.+++.++|+++++.+++.. +|++++++|.... . +.+.++++.+++|+| ..+
T Consensus 79 --~~~~~~~~~~~~l~~~i~~~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (179)
T PF13472_consen 79 --ENDTSPEQYEQNLRRIIEQLRPHG---PVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFIDLFDAF 153 (179)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHTTS---EEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEEEHHHHH
T ss_pred --cccccHHHHHHHHHHHHHhhcccC---cEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEEECHHHH
Confidence 123578999999999999998773 8999988775432 0 123456788999997 334
Q ss_pred CCC----CCCCCCCCccceeecccchhh
Q 030474 145 GRP----PKYPQPIGKQQLFYHGGCSIC 168 (177)
Q Consensus 145 ~~~----~~~l~~dG~~~~~~~~~~~~~ 168 (177)
... +.++..|| .||...+|
T Consensus 154 ~~~~~~~~~~~~~D~-----~Hp~~~G~ 176 (179)
T PF13472_consen 154 DDHDGWFPKYYFSDG-----VHPNPAGH 176 (179)
T ss_dssp BTTTSCBHTCTBTTS-----SSBBHHHH
T ss_pred ccccccchhhcCCCC-----CCcCHHHh
Confidence 333 24566777 89988775
No 25
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=99.77 E-value=6.8e-18 Score=135.46 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=87.1
Q ss_pred eEEEEecccCccccCC---------------CChHHHHHHHHcc-cCcEEEcccCCcchhhHHHhhcccC---CCCCCCC
Q 030474 4 QIVLFGDSITQQSFGS---------------AGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIF---PLDNSNP 64 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~---------------~~w~~~l~~~l~~-~~~v~N~G~~G~ts~~~l~~l~~~~---~~~~~~~ 64 (177)
+++++|||+|+ |++. .+|+..+++.+.. ..++.|.|++|.++.+.+.+.+... .......
T Consensus 2 ~~v~iGDS~~~-G~g~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~n~a~sGa~~~~~~~~~~~~~~~~~~~l~~~ 80 (259)
T cd01823 2 RYVALGDSYAA-GPGAGPLDDGPDDGCRRSSNSYPTLLARALGDETLSFTDVACSGATTTDGIEPQQGGIAPQAGALDPD 80 (259)
T ss_pred CEEEecchhhc-CCCCCcccCCCCCCCccCCccHHHHHHHHcCCCCceeeeeeecCcccccccccccCCCchhhcccCCC
Confidence 79999999998 5542 1699999988843 4889999999999998875532110 0112356
Q ss_pred CcEEEEEeccccccccCC-------------------CCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 65 PVATTIFFGANDAALFGR-------------------TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~-------------------~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
||+|+|++|+||...... .........++|.+++..++++++++.|+++|++++.++
T Consensus 81 ~dlV~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~ 156 (259)
T cd01823 81 TDLVTITIGGNDLGFADVVKACILTGGGSSLAQEKGAADGARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPR 156 (259)
T ss_pred CCEEEEEECccccchHHHHHHHhhccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccc
Confidence 999999999999864310 001112457899999999999999999999999999543
No 26
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=99.76 E-value=5.4e-18 Score=126.21 Aligned_cols=136 Identities=18% Similarity=0.115 Sum_probs=101.0
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCC
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 83 (177)
.|+++|||+|. ++...+.+.+. +. ++| |.+|.++.+.+.++++... ....||+|+|++|+||..
T Consensus 1 ~v~~~GDSv~~------~~~~~~~~~~p-~~-~i~-a~~g~~~~~~~~~l~~~~~--~~~~~d~vvi~lGtNd~~----- 64 (150)
T cd01840 1 DITAIGDSVML------DSSPALQEIFP-NI-QID-AKVGRQMSEAPDLIRQLKD--SGKLRKTVVIGLGTNGPF----- 64 (150)
T ss_pred CeeEEeehHHH------chHHHHHHHCC-CC-EEE-eeecccHHHHHHHHHHHHH--cCCCCCeEEEEecCCCCC-----
Confidence 37899999998 57777877763 33 456 4455677888888887654 135789999999999973
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh--hHH---HHHHHHhC-CCceee--cccCCCCCCCCCCC
Q 030474 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE--DGR---MEYAKYVN-SSPYIN--CFLGRPPKYPQPIG 155 (177)
Q Consensus 84 ~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~--~~~---~~~~a~~~-~vp~id--~~l~~~~~~l~~dG 155 (177)
+.+|+++|++.++ |+.+|+|++|++... +.. .+++++++ +++++| ..+..+++|+..||
T Consensus 65 ----------~~~nl~~ii~~~~---~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~id~~~~~~~~~~~~~~Dg 131 (150)
T cd01840 65 ----------TKDQLDELLDALG---PDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTIIDWYKAAKGHPDWFYGDG 131 (150)
T ss_pred ----------CHHHHHHHHHHcC---CCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEEecHHHHhcccchhhcCCC
Confidence 3789999999985 358899999874321 111 24456676 899997 44667889999999
Q ss_pred ccceeecccchhhhhhhh
Q 030474 156 KQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~ 173 (177)
+||+..+|-.+.+
T Consensus 132 -----iHpn~~G~~~~a~ 144 (150)
T cd01840 132 -----VHPNPAGAKLYAA 144 (150)
T ss_pred -----CCCChhhHHHHHH
Confidence 9999999965543
No 27
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.70 E-value=2.3e-16 Score=116.68 Aligned_cols=156 Identities=26% Similarity=0.296 Sum_probs=111.7
Q ss_pred EEEEecccCccccCCC---ChHHH--H-HHHHcccCcEEEcccCCcchhhHHHhh--cccCCCCCCCCCcEEEEEecccc
Q 030474 5 IVLFGDSITQQSFGSA---GWGAA--L-ADAYCRKADVLLRGYGGYNTRWALFLL--HHIFPLDNSNPPVATTIFFGAND 76 (177)
Q Consensus 5 I~~~GDSit~gg~~~~---~w~~~--l-~~~l~~~~~v~N~G~~G~ts~~~l~~l--~~~~~~~~~~~pd~Vvi~~G~ND 76 (177)
|+++|||+|+|..... .+... + .........+.|.|++|.++......+ .+... ..+||+|+|++|+||
T Consensus 1 i~~~GDS~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~---~~~~d~vil~~G~ND 77 (187)
T cd00229 1 ILVIGDSITAGYGASSGSTFYSLLLYLLLLAGGPGVEVINLGVSGATTADALRRLGLRLALL---KDKPDLVIIELGTND 77 (187)
T ss_pred CeeeccccccccCCCCCCCCccchhhHHHhccCCCceEEeecccchhHHHHHhhcchhhhhc---cCCCCEEEEEecccc
Confidence 6899999998543221 11110 1 111134678999999999988877766 23333 478999999999999
Q ss_pred ccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH------------HHHHHHHhCC----Ccee
Q 030474 77 AALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG------------RMEYAKYVNS----SPYI 140 (177)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~------------~~~~~a~~~~----vp~i 140 (177)
..... ..+.+++.++++++++.+++..|+++|++++++|..... ..+.++++.+ ++++
T Consensus 78 ~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd00229 78 LGRGG------DTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREGLLGRALPRYNEAIKAVAAENPAPSGVDLV 151 (187)
T ss_pred ccccc------ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 97531 247899999999999999998889999999998874321 1234456666 8888
Q ss_pred e--cccCCC-CCCCCCCCccceeecccchhhhhhhhc
Q 030474 141 N--CFLGRP-PKYPQPIGKQQLFYHGGCSICYFLLQL 174 (177)
Q Consensus 141 d--~~l~~~-~~~l~~dG~~~~~~~~~~~~~~~~~~~ 174 (177)
| ..+... ..++..|| .||+..+|..+.++
T Consensus 152 d~~~~~~~~~~~~~~~Dg-----~H~~~~G~~~~a~~ 183 (187)
T cd00229 152 DLAALLGDEDKSLYSPDG-----IHPNPAGHKLIAEA 183 (187)
T ss_pred EhhhhhCCCccccccCCC-----CCCchhhHHHHHHH
Confidence 7 333322 57888899 99999999877553
No 28
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=99.66 E-value=1.3e-15 Score=119.00 Aligned_cols=154 Identities=24% Similarity=0.379 Sum_probs=109.5
Q ss_pred eEEEEecccCccccCC-----CChHHHHHHHHc-ccCc----EEEcccCCcchhhHHHhhcccCCCCCCCC-CcEEEEEe
Q 030474 4 QIVLFGDSITQQSFGS-----AGWGAALADAYC-RKAD----VLLRGYGGYNTRWALFLLHHIFPLDNSNP-PVATTIFF 72 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~-----~~w~~~l~~~l~-~~~~----v~N~G~~G~ts~~~l~~l~~~~~~~~~~~-pd~Vvi~~ 72 (177)
+|+++|||+|. |++. .+|+..+++.+. .+.. +.|.|++|.++...+.|+...+. ... +|+|+|++
T Consensus 10 ~i~~~GDSlt~-g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~~~s~~~~~~g~~rl~~~l~---~~~~~d~v~i~l 85 (216)
T COG2755 10 TVLALGDSLTA-GYGPANRLEGGWVQVLAKRLVAKGVAVINLVLNGGISGDTSAGGLQRLPALLK---QHLPPDLVIIML 85 (216)
T ss_pred eEEEeccchhc-cccCCCccccCchHHHHHHhhccCCeeeeeeecceeecCcchhHHHHhHHHHh---ccCCCCEEEEEe
Confidence 69999999997 5542 399999998884 3433 56788999999998888877765 344 89999999
Q ss_pred ccccccccCCCCCCccCCH--HHHHHHHHHHHHHHHHhCCC-----CEEEEEc--CCCC----Ch--hHH-------HHH
Q 030474 73 GANDAALFGRTSERQHVPV--EEYGDNLKIMVQHLKRLSPI-----MLVVLIT--PPPV----DE--DGR-------MEY 130 (177)
Q Consensus 73 G~ND~~~~~~~~~~~~~~~--~~~~~nl~~ii~~~r~~~p~-----~~vil~t--p~p~----~~--~~~-------~~~ 130 (177)
|+||.. .. ....+ +.+..|+++|++.+++..+. +.++++. +|.. .. ..| ...
T Consensus 86 G~ND~~-~~-----~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (216)
T COG2755 86 GGNDIG-PL-----RGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIATDFPTYGADWFHAANEILAQ 159 (216)
T ss_pred eccccc-hh-----cccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCccccchhHHHHHHHHHHHHHHHH
Confidence 999996 11 12344 99999999999999999754 5553333 3322 11 112 123
Q ss_pred HHHhCCCceee---ccc--CCCCCCCCCCCccceeecccchhhhhhh
Q 030474 131 AKYVNSSPYIN---CFL--GRPPKYPQPIGKQQLFYHGGCSICYFLL 172 (177)
Q Consensus 131 ~a~~~~vp~id---~~l--~~~~~~l~~dG~~~~~~~~~~~~~~~~~ 172 (177)
++.+..+|+.| ... ...+.++..|| .||+.++|=.+.
T Consensus 160 la~~~~v~~~d~~~~~~~~~~~~~~~~~Dg-----~H~n~~Gy~~~a 201 (216)
T COG2755 160 LANELFVPLADLFDAGVDGGRLPELLTEDG-----LHPNAKGYQALA 201 (216)
T ss_pred hhhhcCccchHHHhcccccccCcccccCCC-----CCcCHhhHHHHH
Confidence 34456688775 344 45678888999 999999986543
No 29
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=99.60 E-value=4.7e-15 Score=113.03 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=75.3
Q ss_pred CceEEEEecccCccccCC---CChHHHHHHHHcccCcEEEcccCCcchhh--HHHhhcccCCCCCCCCCcEEEEEecccc
Q 030474 2 RPQIVLFGDSITQQSFGS---AGWGAALADAYCRKADVLLRGYGGYNTRW--ALFLLHHIFPLDNSNPPVATTIFFGAND 76 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~---~~w~~~l~~~l~~~~~v~N~G~~G~ts~~--~l~~l~~~~~~~~~~~pd~Vvi~~G~ND 76 (177)
+++|+++|+|||+|+..+ ..|+..+++.+ +++++|.|+||..--+ +.+.+.+ .++|++++.+|.|
T Consensus 1 ~k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l--~~~~iNLGfsG~~~le~~~a~~ia~-------~~a~~~~ld~~~N- 70 (178)
T PF14606_consen 1 EKRWVAYGSSITQGACASRPGMAYPAILARRL--GLDVINLGFSGNGKLEPEVADLIAE-------IDADLIVLDCGPN- 70 (178)
T ss_dssp --EEEEEE-TT-TTTT-SSGGGSHHHHHHHHH--T-EEEEEE-TCCCS--HHHHHHHHH-------S--SEEEEEESHH-
T ss_pred CCeEEEECChhhcCCCCCCCcccHHHHHHHHc--CCCeEeeeecCccccCHHHHHHHhc-------CCCCEEEEEeecC-
Confidence 478999999999976543 38999999987 7999999999965221 1122222 3569999999999
Q ss_pred ccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-----------HHHHH----HHH-----hCC
Q 030474 77 AALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-----------GRMEY----AKY-----VNS 136 (177)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-----------~~~~~----~a~-----~~~ 136 (177)
. ++++|.+++..+|+.+|+.+|+++||++++.+.... ..++. +++ ..+
T Consensus 71 -~-----------~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~n 138 (178)
T PF14606_consen 71 -M-----------SPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKN 138 (178)
T ss_dssp -C-----------CTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TT
T ss_pred -C-----------CHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1 677999999999999999999999999997654321 11111 111 244
Q ss_pred Cceee--cccCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 137 SPYIN--CFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 137 vp~id--~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+-||+ +.+... .-...|| -||++.+++...+
T Consensus 139 l~~l~g~~llg~d-~e~tvDg-----vHP~DlG~~~~a~ 171 (178)
T PF14606_consen 139 LYYLDGEELLGDD-HEATVDG-----VHPNDLGMMRMAD 171 (178)
T ss_dssp EEEE-HHHCS-----------------------------
T ss_pred EEEeCchhhcCcc-ccccccc-----ccccccccccccc
Confidence 77775 444444 3467788 8999999876543
No 30
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=99.54 E-value=6e-14 Score=115.11 Aligned_cols=87 Identities=18% Similarity=0.108 Sum_probs=65.9
Q ss_pred CcEEEcccCCcchhhHH-------HhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHH
Q 030474 34 ADVLLRGYGGYNTRWAL-------FLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLK 106 (177)
Q Consensus 34 ~~v~N~G~~G~ts~~~l-------~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r 106 (177)
..+.|.|++|.++.++. +++++........++++|+|++|+||++... ......++++|++||+++++.+|
T Consensus 82 ~~~~N~av~Ga~s~dL~~qa~~lv~r~~~~~~i~~~~dwklVtI~IG~ND~c~~~--~~~~~~~~~~~~~nL~~~L~~Lr 159 (288)
T cd01824 82 DSGFNVAEPGAKSEDLPQQARLLVRRMKKDPRVDFKNDWKLITIFIGGNDLCSLC--EDANPGSPQTFVKNLRKALDILR 159 (288)
T ss_pred ccceeecccCcchhhHHHHHHHHHHHHhhccccccccCCcEEEEEecchhHhhhc--ccccCcCHHHHHHHHHHHHHHHH
Confidence 35789999999999888 4443221111124678899999999998632 11223689999999999999999
Q ss_pred HhCCCCEEEEEcCCCC
Q 030474 107 RLSPIMLVVLITPPPV 122 (177)
Q Consensus 107 ~~~p~~~vil~tp~p~ 122 (177)
+..|.+.|++++++..
T Consensus 160 ~~~P~~~V~lv~~~~~ 175 (288)
T cd01824 160 DEVPRAFVNLVGLLNV 175 (288)
T ss_pred HhCCCcEEEEEcCCCc
Confidence 9999999999998643
No 31
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.42 E-value=9.8e-14 Score=108.03 Aligned_cols=159 Identities=24% Similarity=0.282 Sum_probs=96.0
Q ss_pred EEEEecccCcccc-C-CCChHHHHHHHH---------cccCcEEEcccCCcchhh-----------H---HHhhcccCCC
Q 030474 5 IVLFGDSITQQSF-G-SAGWGAALADAY---------CRKADVLLRGYGGYNTRW-----------A---LFLLHHIFPL 59 (177)
Q Consensus 5 I~~~GDSit~gg~-~-~~~w~~~l~~~l---------~~~~~v~N~G~~G~ts~~-----------~---l~~l~~~~~~ 59 (177)
|++||||+|.++. + ..+|...+...+ ..++.+.|.|++|.++.. . ..+......
T Consensus 1 i~~fGDS~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~a~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (234)
T PF00657_consen 1 IVVFGDSLTDGGGDSNGGGWPEGLANNLSSCLGANQRNSGVDVSNYAISGATSDGDLYNLWAQVQNISQQISRLLDSKS- 79 (234)
T ss_dssp EEEEESHHHHTTTSSTTCTHHHHHHHHCHHCCHHHHHCTTEEEEEEE-TT--CC-HGGCCCCTCHHHHHHHHHHHHHHH-
T ss_pred CEEEeehhcccCCCCCCcchhhhHHHHHhhccccccCCCCCCeeccccCCCccccccchhhHHHHHHHHHhhccccccc-
Confidence 7899999998522 2 348999887776 356889999999998531 1 111111111
Q ss_pred CCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC-----EEEEEcCCCCC-----------
Q 030474 60 DNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM-----LVVLITPPPVD----------- 123 (177)
Q Consensus 60 ~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~-----~vil~tp~p~~----------- 123 (177)
..++|+|+|++|+||.... ........+++++.++++++|+.++... .. .++++..+|..
T Consensus 80 --~~~~~lv~i~~G~ND~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T PF00657_consen 80 --FYDPDLVVIWIGTNDYFNN-RDSSDNNTSVEEFVENLRNAIKRLRSNG-ARLIIVANIVVINLPPIGCLPAWSSNNKD 155 (234)
T ss_dssp --HHTTSEEEEE-SHHHHSSC-CSCSTTHHHHHHHHHHHHHHHHHHHHTT-TEEEEEEEEEEEHHC-GGGSTTHHHTHTT
T ss_pred --cCCcceEEEecccCcchhh-cccchhhhhHhhHhhhhhhhhhHHhccC-Ccccccccccccccccccccccccccccc
Confidence 3678999999999997521 0012234688999999999999999554 33 34444444321
Q ss_pred ---h-hH-------HH---HHHH--------HhCCCceee--cccCCC--------CCCCCCCCccceeecccchhhhhh
Q 030474 124 ---E-DG-------RM---EYAK--------YVNSSPYIN--CFLGRP--------PKYPQPIGKQQLFYHGGCSICYFL 171 (177)
Q Consensus 124 ---~-~~-------~~---~~~a--------~~~~vp~id--~~l~~~--------~~~l~~dG~~~~~~~~~~~~~~~~ 171 (177)
. +. .+ +..+ ...+++++| ..+... ..|+-.|| +||..+++..+
T Consensus 156 ~~~~~~~~~~~~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~D~-----~Hpt~~g~~~i 230 (234)
T PF00657_consen 156 SASCIERLNAIVAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPENDKYMFWDG-----VHPTEKGHKII 230 (234)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGGHHHCBBSSS-----SSB-HHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCcccceeccCCC-----cCCCHHHHHHH
Confidence 0 01 11 1122 356688886 222111 25788999 89999998776
Q ss_pred hh
Q 030474 172 LQ 173 (177)
Q Consensus 172 ~~ 173 (177)
.+
T Consensus 231 A~ 232 (234)
T PF00657_consen 231 AE 232 (234)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 32
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=99.33 E-value=5.7e-12 Score=103.07 Aligned_cols=85 Identities=19% Similarity=0.150 Sum_probs=70.2
Q ss_pred EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC-CEE
Q 030474 36 VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI-MLV 114 (177)
Q Consensus 36 v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~-~~v 114 (177)
+.|.|++|++|+++..++.++++......|++|+|++|+||++.... +...++++++|++|++++++.++++.|. ++|
T Consensus 94 ~qN~G~sGatSrdl~~~l~~Ll~n~~~~~P~lVtI~lGgND~C~g~~-d~~~~tp~eefr~NL~~~L~~Lr~~lP~~s~V 172 (305)
T cd01826 94 YQNLGVNGASSRNLLSIIKSIARNRTTDKPALVIYSMIGNDVCNGPN-DTINHTTPEEFYENVMEALKYLDTKLPNGSHV 172 (305)
T ss_pred HHHhccchhhhHHHHHHHHHhccccccCCCeEEEEEeccchhhcCCC-ccccCcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 67899999999999998887664222356899999999999987531 2234689999999999999999999877 799
Q ss_pred EEEcCCC
Q 030474 115 VLITPPP 121 (177)
Q Consensus 115 il~tp~p 121 (177)
+|++++-
T Consensus 173 iLvgmpd 179 (305)
T cd01826 173 ILVGLVD 179 (305)
T ss_pred EEEeccc
Confidence 9998775
No 33
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.04 E-value=1.7e-09 Score=87.23 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=80.2
Q ss_pred eEEEEecccCccccC---------------C------C-ChHHHHHHHHcc--cCcEEEcccCCcchhhH----------
Q 030474 4 QIVLFGDSITQQSFG---------------S------A-GWGAALADAYCR--KADVLLRGYGGYNTRWA---------- 49 (177)
Q Consensus 4 ~I~~~GDSit~gg~~---------------~------~-~w~~~l~~~l~~--~~~v~N~G~~G~ts~~~---------- 49 (177)
++++||||++..|.. . | .|++.|++.+.. ...++|.|++|.++...
T Consensus 1 ~l~vFGDS~sD~Gn~~~~~~~~~~~~~~~~~~grfsnG~~w~d~la~~lg~~~~~~~~N~A~~Ga~~~~~~~~~~~~~~~ 80 (270)
T cd01846 1 RLVVFGDSLSDTGNIFKLTGGSNPPPSPPYFGGRFSNGPVWVEYLAATLGLSGLKQGYNYAVGGATAGAYNVPPYPPTLP 80 (270)
T ss_pred CeEEeeCccccCCcchhhcCCCCCCCCCCCCCCccCCchhHHHHHHHHhCCCccCCcceeEecccccCCcccCCCCCCCC
Confidence 589999999986631 0 1 688899888743 35889999999876532
Q ss_pred --HHhhcccCCCC--CCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 50 --LFLLHHIFPLD--NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 50 --l~~l~~~~~~~--~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
...+++..... ...+.++++|++|+||...............+++.+++.++++++.... ..+|+++++||+.
T Consensus 81 ~l~~Qv~~f~~~~~~~~~~~~l~~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g-~~~i~v~~~p~~~ 157 (270)
T cd01846 81 GLSDQVAAFLAAHKLRLPPDTLVAIWIGANDLLNALDLPQNPDTLVTRAVDNLFQALQRLYAAG-ARNFLVLNLPDLG 157 (270)
T ss_pred CHHHHHHHHHHhccCCCCCCcEEEEEeccchhhhhccccccccccHHHHHHHHHHHHHHHHHCC-CCEEEEeCCCCCC
Confidence 12222211100 0235689999999999986421101123567899999999999999663 4568888887653
No 34
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=1.7e-08 Score=82.69 Aligned_cols=114 Identities=19% Similarity=0.329 Sum_probs=76.7
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc--ccCcEEEcc--cCCcchhhHH---HhhcccCCCCCCC-CCcEEEEEec
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRG--YGGYNTRWAL---FLLHHIFPLDNSN-PPVATTIFFG 73 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~--~~~~v~N~G--~~G~ts~~~l---~~l~~~~~~~~~~-~pd~Vvi~~G 73 (177)
..+|+++|||+.. |-..-|...|. .++.|.++. -||..-.+.. +.+.+.+. .+ +|.+|+|++|
T Consensus 116 a~kvLvvGDslm~------gla~gl~~al~t~~~i~i~~~sn~SSGlvr~dYfdWpk~i~~~l~---~~~~~a~vVV~lG 186 (354)
T COG2845 116 ADKVLVVGDSLMQ------GLAEGLDKALATSPGITIVTRSNGSSGLVRDDYFDWPKAIPELLD---KHPKPAAVVVMLG 186 (354)
T ss_pred CCEEEEechHHhh------hhHHHHHHHhccCCCcEEEEeecCCCCcccccccccHHHHHHHHH---hcCCccEEEEEec
Confidence 4689999999996 34555666563 467777753 3465433322 22333333 34 8999999999
Q ss_pred cccccccCCCC--CCccCC--HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH
Q 030474 74 ANDAALFGRTS--ERQHVP--VEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG 126 (177)
Q Consensus 74 ~ND~~~~~~~~--~~~~~~--~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~ 126 (177)
.||-....... .+.+.. .++|.+.++++++.++.+ .++|++++.||+..+.
T Consensus 187 aND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~--~~~V~WvGmP~~r~~~ 241 (354)
T COG2845 187 ANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTH--KVPVLWVGMPPFRKKK 241 (354)
T ss_pred CCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhccc--CCcEEEeeCCCccccc
Confidence 99987543111 111111 478999999999999988 6899999999987654
No 35
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=98.50 E-value=1.2e-06 Score=66.64 Aligned_cols=102 Identities=16% Similarity=0.075 Sum_probs=77.3
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCCCCChhH--------------
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDEDG-------------- 126 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~-p~~~vil~tp~p~~~~~-------------- 126 (177)
..+.|+|++.-|.-|..+-+ ..+.++|++||++++.++++-. |.+.+|+.+.+|+.+..
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~------~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~ 121 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQ------RNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSK 121 (183)
T ss_pred CCceeEEEEecceecccccC------CCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccc
Confidence 45679999999999998864 2589999999999999999854 67899998877754311
Q ss_pred --H---------HHHHHHhCCCceee--cccCCCCCCCCCCCccceeecccchhhhhhhhc
Q 030474 127 --R---------MEYAKYVNSSPYIN--CFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQL 174 (177)
Q Consensus 127 --~---------~~~~a~~~~vp~id--~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~~ 174 (177)
+ .+.++.++++-.+| ..+.....+...|| -|-+...+..|-||
T Consensus 122 ~lr~dv~eaN~~A~~va~~~~~dVlDLh~~fr~~~~~~~~Dg-----VHwn~~a~r~ls~l 177 (183)
T cd01842 122 SLRYDVLEGNFYSATLAKCYGFDVLDLHYHFRHAMQHRVRDG-----VHWNYVAHRRLSNL 177 (183)
T ss_pred cchhHHHHHHHHHHHHHHHcCceeeehHHHHHhHHhhcCCCC-----cCcCHHHHHHHHHH
Confidence 0 12345567777776 44556667788999 78888888887765
No 36
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=98.34 E-value=1.7e-06 Score=72.89 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=62.2
Q ss_pred EcccCCcchhhH-------HHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 38 LRGYGGYNTRWA-------LFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 38 N~G~~G~ts~~~-------l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
|.+++|..+.++ ..|+++...-.......+|+|.+|+||.+...........+.+++.+|+++-++.++...|
T Consensus 151 NvA~~Ga~s~Dlp~QAr~Lv~rik~~~~i~~~~dWKLi~IfIG~ND~c~~c~~~~~~~~~~~~~~~~i~~Al~~L~~nvP 230 (397)
T KOG3670|consen 151 NVAEPGAESEDLPDQARDLVSRIKKDKEINMKNDWKLITIFIGTNDLCAYCEGPETPPSPVDQHKRNIRKALEILRDNVP 230 (397)
T ss_pred ccccccccchhhHHHHHHHHHHHHhccCcccccceEEEEEEeccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 556667666553 3455554332234677899999999999876432223346889999999999999999999
Q ss_pred CCEEEEEcCCCC
Q 030474 111 IMLVVLITPPPV 122 (177)
Q Consensus 111 ~~~vil~tp~p~ 122 (177)
.+-|.+++++++
T Consensus 231 R~iV~lvg~~~~ 242 (397)
T KOG3670|consen 231 RTIVSLVGMFNV 242 (397)
T ss_pred ceEEEEecCCCH
Confidence 888888888775
No 37
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=97.71 E-value=0.00042 Score=57.87 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=72.1
Q ss_pred CceEEE--EecccCccccCCCChHHH--HHHHHc--ccCcEEEcccCCcchhhHHHhhcccCC--CCCCCCCcEEEE-Ee
Q 030474 2 RPQIVL--FGDSITQQSFGSAGWGAA--LADAYC--RKADVLLRGYGGYNTRWALFLLHHIFP--LDNSNPPVATTI-FF 72 (177)
Q Consensus 2 ~~~I~~--~GDSit~gg~~~~~w~~~--l~~~l~--~~~~v~N~G~~G~ts~~~l~~l~~~~~--~~~~~~pd~Vvi-~~ 72 (177)
..++++ +||++.. +|.+- |...+. ..+.|..++.++. .++....+...+. .....+++.+++ ++
T Consensus 37 a~~~lV~vvGD~~a~------~la~g~~l~~~~a~~p~v~v~~~~~~~l-vr~d~~dw~~~i~~~~~~~~~~~~vvv~mi 109 (327)
T PF04311_consen 37 ARRILVRVVGDFLAS------GLADGFYLQEAFADNPDVAVADRVNGSL-VRDDYYDWPEAIAASLIEAEKPAAVVVVMI 109 (327)
T ss_pred cceEEEeeccchhhh------hhhhhhHHHHHhccCCCeEEEeecCCCc-ccccccccHHHhhhhhhhccCCceEEEEEe
Confidence 346777 8999995 47666 777664 4566777766552 2221111111111 011356666666 99
Q ss_pred ccccccccCCCCCCccCCHHHHHHHHH-HHHHHHHHhCCCCEEEEEcCC-CCChhHHHHH-----------HHHhCCCce
Q 030474 73 GANDAALFGRTSERQHVPVEEYGDNLK-IMVQHLKRLSPIMLVVLITPP-PVDEDGRMEY-----------AKYVNSSPY 139 (177)
Q Consensus 73 G~ND~~~~~~~~~~~~~~~~~~~~nl~-~ii~~~r~~~p~~~vil~tp~-p~~~~~~~~~-----------~a~~~~vp~ 139 (177)
|.||.-.....++..+.-.+.+.+-|. ++...+++. +.+++.++.| +++.+...+. .++..+..|
T Consensus 110 G~nDrq~l~~gds~~~~~s~~W~~~Y~~r~~~~i~~~--~vp~~wvglPd~~~~~~~~~d~l~~n~~~yr~~a~~~g~~f 187 (327)
T PF04311_consen 110 GSNDRQQLRIGDSQMQFRSPEWLEEYGKRIAKVIREL--KVPSIWVGLPDYFRWPKMSADMLALNDILYRDAAEKAGGGF 187 (327)
T ss_pred ccCCCcccccCCcccccCCHHHHHHHHHHHHHHHHhc--CCCeEEEeCCcccCChhhhHHHHHhcchhHHHHHHHhcCcc
Confidence 999976543222222222333333332 255555655 5789999988 8877654322 344555666
Q ss_pred ee
Q 030474 140 IN 141 (177)
Q Consensus 140 id 141 (177)
+|
T Consensus 188 vD 189 (327)
T PF04311_consen 188 VD 189 (327)
T ss_pred cc
Confidence 65
No 38
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=97.65 E-value=0.00032 Score=55.87 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=43.3
Q ss_pred CCcEEEEEeccccccccCCCC---CCccCCHHHHHHHHHHHHHHHHHhC----CCCEEEEEcCCCCC
Q 030474 64 PPVATTIFFGANDAALFGRTS---ERQHVPVEEYGDNLKIMVQHLKRLS----PIMLVVLITPPPVD 123 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~---~~~~~~~~~~~~nl~~ii~~~r~~~----p~~~vil~tp~p~~ 123 (177)
+||+||+..|.-+.......+ .......+.|+.+++.+++.+++.. |..+|++.+.+|..
T Consensus 100 ~pdvvV~nsG~W~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h 166 (263)
T PF13839_consen 100 RPDVVVINSGLWYLRRSGFIEWGDNKEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVH 166 (263)
T ss_pred CCCEEEEEcchhhhhcchhcccCCCcCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCcc
Confidence 799999999999985311000 0122478999999999999988665 55788888766643
No 39
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=97.57 E-value=0.0004 Score=56.50 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCcEEEEEeccccccccCCCCCC-------ccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 64 PPVATTIFFGANDAALFGRTSER-------QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~-------~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+-++++|.+|+||.......... ...-..+..+++...++++.+.. ..+|++++.||+
T Consensus 102 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~G-Ar~ilv~~lppl 166 (281)
T cd01847 102 PNALYTVWIGGNDLIAALAALTTATTTQAAAVAAAATAAADLASQVKNLLDAG-ARYILVPNLPDV 166 (281)
T ss_pred CCeEEEEecChhHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEeCCCCc
Confidence 45889999999998743110000 00112445677778888888775 467888887764
No 40
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=97.55 E-value=0.00022 Score=61.36 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=63.3
Q ss_pred ceEEEEecccCccccC----------------CC------ChHHHHHHHHcccCcEEEcccCCcchhh------------
Q 030474 3 PQIVLFGDSITQQSFG----------------SA------GWGAALADAYCRKADVLLRGYGGYNTRW------------ 48 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~----------------~~------~w~~~l~~~l~~~~~v~N~G~~G~ts~~------------ 48 (177)
++|++||||++..|.. .| -|++.|+...-.+..-+|.+.+|.++..
T Consensus 143 ~ai~vFGDSlsDtGnn~y~~t~~~~PPyG~~ftGRFSNG~v~~DfLA~~pyl~~~G~NFA~GGA~~~t~~~~~~~~~~~~ 222 (408)
T PRK15381 143 TRLVFFGDSLSDSLGRMFEKTHHILPSYGQYFGGRFTNGFTWTEFLSSPHFLGKEMLNFAEGGSTSASYSCFNCIGDFVS 222 (408)
T ss_pred CeEEEeCCccccCCCccccccccCCCCCCCCCCcccCCCchhhheeccccccCCCCceEeecccccccccccccccCccC
Confidence 5799999999986321 01 3455554211011245688888876531
Q ss_pred -HHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 49 -ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 49 -~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+...++.... ..-++++|.+|.||..... ....+.....+..-|+++.+.. ..+|++.+.||+
T Consensus 223 ~L~~Qv~~~~~----~~~aL~lV~iG~NDy~~~~------~~~v~~vV~~~~~~l~~Ly~lG-ARk~vV~nlpPl 286 (408)
T PRK15381 223 NTDRQVASYTP----SHQDLAIFLLGANDYMTLH------KDNVIMVVEQQIDDIEKIISGG-VNNVLVMGIPDL 286 (408)
T ss_pred CHHHHHHHHHh----cCCcEEEEEeccchHHHhH------HHHHHHHHHHHHHHHHHHHHcC-CcEEEEeCCCCC
Confidence 1111222111 2448899999999976210 1134555666666667777664 567888887765
No 41
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.49 E-value=0.00032 Score=58.01 Aligned_cols=58 Identities=17% Similarity=0.044 Sum_probs=36.2
Q ss_pred CCcEEEEEeccccccccCCCCC----CccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 64 PPVATTIFFGANDAALFGRTSE----RQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~----~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+-.+++|.+|+||......... ....-.++..+++.+.|+++.+.. ..+|++++.||+
T Consensus 128 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~L~~~G-Ar~~~v~~lppl 189 (315)
T cd01837 128 SKSLFLISIGSNDYLNNYFANPTRQYEVEAYVPFLVSNISSAIKRLYDLG-ARKFVVPGLGPL 189 (315)
T ss_pred hCCEEEEEecccccHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHhCC-CcEEEecCCCCc
Confidence 4579999999999874321000 001113445666777777777664 566888888775
No 42
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=95.56 E-value=0.029 Score=45.35 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=48.3
Q ss_pred CCCcEEEEEeccccccccCC-------C----C---CCcc-----CCHHHHHHHHHHHHHHHHHhCCCCEEEE-EcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGR-------T----S---ERQH-----VPVEEYGDNLKIMVQHLKRLSPIMLVVL-ITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~-------~----~---~~~~-----~~~~~~~~nl~~ii~~~r~~~p~~~vil-~tp~p~ 122 (177)
.+.|++||.+|++=++.... + . .+.. .+.++..+.++.+++.+++.+|+++||+ ++|-|.
T Consensus 100 ~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilTVSPVrl 179 (251)
T PF08885_consen 100 EEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILTVSPVRL 179 (251)
T ss_pred HhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccchh
Confidence 57899999999988776531 1 1 1233 7889999999999999999999999988 566665
Q ss_pred Ch
Q 030474 123 DE 124 (177)
Q Consensus 123 ~~ 124 (177)
..
T Consensus 180 ~~ 181 (251)
T PF08885_consen 180 IA 181 (251)
T ss_pred hc
Confidence 43
No 43
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=91.68 E-value=1.1 Score=32.67 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCC---------hhHHH------HHHHHhCCCceeecccCCCCCCCCCCCccce
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVD---------EDGRM------EYAKYVNSSPYINCFLGRPPKYPQPIGKQQL 159 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~---------~~~~~------~~~a~~~~vp~id~~l~~~~~~l~~dG~~~~ 159 (177)
-+.++-+++.+++. +++|+++.+|--. .+.+. +.+++++++.++|-.=.....|.-.|-
T Consensus 35 y~Dl~l~L~~~k~~--g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~y~~yfm~D~---- 108 (130)
T PF04914_consen 35 YDDLQLLLDVCKEL--GIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDDEYEPYFMQDT---- 108 (130)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-TTGTTSTTSBSSS----
T ss_pred HHHHHHHHHHHHHc--CCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecccCCCCCceeeec----
Confidence 56789999999999 7999999766322 22222 345678899888844345556666776
Q ss_pred eecccchhh
Q 030474 160 FYHGGCSIC 168 (177)
Q Consensus 160 ~~~~~~~~~ 168 (177)
+|+|.++.
T Consensus 109 -iHlgw~GW 116 (130)
T PF04914_consen 109 -IHLGWKGW 116 (130)
T ss_dssp -SSB-THHH
T ss_pred -ccCchhhH
Confidence 89998875
No 44
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.48 E-value=3.3 Score=28.88 Aligned_cols=74 Identities=12% Similarity=-0.045 Sum_probs=47.6
Q ss_pred HHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHH
Q 030474 26 LADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQH 104 (177)
Q Consensus 26 l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~ 104 (177)
++..+ ..++++++.|.. -....+.+.+. ..+||+|.|+.- .......+.++++.
T Consensus 19 ~~~~l~~~G~~V~~lg~~-~~~~~l~~~~~-------~~~pdvV~iS~~-----------------~~~~~~~~~~~i~~ 73 (119)
T cd02067 19 VARALRDAGFEVIDLGVD-VPPEEIVEAAK-------EEDADAIGLSGL-----------------LTTHMTLMKEVIEE 73 (119)
T ss_pred HHHHHHHCCCEEEECCCC-CCHHHHHHHHH-------HcCCCEEEEecc-----------------ccccHHHHHHHHHH
Confidence 34444 468999998833 33333333322 268899988543 11234677888999
Q ss_pred HHHhCC-CCEEEEEcCCCCCh
Q 030474 105 LKRLSP-IMLVVLITPPPVDE 124 (177)
Q Consensus 105 ~r~~~p-~~~vil~tp~p~~~ 124 (177)
+|+..| +++|++-++++...
T Consensus 74 l~~~~~~~~~i~vGG~~~~~~ 94 (119)
T cd02067 74 LKEAGLDDIPVLVGGAIVTRD 94 (119)
T ss_pred HHHcCCCCCeEEEECCCCChh
Confidence 999987 78888888766543
No 45
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=87.59 E-value=7.9 Score=27.25 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=48.5
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEE--Ecc---cCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVL--LRG---YGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND 76 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~--N~G---~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND 76 (177)
++|.++|.|-..+ .|...+.+.+ ..+++++ |.. +.|..+ ...+.+ .+ .++|+++|.
T Consensus 1 ksiAVvGaS~~~~-----~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~---y~sl~e-~p----~~iDlavv~----- 62 (116)
T PF13380_consen 1 KSIAVVGASDNPG-----KFGYRVLRNLKAAGYEVYPVNPKGGEILGIKC---YPSLAE-IP----EPIDLAVVC----- 62 (116)
T ss_dssp -EEEEET--SSTT-----SHHHHHHHHHHHTT-EEEEESTTCSEETTEE----BSSGGG-CS----ST-SEEEE------
T ss_pred CEEEEEcccCCCC-----ChHHHHHHHHHhCCCEEEEECCCceEECcEEe---eccccC-CC----CCCCEEEEE-----
Confidence 5799999998753 5766666555 3344543 321 113222 122323 23 789999883
Q ss_pred ccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 77 AALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
++++. +.++++.+.+. +++-+++.+. .........++++++.++
T Consensus 63 ------------~~~~~----~~~~v~~~~~~--g~~~v~~~~g--~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 ------------VPPDK----VPEIVDEAAAL--GVKAVWLQPG--AESEELIEAAREAGIRVI 106 (116)
T ss_dssp ------------S-HHH----HHHHHHHHHHH--T-SEEEE-TT--S--HHHHHHHHHTT-EEE
T ss_pred ------------cCHHH----HHHHHHHHHHc--CCCEEEEEcc--hHHHHHHHHHHHcCCEEE
Confidence 24444 44555556666 4666666666 333334455666777776
No 46
>PLN03156 GDSL esterase/lipase; Provisional
Probab=83.09 E-value=3.8 Score=34.66 Aligned_cols=56 Identities=27% Similarity=0.256 Sum_probs=34.3
Q ss_pred cEEEEEeccccccccC--CCCCCccCCHHHHHH----HHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 66 VATTIFFGANDAALFG--RTSERQHVPVEEYGD----NLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 66 d~Vvi~~G~ND~~~~~--~~~~~~~~~~~~~~~----nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+.+|.+|+||..... ........++++|.. .+.+.|+++-+.. ..++++++.||+
T Consensus 159 sL~~i~iG~NDy~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~i~~Ly~~G-AR~~~V~~lppl 220 (351)
T PLN03156 159 ALYLISIGTNDFLENYYTFPGRRSQYTVSQYQDFLIGIAENFVKKLYRLG-ARKISLGGLPPM 220 (351)
T ss_pred CeEEEEecchhHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEecCCCcc
Confidence 5888999999986311 001112234555544 4445567777664 567888888776
No 47
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=81.75 E-value=3.5 Score=34.95 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=49.2
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc---cccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA---NDAA 78 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~---ND~~ 78 (177)
++.++++|||=+. .... ..+.+. .++..+.|...+|.+..-.+-.++++... .-+||.|++..-. |+..
T Consensus 63 kk~~~~fG~SRs~-~F~~----~~i~~~-~~dw~~yNFS~P~~~P~y~~y~le~i~~~--g~kPd~v~le~sp~~Fn~~s 134 (345)
T PF07611_consen 63 KKLLVVFGSSRSL-PFSN----EYIEKK-YPDWEVYNFSVPGGTPAYYLYWLEKILED--GIKPDFVILEVSPEGFNKNS 134 (345)
T ss_pred ceEEEEEecCccc-ccCh----HHHHhh-CCCCeEEEecCCCCchHHHHHHHHHHHhC--CCCCCEEEEEcCHhHhcCCc
Confidence 3569999999884 3311 233333 46899999999988877777777777653 3689999998754 6655
No 48
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.88 E-value=17 Score=27.96 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=42.6
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..++++++.|.+ -....+.+... ..+||+|.++.=. ......++++++.+|+..|
T Consensus 108 ~~G~~vi~lG~~-~p~~~l~~~~~-------~~~~d~v~lS~~~-----------------~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 108 ANGFEVIDLGRD-VPPEEFVEAVK-------EHKPDILGLSALM-----------------TTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred HCCCEEEECCCC-CCHHHHHHHHH-------HcCCCEEEEeccc-----------------cccHHHHHHHHHHHHHCCC
Confidence 468999998843 23333333322 3678998886431 1124568999999999977
Q ss_pred --CCEEEEEcCCC
Q 030474 111 --IMLVVLITPPP 121 (177)
Q Consensus 111 --~~~vil~tp~p 121 (177)
+++|++-++++
T Consensus 163 ~~~~~i~vGG~~~ 175 (201)
T cd02070 163 RDKVKVMVGGAPV 175 (201)
T ss_pred CcCCeEEEECCcC
Confidence 67777777644
No 49
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=76.91 E-value=11 Score=31.23 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+...+-++.++...|.-+|+..|++++++........+.+++..+.+|+|
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 114 ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 34455566667777777889999999999999998899999999999995
No 50
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.88 E-value=14 Score=25.47 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=46.5
Q ss_pred HHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHH
Q 030474 25 ALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQ 103 (177)
Q Consensus 25 ~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~ 103 (177)
.++..+. .++++...+.+-.. ....+. .. ..+||+|.++.-.. .....+.++++
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~-~~l~~~---~~----~~~pd~V~iS~~~~-----------------~~~~~~~~l~~ 73 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPP-EELVEA---LR----AERPDVVGISVSMT-----------------PNLPEAKRLAR 73 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-H-HHHHHH---HH----HTTCSEEEEEESSS-----------------THHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCH-HHHHHH---Hh----cCCCcEEEEEccCc-----------------CcHHHHHHHHH
Confidence 4555553 36777766554321 222222 22 26789988854311 12455688888
Q ss_pred HHHHhCCCCEEEEEcCCCCChh
Q 030474 104 HLKRLSPIMLVVLITPPPVDED 125 (177)
Q Consensus 104 ~~r~~~p~~~vil~tp~p~~~~ 125 (177)
.+|+..|+++|++-++.+...+
T Consensus 74 ~~k~~~p~~~iv~GG~~~t~~~ 95 (121)
T PF02310_consen 74 AIKERNPNIPIVVGGPHATADP 95 (121)
T ss_dssp HHHTTCTTSEEEEEESSSGHHH
T ss_pred HHHhcCCCCEEEEECCchhcCh
Confidence 8999999999999998875443
No 51
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=75.80 E-value=27 Score=28.03 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=53.6
Q ss_pred EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHH-HhCCCCEE
Q 030474 36 VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLK-RLSPIMLV 114 (177)
Q Consensus 36 v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r-~~~p~~~v 114 (177)
|...|+||.|....+. +..+ +.=+|.+| |..... -| .-+.++..+-+.++++.+. +. +++.
T Consensus 3 vfDSGiGGltv~~~l~---~~~p-------~~~~iy~~--D~~~~P--YG--~ks~~~i~~~~~~~~~~L~~~~--g~d~ 64 (251)
T TIGR00067 3 VFDSGVGGLSVLKEIR---KQLP-------KEHYIYVG--DTKRFP--YG--EKSPEFILEYVLELLTFLKERH--NIKL 64 (251)
T ss_pred EEeCCccHHHHHHHHH---HHCC-------CCCEEEEe--cCCCCC--CC--CCCHHHHHHHHHHHHHHHHHhC--CCCE
Confidence 5678999987654443 3333 33346667 444321 11 2489999999999999999 66 5777
Q ss_pred EEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 115 VLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 115 il~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
|++.-- .....+...+++...+|+|.
T Consensus 65 ivIaCN-TA~a~~~~~l~~~~~iPii~ 90 (251)
T TIGR00067 65 LVVACN-TASALALEDLQRNFDFPVVG 90 (251)
T ss_pred EEEeCc-hHHHHHHHHHHHHCCCCEEe
Confidence 776432 11223455555666777774
No 52
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=74.68 E-value=21 Score=28.97 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=64.8
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
+.+|.-.|-..........++.+..+ .+.+ .|.+|-.. ++++- +++++++.+- ++
T Consensus 108 ~~~vfllGgkp~V~~~a~~~l~~~~p-------~l~i--vg~h~GYf----------~~~e~----~~i~~~I~~s--~p 162 (253)
T COG1922 108 GKRVFLLGGKPGVAEQAAAKLRAKYP-------GLKI--VGSHDGYF----------DPEEE----EAIVERIAAS--GP 162 (253)
T ss_pred CceEEEecCCHHHHHHHHHHHHHHCC-------CceE--EEecCCCC----------ChhhH----HHHHHHHHhc--CC
Confidence 36666666555555556666655443 3333 36666443 22221 3888888887 56
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCcee-------e---cccCCCCCCCCCCCcc---ceeecc
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYI-------N---CFLGRPPKYPQPIGKQ---QLFYHG 163 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~i-------d---~~l~~~~~~l~~dG~~---~~~~~~ 163 (177)
.||+++..--.++.|..+-.+...++.. | ...++.|.|++..|.+ .|.-+|
T Consensus 163 dil~VgmG~P~QE~wi~~~~~~~~~~v~igVGg~fDv~sG~vkRAP~w~~~l~lEWlYRl~~eP 226 (253)
T COG1922 163 DILLVGMGVPRQEIWIARNRQQLPVAVAIGVGGSFDVFSGRVKRAPRWMQKLGLEWLYRLLLEP 226 (253)
T ss_pred CEEEEeCCCchhHHHHHHhHHhcCCceEEeccceEEEecCCcccchHHHHHhCCchhHHhhhCH
Confidence 7999988766677777665554543332 3 4446779999999987 455555
No 53
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=73.88 E-value=1.2 Score=35.06 Aligned_cols=76 Identities=13% Similarity=-0.005 Sum_probs=62.1
Q ss_pred EEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEec-cccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEE
Q 030474 37 LLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG-ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVV 115 (177)
Q Consensus 37 ~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G-~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vi 115 (177)
-| |+++.++...+++++..-. ....|..++...| +|--. -++++....+...+....+..|.+++|
T Consensus 54 cN-Gh~~c~t~~v~~~~~N~~~--g~~c~kc~~g~~GdtN~g~----------c~~~~~~g~~~~~~~~~~~c~c~~kgv 120 (217)
T KOG1388|consen 54 CN-GHSDCNTQHVCWRCENGTT--GAHCEKCIVGFYGDTNGGK----------CQPCDCNGGASACVTLTGKCFCTTKGV 120 (217)
T ss_pred hc-CCCCcccceeeeeccCccc--cccCCceEEEEEecCCCCc----------cCHhhhcCCeeeeeccCCccccccceE
Confidence 57 9999999999988765433 2467899999999 66643 478888999999999999999999999
Q ss_pred EEcCCCCChh
Q 030474 116 LITPPPVDED 125 (177)
Q Consensus 116 l~tp~p~~~~ 125 (177)
+-..-|..+.
T Consensus 121 vgd~c~~~e~ 130 (217)
T KOG1388|consen 121 VGDLCPKCEV 130 (217)
T ss_pred ecccCccccc
Confidence 9888776653
No 54
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=71.80 E-value=7.6 Score=26.92 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
++|.+||.+|++++++ .|+.+|-++.
T Consensus 4 ~~Fv~Nm~~Iv~~l~~-~~~~~I~iv~ 29 (103)
T PF06935_consen 4 PEFVENMKKIVERLRN-DPGEPIEIVD 29 (103)
T ss_pred HHHHHHHHHHHHHHHH-CCCCCEEEEE
Confidence 4799999999999986 3577776665
No 55
>PRK00955 hypothetical protein; Provisional
Probab=71.47 E-value=35 Score=31.31 Aligned_cols=104 Identities=10% Similarity=0.034 Sum_probs=58.2
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEE-EeccccccccC
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTI-FFGANDAALFG 81 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi-~~G~ND~~~~~ 81 (177)
-|++-||.... .+.-|...+.+.| ..+++|-+..-..+.... .+.+ ..+|+++++ ..|-=|.....
T Consensus 16 ~i~v~gdayvd---hp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~---~~~~------~g~P~l~~~vs~g~~dsmv~~ 83 (620)
T PRK00955 16 FILVTGDAYVD---HPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLE---DFKK------LGKPRLFFLVSAGNMDSMVNH 83 (620)
T ss_pred EEEEeCccccc---CCccHHHHHHHHHHHCCCEEEEecCCCcCChH---HHHh------hCCCcEEEEeccccHHHHHhh
Confidence 37888988775 2334666777777 467888666555554222 2222 257888775 55633443221
Q ss_pred C-------------CCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 82 R-------------TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 82 ~-------------~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
- +.+.....|+. ..-.+.+.+|+.+|+++||+-++-+.
T Consensus 84 yt~~~~~r~~d~ytpgg~~~~rpdr---a~i~y~~~ik~~~p~~~IvlGG~eaS 134 (620)
T PRK00955 84 YTASKKLRSKDAYSPGGKMGLRPDR---ATIVYCNKIKEAYPDVPIIIGGIEAS 134 (620)
T ss_pred cchhhhcccccccCCCCccCCCcch---HHHHHHHHHHHHCCCCcEEeCChhhh
Confidence 0 01111122221 22345577888889998888887554
No 56
>PRK03670 competence damage-inducible protein A; Provisional
Probab=70.92 E-value=8.9 Score=31.01 Aligned_cols=69 Identities=17% Similarity=0.060 Sum_probs=42.1
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+--|+.+||-+.. |.-.+.=...+++.+ ..++++.-..+-++......+.+.+... ...|+|++.-|+
T Consensus 1 m~a~Ii~iGdEll~-G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~----~~~DlVIttGGl 70 (252)
T PRK03670 1 MFAEIITVGDELLT-GNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILS----RKPEVLVISGGL 70 (252)
T ss_pred CEEEEEEeCCcCcC-CeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhh----CCCCEEEECCCc
Confidence 56679999999986 432221122344444 3467776666667666655665555432 356999988663
No 57
>PRK06524 biotin carboxylase-like protein; Validated
Probab=70.43 E-value=7 Score=34.77 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceeecccCCCCCCCCCCCccceeecccchhhh
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYINCFLGRPPKYPQPIGKQQLFYHGGCSICY 169 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~ 169 (177)
.+.+...++..|...++.+ ..+|.+++|+|++--...+.+....=+.|+|++-..||.-+.+--.-...|..-+-+|-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (493)
T PRK06524 11 QPRRVLNGLSDIRAFFHNN--TVPLYFISPTPFNLLGIDRWIRNFFYLTYYDSFDGEHPRVFVPRRRDRRDFDGMEDVCN 88 (493)
T ss_pred CccccccCHHHHHHHHhcC--CCceEEecCCCcccccHHHHhhceeEEEEEEecCCcCCcccCCCcCChhhhhhhHHHhh
Confidence 4556688888888888876 67899999999886544444444444666777666777666655555666777888888
Q ss_pred hhhh
Q 030474 170 FLLQ 173 (177)
Q Consensus 170 ~~~~ 173 (177)
+|||
T Consensus 89 ~~~~ 92 (493)
T PRK06524 89 YLLR 92 (493)
T ss_pred hhhc
Confidence 8887
No 58
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=67.40 E-value=40 Score=23.64 Aligned_cols=66 Identities=12% Similarity=-0.044 Sum_probs=42.4
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..++++++.|.. -......+. .. ..+||+|.|+.- ...+.+.++++++.+++..+
T Consensus 25 ~~G~~vi~lG~~-vp~e~~~~~---a~----~~~~d~V~iS~~-----------------~~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 25 DAGFEVIYTGLR-QTPEEIVEA---AI----QEDVDVIGLSSL-----------------SGGHMTLFPEVIELLRELGA 79 (122)
T ss_pred HCCCEEEECCCC-CCHHHHHHH---HH----HcCCCEEEEccc-----------------chhhHHHHHHHHHHHHhcCC
Confidence 468999998876 222232222 22 368899999533 23457778999999999855
Q ss_pred -CCEEEEEcCCC
Q 030474 111 -IMLVVLITPPP 121 (177)
Q Consensus 111 -~~~vil~tp~p 121 (177)
++++++-+..|
T Consensus 80 ~~i~i~~GG~~~ 91 (122)
T cd02071 80 GDILVVGGGIIP 91 (122)
T ss_pred CCCEEEEECCCC
Confidence 55555655444
No 59
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=66.77 E-value=20 Score=29.81 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=34.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|||..|...-.. ....+.+..| ++++++.+++..|++.+|+++-|
T Consensus 72 ~~adivIitag~~~k~g--------~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP 124 (315)
T PRK00066 72 KDADLVVITAGAPQKPG--------ETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNP 124 (315)
T ss_pred CCCCEEEEecCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 46799999998854321 1233444444 67778888988999998888843
No 60
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=66.21 E-value=48 Score=24.05 Aligned_cols=85 Identities=7% Similarity=-0.197 Sum_probs=50.7
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHh-C
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRL-S 109 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~-~ 109 (177)
..++++++.|..= ......+. .. ..+||+|.++.=.. .....++++++.+++. .
T Consensus 29 ~~G~eVi~LG~~v-p~e~i~~~---a~----~~~~d~V~lS~~~~-----------------~~~~~~~~~~~~L~~~~~ 83 (137)
T PRK02261 29 EAGFEVINLGVMT-SQEEFIDA---AI----ETDADAILVSSLYG-----------------HGEIDCRGLREKCIEAGL 83 (137)
T ss_pred HCCCEEEECCCCC-CHHHHHHH---HH----HcCCCEEEEcCccc-----------------cCHHHHHHHHHHHHhcCC
Confidence 4689999998762 12222222 22 37899999954321 2355667778888888 4
Q ss_pred CCCEEEEEcCCCCChhHHHH--HHHHhCCCcee
Q 030474 110 PIMLVVLITPPPVDEDGRME--YAKYVNSSPYI 140 (177)
Q Consensus 110 p~~~vil~tp~p~~~~~~~~--~~a~~~~vp~i 140 (177)
++.+|++-+.++..+..|.+ ...++.++.-+
T Consensus 84 ~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 84 GDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred CCCeEEEECCCCCCccChHHHHHHHHHcCCCEE
Confidence 47777888877666544442 22334554433
No 61
>PRK00865 glutamate racemase; Provisional
Probab=65.94 E-value=61 Score=26.04 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=52.9
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|...|+||.|.-..+ .+.++ +.=+|.+| |..+.. -| .-+.++..+.+.++++.+.+. ++
T Consensus 7 ~IgvfDSGiGGLtvl~~i---~~~lp-------~~~~iY~~--D~~~~P--YG--~ks~~~i~~~~~~~~~~L~~~--g~ 68 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREI---RRLLP-------DEHIIYVG--DTARFP--YG--EKSEEEIRERTLEIVEFLLEY--GV 68 (261)
T ss_pred eEEEEECCccHHHHHHHH---HHHCC-------CCCEEEEe--cCCCCC--CC--CCCHHHHHHHHHHHHHHHHhC--CC
Confidence 356788999998765433 33333 33345556 444321 11 258899999999999999987 56
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+.|++.-.-.. ..+...+++...+|.+.
T Consensus 69 d~iVIaCNTa~-~~~l~~lr~~~~iPvig 96 (261)
T PRK00865 69 KMLVIACNTAS-AVALPDLRERYDIPVVG 96 (261)
T ss_pred CEEEEeCchHH-HHHHHHHHHhCCCCEEe
Confidence 66666432111 11233344445566653
No 62
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=65.40 E-value=1.6 Score=30.00 Aligned_cols=16 Identities=38% Similarity=0.272 Sum_probs=12.7
Q ss_pred ceeecccchhhhhhhh
Q 030474 158 QLFYHGGCSICYFLLQ 173 (177)
Q Consensus 158 ~~~~~~~~~~~~~~~~ 173 (177)
.+.-||..-.||||||
T Consensus 88 aqe~hp~~~gyyFlLq 103 (105)
T cd01779 88 AQEEHPQEDGYYFLLQ 103 (105)
T ss_pred HHhcCCCcCceEEEEe
Confidence 3446888888999998
No 63
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=64.02 E-value=12 Score=30.48 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=44.9
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
+||+++|.|=.-| ..+.+.+. .+++++-.+.+-....+. +.+.+.+. ..+||+||-+.|..+.....
T Consensus 1 MriLI~GasG~lG--------~~l~~~l~~~~~~v~~~~r~~~dl~d~-~~~~~~~~---~~~pd~Vin~aa~~~~~~ce 68 (286)
T PF04321_consen 1 MRILITGASGFLG--------SALARALKERGYEVIATSRSDLDLTDP-EAVAKLLE---AFKPDVVINCAAYTNVDACE 68 (286)
T ss_dssp EEEEEETTTSHHH--------HHHHHHHTTTSEEEEEESTTCS-TTSH-HHHHHHHH---HH--SEEEE------HHHHH
T ss_pred CEEEEECCCCHHH--------HHHHHHHhhCCCEEEEeCchhcCCCCH-HHHHHHHH---HhCCCeEeccceeecHHhhh
Confidence 5788888654432 35666664 345555543332111111 12223332 25789999998876644321
Q ss_pred CCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcC
Q 030474 82 RTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp 119 (177)
..+...+.-| ...+.+.+++. ++++|.++.
T Consensus 69 ------~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~ST 101 (286)
T PF04321_consen 69 ------KNPEEAYAINVDATKNLAEACKER--GARLIHIST 101 (286)
T ss_dssp ------HSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEEE
T ss_pred ------hChhhhHHHhhHHHHHHHHHHHHc--CCcEEEeec
Confidence 1244455544 34555556655 689998874
No 64
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=63.48 E-value=17 Score=29.93 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|+..-.. +...+.+ ..-++++.+.+++..|++.+|+++-|
T Consensus 65 ~~aDiVIitag~p~~~~--------~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 65 ADADIVVITAGAPRKPG--------ETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred CCCCEEEEcCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 46799999999754321 1233333 34477788889999999998888843
No 65
>PRK05086 malate dehydrogenase; Provisional
Probab=63.44 E-value=24 Score=29.30 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
...|+|+++.|..--.. ....+.+.. -++++++.+++..|++.|++++ .|.
T Consensus 68 ~~~DiVIitaG~~~~~~--------~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs-NP~ 121 (312)
T PRK05086 68 EGADVVLISAGVARKPG--------MDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT-NPV 121 (312)
T ss_pred CCCCEEEEcCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-Cch
Confidence 45899999999732110 123444555 6888899999998876555555 444
No 66
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=63.39 E-value=34 Score=27.29 Aligned_cols=72 Identities=14% Similarity=0.016 Sum_probs=46.0
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..++++++.|..=- .+.|-.... ..+||+|..+ ........+++++++++++..-
T Consensus 130 ~aGfevidLG~dvP-----~e~fve~a~---e~k~d~v~~S-----------------alMTttm~~~~~viE~L~eeGi 184 (227)
T COG5012 130 AAGFEVIDLGRDVP-----VEEFVEKAK---ELKPDLVSMS-----------------ALMTTTMIGMKDVIELLKEEGI 184 (227)
T ss_pred hCCcEEEecCCCCC-----HHHHHHHHH---HcCCcEEech-----------------HHHHHHHHHHHHHHHHHHHcCC
Confidence 35788888875421 122211111 3678888762 2344556679999999999865
Q ss_pred CCEEEEE-cCCCCChhHH
Q 030474 111 IMLVVLI-TPPPVDEDGR 127 (177)
Q Consensus 111 ~~~vil~-tp~p~~~~~~ 127 (177)
.-+++++ +..|++++-+
T Consensus 185 Rd~v~v~vGGApvtq~~a 202 (227)
T COG5012 185 RDKVIVMVGGAPVTQDWA 202 (227)
T ss_pred ccCeEEeecCccccHHHH
Confidence 5667776 8888888643
No 67
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=62.79 E-value=33 Score=26.92 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=40.0
Q ss_pred CCceEEEEecccCccccCCCCh-----------HHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEE
Q 030474 1 MRPQIVLFGDSITQQSFGSAGW-----------GAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVAT 68 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w-----------~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~V 68 (177)
|++||+++|.|-........|+ .+.|-+.+ ...+++.-. .+..+..+|.+... .....|.|
T Consensus 1 ~~~KvL~iGESW~~~~~H~KGfDqF~s~~y~~GAd~Ll~~Lr~g~~dv~yM-----pAH~~q~~FPqtme--~L~~YDai 73 (254)
T COG5426 1 MTKKVLLIGESWVSHATHSKGFDQFTSVTYHEGADPLLKALRGGEYDVTYM-----PAHDAQEKFPQTME--GLDAYDAI 73 (254)
T ss_pred CceeEEEecceeeeeeeeccccccCcceecccCchHHHHHHhCCCcceEEe-----chHHHHHhcchhhh--hhcccceE
Confidence 7899999999943222111111 11222333 223443321 33445556655443 13457888
Q ss_pred EEE-eccccccccC
Q 030474 69 TIF-FGANDAALFG 81 (177)
Q Consensus 69 vi~-~G~ND~~~~~ 81 (177)
+|+ +|.|-.....
T Consensus 74 vlSDiGsNt~LL~~ 87 (254)
T COG5426 74 VLSDIGSNTLLLQP 87 (254)
T ss_pred EEeecCCceeeccc
Confidence 887 8999888764
No 68
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=62.71 E-value=76 Score=27.04 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=48.8
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc--ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~--~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
..||+++.||-.. ...+.+.+. .++.++..+.+|..+.+... ..+||+|++ |...
T Consensus 1 ~irVlvVddsal~--------R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~----------~~~PDVi~l-----d~em 57 (350)
T COG2201 1 KIRVLVVDDSALM--------RKVISDILNSDPDIEVVGTARNGREAIDKVK----------KLKPDVITL-----DVEM 57 (350)
T ss_pred CcEEEEEcCcHHH--------HHHHHHHHhcCCCeEEEEecCCHHHHHHHHH----------hcCCCEEEE-----eccc
Confidence 3689999999764 245666663 34778888888755443322 267899999 5443
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+..+-.+.++++.. . . .++||+++..
T Consensus 58 ----------p~mdgl~~l~~im~---~-~-p~pVimvssl 83 (350)
T COG2201 58 ----------PVMDGLEALRKIMR---L-R-PLPVIMVSSL 83 (350)
T ss_pred ----------ccccHHHHHHHHhc---C-C-CCcEEEEecc
Confidence 23333444444433 3 3 4778877753
No 69
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=61.89 E-value=20 Score=26.05 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|.-= .. + ....+.+ .+-++++.+.+++..|++.++++|-|
T Consensus 68 ~~aDivvitag~~~--~~----g--~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 68 KDADIVVITAGVPR--KP----G--MSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp TTESEEEETTSTSS--ST----T--SSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred ccccEEEEeccccc--cc----c--ccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 46799999888531 11 1 1123333 44467788888888999988887643
No 70
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=61.54 E-value=4.9 Score=29.15 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=41.1
Q ss_pred EEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 5 IVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 5 I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+.+||.+.. |.-.+.=...+++.+ ..++++...++-.+......+.+.+.+. +.|+|+..-|+
T Consensus 2 Ii~~GdEl~~-g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-----~~D~VittGG~ 66 (144)
T PF00994_consen 2 IISTGDELLS-GQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALD-----RADLVITTGGT 66 (144)
T ss_dssp EEEECHHHHT-TSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHH-----TTSEEEEESSS
T ss_pred EEEECccCcC-CceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhc-----cCCEEEEcCCc
Confidence 7889999996 322211123344444 3467777777777777777777755443 34999998875
No 71
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=61.18 E-value=24 Score=23.29 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=28.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+||++++-+...|.. ..++++.+++..|+.++|+++...-
T Consensus 42 ~~~d~iiid~~~~~~~-------------------~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGD-------------------GLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp STESEEEEESSSSSSB-------------------HHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred cCceEEEEEeeecccc-------------------ccccccccccccccccEEEecCCCC
Confidence 5689999976555521 2356667777778999999994443
No 72
>PLN00135 malate dehydrogenase
Probab=61.05 E-value=30 Score=28.83 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHh-CCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRL-SPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~-~p~~~vil~t 118 (177)
...|+|||..|...-.. ....+.+ .+-+++++..+.+. .|++.+|+++
T Consensus 57 ~daDiVVitAG~~~k~g--------~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvs 108 (309)
T PLN00135 57 KGVNIAVMVGGFPRKEG--------MERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVA 108 (309)
T ss_pred CCCCEEEEeCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 56799999999864321 1233333 34477888888885 8999988888
No 73
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=59.99 E-value=47 Score=29.38 Aligned_cols=42 Identities=14% Similarity=-0.043 Sum_probs=30.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+||+|.|+. . ++ ......++++.+|++.|+++||+-++.+.
T Consensus 62 ~~pdvVgis~-----~-----------t~--~~~~a~~~~~~~k~~~P~~~iV~GG~h~t 103 (497)
T TIGR02026 62 HCPDLVLITA-----I-----------TP--AIYIACETLKFARERLPNAIIVLGGIHPT 103 (497)
T ss_pred cCcCEEEEec-----C-----------cc--cHHHHHHHHHHHHHHCCCCEEEEcCCCcC
Confidence 6799999852 1 11 13456778899999999999999887654
No 74
>PTZ00325 malate dehydrogenase; Provisional
Probab=59.60 E-value=29 Score=29.05 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=32.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
...|+|++..|...... ....+.+.. .++++++.+++..|+. +|++...|+
T Consensus 75 ~gaDvVVitaG~~~~~~--------~tR~dll~~N~~i~~~i~~~i~~~~~~~-iviv~SNPv 128 (321)
T PTZ00325 75 RGADLVLICAGVPRKPG--------MTRDDLFNTNAPIVRDLVAAVASSAPKA-IVGIVSNPV 128 (321)
T ss_pred CCCCEEEECCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcH
Confidence 46799999999754321 112333444 6888999999998876 444444444
No 75
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=58.60 E-value=29 Score=28.66 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|||..|..-- .+ ....+.+..| ++++++.+++..|++.+|++|-|
T Consensus 63 ~daDivVitag~~rk--~g------~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 115 (299)
T TIGR01771 63 KDADLVVITAGAPQK--PG------ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNP 115 (299)
T ss_pred CCCCEEEECCCCCCC--CC------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 467999999886321 11 1233444444 67788888888999998888844
No 76
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=58.42 E-value=37 Score=29.53 Aligned_cols=89 Identities=16% Similarity=0.072 Sum_probs=49.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE-cCCCCCh-hHHHHHHHHhCCCcee
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI-TPPPVDE-DGRMEYAKYVNSSPYI 140 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~-tp~p~~~-~~~~~~~a~~~~vp~i 140 (177)
...|+++|+.||+=-. .+ ..+..-...-.+++.+.++ +..||++ +.-|+.- +...+.+.+...-.
T Consensus 75 ~~adv~fIavgTP~~~-dg------~aDl~~V~ava~~i~~~~~----~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-- 141 (414)
T COG1004 75 KDADVVFIAVGTPPDE-DG------SADLSYVEAVAKDIGEILD----GKAVVVIKSTVPVGTTEEVRAKIREENSGK-- 141 (414)
T ss_pred hcCCEEEEEcCCCCCC-CC------CccHHHHHHHHHHHHhhcC----CCeEEEEcCCCCCCchHHHHHHHHhhcccC--
Confidence 4689999999996433 11 1344444444444444444 4355554 3334433 33334444333222
Q ss_pred ecccCCCCCCCCCCCccceeeccc
Q 030474 141 NCFLGRPPKYPQPIGKQQLFYHGG 164 (177)
Q Consensus 141 d~~l~~~~~~l~~dG~~~~~~~~~ 164 (177)
+-.+..+|+||.+.-.-..|+||+
T Consensus 142 ~f~v~~NPEFLREG~Av~D~~~Pd 165 (414)
T COG1004 142 DFEVASNPEFLREGSAVYDFLYPD 165 (414)
T ss_pred CceEecChHHhcCcchhhhccCCC
Confidence 334556788887766667778875
No 77
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=58.03 E-value=17 Score=27.38 Aligned_cols=65 Identities=15% Similarity=-0.011 Sum_probs=39.1
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
.|+.+||.+.. |.-.+.=...|++.+ ..++++....+-++......+.+.+.. ...|+|++.-|+
T Consensus 3 ~Ii~~GdEl~~-G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~-----~~~dlVIttGG~ 68 (170)
T cd00885 3 EIIAIGDELLS-GQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS-----ERADLVITTGGL 68 (170)
T ss_pred EEEEECccccC-CeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-----hCCCEEEECCCC
Confidence 58899999986 322222223355544 346777666666666655555555543 357999888664
No 78
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=58.01 E-value=27 Score=28.27 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=42.0
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+..||+|+-..|| |....+ +-+.-.++++-+.+.=+.....+|+. +++|++++...
T Consensus 246 ef~Pd~VvYNAGT-DiLeGD-pLG~L~ISp~Gi~~RDelVFr~~R~~--~iPvvMltSGG 301 (324)
T KOG1344|consen 246 EFRPDMVVYNAGT-DILEGD-PLGNLAISPEGIIERDELVFRTFRAL--GIPVVMLTSGG 301 (324)
T ss_pred hhCCcEEEEeCCC-ccccCC-CCCCeeecccccchhhHHHHHHHHHc--CCcEEEEecCc
Confidence 5789999999998 655432 12334578888888888899999998 67888777543
No 79
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.62 E-value=32 Score=29.10 Aligned_cols=55 Identities=16% Similarity=0.007 Sum_probs=36.8
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
..+||+|+++.|. |....+. =+....+.+.|..--+.+.+..+.. +.+++++.=-
T Consensus 237 ~f~PdlvivsaG~-D~h~~Dp-l~~~~Lt~~~~~~~~~~v~~~a~~~--~~~~~~vleG 291 (340)
T COG0123 237 EFKPDLVIVSAGF-DAHRGDP-LGRLNLTEEGYAKIGRAVRKLAEGY--GGPVVAVLEG 291 (340)
T ss_pred hcCCCEEEEecCc-ccCCCCc-cceeecCHHHHHHHHHHHHHHHHhc--CCCeEEEecC
Confidence 5799999999997 6544321 1234567888888777777777765 4556555433
No 80
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=57.04 E-value=24 Score=27.58 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=26.8
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+||+|++ |....+ ...+..+.+.+++..|+++||++|...
T Consensus 52 ~~Dvvll-----Di~~p~-------------~~G~~~~~~~i~~~~p~~~vvvlt~~~ 91 (216)
T PRK10100 52 SGSIILL-----DMMEAD-------------KKLIHYWQDTLSRKNNNIKILLLNTPE 91 (216)
T ss_pred CCCEEEE-----ECCCCC-------------ccHHHHHHHHHHHhCCCCcEEEEECCc
Confidence 3899999 444321 123444446677888999999998764
No 81
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=56.43 E-value=38 Score=27.85 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++..|...-.. +...+.+..| ++++.+.+++..|++.+|+++-
T Consensus 67 ~~aDIVIitag~~~~~g--------~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 67 KDADIVVITAGAPQKPG--------ETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCEEEEccCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 57899999998743211 1233444444 6778888898999998888873
No 82
>PLN02629 powdery mildew resistance 5
Probab=56.40 E-value=7.4 Score=33.54 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=33.4
Q ss_pred CCcEEEEEeccc----------cccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCCCC
Q 030474 64 PPVATTIFFGAN----------DAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPV 122 (177)
Q Consensus 64 ~pd~Vvi~~G~N----------D~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~p~ 122 (177)
..|++|+.-|.- |....+...-........|+..|+.+.+-+.+.. .+.+|++.|..|.
T Consensus 205 ~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~ 275 (387)
T PLN02629 205 DADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPT 275 (387)
T ss_pred cCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcc
Confidence 569999988762 1111110000011124678888888888776542 2456888776664
No 83
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=56.13 E-value=34 Score=23.60 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
..+.++++.++++ ++++|++|..+-.
T Consensus 74 ~~~~~~~~~a~~~--g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKER--GAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHc--CCeEEEEcCCCCC
Confidence 3467777888888 6899999976543
No 84
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=56.12 E-value=18 Score=29.48 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=38.4
Q ss_pred hHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 030474 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (177)
Q Consensus 48 ~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~ 109 (177)
..++.++++.. -|.+-.|++|.||....-...+ ...-.++.+.++++++.++++.
T Consensus 156 ~a~~n~~~I~~-----~~gvd~i~~G~~Dls~slg~~~--~~~~pev~~ai~~v~~a~~~~G 210 (267)
T PRK10128 156 TALDNLDEILD-----VEGIDGVFIGPADLSASLGYPD--NAGHPEVQRIIETSIRRIRAAG 210 (267)
T ss_pred HHHHhHHHHhC-----CCCCCEEEECHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHcC
Confidence 34455555543 3578889999999987643222 2345678999999999999884
No 85
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=55.37 E-value=27 Score=28.38 Aligned_cols=68 Identities=19% Similarity=0.062 Sum_probs=43.2
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+=-|+++||-+-. |.-.+.=...|++.| ..++++.-.-+=|+.-....+.+.... .++|+||+.-|.
T Consensus 2 ~~a~iI~vG~ElL~-G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~-----~r~D~vI~tGGL 70 (255)
T COG1058 2 MKAEIIAVGDELLS-GRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREAS-----ERADVVITTGGL 70 (255)
T ss_pred ceEEEEEEccceec-CceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHH-----hCCCEEEECCCc
Confidence 34468999999997 432221223366555 457777666666777666666555544 348999998774
No 86
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=55.30 E-value=1.2e+02 Score=24.96 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=52.8
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|...|+||.|....+. +.++ +.=+|-+| |..... -| .-+.+++++...++++.+.+++ +
T Consensus 7 ~IgvFDSGVGGLsVlrei~---~~LP-------~e~~iY~~--D~a~~P--YG--~ks~e~I~~~~~~i~~~l~~~~--i 68 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIR---RQLP-------DEDIIYVG--DTARFP--YG--EKSEEEIRERTLEIVDFLLERG--I 68 (269)
T ss_pred eEEEEECCCCcHHHHHHHH---HHCC-------CCcEEEEe--cCCCCC--CC--CCCHHHHHHHHHHHHHHHHHcC--C
Confidence 4567889999987654333 3333 33344555 444321 11 2589999999999999999996 5
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+++++.--- ......+.++++..+|.|
T Consensus 69 k~lVIACNT-ASa~al~~LR~~~~iPVv 95 (269)
T COG0796 69 KALVIACNT-ASAVALEDLREKFDIPVV 95 (269)
T ss_pred CEEEEecch-HHHHHHHHHHHhCCCCEE
Confidence 555554221 122223344444555555
No 87
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=55.12 E-value=34 Score=24.35 Aligned_cols=65 Identities=15% Similarity=-0.027 Sum_probs=35.9
Q ss_pred EEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 5 IVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 5 I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+.+||.+.+++.-...-...+++.+ ..+.++...++-.+......+.+++.. ...|+|++.-|+
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~-----~~~dliittGG~ 67 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL-----ERADLVITTGGT 67 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH-----hCCCEEEEcCCC
Confidence 67899999974321111122344444 235666555555555554555555543 247988887664
No 88
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=55.05 E-value=99 Score=26.54 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=30.1
Q ss_pred CCCcEEEEEeccc-cccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 63 NPPVATTIFFGAN-DAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 63 ~~pd~Vvi~~G~N-D~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
...|+|+++++++ |.... ..+.....+-++.+.+ + .|+.-||+.|..|...
T Consensus 72 ~~ad~vii~Vpt~~~~k~~-------~~dl~~v~~v~~~i~~-~---~~g~lVV~~STv~pgt 123 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTN-------YFNTSSVESVIKDVVE-I---NPYAVMVIKSTVPVGF 123 (388)
T ss_pred cCCCEEEEeCCCCCccCCC-------CcChHHHHHHHHHHHh-c---CCCCEEEEeeecCCch
Confidence 5689999999987 33221 1344555555555544 3 3356667676555443
No 89
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.80 E-value=32 Score=31.40 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHh---------CCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 91 VEEYGDNLKIMVQHLKRL---------SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~---------~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.++-++.|++|++-+|.- .| --|+|++||........+.+|-+.+|||+.
T Consensus 309 ~DEAK~ELeEiVefLkdP~kftrLGGKLP-KGVLLvGPPGTGKTlLARAvAGEA~VPFF~ 367 (752)
T KOG0734|consen 309 VDEAKQELEEIVEFLKDPTKFTRLGGKLP-KGVLLVGPPGTGKTLLARAVAGEAGVPFFY 367 (752)
T ss_pred hHHHHHHHHHHHHHhcCcHHhhhccCcCC-CceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence 577789999999988752 44 248999999998887777777777777774
No 90
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=54.31 E-value=29 Score=28.74 Aligned_cols=87 Identities=16% Similarity=0.021 Sum_probs=47.6
Q ss_pred cEEEcccC-CcchhhHHHhhcccCCC-CCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 35 DVLLRGYG-GYNTRWALFLLHHIFPL-DNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 35 ~v~N~G~~-G~ts~~~l~~l~~~~~~-~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
..+|.... |.+-...+..+++.+.. ....+||+|+++.|. |....+ +-+...++.+.|....+.+.+.+.+.. .
T Consensus 209 ~~~NipL~~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~-D~~~~D-plg~~~lt~~~~~~~~~~~~~~a~~~~--~ 284 (311)
T PF00850_consen 209 YNLNIPLPPGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGF-DAHAGD-PLGGLNLTPEGYRELTRRLKSLAKRHC--I 284 (311)
T ss_dssp SEEEEEE-TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-S-TTBTTS-TT-SEBB-HHHHHHHHHHHHTTHSHHS--G
T ss_pred eeEecccccccchHHHHHHHhhccccchhcccCcEEEEccCc-ccchhc-cccCcCCCHHHHHHHHHHHHHHHHhcC--C
Confidence 34565554 33334444445443310 013689999999997 665443 123456788888888888888777663 3
Q ss_pred EEEEEcCCCCChh
Q 030474 113 LVVLITPPPVDED 125 (177)
Q Consensus 113 ~vil~tp~p~~~~ 125 (177)
+++++.=--.+.+
T Consensus 285 ~~v~vleGGY~~~ 297 (311)
T PF00850_consen 285 PVVSVLEGGYNPE 297 (311)
T ss_dssp CEEEEE-S-SSHH
T ss_pred cEEEEECCCCChh
Confidence 6766654444443
No 91
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=53.41 E-value=27 Score=28.95 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=34.3
Q ss_pred EEEecccccccc----CCCCCC----ccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 69 TIFFGANDAALF----GRTSER----QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 69 vi~~G~ND~~~~----~~~~~~----~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
++++|+||...- ++.+.. ....-..+..-++.+++.++++ +.+|-+|+-..-++
T Consensus 200 F~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~--g~~vsvCGe~a~~p 261 (293)
T PF02896_consen 200 FFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKA--GKPVSVCGEMASDP 261 (293)
T ss_dssp EEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHT--T-EEEEESGGGGSH
T ss_pred EEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhc--CcEEEEecCCCCCH
Confidence 578899998522 111111 1112345788899999999998 68899998655544
No 92
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=53.14 E-value=39 Score=28.06 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|..--. + ....+.+..| ++++++.+++..|++.+|+++-|
T Consensus 70 ~~adivvitaG~~~k~--g------~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 122 (312)
T cd05293 70 ANSKVVIVTAGARQNE--G------ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP 122 (312)
T ss_pred CCCCEEEECCCCCCCC--C------CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence 4679999999875321 1 1233344444 77788889999999988888743
No 93
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=53.12 E-value=1e+02 Score=23.65 Aligned_cols=68 Identities=15% Similarity=-0.017 Sum_probs=41.2
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS- 109 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~- 109 (177)
..+++|++.|.+= ....+.+.. . ..+||+|.++.-. . ....+++++++.+++..
T Consensus 110 ~~G~~vi~LG~~v-p~e~~v~~~----~---~~~pd~v~lS~~~-~----------------~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 110 ANGFDVIDLGRDV-PIDTVVEKV----K---KEKPLMLTGSALM-T----------------TTMYGQKDINDKLKEEGY 164 (197)
T ss_pred hCCcEEEECCCCC-CHHHHHHHH----H---HcCCCEEEEcccc-c----------------cCHHHHHHHHHHHHHcCC
Confidence 4689999988552 223333322 2 3788999986521 1 12445788999999883
Q ss_pred -CCCEEEEEcCCCCCh
Q 030474 110 -PIMLVVLITPPPVDE 124 (177)
Q Consensus 110 -p~~~vil~tp~p~~~ 124 (177)
++++|++-+ .++++
T Consensus 165 ~~~v~i~vGG-~~~~~ 179 (197)
T TIGR02370 165 RDSVKFMVGG-APVTQ 179 (197)
T ss_pred CCCCEEEEEC-hhcCH
Confidence 346666665 44444
No 94
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=53.05 E-value=27 Score=25.40 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=41.0
Q ss_pred eEEEEecccCccccCC------CChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGS------AGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~------~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||-+++-+... +.-...+++.+ ..++++...++-++......+.+++.. .+.|+|++.-|+
T Consensus 4 ~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-----~~~DliIttGG~ 76 (144)
T TIGR00177 4 AVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV-----DEADVVLTTGGT 76 (144)
T ss_pred EEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH-----hCCCEEEECCCC
Confidence 5788999999622111 11223344444 346778888887777666666665543 368999998664
No 95
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=52.87 E-value=50 Score=26.25 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC--CEEEEEcCCCCChhHHHHHHHHhCCCc
Q 030474 61 NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI--MLVVLITPPPVDEDGRMEYAKYVNSSP 138 (177)
Q Consensus 61 ~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~--~~vil~tp~p~~~~~~~~~~a~~~~vp 138 (177)
..++.|+|++++=.|=+- ++.+=.+.++...+-++..... .-+.++.|.|-- .+-.
T Consensus 101 ~~e~FdvIs~SLVLNfVP-----------~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv-----------~NSR 158 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVP-----------DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV-----------TNSR 158 (219)
T ss_pred cccceeEEEEEEEEeeCC-----------CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh-----------hccc
Confidence 356788888887665432 4666667777777777754210 115666666521 1223
Q ss_pred eeecccCCCCCCCCCCCccceeecccchhhhhhhhcc
Q 030474 139 YINCFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQLS 175 (177)
Q Consensus 139 ~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~~~ 175 (177)
|++. ..-.+.|...|...+.||-..|++|+|.+-+
T Consensus 159 y~~~--~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~ 193 (219)
T PF11968_consen 159 YMTE--ERLREIMESLGFTRVKYKKSKKLAYWLFRKS 193 (219)
T ss_pred ccCH--HHHHHHHHhCCcEEEEEEecCeEEEEEEeec
Confidence 3321 0112447788888888999999999887643
No 96
>PLN02199 shikimate kinase
Probab=52.84 E-value=56 Score=27.26 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 98 LKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+++..+.++...++..|+|++++........+.+++..+.+|+|
T Consensus 89 Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fID 132 (303)
T PLN02199 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 132 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 77777888877778899999999999998899999989999996
No 97
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.82 E-value=51 Score=27.52 Aligned_cols=49 Identities=4% Similarity=-0.101 Sum_probs=33.2
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhC-CCCEEEEEc
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLS-PIMLVVLIT 118 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~-p~~~vil~t 118 (177)
....|+|||..|...-.. ....+.+. +-++++...+.+.. |++.+|+++
T Consensus 76 ~~daDivvitaG~~~k~g--------~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 76 FKDADWALLVGAKPRGPG--------MERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred hCCCCEEEEeCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 356899999999753211 12333343 44778888888888 589888887
No 98
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=52.77 E-value=57 Score=29.02 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=40.7
Q ss_pred CCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 59 LDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 59 ~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
-++..+|.+|+++ |-++-- ....+..+.+.++++++.+|.+ ++-|++||-.|.+-
T Consensus 249 vGD~dkPklVfFf----DEAHLL-----F~da~kall~~ieqvvrLIRSK--GVGv~fvTQ~P~Di 303 (502)
T PF05872_consen 249 VGDLDKPKLVFFF----DEAHLL-----FNDAPKALLDKIEQVVRLIRSK--GVGVYFVTQNPTDI 303 (502)
T ss_pred CCCCCCceEEEEE----echhhh-----hcCCCHHHHHHHHHHHHHhhcc--CceEEEEeCCCCCC
Confidence 3567899998875 333311 1135678899999999999999 78999999877653
No 99
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=52.00 E-value=24 Score=28.39 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=36.9
Q ss_pred hHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 030474 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (177)
Q Consensus 48 ~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~ 109 (177)
..++.++++.. -|.+-.+++|.||....-...+ ...-.++...+.+++..+++..
T Consensus 149 ~av~n~~eI~a-----v~gvd~l~iG~~DLs~slG~~~--~~~~~~v~~a~~~v~~aa~a~G 203 (249)
T TIGR03239 149 KGVDNVDEIAA-----VDGVDGIFVGPSDLAAALGHLG--NPNHPDVQKAIRHIFDRAAAHG 203 (249)
T ss_pred HHHHhHHHHhC-----CCCCCEEEEChHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHcC
Confidence 34445555543 2567789999999987542111 1233568889999999999884
No 100
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=51.95 E-value=1.1e+02 Score=23.83 Aligned_cols=69 Identities=7% Similarity=-0.103 Sum_probs=44.7
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..+++|++.|..= ...++.+... ..+||+|.+++-.. .....++++++.+++..+
T Consensus 114 ~~G~~Vi~LG~~v-p~e~~v~~~~-------~~~~~~V~lS~~~~-----------------~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 114 NNGYEVIDLGVMV-PIEKILEAAK-------EHKADIIGLSGLLV-----------------PSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred hCCCEEEECCCCC-CHHHHHHHHH-------HcCCCEEEEccchh-----------------ccHHHHHHHHHHHHhcCC
Confidence 4689999998652 2233333222 36889999854321 235677889999998877
Q ss_pred CCEEEEEcCCCCChh
Q 030474 111 IMLVVLITPPPVDED 125 (177)
Q Consensus 111 ~~~vil~tp~p~~~~ 125 (177)
+++|++-+ .|++++
T Consensus 169 ~~~i~vGG-~~~~~~ 182 (213)
T cd02069 169 KIPLLIGG-AATSRK 182 (213)
T ss_pred CCeEEEEC-hhcCHH
Confidence 77766666 455554
No 101
>PLN02602 lactate dehydrogenase
Probab=51.76 E-value=45 Score=28.30 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=34.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|||..|..-- . + ....+.+..| ++++++.+++..|++.+|+++-|
T Consensus 104 ~daDiVVitAG~~~k--~----g--~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNP 156 (350)
T PLN02602 104 AGSDLCIVTAGARQI--P----G--ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP 156 (350)
T ss_pred CCCCEEEECCCCCCC--c----C--CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 567999999886321 1 1 1234445555 67888889988999988888843
No 102
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=51.38 E-value=64 Score=25.13 Aligned_cols=63 Identities=3% Similarity=-0.070 Sum_probs=41.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC-CChhHHHHHHHH
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP-VDEDGRMEYAKY 133 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p-~~~~~~~~~~a~ 133 (177)
.+.|-|||.+|..+..... -.|-.+.+.+..|...+++. ...++.++..+- .++..|...+.+
T Consensus 29 ~~~devII~IGSA~~s~t~-------~NPFTa~ER~~MI~~aL~e~-~~~rv~~ipi~D~~~~~~Wv~~V~~ 92 (196)
T PRK13793 29 QQSRYVILALGSAQMERNI-------KNPFLAIEREQMILSNFSLD-EQKRIRFVHVVDVYNDEKWVKQVKS 92 (196)
T ss_pred HhCCEEEEEEccCCCCCCC-------CCCCCHHHHHHHHHHhcchh-hcceEEEEecCCccchhHHHHHHHH
Confidence 4578999999998877653 35556677777777777643 246777776543 234567666544
No 103
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=51.00 E-value=27 Score=28.22 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=31.2
Q ss_pred CcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 030474 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~ 109 (177)
+.+-.+++|.||....-+..+ ...-.++...+.+++..+++..
T Consensus 168 ~gvd~l~iG~~DLs~slG~~~--~~~~~~v~~a~~~v~~aa~~~G 210 (256)
T PRK10558 168 EGVDGIFVGPSDLAAALGHLG--NASHPDVQKAIQHIFARAKAHG 210 (256)
T ss_pred CCCcEEEECHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHcC
Confidence 568889999999987542111 1233568888999999999884
No 104
>PLN02623 pyruvate kinase
Probab=50.94 E-value=71 Score=29.15 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=30.8
Q ss_pred EEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 69 TIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 69 vi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
.|++|-.|.... .+.++...-.+++++.+++. +.++++.|
T Consensus 344 gImIgrgDLgve--------lg~~~v~~~qk~Ii~~~~~~--gKpvivaT 383 (581)
T PLN02623 344 GAMVARGDLGAE--------LPIEEVPLLQEEIIRRCRSM--GKPVIVAT 383 (581)
T ss_pred EEEECcchhhhh--------cCcHHHHHHHHHHHHHHHHh--CCCEEEEC
Confidence 356677788764 56688899999999999998 45677655
No 105
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=50.92 E-value=76 Score=26.01 Aligned_cols=66 Identities=14% Similarity=0.289 Sum_probs=38.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHH
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAK 132 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a 132 (177)
..+|++++.+|..=-...+ -+...+.++..+..++|.+.+++.+|++ |+|+---|+..+.-.+++-
T Consensus 169 AGaDiiv~H~GlT~gG~~G---a~~~~sl~~a~~~~~~i~~aa~~v~~di-i~l~hGGPI~~p~D~~~~l 234 (268)
T PF09370_consen 169 AGADIIVAHMGLTTGGSIG---AKTALSLEEAAERIQEIFDAARAVNPDI-IVLCHGGPIATPEDAQYVL 234 (268)
T ss_dssp HT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT--EEEEECTTB-SHHHHHHHH
T ss_pred cCCCEEEecCCccCCCCcC---ccccCCHHHHHHHHHHHHHHHHHhCCCe-EEEEeCCCCCCHHHHHHHH
Confidence 4679999999875433221 1124689999999999999999999876 5566566766655444443
No 106
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=50.83 E-value=39 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
.+.+.++++.++++ +++||.+|..+.++
T Consensus 188 ~~~~~~~~~~ak~~--ga~iI~IT~~~~s~ 215 (278)
T PRK11557 188 RRELNLAADEALRV--GAKVLAITGFTPNA 215 (278)
T ss_pred CHHHHHHHHHHHHc--CCCEEEEcCCCCCc
Confidence 34466678888888 78999999766544
No 107
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=50.57 E-value=53 Score=27.35 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|..=- . + +...+.+.. -++++++.+++..|++.+|+++-|
T Consensus 67 ~daDivvitaG~~~k--~----g--~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 67 KGADVVVIPAGVPRK--P----G--MTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCEEEEeCCCCCC--C----C--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 567999999997311 1 1 123444444 467777788888999988887744
No 108
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.50 E-value=1e+02 Score=22.98 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee-------e---cccCCCCCCCCCCCcc
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI-------N---CFLGRPPKYPQPIGKQ 157 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i-------d---~~l~~~~~~l~~dG~~ 157 (177)
+..+++++.+.+. ++.+|+++...-.++.|..+.....+.+.+ | ...+..|.|++.-|.+
T Consensus 88 ~~~~~i~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP~w~~~~glE 157 (172)
T PF03808_consen 88 EEEEAIINRINAS--GPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVGGAFDFLAGKVKRAPKWMRRLGLE 157 (172)
T ss_pred hhHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECchhhhhccCcCccCHHHHHcCcH
Confidence 4456777778877 456888887766666777666665555432 2 3345667887777754
No 109
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=50.37 E-value=41 Score=27.77 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=32.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|+..-.. +...+.+ .+-++++++.+++..|+..||+++-|
T Consensus 68 ~~aDiVIitag~p~~~~--------~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP 120 (305)
T TIGR01763 68 ANSDIVVITAGLPRKPG--------MSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP 120 (305)
T ss_pred CCCCEEEEcCCCCCCcC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 56799999999854221 1223333 34456667778878888887777643
No 110
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=50.04 E-value=93 Score=27.12 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=39.9
Q ss_pred HhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHH--HHHHHHHHHHHhCCCCEEEEEcCCC--CChhH
Q 030474 51 FLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGD--NLKIMVQHLKRLSPIMLVVLITPPP--VDEDG 126 (177)
Q Consensus 51 ~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~--nl~~ii~~~r~~~p~~~vil~tp~p--~~~~~ 126 (177)
+.|++++. ...+.| |++++| |..+++. ...-.+..++.+ .+.+++++++++ +++|++=+|-. +++=.
T Consensus 202 ~~fD~lLe--I~k~yD-VtLSLG--DglRPG~--i~Da~D~aQi~EL~~lgeL~~rA~e~--gVQvMVEGPGHVPl~~I~ 272 (420)
T PF01964_consen 202 EHFDRLLE--IAKEYD-VTLSLG--DGLRPGC--IADATDRAQIQELIILGELVKRAREA--GVQVMVEGPGHVPLNQIE 272 (420)
T ss_dssp HTHHHHHH--HHTTTT--EEEE----TT--SS--GGGTT-HHHHHHHHHHHHHHHHHHHT--T--EEEEE-SB--GGGHH
T ss_pred HhHHHHHH--HHHHhC-eeEecc--cccCCCC--cCCCCcHHHHHHHHHHHHHHHHHHHC--CCeEEeeCCCCCCHHHHH
Confidence 44555443 123445 567888 7776541 111234455543 577889999998 79999999864 44433
Q ss_pred HHHHHHHh--CCCcee
Q 030474 127 RMEYAKYV--NSSPYI 140 (177)
Q Consensus 127 ~~~~~a~~--~~vp~i 140 (177)
.+-.++.+ +++||.
T Consensus 273 ~nv~lqK~lc~~APfY 288 (420)
T PF01964_consen 273 ANVKLQKRLCHGAPFY 288 (420)
T ss_dssp HHHHHHHHHTTT--EE
T ss_pred HHHHHHHHhcCCCCcc
Confidence 33333333 678887
No 111
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=50.00 E-value=36 Score=25.42 Aligned_cols=65 Identities=12% Similarity=-0.021 Sum_probs=39.5
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||++.+ ..+..+. .+++.+ ..+.++.-.++-.+......+.+++... ....|+|++.-|+
T Consensus 8 ~vit~~d~~~~-~~d~n~~--~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVIttGGt 73 (163)
T TIGR02667 8 AILTVSDTRTE-EDDTSGQ--YLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIA---DPDVQVILITGGT 73 (163)
T ss_pred EEEEEeCcCCc-cCCCcHH--HHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEECCCc
Confidence 36779999875 3443332 344444 2356776667666666655666655432 2468999998664
No 112
>PRK15029 arginine decarboxylase; Provisional
Probab=49.79 E-value=1e+02 Score=29.16 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=48.8
Q ss_pred eEEEEecccCccccCCCChHH----HHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 4 QIVLFGDSITQQSFGSAGWGA----ALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~----~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
+|+++=|-..... .|.. .+...+ ..++.+... .+| .+++..++. ..++|+|++ |..
T Consensus 2 kILIVDDD~~~~~----~~~~~i~~~L~~~Le~~G~eV~~a-~s~---~dAl~~l~~------~~~~DlVLL-----D~~ 62 (755)
T PRK15029 2 KVLIVESEFLHQD----TWVGNAVERLADALSQQNVTVIKS-TSF---DDGFAILSS------NEAIDCLMF-----SYQ 62 (755)
T ss_pred eEEEEeCCccccc----chhHHHHHHHHHHHHHCCCEEEEE-CCH---HHHHHHHHh------cCCCcEEEE-----ECC
Confidence 5888888774211 2433 344444 234565432 222 333333322 146899999 554
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
..+ .+.+ +.+.++++.+|++.++++||++|-.
T Consensus 63 LPd---------~dG~-~~~~ell~~IR~~~~~iPIIlLTar 94 (755)
T PRK15029 63 MEH---------PDEH-QNVRQLIGKLHERQQNVPVFLLGDR 94 (755)
T ss_pred CCC---------Cccc-hhHHHHHHHHHhhCCCCCEEEEEcC
Confidence 432 1111 2446788888887778999999844
No 113
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=49.61 E-value=62 Score=23.30 Aligned_cols=47 Identities=13% Similarity=-0.070 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC----ChhHHHHHHHHhCCCc
Q 030474 91 VEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV----DEDGRMEYAKYVNSSP 138 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~----~~~~~~~~~a~~~~vp 138 (177)
.......++.-++..++. +..+|++.+.... .+....+..+.+.++|
T Consensus 19 ~~~~~~R~~~a~~L~~~g-~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp 69 (155)
T PF02698_consen 19 SPESRERLDEAARLYKAG-YAPRILFSGGYGHGDGRSEAEAMRDYLIELGVP 69 (155)
T ss_dssp --S-HHHHHHHHHHHH-H-HT--EEEE--SSTTHTS-HHHHHHHHHHHT---
T ss_pred cHhHHHHHHHHHHHHhcC-CCCeEEECCCCCCCCCCCHHHHHHHHHHhcccc
Confidence 334667788888888875 3556777764433 3444455555545655
No 114
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.44 E-value=42 Score=31.62 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHHh---------CCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 90 PVEEYGDNLKIMVQHLKRL---------SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~---------~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
..++.++-++++|+-++.- .| --++|++||-.......+.+|-+.+|||+
T Consensus 315 G~deAK~El~E~V~fLKNP~~Y~~lGAKiP-kGvLL~GPPGTGKTLLAKAiAGEAgVPF~ 373 (774)
T KOG0731|consen 315 GVDEAKEELMEFVKFLKNPEQYQELGAKIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 373 (774)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHcCCcCc-CceEEECCCCCcHHHHHHHHhcccCCcee
Confidence 4577889999999876632 33 33799999999999988999999999998
No 115
>PRK00549 competence damage-inducible protein A; Provisional
Probab=48.62 E-value=36 Score=29.55 Aligned_cols=68 Identities=16% Similarity=0.026 Sum_probs=42.0
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+-.|+.+||-+.. |.-.+.=...+++.+ ..++++...++-++......+.+.+.. ...|+|++.-|+
T Consensus 1 m~~~ii~~G~Ell~-G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~-----~~~DlVItTGGl 69 (414)
T PRK00549 1 MKAEIIAVGTELLL-GQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAE-----ERSDLIITTGGL 69 (414)
T ss_pred CEEEEEEecccccC-CceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhc-----cCCCEEEECCCC
Confidence 66679999999996 321111112344444 346777776666776665555555432 467999998654
No 116
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.51 E-value=21 Score=30.45 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCCCCCh------h----------------HHHHHHHHhCCCcee-ecccC
Q 030474 93 EYGDNLKIMVQ-HLKRLSPIMLVVLITPPPVDE------D----------------GRMEYAKYVNSSPYI-NCFLG 145 (177)
Q Consensus 93 ~~~~nl~~ii~-~~r~~~p~~~vil~tp~p~~~------~----------------~~~~~~a~~~~vp~i-d~~l~ 145 (177)
+.++..+++.+ +..+.-|++.+|+..|+...- + ..-+.+|++++||.+ |.+|.
T Consensus 243 r~Rq~~re~a~~rm~~~Vp~AdvVItNPTH~AVAlkY~~~~~~AP~VvAKG~d~~AlkIreiA~e~~Ipi~enppLA 319 (363)
T COG1377 243 RIRQMQREIARRRMMSDVPKADVVITNPTHYAVALKYDPEKMPAPVVVAKGVDLVALKIREIAKEHGIPIIENPPLA 319 (363)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCEEeeCcCceeeeeeeccccCCCCEEEEeCCcHHHHHHHHHHHHcCCceecChHHH
Confidence 34444444443 456668999999999985421 1 123667899999999 54443
No 117
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=48.05 E-value=1e+02 Score=22.17 Aligned_cols=71 Identities=15% Similarity=-0.012 Sum_probs=42.4
Q ss_pred HHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHH
Q 030474 26 LADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQH 104 (177)
Q Consensus 26 l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~ 104 (177)
++..| ..+++|++.|.-- +.....+ ... ..++|+|.|+. ....+.+.+..+++.
T Consensus 22 v~~~l~~~GfeVi~lg~~~-s~e~~v~---aa~----e~~adii~iSs-----------------l~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 22 IATAYADLGFDVDVGPLFQ-TPEEIAR---QAV----EADVHVVGVSS-----------------LAGGHLTLVPALRKE 76 (132)
T ss_pred HHHHHHhCCcEEEECCCCC-CHHHHHH---HHH----HcCCCEEEEcC-----------------chhhhHHHHHHHHHH
Confidence 33444 4589999988652 2222222 222 26789988821 234567889999999
Q ss_pred HHHhCC-CCEEEEEcCCC
Q 030474 105 LKRLSP-IMLVVLITPPP 121 (177)
Q Consensus 105 ~r~~~p-~~~vil~tp~p 121 (177)
++++.+ ..+|++-+-+|
T Consensus 77 L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 77 LDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHhcCCCCCEEEEeCCCC
Confidence 999765 34444433333
No 118
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.70 E-value=51 Score=27.73 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=34.7
Q ss_pred EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEE
Q 030474 36 VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVV 115 (177)
Q Consensus 36 v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vi 115 (177)
++|.+++ ++.+..++...++.. ...+|+|.| |+.... .+.+.++|+.+|+++|+..|+
T Consensus 87 ~v~~~vg--~~~~~~~~~~~Lv~a--g~~~d~i~i-----D~a~gh-------------~~~~~e~I~~ir~~~p~~~vi 144 (326)
T PRK05458 87 IASISVG--VKDDEYDFVDQLAAE--GLTPEYITI-----DIAHGH-------------SDSVINMIQHIKKHLPETFVI 144 (326)
T ss_pred EEEEEec--CCHHHHHHHHHHHhc--CCCCCEEEE-----ECCCCc-------------hHHHHHHHHHHHhhCCCCeEE
Confidence 4454444 234445666666541 014588877 655432 456667788888888876665
Q ss_pred E
Q 030474 116 L 116 (177)
Q Consensus 116 l 116 (177)
.
T Consensus 145 ~ 145 (326)
T PRK05458 145 A 145 (326)
T ss_pred E
Confidence 5
No 119
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=47.51 E-value=41 Score=22.12 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCh-----hHHHHHHHHhCCCcee
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPVDE-----DGRMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~~~-----~~~~~~~a~~~~vp~i 140 (177)
.+++.+++. ....|+.+|.|... ..+.++.|.+.++|++
T Consensus 46 ~i~~~i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 477777776 68888888876332 3456788889999985
No 120
>PLN02674 adenylate kinase
Probab=47.37 E-value=62 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 111 IMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 111 ~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
..+|++++||........+.+++++++++|.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4679999999999988888999999998883
No 121
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=47.34 E-value=1.2e+02 Score=26.63 Aligned_cols=72 Identities=11% Similarity=-0.074 Sum_probs=43.3
Q ss_pred HHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHH
Q 030474 24 AALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQ 103 (177)
Q Consensus 24 ~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~ 103 (177)
..+++.+. ++.++..-....+..+..+ . ..+||+|.|..- .. . .....++++
T Consensus 38 ~ylAa~l~-~~~iiD~~~~~~~~~~~~~----~-----~~~~Dlv~is~~-----t~---------~----~~~~~~ia~ 89 (472)
T TIGR03471 38 AQPAAMIP-GSRLVDAPPHGVTIDDTLA----I-----AKDYDLVVLHTS-----TP---------S----FPSDVKTAE 89 (472)
T ss_pred HHHHHhcc-CceEEeCCcccCCHHHHHH----H-----hcCCCEEEEECC-----Cc---------c----hHHHHHHHH
Confidence 34565553 4666665444443333222 1 146899988421 10 1 234556789
Q ss_pred HHHHhCCCCEEEEEcCCCCC
Q 030474 104 HLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 104 ~~r~~~p~~~vil~tp~p~~ 123 (177)
.+|+++|+++||+-++.+..
T Consensus 90 ~iK~~~p~~~vv~GG~h~t~ 109 (472)
T TIGR03471 90 ALKEQNPATKIGFVGAHVAV 109 (472)
T ss_pred HHHHhCCCCEEEEECCCccc
Confidence 99999999999999987643
No 122
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=46.74 E-value=58 Score=27.11 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|..-- .+ +...+.+.. -++++++.+++..|++.+|+++-|
T Consensus 66 ~daDivvitaG~~~~--~g------~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 66 KGADVVVIPAGVPRK--PG------MTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCCCEEEEeCCCCCC--CC------ccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 567999999996321 11 123333433 466777788888899987777744
No 123
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=46.52 E-value=70 Score=26.76 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCC-CCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSP-IMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p-~~~vil~tp~p~ 122 (177)
...|+|||..|...-. + +...+.+ .+-+++++..+.+..| ++.+++++ -|+
T Consensus 78 ~daDvVVitAG~~~k~--g------~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPv 132 (323)
T TIGR01759 78 KDVDAALLVGAFPRKP--G------MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG-NPA 132 (323)
T ss_pred CCCCEEEEeCCCCCCC--C------CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-CcH
Confidence 5679999999975321 1 1233333 3447788888888887 88888887 444
No 124
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=46.49 E-value=50 Score=25.05 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=39.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC-------CCChhHHHHHHHHhC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP-------PVDEDGRMEYAKYVN 135 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~-------p~~~~~~~~~~a~~~ 135 (177)
...|.+++.+-..|.. ..++++..++.+++..|++++||++-= .+..+ ..+..++..
T Consensus 77 ~~ad~illVfD~t~~~---------------Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~-~~~~~a~~~ 140 (189)
T cd04121 77 RGAQGIILVYDITNRW---------------SFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATE-QAQAYAERN 140 (189)
T ss_pred cCCCEEEEEEECcCHH---------------HHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHH-HHHHHHHHc
Confidence 4679999988876643 244455666666666678889998721 22222 234455667
Q ss_pred CCceee
Q 030474 136 SSPYIN 141 (177)
Q Consensus 136 ~vp~id 141 (177)
+++|+.
T Consensus 141 ~~~~~e 146 (189)
T cd04121 141 GMTFFE 146 (189)
T ss_pred CCEEEE
Confidence 788874
No 125
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=46.10 E-value=52 Score=26.25 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=45.4
Q ss_pred hhhHHHhhcccCCCCCCCCCcEEEEE-----ecc-ccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 46 TRWALFLLHHIFPLDNSNPPVATTIF-----FGA-NDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 46 s~~~l~~l~~~~~~~~~~~pd~Vvi~-----~G~-ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
+....+.+.++.. .=|+++|. +|+ ||....-..-.+.-.|+..--+.+.+|.+.+++..+ -++||+..
T Consensus 102 ~~~~f~klK~iW~-----~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I~~~i~~~~~-~~LiLiaL 175 (225)
T PF08759_consen 102 SARYFEKLKQIWK-----DRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIKKYAK-DKLILIAL 175 (225)
T ss_pred HHHHHHHHHHHhC-----CCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHHHHHHHHhCC-CcEEEEec
Confidence 3444456666653 23788887 344 776543211112234677778889999999998864 46888777
Q ss_pred CCCCh
Q 030474 120 PPVDE 124 (177)
Q Consensus 120 ~p~~~ 124 (177)
-|...
T Consensus 176 GPTAt 180 (225)
T PF08759_consen 176 GPTAT 180 (225)
T ss_pred CCcch
Confidence 77654
No 126
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.87 E-value=62 Score=23.66 Aligned_cols=67 Identities=10% Similarity=-0.067 Sum_probs=39.2
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
.|+.+||=++. |.-.+.....+++.+ ..++++.-.++-.+......+.+++... ..+.|+|+..-|+
T Consensus 4 ~ii~~~~e~~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~---~~~~DlVittGG~ 71 (152)
T cd00886 4 AVLTVSDTRSA-GEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWAD---EDGVDLILTTGGT 71 (152)
T ss_pred EEEEEcCcccC-CCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHh---cCCCCEEEECCCc
Confidence 47789998886 332223333455555 3456666666666655555555554432 1268988887654
No 127
>PRK00131 aroK shikimate kinase; Reviewed
Probab=45.75 E-value=49 Score=23.93 Aligned_cols=32 Identities=13% Similarity=-0.093 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 110 PIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 110 p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+...|++++++........+.+++..+++++|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34568889999999999999999989999995
No 128
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=45.20 E-value=30 Score=24.24 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=33.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~ 125 (177)
.+||+|.++. .. . .+ ....++++.+|++.|+++|++-++.+...+
T Consensus 38 ~~pdiv~~S~-----~~----------~--~~-~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p 82 (127)
T cd02068 38 LKPDVVGISL-----MT----------S--AI-YEALELAKIAKEVLPNVIVVVGGPHATFFP 82 (127)
T ss_pred cCCCEEEEee-----cc----------c--cH-HHHHHHHHHHHHHCCCCEEEECCcchhhCH
Confidence 5789998862 11 1 11 267889999999999999999888776443
No 129
>PRK10494 hypothetical protein; Provisional
Probab=45.07 E-value=1.6e+02 Score=23.69 Aligned_cols=73 Identities=8% Similarity=-0.027 Sum_probs=35.9
Q ss_pred cchhhHHHhhcccCCC-CCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 44 YNTRWALFLLHHIFPL-DNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 44 ~ts~~~l~~l~~~~~~-~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
..+..++..++...+. ....+.|.|||.-|+....-... .. ........+.+.+-++..|+ +|+.+||+.+-.
T Consensus 57 ~~~~~Ll~~LE~~y~~~~~~~~~d~IVVLGgG~~~~~~~~-~~--~~l~~~~~~Rl~~a~~L~r~-~~~~~ii~SGg~ 130 (259)
T PRK10494 57 PVADRLLRPIESRYPTWNGSQKVDYIVVLGGGYTWNPQWA-PS--SNLINNSLPRLTEGIRLWRA-NPGAKLIFTGGA 130 (259)
T ss_pred HHHHHHHHHHhcccCCCCCCCCCCEEEEcCCCcCCCCCCC-Cc--HhHhhhHHHHHHHHHHHHHh-CCCCEEEEECCC
Confidence 3445555556543321 11245688887765422111100 00 00111223667777777775 457788888743
No 130
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=44.82 E-value=26 Score=23.44 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCChhH-----HHHHHHHhCCCcee
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPVDEDG-----RMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~~~~~-----~~~~~a~~~~vp~i 140 (177)
++++.+++. .+.+|+.+|.|..+.. ..++.|.+++||++
T Consensus 51 ~i~~~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 788888877 7889999998865533 34677889999985
No 131
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=44.59 E-value=43 Score=28.47 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=31.0
Q ss_pred hHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 030474 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVL 116 (177)
Q Consensus 48 ~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil 116 (177)
+-.+|++.++.. ...+|+|+| |..+. ..++..++|+.+|+.+|+..||.
T Consensus 108 ~d~er~~~L~~~--~~g~D~ivi-----D~AhG-------------hs~~~i~~ik~ik~~~P~~~vIa 156 (346)
T PRK05096 108 ADFEKTKQILAL--SPALNFICI-----DVANG-------------YSEHFVQFVAKAREAWPDKTICA 156 (346)
T ss_pred HHHHHHHHHHhc--CCCCCEEEE-----ECCCC-------------cHHHHHHHHHHHHHhCCCCcEEE
Confidence 445566655531 135677777 66553 35667778888888888766543
No 132
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.48 E-value=1.5e+02 Score=23.22 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=61.8
Q ss_pred eEEEEecccCccccC------CCChHHHHHHHHcccCcEEEcccCCcch------hhHHHhhcccCCCCCCCCCcEEEEE
Q 030474 4 QIVLFGDSITQQSFG------SAGWGAALADAYCRKADVLLRGYGGYNT------RWALFLLHHIFPLDNSNPPVATTIF 71 (177)
Q Consensus 4 ~I~~~GDSit~gg~~------~~~w~~~l~~~l~~~~~v~N~G~~G~ts------~~~l~~l~~~~~~~~~~~pd~Vvi~ 71 (177)
||+++|||=+ |=.- .+.|++...+...-++...+.-+-|.+. ....+|+..+... --...+-||+.
T Consensus 11 KiiliGds~V-GKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~s-yYR~ahGii~v 88 (205)
T KOG0084|consen 11 KIILIGDSGV-GKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSS-YYRGAHGIIFV 88 (205)
T ss_pred EEEEECCCCc-ChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHh-hccCCCeEEEE
Confidence 7999999977 3111 1234433332222122233333335331 1122666655431 01246777776
Q ss_pred eccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCCCCChh------HHHHHHHHhCCCc-eee
Q 030474 72 FGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDED------GRMEYAKYVNSSP-YIN 141 (177)
Q Consensus 72 ~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~-p~~~vil~tp~p~~~~------~~~~~~a~~~~vp-~id 141 (177)
+-. +-.+..+|+..-++.+++.. +++.++|++---=..+ .-.+..|.++++| |+-
T Consensus 89 yDi---------------T~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~E 151 (205)
T KOG0084|consen 89 YDI---------------TKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLE 151 (205)
T ss_pred EEc---------------ccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceee
Confidence 532 33456677888888887753 3446777764321111 1234556778888 663
No 133
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.95 E-value=80 Score=26.40 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=32.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHh-CCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRL-SPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~-~p~~~vil~t 118 (177)
...|+||+..|..+--. +...+.+ .+-++++...+++. .|++.+|+++
T Consensus 75 ~~aDiVVitAG~~~~~g--------~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 75 KDVDVAILVGAFPRKPG--------MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred CCCCEEEEeCCCCCCcC--------CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 46799999999753221 1223333 34477888888888 4999888887
No 134
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=43.75 E-value=55 Score=28.55 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=55.4
Q ss_pred EEEEeccccccccCCCCCCccCCHHHHHH--HHHHHHHHHHHhCCCCEEEEEcCCCCChhHH--HHHHHH--hCCCceee
Q 030474 68 TTIFFGANDAALFGRTSERQHVPVEEYGD--NLKIMVQHLKRLSPIMLVVLITPPPVDEDGR--MEYAKY--VNSSPYIN 141 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~--nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~--~~~~a~--~~~vp~id 141 (177)
|++++| |..+++- ...-.+..++.+ .+.+++++++++ +++|++=+|-.+.-.+. +-..+. -+++||.-
T Consensus 220 VtlSLG--DglRPG~--i~Da~D~aQi~El~~lgeL~~RA~e~--gVQvMVEGPGHvPl~~I~~nv~l~K~lc~~APfYv 293 (431)
T PRK13352 220 VTLSLG--DGLRPGC--IADATDRAQIQELITLGELVKRAREA--GVQVMVEGPGHVPLDQIEANVKLQKRLCHGAPFYV 293 (431)
T ss_pred eeeecc--CCcCCCc--cccCCcHHHHHHHHHHHHHHHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHHHhhCCCCcee
Confidence 678888 7776541 111234555544 577888999988 79999999875544332 222222 25688872
Q ss_pred -cccCC--CCCC---CCCCCccceeecccchhhhh
Q 030474 142 -CFLGR--PPKY---PQPIGKQQLFYHGGCSICYF 170 (177)
Q Consensus 142 -~~l~~--~~~~---l~~dG~~~~~~~~~~~~~~~ 170 (177)
-+|.. .+-| -++-|-..--+||.+-+||.
T Consensus 294 LGPLvTDiApGYDHIt~AIGgAiAa~~GAdfLCYV 328 (431)
T PRK13352 294 LGPLVTDIAPGYDHITSAIGGAIAAAAGADFLCYV 328 (431)
T ss_pred cCccccccCCCchHHHHHHHHHHHHhcCCCeEEec
Confidence 33322 1222 23333334557777777774
No 135
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=43.66 E-value=45 Score=28.97 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=42.4
Q ss_pred CCceEEEEecccCcccc-CCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 1 MRPQIVLFGDSITQQSF-GSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~-~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+--|+.+||-+..|-. +..+ ..+++.+ ..++++.-..+-++......+.+.+.. .+.|+|++.-|+
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~--~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~-----~~~DlVIttGGl 69 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNA--QWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIAS-----ERADVLIFNGGL 69 (413)
T ss_pred CEEEEEEECccccCCcEEEchH--HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHh-----cCCCEEEEcCCC
Confidence 66678999999986321 2222 2344444 346777777777777666666555443 468999998663
No 136
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=43.28 E-value=37 Score=26.40 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 88 HVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 88 ~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+-+|+++...+.++|+..+++...-+|+|++-+
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRVVLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 358999999999999999999888899999854
No 137
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=42.82 E-value=76 Score=26.44 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCC-CEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPI-MLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~-~~vil~tp~p~ 122 (177)
...|+|+|..|...-.. +...+.+..| +++++..+.+..|+ +.||+++ -|+
T Consensus 59 ~daDiVVitaG~~~k~g--------~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvt-NPv 113 (313)
T TIGR01756 59 KDIDCAFLVASVPLKPG--------EVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIG-NPV 113 (313)
T ss_pred CCCCEEEECCCCCCCcC--------CCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-Cch
Confidence 56799999999754321 1233434444 67777788887744 6677776 444
No 138
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=42.64 E-value=1.6e+02 Score=24.41 Aligned_cols=62 Identities=27% Similarity=0.198 Sum_probs=36.4
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
.++++.||.=+.+ = ..+.+.. .-..+|.-.|.-|..+......+++ -+|.+.+|+.|-|...
T Consensus 183 ~s~LlTGD~e~~~------E-~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~~-------v~Pk~AliS~G~~N~y 245 (293)
T COG2333 183 NSFLLTGDLEEKG------E-KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLEA-------VKPKVALISSGRNNRY 245 (293)
T ss_pred eeEEEecCCCchh------H-HHHHhhCCCccceEEEeccCCccccCcHHHHHh-------cCCcEEEEEeeccCCC
Confidence 4678888877752 1 2333332 1235566666666555444444443 4679999999995544
No 139
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=42.28 E-value=41 Score=27.00 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee-------e---cccCCCCCCCCCCCcc---ceeecccc
Q 030474 99 KIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI-------N---CFLGRPPKYPQPIGKQ---QLFYHGGC 165 (177)
Q Consensus 99 ~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i-------d---~~l~~~~~~l~~dG~~---~~~~~~~~ 165 (177)
.++++.+.+. ++.+|+++...-.++.|..+..+....+.+ | ...+..|.|++.-|.+ ++.-.|--
T Consensus 147 ~~i~~~I~~s--~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R 224 (243)
T PRK03692 147 QALFERIHAS--GAKIVTVAMGSPKQEIFMRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSR 224 (243)
T ss_pred HHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHH
Confidence 4588888887 567899887766677787766665554432 2 4456789999999986 55555544
No 140
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=42.26 E-value=1e+02 Score=23.29 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCcEEEEEeccccccccCCC---------CCCc--c----CCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 64 PPVATTIFFGANDAALFGRT---------SERQ--H----VPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~---------~~~~--~----~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
.-++|++++|++-+...... .+.+ . ....--..||++.++.+++++|+.-||-+-
T Consensus 24 ~~~iv~lCIGTDRstGDsLGPLVGt~L~~~~~~~~~VyGTL~~PVHA~NL~e~l~~I~~~~~~~~IIAID 93 (163)
T PF06866_consen 24 NREIVFLCIGTDRSTGDSLGPLVGTKLKEMGFPNFNVYGTLDEPVHALNLEETLNEIKKKHPNPFIIAID 93 (163)
T ss_pred CCCEEEEEECCCCCccccccchhhHHHHhcCCCCceEEECCCCCcchhhHHHHHHHHHHHCCCCeEEEEE
Confidence 56899999999655432110 0000 0 001112567888888888877776666654
No 141
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=42.07 E-value=95 Score=25.33 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=31.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHH---HHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVE---EYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~---~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++.+|+..-.. ....+ +-..-++++++.+.+..|+..+|+++-
T Consensus 65 ~dADiVIit~g~p~~~~--------~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 65 AGSDVVVITAGIPRKPG--------MSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CCCCEEEEecCCCCCcC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45799999998743211 11222 334456677888888888887777763
No 142
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=42.01 E-value=62 Score=23.01 Aligned_cols=65 Identities=17% Similarity=0.016 Sum_probs=37.2
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+..||-+.. |.-...=...+.+.+ ..++++.-.++-.+.-....+.+++... +.|+|++.-|+
T Consensus 3 ~ii~~G~El~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~-----~~DlvittGG~ 68 (133)
T cd00758 3 AIVTVSDELSQ-GQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR-----EADLVLTTGGT 68 (133)
T ss_pred EEEEeCccccC-CceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh-----cCCEEEECCCC
Confidence 47889999886 321111122344433 2356666666666665555566655543 37988887664
No 143
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=41.83 E-value=83 Score=27.00 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=31.4
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
..++|+|+|.- +. ....-.+...++++.+|++.|+++||+.++.+..
T Consensus 31 ~~~aD~v~int----ct-----------v~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~ 77 (414)
T TIGR01579 31 EDKADVYIINT----CT-----------VTAKADSKARRAIRRARRQNPTAKIIVTGCYAQS 77 (414)
T ss_pred cccCCEEEEec----cc-----------cchHHHHHHHHHHHHHHhhCCCcEEEEECCcccc
Confidence 35689999932 21 1122234566777888988888999999987643
No 144
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=41.79 E-value=54 Score=25.43 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=28.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+||+|++-++.-+. +=-+.++.++++.|.++|+++|...-
T Consensus 45 ~~pdvvl~Dl~mP~~-------------------~G~e~~~~l~~~~p~~~vvvlt~~~~ 85 (211)
T COG2197 45 LKPDVVLLDLSMPGM-------------------DGLEALKQLRARGPDIKVVVLTAHDD 85 (211)
T ss_pred cCCCEEEEcCCCCCC-------------------ChHHHHHHHHHHCCCCcEEEEeccCC
Confidence 789999995443331 11345677778899999999986543
No 145
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.65 E-value=1.3e+02 Score=21.66 Aligned_cols=73 Identities=10% Similarity=-0.103 Sum_probs=43.5
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..+++|+|.|+.- +.....+ ... .+++|+|.++. .. ......++++++.++++..
T Consensus 25 ~~GfeVidLG~~v-~~e~~v~---aa~----~~~adiVglS~------L~-----------t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 25 EAGFNVVNLGVLS-PQEEFID---AAI----ETDADAILVSS------LY-----------GHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred HCCCEEEECCCCC-CHHHHHH---HHH----HcCCCEEEEec------cc-----------cCCHHHHHHHHHHHHHCCC
Confidence 4689999999863 2222222 222 36889988842 11 1124566777888888754
Q ss_pred -CCEEEEEcCCCCChhHHH
Q 030474 111 -IMLVVLITPPPVDEDGRM 128 (177)
Q Consensus 111 -~~~vil~tp~p~~~~~~~ 128 (177)
+.+|++=+.+++.++.|.
T Consensus 80 ~~v~vivGG~~~i~~~d~~ 98 (128)
T cd02072 80 KDILLYVGGNLVVGKQDFE 98 (128)
T ss_pred CCCeEEEECCCCCChhhhH
Confidence 566666666655555553
No 146
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=41.57 E-value=1.5e+02 Score=22.41 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee-------e---cccCCCCCCCCCCCcc---ceeeccc
Q 030474 99 KIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI-------N---CFLGRPPKYPQPIGKQ---QLFYHGG 164 (177)
Q Consensus 99 ~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i-------d---~~l~~~~~~l~~dG~~---~~~~~~~ 164 (177)
.++++.+.+. ++.+++++...-.++.|..+.+.....+.+ | ...+..|.|++.-|.+ .+.-+|.
T Consensus 90 ~~i~~~I~~s--~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP~w~~~~gLEWlyRl~~eP~ 166 (177)
T TIGR00696 90 KAALAKIARS--GAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLYRLRMEPW 166 (177)
T ss_pred HHHHHHHHHc--CCCEEEEEcCCcHhHHHHHHhHHhCCCcEEEEeceeeeecccCcCcCCHHHHHhCchHHHHhhhCcH
Confidence 4588888888 467888887666666776655444332221 2 3456788999998876 4444544
No 147
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=41.28 E-value=1.3e+02 Score=21.42 Aligned_cols=44 Identities=7% Similarity=-0.073 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC----ChhHHHHHHHHhCC
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPV----DEDGRMEYAKYVNS 136 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~----~~~~~~~~~a~~~~ 136 (177)
......+..-++..++.. ..++|+.+..+. .+....+..+.+.+
T Consensus 17 ~~~~~R~~~a~~l~~~~~-~~~ii~sGg~~~~~~~~ea~~m~~~l~~~g 64 (150)
T cd06259 17 PILAERLDAAAELYRAGP-APKLIVSGGQGPGEGYSEAEAMARYLIELG 64 (150)
T ss_pred hHHHHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCCHHHHHHHHHHHcC
Confidence 778889999999888763 455666655433 35455555544444
No 148
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=41.11 E-value=66 Score=27.34 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh-----------hHH---HHHHHHhCCCceee
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE-----------DGR---MEYAKYVNSSPYIN 141 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~-----------~~~---~~~~a~~~~vp~id 141 (177)
+.-...++++++.+++. +++++++.|.-... +.| .+.+++..+++++|
T Consensus 248 ~~q~~F~e~~L~~ake~--~I~~vl~~P~V~~~~~~~~~~~~~~~~w~~~i~~l~~~~~~~~~d 309 (345)
T PF07611_consen 248 ETQFFFLEKFLKLAKEN--GIPVVLWWPKVSPPYEKLYKELKVYESWWPIIKKLAKEYGIPFLD 309 (345)
T ss_pred hhHHHHHHHHHHHHHHc--CCcEEEEEeccCHHHHHHHHhhchhhHHHHHHHHHHhcCCceEec
Confidence 34466789999999999 79999998763211 123 34567889999997
No 149
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=41.01 E-value=66 Score=28.61 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=41.3
Q ss_pred ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC
Q 030474 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (177)
Q Consensus 32 ~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~ 111 (177)
.++.++..+.+| ..+++.+.+ .+||+|+- |+..+. ... -++|+.+++..|.
T Consensus 26 ~g~eiVgtA~NG---~eAleli~e-------~~pDiviT-----DI~MP~-------------mdG-LdLI~~ike~~p~ 76 (475)
T COG4753 26 LGIEVVGTAANG---KEALELIQE-------TQPDIVIT-----DINMPG-------------MDG-LDLIKAIKEQSPD 76 (475)
T ss_pred cCCeEEEecccH---HHHHHHHHh-------cCCCEEEE-----ecCCCC-------------CcH-HHHHHHHHHhCCC
Confidence 367777777777 344444332 67899998 877653 112 2578999999999
Q ss_pred CEEEEEcC
Q 030474 112 MLVVLITP 119 (177)
Q Consensus 112 ~~vil~tp 119 (177)
+++|++|-
T Consensus 77 ~~~IILSG 84 (475)
T COG4753 77 TEFIILSG 84 (475)
T ss_pred ceEEEEec
Confidence 99999884
No 150
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.58 E-value=1e+02 Score=25.52 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccC--CHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHV--PVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~--~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|..-- .+ +. ..+.+..| +++++..+++..|++.+|+++-|
T Consensus 67 ~~aDivvitaG~~~k--pg------~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 67 ADADIIVITAGPSID--PG------NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCEEEECCCCCCC--CC------CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 467999998886311 11 11 14444444 67888888888998877777643
No 151
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=40.52 E-value=1.8e+02 Score=22.78 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=25.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|++++++-..|.. +.+.. ...+...++...|++++||++
T Consensus 71 ~~~d~illvfdis~~~-----------Sf~~i---~~~w~~~~~~~~~~~piiLVg 112 (222)
T cd04173 71 PDSDAVLICFDISRPE-----------TLDSV---LKKWQGETQEFCPNAKVVLVG 112 (222)
T ss_pred cCCCEEEEEEECCCHH-----------HHHHH---HHHHHHHHHhhCCCCCEEEEE
Confidence 4678999988765532 22222 233444556666788888886
No 152
>PRK03673 hypothetical protein; Provisional
Probab=40.47 E-value=51 Score=28.53 Aligned_cols=68 Identities=18% Similarity=0.079 Sum_probs=44.0
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+-.|+.+||-+.. |.-.+.=...|++.+ ..++++....+-++......+.++... .+.|+|++.-|.
T Consensus 2 ~~v~Iis~GdEll~-G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~-----~~~DlVI~tGGl 70 (396)
T PRK03673 2 LRVEMLSTGDEVLH-GQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERS-----QHADVLIVNGGL 70 (396)
T ss_pred CEEEEEEecccCCC-CeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHh-----ccCCEEEEcCCC
Confidence 45579999999986 321111122344444 346777777777887777776666543 467999998875
No 153
>PRK05442 malate dehydrogenase; Provisional
Probab=40.39 E-value=1.1e+02 Score=25.71 Aligned_cols=51 Identities=6% Similarity=-0.022 Sum_probs=32.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhC-CCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLS-PIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~-p~~~vil~tp~p~ 122 (177)
...|+|+|..|...-.. ....+.+. +-++++++.+.+.. |++.+|++| .|+
T Consensus 79 ~daDiVVitaG~~~k~g--------~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPv 133 (326)
T PRK05442 79 KDADVALLVGARPRGPG--------MERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG-NPA 133 (326)
T ss_pred CCCCEEEEeCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-Cch
Confidence 56899999998743211 12333333 44777888888855 688888887 444
No 154
>PRK01215 competence damage-inducible protein A; Provisional
Probab=39.81 E-value=56 Score=26.55 Aligned_cols=65 Identities=8% Similarity=-0.116 Sum_probs=39.1
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||-+.. |.-.+.=...+++.+ ..++++....+-++......+.+.+.. ...|+|++.-|+
T Consensus 7 ~Ii~~GdEll~-G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~-----~~~DlVIttGG~ 72 (264)
T PRK01215 7 WIITIGNELLI-GRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAI-----DRADVVVSTGGL 72 (264)
T ss_pred EEEEEChhccC-CeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHh-----cCCCEEEEeCCC
Confidence 47789999986 321111112344444 346777766666776666666665543 345999998664
No 155
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=39.75 E-value=83 Score=21.98 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCC-h-----hHHHHHHHHhCCCcee
Q 030474 99 KIMVQHLKRLSPIMLVVLITPPPVD-E-----DGRMEYAKYVNSSPYI 140 (177)
Q Consensus 99 ~~ii~~~r~~~p~~~vil~tp~p~~-~-----~~~~~~~a~~~~vp~i 140 (177)
.++++.++.. .+..|+-+|.|.. . ....++.+-++++|++
T Consensus 60 ~~i~~~i~~g--~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 60 QQIGALIAEG--EIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLA 105 (115)
T ss_pred hHHHHHHHcC--ceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEE
Confidence 3466777765 6788888887622 2 2334677889999998
No 156
>PLN00106 malate dehydrogenase
Probab=39.46 E-value=84 Score=26.33 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
...|+||+..|...... ....+.. ...++++++.+++..|++.|++++ .|.+
T Consensus 85 ~~aDiVVitAG~~~~~g--------~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvS-NPvD 139 (323)
T PLN00106 85 KGADLVIIPAGVPRKPG--------MTRDDLFNINAGIVKTLCEAVAKHCPNALVNIIS-NPVN 139 (323)
T ss_pred CCCCEEEEeCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC-CCcc
Confidence 56799999999743211 1122333 344677888888888887666555 4444
No 157
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=39.27 E-value=1.3e+02 Score=23.31 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=37.7
Q ss_pred hhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 030474 47 RWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 47 ~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~ 108 (177)
...++.++++. ..|.+..+++|.+|.....+... ..+..++..-..+++..+|+.
T Consensus 129 ~~gv~~~~eI~-----a~~~v~~l~~G~~Dls~~lG~~~--~~~~~~~~~a~~~v~~aa~a~ 183 (221)
T PF03328_consen 129 PEGVENLEEIA-----AVPGVDGLFFGPADLSASLGIPG--QPDHPEVLEARSKVVLAARAA 183 (221)
T ss_dssp HHHHHTHHHHH-----TSTTEEEEEE-HHHHHHHTTTTT--STTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCHHhhc-----ccCCeeEEEeCcHHHHhhhccCC--CCcchHHHHHHHHHHHHHHHc
Confidence 44555555554 34588889999999987643221 124567889999999999987
No 158
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=39.12 E-value=80 Score=25.21 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=31.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|+|++..|.-..... + ......+-..-++++++.+++..|++.+|+.+
T Consensus 69 ~~aDiVv~t~~~~~~~g~----~-r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 69 KDADVVIITAGVGRKPGM----G-RLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCCEEEECCCCCCCcCC----C-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 457899998875322111 0 01123333455777888888888999888886
No 159
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=39.12 E-value=99 Score=27.38 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=30.9
Q ss_pred EEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 69 TIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 69 vi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
-|++|..|.... ...++...-..+++..+++. +..+++.|
T Consensus 238 gi~iG~gDL~~~--------lg~~~l~~~~~~ii~aaraa--g~pvi~at 277 (473)
T TIGR01064 238 GIMVARGDLGVE--------IPAEEVPIAQKKMIRKCNRA--GKPVITAT 277 (473)
T ss_pred cEEEchHHHHhh--------cCcHHHHHHHHHHHHHHHHc--CCCEEEEC
Confidence 788899999875 33577888889999999988 45677655
No 160
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=38.83 E-value=95 Score=25.65 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=31.4
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHH---HHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEE---YGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~---~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++..|+-.-.. ....+. -.+.++++++.+.+..|+..+|+++-
T Consensus 71 ~~aDiViitag~p~~~~--------~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 71 AGSDIVIITAGVPRKEG--------MSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred CCCCEEEEecCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56799999999743210 011222 23556777777888888888888773
No 161
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=38.80 E-value=81 Score=25.91 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 49 ~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
..+++.+... ...||++++.+|+- .+ ...-.-|.+.++++-...... ++-.|-++..|.
T Consensus 121 Ik~~I~~~a~---~~~~Dv~iiEiGGT----VG------DIEs~pFlEAirQl~~~~G~~--n~~~IHvtlVP~ 179 (276)
T PF06418_consen 121 IKERIRRVAK---KPEPDVVIIEIGGT----VG------DIESLPFLEAIRQLRNEVGRE--NVCFIHVTLVPY 179 (276)
T ss_dssp HHHHHHHHHC---CCT-SEEEEEEESE----TT------SCCCHHHHHHHHHHHHHH-TT--CEEEEEEEE--E
T ss_pred HHHHHHHhcC---CCCCCEEEEecCCc----cc------ccccccHHHHHHHHHHHhCcC--cEEEEEEeeeee
Confidence 3444444433 35799999999861 11 134445788888887777655 455566666553
No 162
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=38.76 E-value=2.1e+02 Score=24.97 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=53.3
Q ss_pred EEEEeccccccccCCCCCCccCCHHHHH--HHHHHHHHHHHHhCCCCEEEEEcCCCC--ChhHHHHHHHH--hCCCceee
Q 030474 68 TTIFFGANDAALFGRTSERQHVPVEEYG--DNLKIMVQHLKRLSPIMLVVLITPPPV--DEDGRMEYAKY--VNSSPYIN 141 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~~~~~~~~~~~~~~--~nl~~ii~~~r~~~p~~~vil~tp~p~--~~~~~~~~~a~--~~~vp~id 141 (177)
|++++| |..+++- ...-.+..++. -.+.+++++++++ +++|++=+|-.+ ++-..+-.++. -+++||.-
T Consensus 217 VtlSLG--DglRPG~--i~DA~D~aQi~El~~lgeL~~rA~e~--gVQvMVEGPGHvPl~~I~~nv~lqK~lc~~APfYv 290 (423)
T TIGR00190 217 VTLSLG--DGLRPGC--IADATDRAQISELITLGELVERAREA--DVQCMVEGPGHVPLDQIEANVRLQKELCDEAPFYV 290 (423)
T ss_pred eeeecc--CCcCCCc--cccCCcHHHHHHHHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCeee
Confidence 678888 7776542 11123444443 3577888999988 799999988754 43333322222 24688862
Q ss_pred -cccCCC--CCC---CCCCCccceeecccchhhhh
Q 030474 142 -CFLGRP--PKY---PQPIGKQQLFYHGGCSICYF 170 (177)
Q Consensus 142 -~~l~~~--~~~---l~~dG~~~~~~~~~~~~~~~ 170 (177)
-+|..+ +-| -++-|-.---+||.+-+||.
T Consensus 291 LGPLvTDiApGYDHItsAIGgAiAa~~GAdfLCYV 325 (423)
T TIGR00190 291 LGPLVTDIAPGYDHITSAIGAAIAGWAGADFLCYV 325 (423)
T ss_pred cCCcccccCCCchHHHHHHHHHHHHHcCCCeEEec
Confidence 233211 222 22222223346777777773
No 163
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=38.63 E-value=63 Score=27.04 Aligned_cols=65 Identities=9% Similarity=-0.055 Sum_probs=40.0
Q ss_pred EEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 5 IVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 5 I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+.+||++..| .-...=...|.+.+ ..++.+...++-.+......+.+++... ...|+|+..-|+
T Consensus 160 Iltvsde~~~G-~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~----~~~DlIITTGGt 225 (312)
T PRK03604 160 VLVLSDSIAAG-TKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIA----EGYALIITTGGT 225 (312)
T ss_pred EEEECCcCCCC-cEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhh----CCCCEEEECCCC
Confidence 88999999863 22111222355444 3467777777766666656666655432 457988888664
No 164
>PRK13947 shikimate kinase; Provisional
Probab=38.52 E-value=59 Score=23.68 Aligned_cols=29 Identities=17% Similarity=0.009 Sum_probs=26.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.|+++++|........+.+|+..+.+|+|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999999996
No 165
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=38.25 E-value=51 Score=30.01 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=35.8
Q ss_pred EEEEEeccccccccC----CCC----CCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 67 ATTIFFGANDAALFG----RTS----ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~~----~~~----~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
+=++++|+||....- ..+ ......-..+..-++.+++.+++. +.++-+|+=..-+
T Consensus 446 vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~--g~~v~vCGe~A~d 508 (575)
T PRK11177 446 VDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAE--GKWTGMCGELAGD 508 (575)
T ss_pred CCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhc--CCeEEEeCCCCCC
Confidence 346788999988621 110 111223456788999999999988 6778888844333
No 166
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.21 E-value=68 Score=27.23 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=28.7
Q ss_pred hhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCE
Q 030474 47 RWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (177)
Q Consensus 47 ~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~ 113 (177)
..-.+|++.++.. ...+|+|+| |..+. ..++..++|+.+|+.+|+..
T Consensus 106 ~~d~er~~~L~~a--~~~~d~ivi-----D~AhG-------------hs~~~i~~ik~ir~~~p~~~ 152 (343)
T TIGR01305 106 DNDLEKMTSILEA--VPQLKFICL-----DVANG-------------YSEHFVEFVKLVREAFPEHT 152 (343)
T ss_pred HHHHHHHHHHHhc--CCCCCEEEE-----ECCCC-------------cHHHHHHHHHHHHhhCCCCe
Confidence 3445666666541 125788887 66553 25566777788888877543
No 167
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=38.15 E-value=42 Score=28.32 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHH-HHHHHhCCCcee
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRM-EYAKYVNSSPYI 140 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~-~~~a~~~~vp~i 140 (177)
+.+.|.+.+++.+..+.....+.+|+++||-|.++.... .+.|+.-+++.+
T Consensus 121 ~l~~f~~~lr~~l~~~~~~~~~p~ivlLtpG~~n~~yfEha~LA~~lG~~Lv 172 (330)
T PF04174_consen 121 RLAPFFQMLREALRAAAPRGDDPRIVLLTPGPYNEAYFEHAFLARYLGFPLV 172 (330)
T ss_dssp --TTHHHHHHHHHHHTS-TT-S--EEEE---SSSTTHHHHHHHHHHHT-EEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCcHHHHHHHHHHhhCCcEEE
Confidence 456677777777776666654578999999998886432 344555555555
No 168
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=38.11 E-value=1.2e+02 Score=25.44 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHh-CCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRL-SPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~-~p~~~vil~tp~p~ 122 (177)
...|+||+..|...-.. ....+....| ++++++.+.+. .|++.+|+++ -|+
T Consensus 74 ~~aDiVVitAG~~~~~~--------~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs-NPv 128 (324)
T TIGR01758 74 TDVDVAILVGAFPRKEG--------MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG-NPA 128 (324)
T ss_pred CCCCEEEEcCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-CcH
Confidence 56899999999753211 1223333333 77778888888 4888888887 443
No 169
>PTZ00346 histone deacetylase; Provisional
Probab=38.04 E-value=47 Score=29.13 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+||+|+++.|. |....+. -+....+.+.|.. +++.+++. +.+++++.
T Consensus 266 ~F~PdlIvvsaG~-Da~~~Dp-Lg~l~LT~~g~~~----~~~~l~~~--~~plv~vl 314 (429)
T PTZ00346 266 RYSPDAIVLQCGA-DSLAGDR-LGLLNLSSFGHGQ----CVQAVRDL--GIPMLALG 314 (429)
T ss_pred hcCCCEEEEECCc-cCCCCCC-CCCceeCHHHHHH----HHHHHHhc--CCCEEEEe
Confidence 4799999999997 6654431 1233456666555 55566655 45666654
No 170
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.92 E-value=1.2e+02 Score=25.26 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHH---HHHHHHHHHhC-CCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNL---KIMVQHLKRLS-PIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl---~~ii~~~r~~~-p~~~vil~t 118 (177)
...|+|++..|.-.... +...+.+..|. ++++..+++.. |++.+|+++
T Consensus 77 ~~aDiVI~tAG~~~~~~--------~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 77 KDVDVAILVGAMPRKEG--------MERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred CCCCEEEEeCCcCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 46899999999754321 12355555554 56777888874 788888877
No 171
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=37.83 E-value=88 Score=27.17 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
..++|+++| |=|..-. ....+.++.+.. +.++++.+|+++|++.+..+..
T Consensus 35 ~~~aDv~ii----NTC~v~~-------~a~~k~~~~i~~-~~~~k~~~~~~~ivv~GC~a~~ 84 (438)
T TIGR01574 35 AKEADVLLI----NTCSVRE-------KAEHKVFGELGG-FKKLKKKNPDLIIGVCGCMASH 84 (438)
T ss_pred cccCCEEEE----eccCeec-------hHHHHHHHHHHH-HHHHHhhCCCcEEEEeCccccc
Confidence 356899999 4444311 123444444444 4667777888889998876543
No 172
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=37.56 E-value=1e+02 Score=21.82 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=26.2
Q ss_pred EEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Q 030474 67 ATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~ 117 (177)
+|++.+|+=|. +..+.++.+.+.+++++|+..|-..
T Consensus 3 illv~fGS~~~---------------~~~~~~~~i~~~l~~~~p~~~V~~a 38 (127)
T cd03412 3 ILLVSFGTSYP---------------TAEKTIDAIEDKVRAAFPDYEVRWA 38 (127)
T ss_pred EEEEeCCCCCH---------------HHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 56777776332 4567888888889999888777654
No 173
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes. In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.
Probab=37.55 E-value=1e+02 Score=24.41 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=34.9
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCC
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPVD 123 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~p~~ 123 (177)
...-|+..=|-+|. .. . .|.+++.++|+.+|+.. |+.+++++..++..
T Consensus 143 ~i~gvlW~QGEsD~-~~---------~--~Y~~~l~~li~~~R~~~~~~~lPf~~~ql~~~~ 192 (255)
T PF03629_consen 143 GIKGVLWYQGESDA-NA---------E--AYRELLKALIEDWRADWGDPDLPFVIGQLSPYN 192 (255)
T ss_dssp EEEEEEEE--GGGS-SC---------T--CHHHHHHHHHHHHHHHTT-TTS-EEEEE-SCCC
T ss_pred ceEEEEEeCCCCCC-CH---------H--HHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcc
Confidence 34567777788887 32 1 89999999999999987 78899998877653
No 174
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=37.28 E-value=67 Score=18.67 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
++..+++.|+.++++.+.+. + +|++..
T Consensus 2 v~~te~r~~~~~~l~~v~~~--~-pv~It~ 28 (52)
T TIGR01552 2 VSLSEAKNKLGELLKRVRDG--E-PVTITK 28 (52)
T ss_pred cCHHHHHHHHHHHHHHHHCC--C-CEEEEE
Confidence 57889999999999999865 3 455543
No 175
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.14 E-value=19 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEc
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+.++++.+|++ ++++|.++
T Consensus 61 ~~~~~~~~~a~~~--g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKEL--GIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHc--CCeEEEEe
Confidence 4466788888888 68898887
No 176
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=37.11 E-value=98 Score=24.18 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|++++++-.+ +++.+.+.-.+.+-.++...|++++||++
T Consensus 75 ~~tdvfl~cfsv~--------------~p~S~~nv~~kW~pEi~~~cp~vpiiLVG 116 (198)
T KOG0393|consen 75 PQTDVFLLCFSVV--------------SPESFENVKSKWIPEIKHHCPNVPIILVG 116 (198)
T ss_pred CCCCEEEEEEEcC--------------ChhhHHHHHhhhhHHHHhhCCCCCEEEEe
Confidence 4568888876533 45556666667788899999999999998
No 177
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=1.4e+02 Score=23.57 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCC-CCC-----hhHHHHHHHHhCCCceee
Q 030474 90 PVEEYGDNLKIMVQHLKRLSP-IMLVVLITPP-PVD-----EDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p-~~~vil~tp~-p~~-----~~~~~~~~a~~~~vp~id 141 (177)
.-++..+|++..++.+.++.+ .+.++|++-= -+. ...+.+..|++++++|..
T Consensus 95 tne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~E 153 (207)
T KOG0078|consen 95 TNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFE 153 (207)
T ss_pred cchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEE
Confidence 445667888888888888765 6777777732 111 124567889999999984
No 178
>PTZ00063 histone deacetylase; Provisional
Probab=36.81 E-value=51 Score=28.94 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
..+||+|+++.|. |....+. -+....+.+.+.+ +++.+++. +.+++++.-
T Consensus 248 ~f~Pd~IvvqaG~-D~~~~Dp-Lg~l~Lt~~g~~~----~~~~~~~~--~~pil~l~g 297 (436)
T PTZ00063 248 VYRPGAIVLQCGA-DSLTGDR-LGRFNLTIKGHAA----CVEFVRSL--NIPLLVLGG 297 (436)
T ss_pred HhCCCEEEEECCc-cccCCCC-CCCcccCHHHHHH----HHHHHHhc--CCCEEEEeC
Confidence 4799999999997 6554331 1233456666554 55666665 456666653
No 179
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=36.74 E-value=1.1e+02 Score=27.80 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=36.8
Q ss_pred EEEEEecccccccc----CCCC----CCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh
Q 030474 67 ATTIFFGANDAALF----GRTS----ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~----~~~~----~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~ 125 (177)
+=++++|+||.... .+.+ ......-..+..-++.+++.++++ +.++-+|+-...+..
T Consensus 445 vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~--g~~v~vCGe~a~~p~ 509 (565)
T TIGR01417 445 VDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAE--GIWVGMCGEMAGDER 509 (565)
T ss_pred CCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHc--CCeEEEeCCcCCCHH
Confidence 33678899999752 1111 011123356788999999999988 677888776555543
No 180
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=36.57 E-value=93 Score=27.69 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.+++. ++++|+..|.........+.++++.+++.+
T Consensus 406 ~~~L~~Li~~IK~~--~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~ 449 (479)
T TIGR03772 406 LADRRRLTRTIENL--KVPAVFLEPNLAARSTTLNEIADELGVRVC 449 (479)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCCCchHHHHHHHHHcCCcEE
Confidence 67788999999998 799999998765554556788888898875
No 181
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=36.52 E-value=31 Score=24.98 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=36.6
Q ss_pred HHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 49 ~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
..+.+.+++. .++++.+||-+-.|--... .+..+..++..+.++++.|+.+|.++.=
T Consensus 39 ~~~~l~~li~---~~~i~~iVvGlP~~~~G~~-----------~~~~~~v~~f~~~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 39 DIEELKKLIE---EYQIDGIVVGLPLNMDGSE-----------SEQARRVRKFAEELKKRFPGIPVILVDE 95 (135)
T ss_dssp CHHHHHHHHH---HCCECEEEEEEEBBCTSSC------------CCHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred HHHHHHHHHH---HhCCCEEEEeCCcccCCCc-----------cHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 3445555554 4778999998887664322 2235556667777777767899999863
No 182
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=36.46 E-value=48 Score=27.65 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=37.8
Q ss_pred CCCcEEEEEeccccc------cccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDA------ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~------~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
..|...+|.||+ |. +... +.+...+.-+|+.+...+..++|+..|+++.|.-+
T Consensus 31 ~~~~~~vVfF~G-DvQdf~~~M~~~------~d~~~~~~wslE~vA~iL~~kFp~shIwVIrpSr~ 89 (303)
T PF10561_consen 31 EVPSSNVVFFPG-DVQDFEENMEQH------PDNKQYRKWSLENVAWILSSKFPNSHIWVIRPSRM 89 (303)
T ss_pred CCCCceEEECCC-chhhHHHHhhcC------CcccceeeCCHHHHHHHHHHhCCCccEEEEECccc
Confidence 446666677765 65 2221 13445667789999999999999999999988644
No 183
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=36.39 E-value=1.2e+02 Score=22.63 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.5
Q ss_pred CCceEEEEecccC
Q 030474 1 MRPQIVLFGDSIT 13 (177)
Q Consensus 1 ~~~~I~~~GDSit 13 (177)
|.++|+++.|.-.
T Consensus 1 m~~~Ilivdd~~~ 13 (229)
T PRK10161 1 MARRILVVEDEAP 13 (229)
T ss_pred CCCeEEEEcCCHH
Confidence 7889999988744
No 184
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.34 E-value=1.8e+02 Score=21.67 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee-------e---cccCCCCCCCCCCCcc
Q 030474 101 MVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI-------N---CFLGRPPKYPQPIGKQ 157 (177)
Q Consensus 101 ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i-------d---~~l~~~~~~l~~dG~~ 157 (177)
+++.+.+. ++.+|+++...-.++.|..+..+....+.+ | ...+..|.|++.-|.+
T Consensus 91 i~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~vG~~~d~~aG~~~raP~w~~~~glE 155 (171)
T cd06533 91 IIERINAS--GADILFVGLGAPKQELWIARHKDRLPVPVAIGVGGSFDFLAGTVKRAPKWMQKLGLE 155 (171)
T ss_pred HHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEeceeeEeccCCcccCcHHHHHhCch
Confidence 88888888 456888887766666777666655443322 2 3345678888887765
No 185
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=36.20 E-value=89 Score=28.64 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHh---------CCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 91 VEEYGDNLKIMVQHLKRL---------SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~---------~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.++-.+.+.++|+-++.- .| .-|+|++||........+.+|-+.+|||..
T Consensus 155 ~dEakeel~EiVdfLk~p~ky~~lGakiP-kGvlLvGpPGTGKTLLAkAvAgEA~VPFf~ 213 (596)
T COG0465 155 VDEAKEELSELVDFLKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 213 (596)
T ss_pred cHHHHHHHHHHHHHHhCchhhHhcccccc-cceeEecCCCCCcHHHHHHHhcccCCCcee
Confidence 356788899999988832 23 337999999988888888888888888873
No 186
>PRK03839 putative kinase; Provisional
Probab=36.20 E-value=65 Score=23.85 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=26.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|+++++|-..+....+.+++..+++++|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id 30 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVD 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58899999999999999999999999985
No 187
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=36.17 E-value=1.5e+02 Score=24.16 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
.+.+.++++.+|++ +++||.+|..+-+
T Consensus 102 t~~~~~~~~~ak~~--g~~vI~iT~~~~s 128 (321)
T PRK11543 102 AKELDLIIPRLEDK--SIALLAMTGKPTS 128 (321)
T ss_pred cHHHHHHHHHHHHc--CCeEEEEECCCCC
Confidence 45677888999998 7999999976543
No 188
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=36.17 E-value=1e+02 Score=24.69 Aligned_cols=68 Identities=24% Similarity=0.242 Sum_probs=42.1
Q ss_pred hHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHH
Q 030474 22 WGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKI 100 (177)
Q Consensus 22 w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ 100 (177)
-.-.|++.| ..+-+|+-.|.+- +++++... ..|++.....-.-| ++..++
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e-------~~L~e~~~----~~p~~~t~v~Dv~d------------------~~~~~~ 67 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNE-------ERLAEAKA----ENPEIHTEVCDVAD------------------RDSRRE 67 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcH-------HHHHHHHh----cCcchheeeecccc------------------hhhHHH
Confidence 334566655 4467777766542 23444332 45666655433222 456788
Q ss_pred HHHHHHHhCCCCEEEEEc
Q 030474 101 MVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 101 ii~~~r~~~p~~~vil~t 118 (177)
+++.+++++|+..|++-.
T Consensus 68 lvewLkk~~P~lNvliNN 85 (245)
T COG3967 68 LVEWLKKEYPNLNVLINN 85 (245)
T ss_pred HHHHHHhhCCchheeeec
Confidence 999999999999988743
No 189
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=35.53 E-value=92 Score=23.35 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.0
Q ss_pred EEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 67 ATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
.|+|++|+|=- +-.+|+++.++.+++. |+.+++.+++
T Consensus 3 ~v~i~lGSN~g---------------~~~~~l~~A~~~L~~~-~~~~i~~~S~ 39 (159)
T PRK10239 3 VAYIAIGSNLA---------------SPLEQVNAALKALGDI-PESRILAVSS 39 (159)
T ss_pred EEEEEEeCchh---------------hHHHHHHHHHHHHhcC-CCCeEEEECC
Confidence 58999999931 1257788888888765 5777777764
No 190
>PRK12354 carbamate kinase; Reviewed
Probab=35.12 E-value=1.3e+02 Score=25.18 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=28.0
Q ss_pred EEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Q 030474 67 ATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~ 117 (177)
.++|.+|+|-....+ ...+.+.-.+|++...+.+..-..+-+||++
T Consensus 2 ~iVialGGnal~~~~-----~~~~~~~~~~~v~~~a~~ia~~~~~~~vvi~ 47 (307)
T PRK12354 2 RIVVALGGNALLRRG-----EPLTAENQRANIRIAAEQIAKIAREHELVIV 47 (307)
T ss_pred eEEEEeccHHhCCCC-----CCcCHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 588999999987643 1234554455666666655554434456654
No 191
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=34.75 E-value=1.5e+02 Score=20.16 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=29.5
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCCCCCh
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDE 124 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~-p~~~vil~tp~p~~~ 124 (177)
....|+++| |=+... +.-.+.+...|.++++.. |+.+|++++-.|-..
T Consensus 34 ~e~AD~iii----NTC~V~-----------~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~ 82 (98)
T PF00919_consen 34 PEEADVIII----NTCTVR-----------ESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRY 82 (98)
T ss_pred cccCCEEEE----EcCCCC-----------cHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccC
Confidence 467899999 444421 122344445555555555 889999998766443
No 192
>PRK13949 shikimate kinase; Provisional
Probab=34.60 E-value=73 Score=23.70 Aligned_cols=29 Identities=7% Similarity=-0.053 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|++++++........+.+++..+.+++|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 58999999999998888999989999985
No 193
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.31 E-value=1.3e+02 Score=22.42 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCChhH
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDEDG 126 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~ 126 (177)
+.++++.+.+++++|+.+|+-.-+++++++.
T Consensus 59 ~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~ 89 (172)
T PF03808_consen 59 EVLEKAAANLRRRYPGLRIVGYHHGYFDEEE 89 (172)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCChhh
Confidence 3456778889999999999988888886543
No 194
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.27 E-value=20 Score=28.97 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 98 LKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
=..+++.+++-.|...+-++.-.+..+
T Consensus 269 kd~a~E~~~a~spE~e~~~lnn~~~ge 295 (315)
T COG4030 269 KDRAFEVLSAVSPETEIYILNNSDFGE 295 (315)
T ss_pred HHHHHHHHHhhCcccceecccCCcHHH
Confidence 455666667666777676666444443
No 195
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=34.25 E-value=61 Score=29.81 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHHHHHH-H-HHHhCCCCEEEEEcCCCCCh----------------------hHHHHHHHHhCCCcee-ecccC
Q 030474 93 EYGDNLKIMVQ-H-LKRLSPIMLVVLITPPPVDE----------------------DGRMEYAKYVNSSPYI-NCFLG 145 (177)
Q Consensus 93 ~~~~nl~~ii~-~-~r~~~p~~~vil~tp~p~~~----------------------~~~~~~~a~~~~vp~i-d~~l~ 145 (177)
+.++-.+++.. + +.+.-|++.||++.|+...- ..+-+.+|++++||.+ |.+|.
T Consensus 534 RRRqlqREmar~rRMm~~VpkADVVITNPTHyAVALKYdp~~~~APiVVAKG~D~lAlrIReiAeE~gVPIVENpPLA 611 (646)
T PRK12773 534 RRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQA 611 (646)
T ss_pred HHHHHHHHHHhhcchhhcCCCCcEEEECCCceEEEEEECCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCcEEECHHHH
Confidence 34444555552 3 45567899999999974310 1234567899999999 54443
No 196
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=34.05 E-value=85 Score=22.23 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=40.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCCC-CCh-----hHHHHHHHHhC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP-IMLVVLITPPP-VDE-----DGRMEYAKYVN 135 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p-~~~vil~tp~p-~~~-----~~~~~~~a~~~ 135 (177)
.+.|.++|++-.||-. ..++++.+++.++...+ ++++++++.-. ..+ ....+..+.+.
T Consensus 70 ~~~~~~ii~fd~~~~~---------------S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~ 134 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEE---------------SFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKEL 134 (162)
T ss_dssp TTESEEEEEEETTBHH---------------HHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHT
T ss_pred cccccccccccccccc---------------cccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHh
Confidence 4678999998776642 34455566666666655 57888886321 111 12245566777
Q ss_pred CCceeec
Q 030474 136 SSPYINC 142 (177)
Q Consensus 136 ~vp~id~ 142 (177)
+++|+..
T Consensus 135 ~~~~~e~ 141 (162)
T PF00071_consen 135 GVPYFEV 141 (162)
T ss_dssp TSEEEEE
T ss_pred CCEEEEE
Confidence 7999864
No 197
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=34.02 E-value=1.2e+02 Score=26.30 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=53.9
Q ss_pred EEEEeccccccccCCCCCCccCCHHHHHH--HHHHHHHHHHHhCCCCEEEEEcCCCC--ChhHHHHHHHH--hCCCceee
Q 030474 68 TTIFFGANDAALFGRTSERQHVPVEEYGD--NLKIMVQHLKRLSPIMLVVLITPPPV--DEDGRMEYAKY--VNSSPYIN 141 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~--nl~~ii~~~r~~~p~~~vil~tp~p~--~~~~~~~~~a~--~~~vp~id 141 (177)
|++++| |..+++- -..-.+..++.+ -+.+++++++++ ++++++=+|-.+ ++-.++-.... -.++||.-
T Consensus 218 vtlSLG--DglRPG~--i~DA~D~aQ~~EL~tlgeL~krA~~~--gVQvmvEGPGHvpl~~I~~nv~l~k~~c~~aPfYv 291 (432)
T COG0422 218 VTLSLG--DGLRPGC--IADANDEAQFAELITLGELTKRAWEA--GVQVMVEGPGHVPLNEIEANVKLQKELCDGAPFYV 291 (432)
T ss_pred eeeecc--CCCCCCc--ccCCccHHHHHHHHHHHHHHHHHHHc--CCEEEEECCCcCcHHHHHHHHHHHHHhcCCCCeee
Confidence 677888 7666541 111234555543 467888899988 799999888744 44333322222 35688862
Q ss_pred -cccCC--CCCC---CCCCCccceeecccchhhhh
Q 030474 142 -CFLGR--PPKY---PQPIGKQQLFYHGGCSICYF 170 (177)
Q Consensus 142 -~~l~~--~~~~---l~~dG~~~~~~~~~~~~~~~ 170 (177)
-+|.. .|-| -++-|-...-+.|.+-+||.
T Consensus 292 LGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYV 326 (432)
T COG0422 292 LGPLVTDIAPGYDHITSAIGAAMAAWAGADMLCYV 326 (432)
T ss_pred eCCcccccCCCchHHHHHHHHHHHHhccCceEEec
Confidence 23321 1222 33334444456666667764
No 198
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.96 E-value=35 Score=23.55 Aligned_cols=27 Identities=15% Similarity=-0.087 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..+.++++.++++ ++++|.+|..+-.+
T Consensus 60 ~e~~~~~~~a~~~--g~~vi~iT~~~~s~ 86 (126)
T cd05008 60 ADTLAALRLAKEK--GAKTVAITNVVGST 86 (126)
T ss_pred HHHHHHHHHHHHc--CCeEEEEECCCCCh
Confidence 3467788999988 68999999776544
No 199
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=33.67 E-value=75 Score=30.53 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
..+.+-++..++..|+..|+.+|=+|+=..
T Consensus 807 ~aV~~Li~~~v~~~r~~~~~~~vgICGE~g 836 (879)
T PRK09279 807 EGVGELVEIAVERGRATRPDLKLGICGEHG 836 (879)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 346666777777777766789999987443
No 200
>PTZ00088 adenylate kinase 1; Provisional
Probab=33.67 E-value=72 Score=25.22 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 112 MLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 112 ~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.+|++++||........+.+++..++++|+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 569999999999998899999999999994
No 201
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=33.52 E-value=1.8e+02 Score=24.41 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=26.1
Q ss_pred chhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC
Q 030474 45 NTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (177)
Q Consensus 45 ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~ 111 (177)
++....+|+..++.. ...+|+|++ |..+.. ..++.++|+.+|+..|.
T Consensus 91 ~t~e~~~r~~~lv~a--~~~~d~i~~-----D~ahg~-------------s~~~~~~i~~i~~~~p~ 137 (321)
T TIGR01306 91 VKACEYEFVTQLAEE--ALTPEYITI-----DIAHGH-------------SNSVINMIKHIKTHLPD 137 (321)
T ss_pred CCHHHHHHHHHHHhc--CCCCCEEEE-----eCccCc-------------hHHHHHHHHHHHHhCCC
Confidence 445556677766651 123688888 655432 34445555666666543
No 202
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=33.40 E-value=1.1e+02 Score=27.02 Aligned_cols=49 Identities=6% Similarity=-0.081 Sum_probs=31.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHH-hCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKR-LSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~-~~p~~~vil~tp 119 (177)
...|+|||..|.-.-- + +...+.+.. -++++...+.+ ..|+++||+++-
T Consensus 175 kdaDiVVitAG~prkp------G--~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 175 QDAEWALLIGAKPRGP------G--MERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred CcCCEEEECCCCCCCC------C--CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 4578888887763211 1 123333433 47778888888 588999988883
No 203
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.10 E-value=90 Score=23.16 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 94 ~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
.-..+.++++.++++ +++||.+|..+-.+
T Consensus 84 ~t~~~i~~~~~ak~~--g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 84 ETESLVTVAKKAKEI--GATVAAITTNPEST 112 (179)
T ss_pred CcHHHHHHHHHHHHC--CCeEEEEECCCCCc
Confidence 355677788889988 79999999776654
No 204
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=32.86 E-value=74 Score=24.27 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 111 IMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 111 ~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+.+|+|++++-.......+.+|+.-+.+|+|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D 32 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFID 32 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCccc
Confidence 3569999999999999999999999999996
No 205
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=32.72 E-value=2e+02 Score=24.64 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=29.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
...|+|++++++...... ..+......-++.+...++ ++.-|+.++..|..
T Consensus 75 ~~advvii~vpt~~~~~~-------~~d~~~v~~~~~~i~~~l~---~g~lvi~~STv~pg 125 (411)
T TIGR03026 75 RDADVIIICVPTPLKEDG-------SPDLSYVESAAETIAKHLR---KGATVVLESTVPPG 125 (411)
T ss_pred hhCCEEEEEeCCCCCCCC-------CcChHHHHHHHHHHHHhcC---CCCEEEEeCcCCCC
Confidence 467999999998543211 2355555665666555443 34556666644433
No 206
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.60 E-value=1.1e+02 Score=25.12 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|+|+.|..--.... +..-...-..-++++++.+++..|+..+++++-
T Consensus 66 ~~aDiViita~~~~~~~~~-----r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tN 117 (308)
T cd05292 66 KGADVVVITAGANQKPGET-----RLDLLKRNVAIFKEIIPQILKYAPDAILLVVTN 117 (308)
T ss_pred CCCCEEEEccCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4678999999975321100 000122234457788888888888888888763
No 207
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.59 E-value=1.1e+02 Score=26.48 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=32.1
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
..++|+|+| |=|.... ....+.+..+.. +.++++.+|+++||+.++.+..
T Consensus 36 ~~~ADv~ii----NTC~v~~-------~a~~k~~~~i~~-~~~~~~~~~~~~vvv~GC~a~~ 85 (439)
T PRK14328 36 REEADIIIF----NTCCVRE-------NAENKVFGNLGE-LKKLKEKNPNLIIGVCGCMMQQ 85 (439)
T ss_pred cCcCCEEEE----ecccEec-------hHHHHHHHHHHH-HHHHHhhCCCCEEEEECchhcc
Confidence 356899999 4444321 133445555554 4667777888999999986543
No 208
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=32.58 E-value=1.1e+02 Score=20.31 Aligned_cols=27 Identities=15% Similarity=-0.098 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 94 ~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
-...|.++.+.++++ +.+++++++.|-
T Consensus 56 gl~~L~~l~~~~~~~--g~~l~l~~~~~~ 82 (100)
T cd06844 56 GTGVLLERSRLAEAV--GGQFVLTGISPA 82 (100)
T ss_pred HHHHHHHHHHHHHHc--CCEEEEECCCHH
Confidence 467888888899988 789999987654
No 209
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=32.52 E-value=1.1e+02 Score=24.84 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
..++|++++.+|+- .+. ..-.-|.+.++++-..+... +.-.|-++..|
T Consensus 130 ~~~~dv~i~EiGGT----vGD------iEs~pf~EAirq~~~~~g~~--n~~~ihvt~vp 177 (255)
T cd03113 130 KSGADVVIVEIGGT----VGD------IESLPFLEAIRQMKLELGRE--NVLFIHVTLVP 177 (255)
T ss_pred cCCCCEEEEEeCCc----ccc------ccccHHHHHHHHHHHHhCcC--cEEEEEEeeee
Confidence 36899999999861 110 23334777787777766655 44455566555
No 210
>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH). The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....
Probab=32.49 E-value=1.3e+02 Score=22.57 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=38.5
Q ss_pred EcccCCcchhhH---HHhhcccCCCCCCCCCcEEEEEe-ccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCE
Q 030474 38 LRGYGGYNTRWA---LFLLHHIFPLDNSNPPVATTIFF-GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (177)
Q Consensus 38 N~G~~G~ts~~~---l~~l~~~~~~~~~~~pd~Vvi~~-G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~ 113 (177)
..|.||-..... ..++.++++ ...||+|+--- |+++ .+......++.|..+-..++.++|+++
T Consensus 31 tlgASG~~eg~I~R~s~rFk~Lv~---N~N~dIiFkDEE~tga----------dR~MTkRckdkL~~La~~V~nqwpgvk 97 (160)
T PF01085_consen 31 TLGASGPSEGRITRNSPRFKELVP---NYNPDIIFKDEEGTGA----------DRLMTKRCKDKLNTLAISVMNQWPGVK 97 (160)
T ss_dssp STTTT--------TTSGGGGG-EE------TTEEE--TTSSSG----------GGEE-HHHHHHHHHHHHHHHHHSTT--
T ss_pred ccCCcCccCCcccCCCcccccCee---cCCCceEeeccccCCC----------cccchHHHHHHHHHHHHHHHHhCCCcE
Confidence 367777543332 256666666 47899988743 3222 235678899999999999999999999
Q ss_pred EEEEc
Q 030474 114 VVLIT 118 (177)
Q Consensus 114 vil~t 118 (177)
+-++.
T Consensus 98 LrV~e 102 (160)
T PF01085_consen 98 LRVTE 102 (160)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88875
No 211
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.49 E-value=2.5e+02 Score=22.20 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC--CEEEEEcCC-CCChh
Q 030474 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI--MLVVLITPP-PVDED 125 (177)
Q Consensus 49 ~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~--~~vil~tp~-p~~~~ 125 (177)
+.+||..+++. =.....+.||.+-.+|.. ..++..+.|+.++..+.. +.|+|++-- -..++
T Consensus 80 GQERFrslips-Y~Rds~vaviVyDit~~~---------------Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 80 GQERFRSLIPS-YIRDSSVAVIVYDITDRN---------------SFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred cHHHHhhhhhh-hccCCeEEEEEEeccccc---------------hHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 44788877762 012567888877777654 255667777777766433 445555531 12221
Q ss_pred -HH----HHHHHHhCCCcee
Q 030474 126 -GR----MEYAKYVNSSPYI 140 (177)
Q Consensus 126 -~~----~~~~a~~~~vp~i 140 (177)
++ .++.|.+.++-|+
T Consensus 144 rqvs~eEg~~kAkel~a~f~ 163 (221)
T KOG0094|consen 144 RQVSIEEGERKAKELNAEFI 163 (221)
T ss_pred hhhhHHHHHHHHHHhCcEEE
Confidence 11 2345666777666
No 212
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=32.37 E-value=75 Score=24.01 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+..+=..++.++|+...++.|+.+++|++-+
T Consensus 59 S~~~G~~~~~~~i~~~~~~CP~~kivl~GYS 89 (179)
T PF01083_consen 59 SVAAGVANLVRLIEEYAARCPNTKIVLAGYS 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSEEEEEEET
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 4555577788888888889999999999843
No 213
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.28 E-value=1.6e+02 Score=22.52 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
...+++.++.++++ ++++++++- +.+.+.+++++.-+++||.
T Consensus 48 tpe~~~W~~e~k~~--gi~v~vvSN---n~e~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 48 TPELRAWLAELKEA--GIKVVVVSN---NKESRVARAAEKLGVPFIY 89 (175)
T ss_pred CHHHHHHHHHHHhc--CCEEEEEeC---CCHHHHHhhhhhcCCceee
Confidence 34577888899988 688888874 5566777888888999985
No 214
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=32.28 E-value=1.9e+02 Score=23.25 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCC-CEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 89 VPVEEYGDNLKIMVQHLKRLSPI-MLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~~p~-~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+-.+...++++-+++.++++... ..+++.+||-........-+|.+.++.|.
T Consensus 27 iGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 27 IGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp -S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 35678899999999998875322 35899999999998777777777776664
No 215
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=32.27 E-value=56 Score=30.72 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=33.5
Q ss_pred EEEEecccccccc----CCCCC----CccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 68 TTIFFGANDAALF----GRTSE----RQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 68 Vvi~~G~ND~~~~----~~~~~----~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
=+++|||||..-- ++.+. ....-...+..-++.+++.+++. +.+|=+|+=..
T Consensus 613 DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~--g~~v~vCGe~a 672 (748)
T PRK11061 613 DFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQH--GLPVSLCGEMA 672 (748)
T ss_pred CEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhC--cCEEEEcCCcc
Confidence 3688999998632 11111 01112344678888999999887 68899988443
No 216
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=32.16 E-value=1.1e+02 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=29.6
Q ss_pred cEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc-cccccc
Q 030474 35 DVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA-NDAALF 80 (177)
Q Consensus 35 ~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~-ND~~~~ 80 (177)
+|.-.|--| |..|++.-++..-.......|-+-|+-+|| ||..+.
T Consensus 326 riLVcGGDG-TvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~ 371 (634)
T KOG1169|consen 326 RILVCGGDG-TVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRV 371 (634)
T ss_pred eEEEecCCC-cchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhh
Confidence 344444333 778888777664322224578899999998 999875
No 217
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=32.16 E-value=28 Score=25.81 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=27.8
Q ss_pred hHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHH--HhCCCCEEEEEc
Q 030474 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLK--RLSPIMLVVLIT 118 (177)
Q Consensus 48 ~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r--~~~p~~~vil~t 118 (177)
...+++...+. ..+|++|.| |+|. ....+..+.++.+++... +..+.+.|+++.
T Consensus 50 ~~~~~l~~~i~---~~kP~vI~v--~g~~------------~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~ 105 (150)
T PF14639_consen 50 EDMERLKKFIE---KHKPDVIAV--GGNS------------RESRKLYDDVRDIVEELDEDEQMPPIPVVIVD 105 (150)
T ss_dssp HHHHHHHHHHH---HH--SEEEE----SS------------THHHHHHHHHHHHHHHTTB-TTS-B--EEE--
T ss_pred HHHHHHHHHHH---HcCCeEEEE--cCCC------------hhHHHHHHHHHHHHHHhhhcccCCCceEEEEC
Confidence 34455666665 479999999 3332 245567777777777654 223456666664
No 218
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.94 E-value=2.7e+02 Score=22.36 Aligned_cols=23 Identities=17% Similarity=0.028 Sum_probs=13.4
Q ss_pred CCCccceeecccchhhhhhhhcc
Q 030474 153 PIGKQQLFYHGGCSICYFLLQLS 175 (177)
Q Consensus 153 ~dG~~~~~~~~~~~~~~~~~~~~ 175 (177)
.+|.|-+.-.||+.++.-++++.
T Consensus 165 ~~gshlv~Vppg~~L~d~l~ssP 187 (259)
T KOG2884|consen 165 GDGSHLVSVPPGPLLSDALLSSP 187 (259)
T ss_pred CCCceEEEeCCCccHHHHhhcCc
Confidence 45666666666665555555543
No 219
>PRK04940 hypothetical protein; Provisional
Probab=31.91 E-value=1e+02 Score=23.61 Aligned_cols=67 Identities=7% Similarity=0.053 Sum_probs=41.0
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcc---------hh--hHH-HhhcccCCCCCCCCCcEEEEE
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYN---------TR--WAL-FLLHHIFPLDNSNPPVATTIF 71 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~t---------s~--~~l-~~l~~~~~~~~~~~pd~Vvi~ 71 (177)
.++++|.|+= |+ |+..|+..+.-+.-++|-++.-+. .. .+. +.+++.. ...|+.+.+.
T Consensus 61 ~~~liGSSLG--Gy----yA~~La~~~g~~aVLiNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL~----~~~p~r~~vl 130 (180)
T PRK04940 61 RPLICGVGLG--GY----WAERIGFLCGIRQVIFNPNLFPEENMEGKIDRPEEYADIATKCVTNFR----EKNRDRCLVI 130 (180)
T ss_pred CcEEEEeChH--HH----HHHHHHHHHCCCEEEECCCCChHHHHHHHhCCCcchhhhhHHHHHHhh----hcCcccEEEE
Confidence 5788999985 43 888999888655557775554221 00 111 1111221 3678888888
Q ss_pred ecccccccc
Q 030474 72 FGANDAALF 80 (177)
Q Consensus 72 ~G~ND~~~~ 80 (177)
+.+.|-...
T Consensus 131 lq~gDEvLD 139 (180)
T PRK04940 131 LSRNDEVLD 139 (180)
T ss_pred EeCCCcccC
Confidence 888887653
No 220
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=31.67 E-value=2.1e+02 Score=21.01 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.0
Q ss_pred CCceEEEEecccC
Q 030474 1 MRPQIVLFGDSIT 13 (177)
Q Consensus 1 ~~~~I~~~GDSit 13 (177)
|..+|+++.|.-.
T Consensus 1 ~~~~ilivdd~~~ 13 (226)
T TIGR02154 1 MTRRILVVEDEPA 13 (226)
T ss_pred CCCeEEEEeCCHH
Confidence 6788888888755
No 221
>PRK14725 pyruvate kinase; Provisional
Probab=31.66 E-value=1e+02 Score=28.30 Aligned_cols=60 Identities=22% Similarity=0.142 Sum_probs=44.6
Q ss_pred hhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 47 RWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 47 ~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+++.|++++..+....+|.|.|+=| |.... ++.++...--++||..+++. +.+||+.|
T Consensus 483 ~~av~nL~eIl~~am~~~~DGIMIARG--DLgvE--------i~~e~lp~iQk~Ii~~c~~~--~kPVI~AT 542 (608)
T PRK14725 483 RRAFENLPRILLEAMRHPRFGVMIARG--DLAVE--------VGFERLAEVQEEILWLCEAA--HVPVIWAT 542 (608)
T ss_pred HHHHHHHHHHHHhhccCCCcEEEEECC--ccccc--------cCHHHHHHHHHHHHHHHHHc--CCCEEEEc
Confidence 345556666654333456899999888 77653 78999999999999999998 56788866
No 222
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=31.64 E-value=1.2e+02 Score=23.52 Aligned_cols=66 Identities=9% Similarity=-0.129 Sum_probs=34.3
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcc-c---CcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCR-K---ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~-~---~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||+++.+ .-...=...+.+.+.. + ..+ ..++-.+.-....+.+.+... ....|+|++.-|+
T Consensus 7 aIItvSd~~~~G-~i~D~ng~~L~~~L~~~G~~g~~v-~~~iVpDd~~~I~~aL~~a~~---~~~~DlIITTGGt 76 (193)
T PRK09417 7 GLVSISDRASSG-VYEDKGIPALEEWLASALTSPFEI-ETRLIPDEQDLIEQTLIELVD---EMGCDLVLTTGGT 76 (193)
T ss_pred EEEEEcCcCCCC-ceeechHHHHHHHHHHcCCCCceE-EEEECCCCHHHHHHHHHHHhh---cCCCCEEEECCCC
Confidence 578899999863 2211112234444421 1 223 224444544444455555432 2468999988664
No 223
>PRK14532 adenylate kinase; Provisional
Probab=31.45 E-value=89 Score=23.24 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|++++||........+.+++..++++|+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48899999999988888889989988884
No 224
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=31.21 E-value=81 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
..+.+-++..++..++..++.+|-+|+=..-+
T Consensus 801 paV~~li~~~i~~a~~~~~~~~vgvCGE~a~d 832 (856)
T TIGR01828 801 TGVGQLMRMAVEKGRQTRPNLKVGICGEHGGD 832 (856)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEeCCCCcCC
Confidence 34566677777777765467889888754433
No 225
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.04 E-value=1.6e+02 Score=25.89 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=41.9
Q ss_pred CcEEEcccCCcc--hhhHHHhhccc-C-CCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 030474 34 ADVLLRGYGGYN--TRWALFLLHHI-F-PLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (177)
Q Consensus 34 ~~v~N~G~~G~t--s~~~l~~l~~~-~-~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~ 109 (177)
+.+...|..=+. |..+...|.+. . .......+|+|+| |=|.... -..++.+..+.. +..+++.+
T Consensus 26 ~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADivii----NTC~v~~-------~a~~k~~~~i~~-~~~~k~~~ 93 (467)
T PRK14329 26 LFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLV----NTCSIRD-------NAEQKVRKRLEK-FNALKKKN 93 (467)
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEE----eCcceec-------hHHHHHHHHHHH-HHHHHhhC
Confidence 566777876433 33333333221 0 0112456899999 4443211 122233333322 36678888
Q ss_pred CCCEEEEEcCCCCC
Q 030474 110 PIMLVVLITPPPVD 123 (177)
Q Consensus 110 p~~~vil~tp~p~~ 123 (177)
|+++||+.++.+..
T Consensus 94 p~~~ivvgGc~a~~ 107 (467)
T PRK14329 94 PKLIVGVLGCMAER 107 (467)
T ss_pred CCcEEEEECChhcC
Confidence 99999999987643
No 226
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.97 E-value=2e+02 Score=21.99 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCCCCh------hHHHHHHHHhCCCceee
Q 030474 90 PVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPPVDE------DGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p~~~------~~~~~~~a~~~~vp~id 141 (177)
+.++..-|++..+.+++.+ ..+..||+++--.--+ +...+..|+++++||+.
T Consensus 101 T~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 101 TSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred cchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 4455667788888888776 2355689987432111 22345668889999984
No 227
>COG2403 Predicted GTPase [General function prediction only]
Probab=30.88 E-value=98 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCCcEEEEEeccccccccCC------------------CCCCccCC----------HHHHHHHHHHHHHHHHHhCCCCEE
Q 030474 63 NPPVATTIFFGANDAALFGR------------------TSERQHVP----------VEEYGDNLKIMVQHLKRLSPIMLV 114 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~------------------~~~~~~~~----------~~~~~~nl~~ii~~~r~~~p~~~v 114 (177)
...|+|++.-|.||.-.... ..+..++. -+-..++++++.+.+++.+|++.|
T Consensus 223 ~~aD~IlwdGgnndfPfvkpd~~Ivvvda~rpg~ei~~~pGe~~irlAD~VIItkveea~~~kvrkI~~~I~~iNP~A~V 302 (449)
T COG2403 223 KEADFILWDGGNNDFPFVKPDLHIVVVDALRPGEEIGSFPGELRIRLADLVIITKVEEAMAEKVRKIVRNIEEINPKAEV 302 (449)
T ss_pred hhccEEEEeCCCCCCCcccCCeeEEEecCCCCchhhccCCCceeeeeccEEEEecccccchHHHHHHHHHHHhhCCCcEE
Confidence 34589988888898764421 01111111 133456999999999999999999
Q ss_pred EEEc
Q 030474 115 VLIT 118 (177)
Q Consensus 115 il~t 118 (177)
+...
T Consensus 303 i~~~ 306 (449)
T COG2403 303 ILAA 306 (449)
T ss_pred Eecc
Confidence 8863
No 228
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=30.72 E-value=1.2e+02 Score=19.94 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=30.8
Q ss_pred cEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC
Q 030474 66 VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (177)
Q Consensus 66 d~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~ 111 (177)
-.+.|..+...+......+....++.+-|.+-|.++.+.+++..|.
T Consensus 31 vMl~vwWd~~Gvi~~e~L~~~~TIts~~Y~~ql~~l~~~l~~krp~ 76 (81)
T PF01359_consen 31 VMLSVWWDAKGVIHYELLPPGKTITSEYYCQQLDKLKQALREKRPE 76 (81)
T ss_dssp EEEEEEEETTEEEEEEEESTT---SHHHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEeeccCcEeeeeCCCCccccHHHHHHHHHHHHHHHHHhChH
Confidence 3466666766555433233445689999999999999999988663
No 229
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=30.67 E-value=1.3e+02 Score=20.04 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
...|..++++++++ +.+++++++.|.-.
T Consensus 57 i~~L~~~~~~~~~~--g~~l~l~~~~~~v~ 84 (106)
T TIGR02886 57 LGVILGRYKKIKNE--GGEVIVCNVSPAVK 84 (106)
T ss_pred HHHHHHHHHHHHHc--CCEEEEEeCCHHHH
Confidence 56677788888887 68999999776433
No 230
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.32 E-value=1.3e+02 Score=26.18 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=29.8
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
..++|+|+| |=|..-. ....+.++.+.. ++++|+.+|+++|++.++.+
T Consensus 35 ~~~aDviii----NTC~v~~-------~a~~k~~~~i~~-~~~~k~~~p~~~ivv~Gc~a 82 (437)
T PRK14331 35 WEEADLILV----NTCTIRE-------KPDQKVLSHLGE-YKKIKEKNPNALIGVCGCLA 82 (437)
T ss_pred cccCCEEEE----eCcceec-------HHHHHHHHHHHH-HHHHHHhCCCCEEEEEcchh
Confidence 356899999 4443211 123344444443 36788888999999988654
No 231
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=30.16 E-value=1.9e+02 Score=22.46 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 98 LKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+.+.++.++++ ..+|++++|.|
T Consensus 168 ~~~~l~~l~~r--~~rviwLnP~~ 189 (222)
T PF05762_consen 168 LAEELRRLRRR--GRRVIWLNPLP 189 (222)
T ss_pred HHHHHHHHHHh--CCEEEEECCcc
Confidence 34455666777 57899999974
No 232
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=29.82 E-value=1.8e+02 Score=19.69 Aligned_cols=70 Identities=9% Similarity=-0.130 Sum_probs=40.8
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..++.+.+.|... .-....+. .. ..+||+|.++.-. .... ...+.+..++++.|
T Consensus 25 ~~G~~v~~l~~~~-~~~~~~~~---i~----~~~pdiV~iS~~~-----------------~~~~-~~~~~~~~~~~~~p 78 (125)
T cd02065 25 DNGFEVIDLGVDV-PPEEIVEA---AK----EEDADVVGLSALS-----------------TTHM-EAMKLVIEALKELG 78 (125)
T ss_pred HCCCEEEEcCCCC-CHHHHHHH---HH----HcCCCEEEEecch-----------------HhHH-HHHHHHHHHHHhcC
Confidence 4578888887642 12222222 22 2679999985421 1122 33444455666667
Q ss_pred -CCEEEEEcCCCCChhH
Q 030474 111 -IMLVVLITPPPVDEDG 126 (177)
Q Consensus 111 -~~~vil~tp~p~~~~~ 126 (177)
++++++-++.+...+.
T Consensus 79 ~~~~ivvGG~~~t~~~~ 95 (125)
T cd02065 79 IDIPVVVGGAHPTADPE 95 (125)
T ss_pred CCCeEEEeCCcCCcccc
Confidence 8999998887766544
No 233
>PRK00625 shikimate kinase; Provisional
Probab=29.67 E-value=1e+02 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.|+++++|...+....+.+++..+.+|+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999999996
No 234
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=29.64 E-value=56 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH
Q 030474 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG 126 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~ 126 (177)
+++.|+ ..+..+++.++++.|+.+|++.+.++...+.
T Consensus 29 ~SvGE~-~a~~~Li~~l~~~~p~~~illT~~T~tg~~~ 65 (186)
T PF04413_consen 29 ASVGEV-NAARPLIKRLRKQRPDLRILLTTTTPTGREM 65 (186)
T ss_dssp SSHHHH-HHHHHHHHHHTT---TS-EEEEES-CCHHHH
T ss_pred CCHHHH-HHHHHHHHHHHHhCCCCeEEEEecCCchHHH
Confidence 355554 4577899999999999999999988876654
No 235
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=29.60 E-value=56 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=21.4
Q ss_pred EEEEEecc-ccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Q 030474 67 ATTIFFGA-NDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (177)
Q Consensus 67 ~Vvi~~G~-ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~ 117 (177)
+|+++||| ++-. ....+..+.+.+++++|+..|...
T Consensus 3 IllvsFGTs~~~a---------------r~~ti~~ie~~~~~~fp~~~V~~A 39 (262)
T PF06180_consen 3 ILLVSFGTSYPEA---------------REKTIDAIEKAVREAFPDYDVRRA 39 (262)
T ss_dssp EEEEE---S-CCC---------------CHHHHHHHHHHHHHCSTTSEEEEE
T ss_pred EEEEeCCCCCHHH---------------HHHHHHHHHHHHHHHCCCCcEEEE
Confidence 67888997 2221 133677777778888888777665
No 236
>PRK14530 adenylate kinase; Provisional
Probab=29.41 E-value=1e+02 Score=23.65 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 112 MLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 112 ~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.+|++++||........+.+++..++++++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 479999999999998889999999999984
No 237
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=29.35 E-value=1.6e+02 Score=18.82 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 98 LKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+..-+++++++.|. -+|+.+-.|..-+...++.|++.+++.+
T Consensus 20 i~~~Ld~~~~~~~~-~~lvhGga~~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 20 IWAALDKVHARHPD-MVLVHGGAPKGADRIAARWARERGVPVI 61 (71)
T ss_pred HHHHHHHHHHhCCC-EEEEECCCCCCHHHHHHHHHHHCCCeeE
Confidence 56666777877764 3566666678888888888898999887
No 238
>PRK06223 malate dehydrogenase; Reviewed
Probab=29.20 E-value=1.3e+02 Score=24.51 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHH---HHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVE---EYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~---~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+++.|.-.-. + ....+ +-.+-++++++.+.+..|+..+|+.+-|
T Consensus 69 ~~aDiVii~~~~p~~~------~--~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 69 AGSDVVVITAGVPRKP------G--MSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred CCCCEEEECCCCCCCc------C--CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 4679999998863211 0 11222 3345566777778778888777777633
No 239
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.16 E-value=1.3e+02 Score=26.20 Aligned_cols=78 Identities=9% Similarity=-0.028 Sum_probs=41.4
Q ss_pred cCcEEEcccCCcc--hhhHHHhhccc-C-CCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 030474 33 KADVLLRGYGGYN--TRWALFLLHHI-F-PLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 33 ~~~v~N~G~~G~t--s~~~l~~l~~~-~-~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~ 108 (177)
++.+...|..=+. |..+...|.+. . .......+|+|+| |=|..-. ...++..+.+.++.. .++.
T Consensus 8 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiii----NTC~v~~-------~a~~~~~~~i~~~~~-~k~~ 75 (448)
T PRK14333 8 SYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLY----NTCTIRD-------NAEQKVYSYLGRQAK-RKHK 75 (448)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEE----Eeeeeee-------hHHHHHHHHHHHHHH-HHhc
Confidence 4556667766332 33333333221 0 0112356899999 4444321 123444555555433 2667
Q ss_pred CCCCEEEEEcCCCC
Q 030474 109 SPIMLVVLITPPPV 122 (177)
Q Consensus 109 ~p~~~vil~tp~p~ 122 (177)
+|+++|++.++.+.
T Consensus 76 ~p~~~vvv~Gc~a~ 89 (448)
T PRK14333 76 NPDLTLVVAGCVAQ 89 (448)
T ss_pred CCCCEEEEECccCc
Confidence 78999999998664
No 240
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=29.06 E-value=1.8e+02 Score=26.76 Aligned_cols=62 Identities=27% Similarity=0.261 Sum_probs=32.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
.++++.||.=.+ +.. .+.+.. ..+.+|.-.+.-|..+..-.+-+++ -+|++++|+.|-|...
T Consensus 575 ~~~L~tGD~~~~------~E~-~l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~~-------v~P~~aiiS~g~~N~y 637 (662)
T TIGR00361 575 NSWLLTGDLEAE------GEQ-EVMRVFPNIKADVLQVGHHGSKTSTSEELIQQ-------VQPKVAIISAGRNNRW 637 (662)
T ss_pred eeEEEecCCCHH------HHH-HHHhcccCcCccEEEeCCCCCCCCChHHHHHh-------cCCCEEEEECCCCCCC
Confidence 357777776443 121 222221 2246677666655433222222222 4689999999986654
No 241
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=29.03 E-value=2.1e+02 Score=22.80 Aligned_cols=46 Identities=13% Similarity=0.017 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
..+++-++.++..++.. ..|++.+|+-..+....+.++...+.+++
T Consensus 5 ~~~~~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 34555556666666643 46899999999999888888877777776
No 242
>PRK14531 adenylate kinase; Provisional
Probab=28.96 E-value=1e+02 Score=23.02 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|++++||........+.++++.++++|+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 68999999999998888899999998884
No 243
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=28.96 E-value=3.3e+02 Score=24.25 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH--HHHHHHHhCCCcee
Q 030474 88 HVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG--RMEYAKYVNSSPYI 140 (177)
Q Consensus 88 ~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~--~~~~~a~~~~vp~i 140 (177)
..+.+.|.+.=++.|+.+++.+..--|+|-+.-|..++. ..+...+++++|.+
T Consensus 159 dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVl 213 (492)
T PF09547_consen 159 DIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVL 213 (492)
T ss_pred CCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 378899999999999999999754445555667877764 34666777777776
No 244
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=28.90 E-value=2.6e+02 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=13.0
Q ss_pred HHHHHHHhCCCCEEEEEcCC
Q 030474 101 MVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 101 ii~~~r~~~p~~~vil~tp~ 120 (177)
+++.+++..+..+||+++..
T Consensus 68 ~~~~l~~~~~~~~iivls~~ 87 (225)
T PRK10046 68 LLHELVQAHYPGDVVFTTAA 87 (225)
T ss_pred HHHHHHhcCCCCCEEEEEcC
Confidence 44555665566788888754
No 245
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=28.90 E-value=99 Score=23.41 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=26.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|++++||-.......+.+++..++|.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 68999999999998888999889988885
No 246
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=28.73 E-value=1.1e+02 Score=24.76 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~ 117 (177)
..+.+-||+++...|.......+....--...+++.|.+|.+.+..+.| +-|++.
T Consensus 23 r~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~P-VYvv~T 77 (266)
T PF14331_consen 23 RQPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLP-VYVVFT 77 (266)
T ss_pred CCCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCC-eEeeeE
Confidence 3566999999999998765310000011133444555555555555554 333443
No 247
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.73 E-value=1.8e+02 Score=23.24 Aligned_cols=45 Identities=7% Similarity=0.160 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-HHHHHHHHhCCCceee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDED-GRMEYAKYVNSSPYIN 141 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-~~~~~~a~~~~vp~id 141 (177)
.+.+.++++.++++ ++++|++.|..-... .....++++.+++.+.
T Consensus 192 ~~~l~~l~~~ik~~--~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~ 237 (264)
T cd01020 192 PADIAAFQNAIKNR--QIDALIVNPQQASSATTNITGLAKRSGVPVVE 237 (264)
T ss_pred HHHHHHHHHHHHhC--CCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEe
Confidence 66789999999998 789999988764443 2233568888888763
No 248
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=28.71 E-value=73 Score=24.57 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=30.6
Q ss_pred EEEEeccccccccC-C---CCCCccCCHHHHHHHHHHHHHHHHHhC-CCCE
Q 030474 68 TTIFFGANDAALFG-R---TSERQHVPVEEYGDNLKIMVQHLKRLS-PIML 113 (177)
Q Consensus 68 Vvi~~G~ND~~~~~-~---~~~~~~~~~~~~~~nl~~ii~~~r~~~-p~~~ 113 (177)
|++-.|||.-..-. . ...+++++-++|-+-++++++.+++.+ |++-
T Consensus 113 v~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~~~ 163 (182)
T PF00390_consen 113 VCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPNAL 163 (182)
T ss_dssp EEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCTSE
T ss_pred eEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCCeE
Confidence 66778986544321 1 234567899999999999999999998 6653
No 249
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=28.66 E-value=78 Score=27.01 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEE
Q 030474 96 DNLKIMVQHLKRLSPIMLVVL 116 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil 116 (177)
++..++++.+|+.+|+..||.
T Consensus 134 ~~~~~~ik~ik~~~~~~~via 154 (352)
T PF00478_consen 134 EHVIDMIKKIKKKFPDVPVIA 154 (352)
T ss_dssp HHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEe
Confidence 444567888899998777765
No 250
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=28.57 E-value=1.7e+02 Score=20.05 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHh
Q 030474 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYV 134 (177)
Q Consensus 97 nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~ 134 (177)
.=+..|+++.+.+|+.+.||++=.--.+.+....++++
T Consensus 50 ~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~ 87 (100)
T PF09949_consen 50 HKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARR 87 (100)
T ss_pred HHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHH
Confidence 33455667778899999999997766666666666664
No 251
>PRK13946 shikimate kinase; Provisional
Probab=28.55 E-value=1.1e+02 Score=22.84 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 111 IMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 111 ~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
...|++++++........+.+++..+.+|+|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id 40 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLD 40 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeEC
Confidence 3469999999999999999999999999996
No 252
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=28.30 E-value=79 Score=19.76 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
++..+++.|+.++++.+.+. +.+|+++.
T Consensus 4 vs~~e~r~~~~~~l~~v~~~--~~pv~It~ 31 (75)
T PF02604_consen 4 VSITEFRNNFSELLDEVEEG--EEPVIITK 31 (75)
T ss_dssp EEHHHHHHTHHHHHHHHHHC--T-EEEEEE
T ss_pred ecHHHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 67889999999999999986 33355443
No 253
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=28.24 E-value=1.6e+02 Score=22.02 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|.+++++-..|.. .+..-+...++.+++..|++++||++
T Consensus 75 ~~ad~~ilvyDit~~~--------------Sf~~~~~~w~~~i~~~~~~~piilVg 116 (182)
T cd04172 75 PDSDAVLICFDISRPE--------------TLDSVLKKWKGEIQEFCPNTKMLLVG 116 (182)
T ss_pred CCCCEEEEEEECCCHH--------------HHHHHHHHHHHHHHHHCCCCCEEEEe
Confidence 4578888888754432 22222356666667666778888886
No 254
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=28.19 E-value=1.6e+02 Score=25.45 Aligned_cols=48 Identities=8% Similarity=-0.039 Sum_probs=29.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhC-CCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLS-PIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~-p~~~vil~t 118 (177)
...|+|||..|.-.- .+ ....+.+..| ++++...+.+.. |++.||+++
T Consensus 119 kdaDIVVitAG~prk--pg------~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 119 EDADWALLIGAKPRG--PG------MERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred CCCCEEEECCCCCCC--CC------CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 457888888876321 11 1233333333 677777788744 888888887
No 255
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=28.14 E-value=2.3e+02 Score=23.73 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|..=-- + +...+-+..| ++.+.+.+.+..|++.++++|-|
T Consensus 68 ~~aDiVvitAG~prKp------G--mtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNP 120 (313)
T COG0039 68 KGADIVVITAGVPRKP------G--MTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120 (313)
T ss_pred cCCCEEEEeCCCCCCC------C--CCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCc
Confidence 4678888888753211 1 2344445555 45566667777888888887743
No 256
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=28.09 E-value=1e+02 Score=27.20 Aligned_cols=49 Identities=14% Similarity=0.018 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEEcCCCCChhHHH-HHHHHhCCCcee
Q 030474 92 EEYGDNLKIMVQHLKRL-SPIMLVVLITPPPVDEDGRM-EYAKYVNSSPYI 140 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~-~p~~~vil~tp~p~~~~~~~-~~~a~~~~vp~i 140 (177)
+.|...++.-+...... .....|+++||-+.++.... +++|+.-+++++
T Consensus 200 ~~y~~~l~~~L~~~a~~~~~dP~VvVLTPG~yNsaYFEHayLA~~lGv~Lv 250 (488)
T COG2308 200 AGYAQALLDALISAAPGDAADPRVVVLTPGIYNSAYFEHAYLARQLGVELV 250 (488)
T ss_pred cchHHHHHHHHHhhCcccCCCCeEEEeCCCCchHHHHHHHHHHHHhCceee
Confidence 44444454444444433 34567899999999987543 567887787777
No 257
>PLN02285 methionyl-tRNA formyltransferase
Probab=28.09 E-value=1.3e+02 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEE-EcCCCCChh----H---HHHHHHHhCCCce
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVL-ITPPPVDED----G---RMEYAKYVNSSPY 139 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil-~tp~p~~~~----~---~~~~~a~~~~vp~ 139 (177)
..+|+.|++..+....+..|+. +|.++-... . -....|+++++|+
T Consensus 19 ~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~ 71 (334)
T PLN02285 19 ATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPP 71 (334)
T ss_pred HHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCc
Confidence 6788899888766543455544 454432210 0 1345577888983
No 258
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.01 E-value=2e+02 Score=25.58 Aligned_cols=79 Identities=15% Similarity=0.034 Sum_probs=43.3
Q ss_pred cCcEEEcccCCcc--hhhHHHhhccc-C-CCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 030474 33 KADVLLRGYGGYN--TRWALFLLHHI-F-PLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 33 ~~~v~N~G~~G~t--s~~~l~~l~~~-~-~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~ 108 (177)
++.+...|..=+. |..+...|.+. . ......++|+|+| |=|.... ...++....+.. ++.+|+.
T Consensus 15 ~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvvi----NTCtv~~-------~A~~k~~~~i~~-~~~~k~~ 82 (502)
T PRK14326 15 TYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVF----NTCAVRE-------NADNRLYGNLGH-LAPVKRA 82 (502)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEE----ECCCeee-------hHHHHHHHHHHH-HHHHHHh
Confidence 3666777776433 22233333211 0 0112356899999 4443321 123444445554 4677888
Q ss_pred CCCCEEEEEcCCCCC
Q 030474 109 SPIMLVVLITPPPVD 123 (177)
Q Consensus 109 ~p~~~vil~tp~p~~ 123 (177)
+|+++||+.++.+..
T Consensus 83 ~p~~~VvvgGc~a~~ 97 (502)
T PRK14326 83 NPGMQIAVGGCLAQK 97 (502)
T ss_pred CCCCEEEEECccccc
Confidence 889999999876643
No 259
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=28.00 E-value=87 Score=25.08 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=36.0
Q ss_pred hHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 030474 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (177)
Q Consensus 48 ~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~ 109 (177)
..++.++++.. -|.+-.|++|.||....-+..+. ..-.++.+.++++++.++.+.
T Consensus 150 ~av~n~~eI~a-----~~gvd~l~~G~~DLs~slG~~~~--~~~~~~~~a~~~v~~~~~~a~ 204 (249)
T TIGR02311 150 EALDNLEEIAA-----VEGVDGVFIGPADLAASMGHLGN--PSHPEVQAAIDDAIERIKAAG 204 (249)
T ss_pred HHHHHHHHHHC-----CCCCcEEEECHHHHHHhcCCCCC--CCChHHHHHHHHHHHHHHHcC
Confidence 34445555542 36788899999999876432221 223467788888899988874
No 260
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=27.96 E-value=87 Score=27.29 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..-|+.||+.+|+..|++.|.++|-.|...
T Consensus 17 eAil~~ii~~l~~~~p~~~i~v~S~~P~~t 46 (426)
T PRK10017 17 SAILRGLLDAINILNPHAEVDVMSRYPVSS 46 (426)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCccch
Confidence 567899999999999999999999887654
No 261
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.94 E-value=2.3e+02 Score=21.12 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=34.6
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
+..+++|.+|==-|.. .=.....+|.++.+++.+...+.++|.+|.-|-.+
T Consensus 51 ~Gk~~lv~F~yT~Cpd----------vCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~D 101 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPD----------VCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERD 101 (174)
T ss_dssp TTSEEEEEEE-TTSSS----------HHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC
T ss_pred CCCeEEEEEEEcCCCc----------cCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCC
Confidence 4467777777433221 12345778889999998875578999999988643
No 262
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=27.85 E-value=1.8e+02 Score=19.69 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCC---hhHHHHHHHHhCCCcee
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPVD---EDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~~---~~~~~~~~a~~~~vp~i 140 (177)
++.+.+++. ....|+-.|.... +..+.++.|-++++|++
T Consensus 58 ~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 58 NIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred hHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEE
Confidence 356666665 5677777665322 23567788889999998
No 263
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=27.79 E-value=1.6e+02 Score=23.82 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.++++ ++++|++.|..-. ...+.++++.+++.+
T Consensus 206 ~~~l~~l~~~ik~~--~v~~if~e~~~~~--~~~~~la~~~g~~v~ 247 (282)
T cd01017 206 PKQLAELVEFVKKS--DVKYIFFEENASS--KIAETLAKETGAKLL 247 (282)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCCh--HHHHHHHHHcCCcEE
Confidence 56788999999998 7899999876543 345568888888876
No 264
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=27.69 E-value=1e+02 Score=20.63 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=29.4
Q ss_pred CCCcEEEEEe-ccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFF-GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~-G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
..++.|++-+ |++-. +. .-...+.++++.++++ +.+++++++.|-
T Consensus 39 ~~~~~vvlDls~v~~i------------Ds-sg~~~l~~~~~~~~~~--g~~l~l~g~~~~ 84 (109)
T cd07041 39 RRARGVIIDLTGVPVI------------DS-AVARHLLRLARALRLL--GARTILTGIRPE 84 (109)
T ss_pred cCCCEEEEECCCCchh------------cH-HHHHHHHHHHHHHHHc--CCeEEEEeCCHH
Confidence 3567888855 33222 22 2355777888888877 688999987653
No 265
>PRK13948 shikimate kinase; Provisional
Probab=27.61 E-value=1.4e+02 Score=22.62 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 110 PIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 110 p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+...|+|++++...+....+.+++..+.+|+|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD 40 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFID 40 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45789999999999999999999989999996
No 266
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.54 E-value=1.6e+02 Score=20.17 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=26.7
Q ss_pred HHHHHHHH-hCCCCEEEEEcCCCCC---h---hHHHHHHHHhCCCcee
Q 030474 100 IMVQHLKR-LSPIMLVVLITPPPVD---E---DGRMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~-~~p~~~vil~tp~p~~---~---~~~~~~~a~~~~vp~i 140 (177)
++++.+++ . ++.+|+.+|.+.. . ....++.|.+++||++
T Consensus 58 ~i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 58 TVDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVT 103 (112)
T ss_pred HHHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEE
Confidence 35666666 4 6788888776544 1 2345677888999998
No 267
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=27.51 E-value=2.4e+02 Score=20.87 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|.+++.+-.+|.. +.+ .-+...++.+++..|++++++++
T Consensus 71 ~~a~~~ilvfdit~~~-----------Sf~---~~~~~w~~~i~~~~~~~~iilVg 112 (178)
T cd04131 71 PDSDAVLICFDISRPE-----------TLD---SVLKKWRGEIQEFCPNTKVLLVG 112 (178)
T ss_pred CCCCEEEEEEECCChh-----------hHH---HHHHHHHHHHHHHCCCCCEEEEE
Confidence 4568998888665532 222 22355666666666788888876
No 268
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=27.49 E-value=2.2e+02 Score=23.75 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=24.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC--CChhHH---HHHHHHhCCCceee
Q 030474 88 HVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP--VDEDGR---MEYAKYVNSSPYIN 141 (177)
Q Consensus 88 ~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p--~~~~~~---~~~~a~~~~vp~id 141 (177)
+.+.....+.++.+ +.+-...|+++|+-++... +++++. .+++.++.++|..|
T Consensus 234 ~~~ip~l~~~I~l~-e~la~~~~~~~VvgIslNt~~l~~~e~~~~~~~~~~e~glPv~D 291 (301)
T PF07755_consen 234 HYPIPPLEEEIELI-EALAGTKPPAKVVGISLNTSGLSEEEAKAAIERIEEELGLPVTD 291 (301)
T ss_dssp TSC---HHHHHHHH-HHCCCGC---EEEEEECC-TTS-HHHHHHHHHHHHHHH-S-EE-
T ss_pred cCCCCCHHHHHHHH-HHhhccCCCccEEEEEEECCCCCHHHHHHHHHHHHHHHCCCeee
Confidence 34555555554444 4444333678899888654 454443 35567788999887
No 269
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=27.38 E-value=1.6e+02 Score=25.77 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=36.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh--------HHHHHHHHhCCCcee
Q 030474 87 QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED--------GRMEYAKYVNSSPYI 140 (177)
Q Consensus 87 ~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~--------~~~~~~a~~~~vp~i 140 (177)
-++|..++..|++-.-+... +++..+++|.+.+-. .....+|..+++.|+
T Consensus 268 GHvPl~~I~~nv~l~K~lc~----~APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~GAdfL 325 (431)
T PRK13352 268 GHVPLDQIEANVKLQKRLCH----GAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADFL 325 (431)
T ss_pred CCCCHHHHHHHHHHHHHhhC----CCCceecCccccccCCCchHHHHHHHHHHHHhcCCCeE
Confidence 36899999999876533333 678999999887642 345566778888887
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=27.30 E-value=1e+02 Score=20.76 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.|++.++|-.......+.+++..++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~ 29 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVIS 29 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence 37888999999999999999988888873
No 271
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=27.23 E-value=95 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|++++||........+.+++..++++|.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 48889999999888888888888888883
No 272
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=27.04 E-value=1.6e+02 Score=21.84 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
+....-..+.++++.++++ +++||.+|-.+-.+
T Consensus 83 S~sG~t~~~i~~~~~ak~~--g~~iI~IT~~~~s~ 115 (179)
T cd05005 83 SGSGETSSVVNAAEKAKKA--GAKVVLITSNPDSP 115 (179)
T ss_pred cCCCCcHHHHHHHHHHHHC--CCeEEEEECCCCCc
Confidence 3333456667888999988 78999998766554
No 273
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=26.92 E-value=1.2e+02 Score=24.28 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=37.2
Q ss_pred CcchhhHHHhhcccCCCC-CCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC
Q 030474 43 GYNTRWALFLLHHIFPLD-NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (177)
Q Consensus 43 G~ts~~~l~~l~~~~~~~-~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~ 111 (177)
|.+.....+|+.+..+.. ....+|+|+. ||.. .+.++.++.+.++++.++++.|.
T Consensus 159 g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~----N~~~----------g~~~~L~~~v~~~~~~~~~~~~~ 214 (244)
T PTZ00451 159 GFSKEEALQRIGSQMPLEEKRRLADYIIE----NDSA----------DDLDELRGSVCDCVAWMSRQSNK 214 (244)
T ss_pred CCCHHHHHHHHHhCCCHHHHHHhCCEEEE----CCCC----------CCHHHHHHHHHHHHHHHHhhCCh
Confidence 455556666665443311 2346899887 6632 26888999999999999988764
No 274
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=26.92 E-value=3e+02 Score=21.33 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=45.5
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceeecc
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYINCF 143 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id~~ 143 (177)
+||.|+++.=.=|.+... ..+..+.+.+.+.++.+++. +.+|+++. -..+. .......+..++..+..
T Consensus 30 ~~d~lii~GDi~d~~~~~-------~~~~~~~~~~~~~l~~L~~~--~~~v~~v~-GNHD~-~~~~~~~~~~gi~~l~~- 97 (231)
T TIGR01854 30 KADALYILGDLFEAWIGD-------DDPSTLARSVAQAIRQVSDQ--GVPCYFMH-GNRDF-LIGKRFAREAGMTLLPD- 97 (231)
T ss_pred cCCEEEEcCceeccccCC-------CCCCHHHHHHHHHHHHHHHC--CCeEEEEc-CCCch-hhhHHHHHHCCCEEECC-
Confidence 689888865444433211 11223445666677777755 35666653 33332 22333445567766632
Q ss_pred cCCCCCCCCCCCccceeeccc
Q 030474 144 LGRPPKYPQPIGKQQLFYHGG 164 (177)
Q Consensus 144 l~~~~~~l~~dG~~~~~~~~~ 164 (177)
+..+..+|.+.+..||.
T Consensus 98 ----~~~~~~~g~~ill~HGd 114 (231)
T TIGR01854 98 ----PSVIDLYGQKVLLMHGD 114 (231)
T ss_pred ----CEEEEECCEEEEEEcCc
Confidence 22345577777778875
No 275
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=1.2e+02 Score=26.31 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 103 QHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 103 ~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+.+|..--.-.|++++|+.+......+++|...++||+.
T Consensus 42 ~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 42 EELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred HHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 345554222468999999999999999999999999993
No 276
>TIGR00035 asp_race aspartate racemase.
Probab=26.62 E-value=1.3e+02 Score=23.42 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+.++....+.+.++++.+. +++.|++.-.- ...+...+++...+|++
T Consensus 56 ~~~~~~~~l~~~~~~L~~~--g~d~iviaCNT--ah~~~~~l~~~~~iPii 102 (229)
T TIGR00035 56 GEDRPRPILIDIAVKLENA--GADFIIMPCNT--AHKFAEDIQKAIGIPLI 102 (229)
T ss_pred CcchHHHHHHHHHHHHHHc--CCCEEEECCcc--HHHHHHHHHHhCCCCEe
Confidence 3456778888889998887 56767664322 11223344444566666
No 277
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=26.55 E-value=1.2e+02 Score=27.87 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred cccCCc-chhhHHHhhcccCCCCCCCCCcEEEEEecc-cccccc
Q 030474 39 RGYGGY-NTRWALFLLHHIFPLDNSNPPVATTIFFGA-NDAALF 80 (177)
Q Consensus 39 ~G~~G~-ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~-ND~~~~ 80 (177)
...+|+ |..|.+.-++.+-. ...|.+-|+-+|+ ||.++-
T Consensus 421 LaCGGDGTVGWiLStLD~L~l---~p~PPvailPLGTGNDLARt 461 (1004)
T KOG0782|consen 421 LACGGDGTVGWILSTLDNLNL---PPYPPVAILPLGTGNDLART 461 (1004)
T ss_pred EEecCCCceeehhhhhhhcCC---CCCCCeeEeecCCcchHHHh
Confidence 344554 67888888887654 4567888888988 998864
No 278
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=26.50 E-value=1.6e+02 Score=25.07 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=27.9
Q ss_pred HHHhCCCCEEEEEcCCCCCh-------------------h---HHHHHHHHhCCCcee-ecccC
Q 030474 105 LKRLSPIMLVVLITPPPVDE-------------------D---GRMEYAKYVNSSPYI-NCFLG 145 (177)
Q Consensus 105 ~r~~~p~~~vil~tp~p~~~-------------------~---~~~~~~a~~~~vp~i-d~~l~ 145 (177)
+.+.-|++.||++.|+...- + .+-+.+|++++||.+ |.+|.
T Consensus 258 m~~~V~~AdVVItNPTH~AVAL~Yd~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPiven~pLA 321 (358)
T PRK13109 258 MLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLA 321 (358)
T ss_pred HhhcCCCCcEEEECCCceEEEeEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHHH
Confidence 34567899999999975311 1 123567889999999 54443
No 279
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=26.44 E-value=1.7e+02 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHH
Q 030474 93 EYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGR 127 (177)
Q Consensus 93 ~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~ 127 (177)
.|++...++.+.+++++|+.+|..-.-+|..+...
T Consensus 81 gYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~ 115 (226)
T KOG3286|consen 81 GYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRY 115 (226)
T ss_pred CcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHH
Confidence 37888889999999999999998887666554443
No 280
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=26.40 E-value=66 Score=28.10 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHH
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRME 129 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~ 129 (177)
|+-|+. .+.-+|+.+++++|+.++++.+.+|...+...+
T Consensus 58 SVGEv~-a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~ 96 (419)
T COG1519 58 SVGEVL-AALPLVRALRERFPDLRILVTTMTPTGAERAAA 96 (419)
T ss_pred chhHHH-HHHHHHHHHHHhCCCCCEEEEecCccHHHHHHH
Confidence 444444 456789999999999999999989888765433
No 281
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=26.09 E-value=1.7e+02 Score=21.14 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+.+.|-..++++|.-.. ...++|.+.|++.|...-++-|..
T Consensus 82 ~~S~~V~~f~~~~hFP~~--------~~v~~Yk~~L~~~I~~~v~~C~rs 123 (127)
T PF06309_consen 82 MKSPFVHQFIATHHFPHN--------SNVDEYKEQLKSWIRGNVSRCPRS 123 (127)
T ss_pred cCCCceeeecccccCCCc--------hHHHHHHHHHHHHHHHHHHhCCcC
Confidence 567899999999998754 478999999999999888887654
No 282
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.09 E-value=2.7e+02 Score=25.21 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCChh--HHHHHHHHhCCCceeeccc------CCCCCCCCCCCccceeeccc
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDED--GRMEYAKYVNSSPYINCFL------GRPPKYPQPIGKQQLFYHGG 164 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p~~~~--~~~~~~a~~~~vp~id~~l------~~~~~~l~~dG~~~~~~~~~ 164 (177)
+.+++.++.+.+. ..++|+++---.... ....+.+++.++|.+.+.. .+++-++...| +|+.
T Consensus 188 ~~i~~aa~~L~~A--krPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g-----~~g~ 257 (550)
T COG0028 188 EAIRKAAELLAEA--KRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLG-----MHGT 257 (550)
T ss_pred HHHHHHHHHHHhC--CCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCcccccccc-----cccc
Confidence 6777777877766 455888876554433 4456778999999995333 34556666666 7776
No 283
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=25.95 E-value=1.7e+02 Score=24.12 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.++++ ++++|+..|.. .+...+.++++.++..+
T Consensus 238 ~~~l~~l~~~ik~~--~v~~If~e~~~--~~~~~~~la~e~g~~v~ 279 (311)
T PRK09545 238 AQRLHEIRTQLVEQ--KATCVFAEPQF--RPAVIESVAKGTSVRMG 279 (311)
T ss_pred HHHHHHHHHHHHHc--CCCEEEecCCC--ChHHHHHHHHhcCCeEE
Confidence 67889999999998 79999998654 23456677888887765
No 284
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=25.93 E-value=1.9e+02 Score=21.53 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|.+++++-.+|.. +.+.. ++..++.+++..++++++|++
T Consensus 71 ~~a~~~ilvyd~~~~~-----------Sf~~~---~~~w~~~i~~~~~~~piilvg 112 (176)
T cd04133 71 RGADVFVLAFSLISRA-----------SYENV---LKKWVPELRHYAPNVPIVLVG 112 (176)
T ss_pred CCCcEEEEEEEcCCHH-----------HHHHH---HHHHHHHHHHhCCCCCEEEEE
Confidence 4568899988877643 22222 245556666555678888887
No 285
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=25.84 E-value=1.1e+02 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|+++++|-.......+.+++..++++++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 47888888888887788888888888874
No 286
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=25.82 E-value=2.3e+02 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+++.++++.+|++ ++++|.+|..+
T Consensus 123 ~~v~~a~~~Ak~~--G~~vI~IT~~~ 146 (196)
T PRK10886 123 RDIVKAVEAAVTR--DMTIVALTGYD 146 (196)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCC
Confidence 5677777888887 67888877654
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=25.59 E-value=1.2e+02 Score=22.47 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+|++++|+........+.+++..++|++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 6899999999998888889988888877
No 288
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.55 E-value=2.2e+02 Score=24.97 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=44.5
Q ss_pred CcEEEcccCCcc--hhhHHHhhccc-C-CCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC
Q 030474 34 ADVLLRGYGGYN--TRWALFLLHHI-F-PLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (177)
Q Consensus 34 ~~v~N~G~~G~t--s~~~l~~l~~~-~-~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~ 109 (177)
+.+...|..=+. |..+...|... . ......++|+||| |=|..-. ...++.++.+..+ ..+++.+
T Consensus 23 ~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~ii----NTC~v~~-------~a~~~~~~~i~~~-~~~k~~~ 90 (459)
T PRK14338 23 YYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVL----NSCSVRA-------SAEERILGKLGEL-QRLKRQR 90 (459)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEE----eccceee-------HHHHHHHHHHHHH-HHHHhhC
Confidence 667777776433 33333444321 1 1112456899999 5444321 1334445555544 6678888
Q ss_pred CCCEEEEEcCCCCC
Q 030474 110 PIMLVVLITPPPVD 123 (177)
Q Consensus 110 p~~~vil~tp~p~~ 123 (177)
|+++|++.++.+-.
T Consensus 91 p~~~ivv~GC~a~~ 104 (459)
T PRK14338 91 PDTRIVLWGCMVGP 104 (459)
T ss_pred CCCEEEEeCCcccc
Confidence 99999999987643
No 289
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=25.41 E-value=2e+02 Score=23.97 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+||+..|...-......+-.+..-..+-.+-++++++.+.+..|++.+|+.+-
T Consensus 73 ~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 73 AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 467999998886431100000000000112223447777888888888887777763
No 290
>PRK06298 type III secretion system protein; Validated
Probab=25.40 E-value=1.8e+02 Score=24.76 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=32.7
Q ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCCCCC------h----------------hHHHHHHHHhCCCcee-ecccC
Q 030474 94 YGDNLKIMVQ-HLKRLSPIMLVVLITPPPVD------E----------------DGRMEYAKYVNSSPYI-NCFLG 145 (177)
Q Consensus 94 ~~~nl~~ii~-~~r~~~p~~~vil~tp~p~~------~----------------~~~~~~~a~~~~vp~i-d~~l~ 145 (177)
.++-.+++.. +..+.-|++.||++.|+... + ..+-+.+|++++||.+ |.+|.
T Consensus 238 rR~~~re~~~~~m~~~V~~AdVVItNPTH~AVALkYd~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~VPiven~pLA 313 (356)
T PRK06298 238 RRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLA 313 (356)
T ss_pred HHHHHHHHHHhHHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHH
Confidence 3333444444 44556789999999997531 1 0123567889999999 44443
No 291
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=25.35 E-value=1.9e+02 Score=20.56 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=25.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|.+++.+-..|.. ..++++..++.+++..++.+++++.
T Consensus 71 ~~~d~~i~v~d~~~~~---------------s~~~~~~~~~~i~~~~~~~p~ivv~ 111 (161)
T cd04124 71 HKAHACILVFDVTRKI---------------TYKNLSKWYEELREYRPEIPCIVVA 111 (161)
T ss_pred CCCCEEEEEEECCCHH---------------HHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4678888888544321 2344566667776665566666654
No 292
>PRK00279 adk adenylate kinase; Reviewed
Probab=25.09 E-value=1.3e+02 Score=23.01 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|++++||........+.+++..++++++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58899999899888888888888888884
No 293
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.03 E-value=2.3e+02 Score=24.58 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=30.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
..+|+|+| |=+.... ...++.++.++. +..+|+.+|+++||+.++.+.
T Consensus 39 ~~aDvvii----nTC~v~~-------~a~~~~~~~i~~-~~~~k~~~p~~~vvvgGc~as 86 (444)
T PRK14325 39 EEADLILL----NTCSIRE-------KAQEKVFSELGR-WRKLKEKNPDLIIGVGGCVAQ 86 (444)
T ss_pred CCCCEEEE----Ecceeee-------hHHHHHHHHHHH-HHHHHHhCCCCEEEEECchhc
Confidence 56799999 3333211 122344444443 466788889999999998654
No 294
>PRK07475 hypothetical protein; Provisional
Probab=25.02 E-value=3.5e+02 Score=21.45 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+.++..+.+.++++.+.++.|++..|+++-+.+.. ..+.+.+..+.|.+|
T Consensus 175 d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~--~~~~le~~~glPViD 224 (245)
T PRK07475 175 DNEAAEQEVVAAARALLERHPDIGAIVLECTNMPP--YAAAIQRATGLPVFD 224 (245)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHH--HHHHHHHhcCCCEEe
Confidence 45555677777888877656788888888766643 223445557889997
No 295
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.92 E-value=2.7e+02 Score=20.74 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCChhH
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDEDG 126 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~ 126 (177)
+.++++.+.+++++|+.+|+-...+++.++.
T Consensus 57 ~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~ 87 (171)
T cd06533 57 EVLEKAAERLRARYPGLKIVGYHHGYFGPEE 87 (171)
T ss_pred HHHHHHHHHHHHHCCCcEEEEecCCCCChhh
Confidence 4566777889999999999887777776543
No 296
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=24.86 E-value=41 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCCC
Q 030474 100 IMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p 121 (177)
..|.++|+..|.+.||++++-.
T Consensus 69 ~aI~~lrkIHPPAHIiVis~~~ 90 (107)
T PF04009_consen 69 KAIDRLRKIHPPAHIIVISPRH 90 (107)
T ss_pred hHHHHHhhcCCCceEEEECCCc
Confidence 4578899999999999998653
No 297
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=24.83 E-value=1.9e+02 Score=21.31 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=25.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
...|.+++.+-.+|.. + .++++.+++.++...++.+++++.
T Consensus 72 ~~~d~iilv~d~~~~~-----------s----~~~~~~~~~~i~~~~~~~piilv~ 112 (193)
T cd04118 72 RGAKAAIVCYDLTDSS-----------S----FERAKFWVKELQNLEEHCKIYLCG 112 (193)
T ss_pred CCCCEEEEEEECCCHH-----------H----HHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4678999988665532 2 233455666666555566776665
No 298
>PLN02444 HMP-P synthase
Probab=24.80 E-value=2.1e+02 Score=26.18 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred EEEEeccccccccCCCCCCccCCHHHH--HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHh----CCCceee
Q 030474 68 TTIFFGANDAALFGRTSERQHVPVEEY--GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYV----NSSPYIN 141 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~~~~~~~~~~~~~--~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~----~~vp~id 141 (177)
|++++| |..+.+ ....-.+..++ ...+.++.++++++ +++|++=+|-.+.-......+... +++||.-
T Consensus 375 VtlSLG--DGLRPG--~iaDA~D~AQ~~EL~tLGELtkrA~e~--gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYv 448 (642)
T PLN02444 375 IALSIG--DGLRPG--SIYDANDTAQFAELLTQGELTRRAWEK--DVQVMNEGPGHVPLHKIPENMQKQLEWCNEAPFYT 448 (642)
T ss_pred eeeecc--CCcCCC--ccccCCcHHHHHHHHHHHHHHHHHHHc--CCeEEEECCCcCcHHHHHHHHHHHHHhhCCCCcee
Q ss_pred ------cccCCCCCCCCCCCccceeecccchhhh
Q 030474 142 ------CFLGRPPKYPQPIGKQQLFYHGGCSICY 169 (177)
Q Consensus 142 ------~~l~~~~~~l~~dG~~~~~~~~~~~~~~ 169 (177)
+.-..+.-.-++-|-...-++|.+-+||
T Consensus 449 LGPLvTDIAPGYDHItsAIGaAiaa~~GadfLCY 482 (642)
T PLN02444 449 LGPLTTDIAPGYDHITSAIGAANIGALGTALLCY 482 (642)
T ss_pred cCCcccccCCCchHHHHHHHHHHHHHcCCCeEEe
No 299
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=24.67 E-value=1.3e+02 Score=22.42 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcC
Q 030474 97 NLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 97 nl~~ii~~~r~~~p~~~vil~tp 119 (177)
..+ +++.+++..|++++|-++.
T Consensus 16 ~~~-i~~~l~~~~p~~~iiG~st 37 (198)
T PF08495_consen 16 EAK-ILEALRERLPDAPIIGCST 37 (198)
T ss_pred hHH-HHHHHHHHCCCCcEEEEcc
Confidence 344 7788888888888888764
No 300
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=24.63 E-value=2e+02 Score=25.09 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh--------HHHHHHHHhCCCcee
Q 030474 87 QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED--------GRMEYAKYVNSSPYI 140 (177)
Q Consensus 87 ~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~--------~~~~~~a~~~~vp~i 140 (177)
-++|..++..|++-.=+..+ +++..+++|.+.+-. .....++..+++.|+
T Consensus 265 GHvPl~~I~~nv~lqK~lc~----~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdfL 322 (423)
T TIGR00190 265 GHVPLDQIEANVRLQKELCD----EAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGADFL 322 (423)
T ss_pred CCCcHHHHHHHHHHHHHhhC----CCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeE
Confidence 36899999999876533333 678999999887642 345566777888877
No 301
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.52 E-value=2.6e+02 Score=25.78 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 89 VPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+..+..++=..+++++|.- .|=+.+++-+||........+.+|.....|||
T Consensus 514 ~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFv 567 (744)
T KOG0741|consen 514 PPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFV 567 (744)
T ss_pred ccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeE
Confidence 35677777778888888863 55566788889999999999999999999998
No 302
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=24.49 E-value=1.7e+02 Score=22.62 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=24.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
.+||+|++-+..-|.. --++++.+++..|.++||+++..
T Consensus 48 ~~~DlvilD~~~p~~~-------------------G~eli~~l~~~~~~~~vI~ls~~ 86 (239)
T PRK10430 48 TPIDLILLDIYMQQEN-------------------GLDLLPVLHEAGCKSDVIVISSA 86 (239)
T ss_pred CCCCEEEEecCCCCCC-------------------cHHHHHHHHhhCCCCCEEEEECC
Confidence 5689999844433211 11345666667778889988754
No 303
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=24.38 E-value=2.4e+02 Score=23.56 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=29.1
Q ss_pred EEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC-CEEEEE
Q 030474 67 ATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI-MLVVLI 117 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~-~~vil~ 117 (177)
.+||.+|+|=....+ ...+.+.-.++++.-.+.+.....+ -++++.
T Consensus 2 ~iVvALGGNAll~~g-----~~~tae~Q~~~v~~ta~~i~~l~~~g~e~Vit 48 (312)
T COG0549 2 RIVVALGGNALLQRG-----EPLTAEAQYEAVKITAEQIADLIASGYEVVIT 48 (312)
T ss_pred eEEEEecchhhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 589999999887653 2346666677776666655554323 455554
No 304
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.33 E-value=2.3e+02 Score=24.78 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=28.9
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHH-HHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVE-EYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~-~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
....|+|+| |=|..- -+++ +.+..++. +.++++.+|+++|++.++.+-
T Consensus 41 ~~~ADviii----NTC~v~--------~~A~~k~~~~i~~-~~~~k~~~~~~~ivv~GC~a~ 89 (445)
T PRK14340 41 EEDADIVLL----NTCAVR--------ENAVERIGHYLQH-LKGAKRRRKGLLVGVLGCVPQ 89 (445)
T ss_pred cccCCEEEE----Eeeeee--------ccHHHHHHHHHHH-HHHHhhcCCCCEEEEeCcccc
Confidence 356899999 444432 1222 33333333 345777788888999887653
No 305
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=24.30 E-value=3.1e+02 Score=21.06 Aligned_cols=24 Identities=4% Similarity=-0.241 Sum_probs=13.8
Q ss_pred cchhhHHHhhcccCCCCCCCCCcEEEE
Q 030474 44 YNTRWALFLLHHIFPLDNSNPPVATTI 70 (177)
Q Consensus 44 ~ts~~~l~~l~~~~~~~~~~~pd~Vvi 70 (177)
.+...+.+++.+... ..++++|||
T Consensus 106 ~~~~~l~~~i~~~~~---~~~~~~vvI 129 (242)
T cd00984 106 LTVSDIRSRARRLKK---EHGLGLIVI 129 (242)
T ss_pred CCHHHHHHHHHHHHH---hcCCCEEEE
Confidence 344445555554433 357888888
No 306
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.21 E-value=1.8e+02 Score=22.86 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 94 ~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
..+.+.++++.+++. ++++|+..+.+... ..+.++++.+++.+.
T Consensus 184 s~~~l~~l~~~ik~~--~v~~i~~e~~~~~~--~~~~la~~~g~~vv~ 227 (256)
T PF01297_consen 184 SPKDLAELIKLIKEN--KVKCIFTEPQFSSK--LAEALAKETGVKVVY 227 (256)
T ss_dssp -HHHHHHHHHHHHHT--T-SEEEEETTS-TH--HHHHHHHCCT-EEEE
T ss_pred CHHHHHHHHHHhhhc--CCcEEEecCCCChH--HHHHHHHHcCCcEEE
Confidence 366788899999998 78899987654443 456778889988873
No 307
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=24.14 E-value=1.7e+02 Score=20.28 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 93 EYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 93 ~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+-.+....+++.+++++.+.+|.+++-.
T Consensus 49 ~~~~~~~~ll~~i~~~~~~iPVFl~~~~ 76 (115)
T PF03709_consen 49 EEEDEAQELLDKIRERNFGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHHHHHHHHSTT-EEEEEESC
T ss_pred ccchhHHHHHHHHHHhCCCCCEEEEecC
Confidence 3456778899999999999999998864
No 308
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.06 E-value=2.6e+02 Score=24.40 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=29.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
..+|+|+| |=|..-. ...++.++.+..+ .++++.+|+++|++.++.+
T Consensus 38 ~~ADiiii----NTC~v~~-------~A~~~~~~~i~~~-~~~k~~~p~~~ivv~GC~a 84 (446)
T PRK14337 38 EEARVFIV----NTCSVRD-------KPEQKVYSLLGRI-RHATKKNPDVFVAVGGCVA 84 (446)
T ss_pred CCCCEEEE----eccCeec-------HHHHHHHHHHHHH-HHHHHhCCCCEEEEECCcc
Confidence 46899999 4443211 1233444444443 4567788899999999875
No 309
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=24.01 E-value=1e+02 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
.....+.++.+|+.+|+++|||-|
T Consensus 19 ~~~t~~~l~siR~~~P~A~IILST 42 (311)
T PF07507_consen 19 PDITKNCLASIRKHFPGAEIILST 42 (311)
T ss_pred chhHHHHHHHHHHhCCCCEEEEEC
Confidence 344567788999999999999976
No 310
>PRK06217 hypothetical protein; Validated
Probab=23.93 E-value=1.5e+02 Score=21.97 Aligned_cols=29 Identities=3% Similarity=-0.125 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|++++++-..+....+.+++..++++++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~ 31 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLD 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEE
Confidence 58999999999998899999999999984
No 311
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=23.80 E-value=2.8e+02 Score=24.80 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceeec
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYINC 142 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id~ 142 (177)
.+||+|++++-.-+ .+++.. ..++..++ |+.-||=++.....+..+.....++.++.|||.
T Consensus 71 ~~~dvIi~~v~~~~-------------aV~~Vi---~gl~~~l~---~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda 131 (493)
T PLN02350 71 QKPRSVIILVKAGA-------------PVDQTI---KALSEYME---PGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM 131 (493)
T ss_pred CCCCEEEEECCCcH-------------HHHHHH---HHHHhhcC---CCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC
Confidence 35999999874222 222222 34444432 233344455444444444444555678999998
Q ss_pred ccCCCCCCCCCCCccceeecccc
Q 030474 143 FLGRPPKYPQPIGKQQLFYHGGC 165 (177)
Q Consensus 143 ~l~~~~~~l~~dG~~~~~~~~~~ 165 (177)
++...++ -...|. ..|-+|+
T Consensus 132 pVSGG~~-gA~~G~--~im~GG~ 151 (493)
T PLN02350 132 GVSGGEE-GARNGP--SLMPGGS 151 (493)
T ss_pred CCcCCHH-HhcCCC--eEEecCC
Confidence 8766655 555664 3455554
No 312
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=23.76 E-value=2.3e+02 Score=18.79 Aligned_cols=44 Identities=14% Similarity=0.315 Sum_probs=25.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
.+.|.+++.+=..|.. +. +...++.+-+..+++..+++++|+++
T Consensus 72 ~~~d~~ilv~D~s~~~-----------s~-~~~~~~~~~l~~~~~~~~~~piilv~ 115 (119)
T PF08477_consen 72 KKADAVILVYDLSDPE-----------SL-EYLSQLLKWLKNIRKRDKNIPIILVG 115 (119)
T ss_dssp HHSCEEEEEEECCGHH-----------HH-HHHHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred hcCcEEEEEEcCCChH-----------HH-HHHHHHHHHHHHHHccCCCCCEEEEE
Confidence 4568888877433321 12 22334455567777666678888875
No 313
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=23.69 E-value=1.4e+02 Score=20.99 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=24.6
Q ss_pred EEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 114 VVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 114 vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
|++++++........+.+++..+.++++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7889999999988888888888999985
No 314
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.46 E-value=97 Score=22.14 Aligned_cols=25 Identities=12% Similarity=0.404 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 97 NLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 97 nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
.-.+.|.++|+..|.+.||+++|-.
T Consensus 67 ~a~~aI~rIr~IHPPAHiIVIs~r~ 91 (125)
T COG1844 67 PASKAIGRIRKIHPPAHIIVISPRH 91 (125)
T ss_pred ccHHHHHHHHhcCCCceEEEeCCCc
Confidence 3345678899999999999998754
No 315
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=23.43 E-value=2.2e+02 Score=23.01 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=40.9
Q ss_pred cccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCC---CCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEE
Q 030474 39 RGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR---TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVV 115 (177)
Q Consensus 39 ~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~---~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vi 115 (177)
.|..+-...+..+.++-+.. .+||.+++-. ..+.. .+..++.++++ ..++++.+|+.+|+ +|+
T Consensus 158 iGL~~gki~~e~kaIdiL~~----~~~DalVl~v-----liPtpGtkm~~~~pp~~eE----~i~v~~~AR~~f~~-pv~ 223 (275)
T COG1856 158 IGLDFGKIHGEFKAIDILVN----YEPDALVLVV-----LIPTPGTKMGNSPPPPVEE----AIKVVKYARKKFPN-PVS 223 (275)
T ss_pred EEeccCcccchHHHHHHHhc----CCCCeEEEEE-----EecCCchhccCCCCcCHHH----HHHHHHHHHHhCCC-Cee
Confidence 56664444555555544433 7788887732 22110 01112334444 34567889999998 666
Q ss_pred EEcCCCCChh
Q 030474 116 LITPPPVDED 125 (177)
Q Consensus 116 l~tp~p~~~~ 125 (177)
+=..-|..+.
T Consensus 224 iGCmrP~Ge~ 233 (275)
T COG1856 224 IGCMRPRGEW 233 (275)
T ss_pred EeecCcCchh
Confidence 6556677764
No 316
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=23.29 E-value=2e+02 Score=24.40 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=27.9
Q ss_pred HHHhCCCCEEEEEcCCCCC------h----------------hHHHHHHHHhCCCcee-ecccC
Q 030474 105 LKRLSPIMLVVLITPPPVD------E----------------DGRMEYAKYVNSSPYI-NCFLG 145 (177)
Q Consensus 105 ~r~~~p~~~vil~tp~p~~------~----------------~~~~~~~a~~~~vp~i-d~~l~ 145 (177)
..+.-|++.||++.|+... + ..+-+.+|++++||-+ |.+|.
T Consensus 249 m~~~V~~AdVVItNPTH~AVAL~Yd~~~~~aP~VvAKG~d~~A~~Ir~iA~e~~VPiven~pLA 312 (349)
T PRK12721 249 LANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLA 312 (349)
T ss_pred hhccCCCCcEEEEcCCceEEEEEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHHH
Confidence 3455789999999997431 1 0134567889999999 54443
No 317
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=23.26 E-value=47 Score=26.94 Aligned_cols=14 Identities=29% Similarity=1.032 Sum_probs=12.3
Q ss_pred CCceEEEEecccCc
Q 030474 1 MRPQIVLFGDSITQ 14 (177)
Q Consensus 1 ~~~~I~~~GDSit~ 14 (177)
|+|-|+||||++-.
T Consensus 221 lKpdV~fFGdnvn~ 234 (305)
T KOG2683|consen 221 LKPDVTFFGDNVNK 234 (305)
T ss_pred cCCceEEecCCCCh
Confidence 68899999999875
No 318
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=23.26 E-value=2.1e+02 Score=20.83 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCh------hHHHHHHHHhCCCcee
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPVDE------DGRMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~~~------~~~~~~~a~~~~vp~i 140 (177)
++++.++.. .+..|+.+|-|... ....++.|-++++|++
T Consensus 66 ~i~~~I~~g--~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~ 110 (142)
T PRK05234 66 QIGALIAEG--KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVA 110 (142)
T ss_pred hHHHHHHcC--ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEE
Confidence 466777765 67788887744322 2245677888999998
No 319
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.20 E-value=1.4e+02 Score=20.45 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 96 ~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..+.++++.+|++ +++||.+|..+-.+
T Consensus 61 ~~~~~~~~~a~~~--g~~vi~iT~~~~s~ 87 (128)
T cd05014 61 DELLNLLPHLKRR--GAPIIAITGNPNST 87 (128)
T ss_pred HHHHHHHHHHHHC--CCeEEEEeCCCCCc
Confidence 4566778888988 79999999766544
No 320
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=23.14 E-value=3.4e+02 Score=23.92 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHh--------CCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 90 PVEEYGDNLKIMVQHLKRL--------SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~--------~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
..++.++.++++++.++.. .+..-++|.+||-..+....+.++.+.++||+
T Consensus 59 g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~ 117 (495)
T TIGR01241 59 GIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF 117 (495)
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 3455666677777755421 12234899999998887766666666666655
No 321
>PRK02947 hypothetical protein; Provisional
Probab=22.98 E-value=99 Score=24.65 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
-..+.++++.++++ ++++|.+|..+
T Consensus 119 t~~~i~~~~~a~~~--g~~vI~iT~~~ 143 (246)
T PRK02947 119 NPVPIEMALEAKER--GAKVIAVTSLA 143 (246)
T ss_pred CHHHHHHHHHHHHC--CCEEEEEcCCc
Confidence 44567778888888 68888888655
No 322
>CHL00176 ftsH cell division protein; Validated
Probab=22.89 E-value=2.7e+02 Score=25.73 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHHhC--------CCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 90 PVEEYGDNLKIMVQHLKRLS--------PIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~--------p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
..++..+.++++++.++... +...|+|.+||-.......+.+|.+.++||+
T Consensus 187 G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i 245 (638)
T CHL00176 187 GIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF 245 (638)
T ss_pred ChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 35677788888887766431 1235899999999988777777777777776
No 323
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=22.88 E-value=1e+02 Score=29.15 Aligned_cols=51 Identities=12% Similarity=-0.022 Sum_probs=32.9
Q ss_pred EEEEEeccccccccC-C---CC----CCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 67 ATTIFFGANDAALFG-R---TS----ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~~-~---~~----~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
+=+|++|+||..... . .+ .........+.+-++.+++.+++. +.++-+++-
T Consensus 685 vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~--g~~vgicge 743 (782)
T TIGR01418 685 FDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEH--GKKVGICGQ 743 (782)
T ss_pred CCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhc--CCeEEEeCC
Confidence 336788999998521 1 11 011123467888999999999987 556666653
No 324
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=22.73 E-value=2.5e+02 Score=18.97 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 93 EYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 93 ~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
.+..-++.++++++++.|++++++++..|
T Consensus 16 ~~~~li~~~~~~l~~~~p~~~l~i~G~~~ 44 (135)
T PF13692_consen 16 GLEELIEAALERLKEKHPDIELIIIGNGP 44 (135)
T ss_dssp THHHHHH-HHHHHHHHSTTEEEEEECESS
T ss_pred cccchhhhHHHHHHHHCcCEEEEEEeCCH
Confidence 34444454778888888999999998744
No 325
>PRK13808 adenylate kinase; Provisional
Probab=22.71 E-value=1.3e+02 Score=25.40 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+|||++||..........+++.+++++|+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 68999999999988888888889988884
No 326
>PHA02244 ATPase-like protein
Probab=22.68 E-value=3.7e+02 Score=23.30 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 91 VEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
...+..+...+.+.++.. .+|+|.+|+-.......+.++...+.||+
T Consensus 102 sp~~~~~~~ri~r~l~~~---~PVLL~GppGtGKTtLA~aLA~~lg~pfv 148 (383)
T PHA02244 102 NPTFHYETADIAKIVNAN---IPVFLKGGAGSGKNHIAEQIAEALDLDFY 148 (383)
T ss_pred CHHHHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344555666665555544 56999999999999888888888888887
No 327
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=22.54 E-value=1.9e+02 Score=26.62 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHhCCCCEEEEEcCCCCC------h----------------hHHHHHHHHhCCCcee-eccc
Q 030474 105 LKRLSPIMLVVLITPPPVD------E----------------DGRMEYAKYVNSSPYI-NCFL 144 (177)
Q Consensus 105 ~r~~~p~~~vil~tp~p~~------~----------------~~~~~~~a~~~~vp~i-d~~l 144 (177)
..+.-|++.||++.|+... + ..+-++.|++++||-+ |.+|
T Consensus 512 m~~~V~~AdvVitNPTH~AVAL~Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~VPive~~~L 574 (609)
T PRK12772 512 MMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPL 574 (609)
T ss_pred hhccCCCCcEEEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHHHHHHHHHHCCCcEEeCHHH
Confidence 3455789999999997531 1 0134667899999999 4444
No 328
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=22.52 E-value=2e+02 Score=22.64 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+||+|+.+.| |. +..+. -+-++.+|+..|+.+|=++.
T Consensus 32 g~ePDVVlA~aG--d~------------pT~E~----lAA~~lLr~~~P~lkiRvVN 70 (203)
T PF09363_consen 32 GEEPDVVLACAG--DV------------PTLEV----LAAASLLREHFPELKIRVVN 70 (203)
T ss_dssp TTT-SEEEEEES--HH------------HHHHH----HHHHHHHHHT--T--EEEEE
T ss_pred CCCCCEEEEecC--ch------------hhHHH----HHHHHHHHHhccCceEEEEE
Confidence 468999999999 32 22222 23457888888888886655
No 329
>PRK11409 antitoxin YefM; Provisional
Probab=22.47 E-value=1.5e+02 Score=19.45 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
++..++++|+.++++++... +.+|++..
T Consensus 4 i~~s~~R~~l~~~l~~v~~~--~epv~ITr 31 (83)
T PRK11409 4 ISYSEARQNLSATMMKAVED--HAPILITR 31 (83)
T ss_pred EcHHHHHHHHHHHHHHHhcc--CCcEEEEe
Confidence 57889999999999999876 34455543
No 330
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=1.2e+02 Score=22.05 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 030474 92 EEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+|.+|+++|+.++++. |++
T Consensus 23 ~~FveN~d~I~~rL~~g-e~i 42 (135)
T COG3543 23 PAFVENYDAIAERLKAG-EDI 42 (135)
T ss_pred HHHHHHHHHHHHHhhcC-CCe
Confidence 46999999999999965 453
No 331
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=22.42 E-value=2.3e+02 Score=20.26 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=34.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHh-CCCCEEEEEcC-C------CCChhHHHHHHHHh
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRL-SPIMLVVLITP-P------PVDEDGRMEYAKYV 134 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~-~p~~~vil~tp-~------p~~~~~~~~~~a~~ 134 (177)
...|.+++++-.+|.. ..+++..++..+++. .|+.+++++.- . .+.. ...+..+..
T Consensus 75 ~~~d~il~v~d~~~~~---------------s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~~ 138 (168)
T cd01866 75 RGAAGALLVYDITRRE---------------TFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSY-EEGEAFAKE 138 (168)
T ss_pred ccCCEEEEEEECCCHH---------------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH-HHHHHHHHH
Confidence 4678999988877532 233455666666553 35677777652 1 1111 122334455
Q ss_pred CCCceee
Q 030474 135 NSSPYIN 141 (177)
Q Consensus 135 ~~vp~id 141 (177)
.+++++.
T Consensus 139 ~~~~~~e 145 (168)
T cd01866 139 HGLIFME 145 (168)
T ss_pred cCCEEEE
Confidence 6777763
No 332
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=22.40 E-value=1.1e+02 Score=29.05 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=32.0
Q ss_pred EEEEEecccccccc-C---CCCC----CccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 67 ATTIFFGANDAALF-G---RTSE----RQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~-~---~~~~----~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
+=+|++|+||.... . +.+. .....-..+.+-++.+++.++++ +.++-+++
T Consensus 692 vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~--g~~vgicg 749 (795)
T PRK06464 692 FDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKA--GKYVGICG 749 (795)
T ss_pred CCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHc--CCEEEEcC
Confidence 33578899999842 1 1110 11122357888999999999988 55666665
No 333
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=22.39 E-value=1.2e+02 Score=26.33 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh--------HHHHHHHHhCCCcee
Q 030474 87 QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED--------GRMEYAKYVNSSPYI 140 (177)
Q Consensus 87 ~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~--------~~~~~~a~~~~vp~i 140 (177)
-+++..++..|++..-+... ++++.+++|.+.+-. .....++..+++.|+
T Consensus 266 GHvpl~~I~~nv~l~k~~c~----~aPfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~L 323 (432)
T COG0422 266 GHVPLNEIEANVKLQKELCD----GAPFYVLGPLVTDIAPGYDHITSAIGAAMAAWAGADML 323 (432)
T ss_pred CcCcHHHHHHHHHHHHHhcC----CCCeeeeCCcccccCCCchHHHHHHHHHHHHhccCceE
Confidence 36899999999988866665 678999999886532 233444555666665
No 334
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=22.35 E-value=1.2e+02 Score=21.77 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..+.|...+.+.+++.+....--++||+.||.+--
T Consensus 70 ~~~~Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~LG 104 (138)
T PF10116_consen 70 EEERFAREVADRLEKARRAGKFDRLVLVAPPRFLG 104 (138)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHH
Confidence 45778888888899888887667899999887543
No 335
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=22.25 E-value=1.9e+02 Score=24.66 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChh---HHHHHHHHhCCCceee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDED---GRMEYAKYVNSSPYIN 141 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~---~~~~~~a~~~~vp~id 141 (177)
.+....+++.+|+. ++.|++. -.|+..+ +..+++|-+.+++|+|
T Consensus 109 ~~~~~dv~~~lk~~--~~dVlvn-ylPvGs~~A~~~YA~AAl~aG~afVN 155 (351)
T TIGR03450 109 DAEPVDVVQALKDA--KVDVLVS-YLPVGSEEADKFYAQCAIDAGVAFVN 155 (351)
T ss_pred ccCHHHHHHHHHhc--CCCEEEE-CCccchHHHHHHHHHHHHHcCCceEe
Confidence 33345688888877 4666655 5566544 3456667789999997
No 336
>PLN02511 hydrolase
Probab=22.23 E-value=1.8e+02 Score=24.63 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+.+.+.++++.++.++|+.++++++
T Consensus 153 ~~~~~Dl~~~i~~l~~~~~~~~~~lvG 179 (388)
T PLN02511 153 ASFTGDLRQVVDHVAGRYPSANLYAAG 179 (388)
T ss_pred CCchHHHHHHHHHHHHHCCCCCEEEEE
Confidence 355667788888888776665565554
No 337
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=21.98 E-value=57 Score=20.53 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=8.9
Q ss_pred ceEEEEecccC
Q 030474 3 PQIVLFGDSIT 13 (177)
Q Consensus 3 ~~I~~~GDSit 13 (177)
.+++++|||+.
T Consensus 22 ~~~~~VGD~~~ 32 (75)
T PF13242_consen 22 SRCVMVGDSLE 32 (75)
T ss_dssp GGEEEEESSTT
T ss_pred HHEEEEcCCcH
Confidence 47899999944
No 338
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.97 E-value=1.9e+02 Score=23.48 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh-hHHHHHHHHhCCCcee---ecccCCCCCCCCCCC
Q 030474 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE-DGRMEYAKYVNSSPYI---NCFLGRPPKYPQPIG 155 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~-~~~~~~~a~~~~vp~i---d~~l~~~~~~l~~dG 155 (177)
..+++..+-...+++... |+ -+|+++|.|..+ +...+..-.+.++|.| |.+-+...+.|.+.|
T Consensus 43 m~pe~~~~~~~~~~~~~~---pD-f~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g 109 (277)
T PRK00994 43 MGPEEVEEVVKKMLEEWK---PD-FVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQG 109 (277)
T ss_pred CCHHHHHHHHHHHHHhhC---CC-EEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcC
Confidence 456666655555544333 32 367788877544 3333444445667776 444444445555444
No 339
>PRK09411 carbamate kinase; Reviewed
Probab=21.90 E-value=2.2e+02 Score=23.76 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=21.5
Q ss_pred EEEEEeccccccccCCCCCCccCCHH----HHHHHHHHHHHHHHH
Q 030474 67 ATTIFFGANDAALFGRTSERQHVPVE----EYGDNLKIMVQHLKR 107 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~~~~~~~~~~~~~----~~~~nl~~ii~~~r~ 107 (177)
.+||++|+|-....+. ..+.+ ..+...+.|.+.+++
T Consensus 3 ~iVvAlGGNAl~~~g~-----~~~~~~q~~~v~~~a~~ia~l~~~ 42 (297)
T PRK09411 3 TLVVALGGNALLQRGE-----ALTAENQYRNIASAVPALARLARS 42 (297)
T ss_pred eEEEEcCchhhcCCCC-----CcCHHHHHHHHHHHHHHHHHHHHc
Confidence 6899999999876431 12333 334445555555554
No 340
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=21.88 E-value=2.2e+02 Score=20.81 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=24.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
..||+|++.+...|. +. ..+++.+++..|..++|+++..+
T Consensus 43 ~~~dlvild~~l~~~------------~g-------~~~~~~i~~~~~~~~ii~lt~~~ 82 (219)
T PRK10336 43 APYDAVILDLTLPGM------------DG-------RDILREWREKGQREPVLILTARD 82 (219)
T ss_pred CCCCEEEEECCCCCC------------CH-------HHHHHHHHhcCCCCcEEEEECCC
Confidence 568999995543321 11 13445566666778888888544
No 341
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=21.70 E-value=1.3e+02 Score=24.42 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=45.3
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcccCcEEE----------cccCCcchhhHHHhhcccCCCCCCCCCcEEEEEec
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLL----------RGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG 73 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N----------~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G 73 (177)
.|+++|.-.+- .-+...++.+.++++++. .+++|-+.-+.. ..+..+- .-.+|+.|++-..
T Consensus 32 ~iiaiGGGvv~------Dl~GFaAs~y~RGi~~i~vPTTLLa~vDssiGgK~~vN~~-~~KN~iG--~f~~P~~V~iD~~ 102 (260)
T PF01761_consen 32 LIIAIGGGVVG------DLAGFAASTYMRGIPFIQVPTTLLAQVDSSIGGKTGVNFP-GGKNLIG--TFYQPEAVLIDPS 102 (260)
T ss_dssp EEEEEESHHHH------HHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEET-TEEEEEE--EE---SEEEEEGG
T ss_pred eEEEECChHHH------HHHHHHHHHHccCCceEeccccHHHHHhcccCCCeeeeCC-CCCCccc--ccCCCceeEEcHH
Confidence 45666655542 344556666667777765 456655443221 1122221 1367999999444
Q ss_pred cccccccCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 030474 74 ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 74 ~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~ 108 (177)
.=. ..+.++++..+.++++.+--.
T Consensus 103 ~l~-----------tL~~~e~~~G~aEiiK~a~i~ 126 (260)
T PF01761_consen 103 FLK-----------TLPPREIRSGLAEIIKYALIA 126 (260)
T ss_dssp GGG-----------GS-HHHHHHHHHHHHHHHHHT
T ss_pred HHh-----------hccHHHHHhCHHHHHHHHHHC
Confidence 322 368899999999999876543
No 342
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.70 E-value=1.6e+02 Score=25.67 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=27.4
Q ss_pred HHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 030474 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVL 116 (177)
Q Consensus 49 ~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil 116 (177)
-+++.+.++. ...|+|+| |+.... -+.+.++++.+|+++|+..|++
T Consensus 154 ~~~~v~~lv~----aGvDvI~i-----D~a~g~-------------~~~~~~~v~~ik~~~p~~~vi~ 199 (404)
T PRK06843 154 TIERVEELVK----AHVDILVI-----DSAHGH-------------STRIIELVKKIKTKYPNLDLIA 199 (404)
T ss_pred HHHHHHHHHh----cCCCEEEE-----ECCCCC-------------ChhHHHHHHHHHhhCCCCcEEE
Confidence 3456666654 67899888 665431 2345566666677666655433
No 343
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=21.50 E-value=89 Score=21.53 Aligned_cols=39 Identities=21% Similarity=0.099 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCC-----hhHHHHHHHHhCCCcee
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPVD-----EDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~~-----~~~~~~~~a~~~~vp~i 140 (177)
.+++.+++. ...+|+-+|..-. +..+.++.|-+.++|++
T Consensus 62 ~i~~~i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 62 SLRELLAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hHHHHHHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 355556654 6778887765422 23445677888999998
No 344
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.37 E-value=3e+02 Score=21.53 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=31.2
Q ss_pred ccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHH
Q 030474 73 GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRME 129 (177)
Q Consensus 73 G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~ 129 (177)
..+|..... ..+.+.+...+++++..++++ +.-|.+..|.|..-+...+
T Consensus 145 ~~rdvfLD~------~~~~~~I~~ql~~~~~~A~~~--G~aI~Igh~~p~Tl~~L~~ 193 (213)
T PF04748_consen 145 ARRDVFLDN------DQDEAAIRRQLDQAARIARKQ--GSAIAIGHPRPETLEALEE 193 (213)
T ss_dssp EE-SEETTS------T-SHHHHHHHHHHHHHHHHCC--SEEEEEEE-SCCHHHHHHH
T ss_pred EeeceecCC------CCCHHHHHHHHHHHHHhhhhc--CcEEEEEcCCHHHHHHHHH
Confidence 345555543 258899999999999999987 3445555566765444333
No 345
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.35 E-value=2.6e+02 Score=22.30 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.+.+.++++.+++. +++.|+..+..-. ...+.++++.+++.+.
T Consensus 203 ~~~l~~l~~~ik~~--~v~~if~e~~~~~--~~~~~la~~~g~~v~~ 245 (266)
T cd01018 203 PADLKRLIDLAKEK--GVRVVFVQPQFST--KSAEAIAREIGAKVVT 245 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcCCCCc--HHHHHHHHHcCCeEEE
Confidence 56788899999988 7889999865433 3455788888988763
No 346
>PLN02356 phosphateglycerate kinase
Probab=21.14 E-value=2e+02 Score=25.21 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
.++|.||+.+|+= ..+.-+-..+|+.+|+++|+.+.|.
T Consensus 249 g~~D~vVv~vGtG--------------------Gti~Gva~~lK~~~P~vkVigVep~ 286 (423)
T PLN02356 249 GNLDAFVAAAGTG--------------------GTLAGVSRFLQEKNPNIKCFLIDPP 286 (423)
T ss_pred CCCCEEEeCCCch--------------------HHHHHHHHHHHHhCCCCEEEEEecC
Confidence 3689999988862 2334455667777899999999874
No 347
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=21.14 E-value=2.2e+02 Score=24.14 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=27.0
Q ss_pred HHHhCCCCEEEEEcCCCCC------h----------------hHHHHHHHHhCCCcee-eccc
Q 030474 105 LKRLSPIMLVVLITPPPVD------E----------------DGRMEYAKYVNSSPYI-NCFL 144 (177)
Q Consensus 105 ~r~~~p~~~vil~tp~p~~------~----------------~~~~~~~a~~~~vp~i-d~~l 144 (177)
..+.-|.+.||++.|+... + ..+-+.+|++++||.+ |.+|
T Consensus 248 m~~~V~~AdVVitNPTH~AVAL~Yd~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~VPiven~pL 310 (342)
T TIGR01404 248 LKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPL 310 (342)
T ss_pred hhccCCCCcEEEECCceeEEEeEECCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCCEeeCHHH
Confidence 3345789999999987431 1 0133567889999999 4444
No 348
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=20.93 E-value=1.8e+02 Score=20.55 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCC--CCChhHHHHHHHHhCCCceee
Q 030474 93 EYGDNLKIMVQHLKRLSPIMLVVLITPP--PVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 93 ~~~~nl~~ii~~~r~~~p~~~vil~tp~--p~~~~~~~~~~a~~~~vp~id 141 (177)
.+...+.+.+..+++. .++.|+++-. |..-.......++++++||+.
T Consensus 27 ki~~G~~e~~Kai~~g--~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~ 75 (116)
T COG1358 27 KLKKGTNEVTKAIERG--KAKLVVIAEDVSPEELVKHLPALCEEKNVPYVY 75 (116)
T ss_pred CchhhHHHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3455566666667665 6777777632 222223445668889999984
No 349
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.93 E-value=2.3e+02 Score=19.88 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCh--hHHHHHHHHhCCCceee
Q 030474 98 LKIMVQHLKRLSPIMLVVLITPPPVDE--DGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp~p~~~--~~~~~~~a~~~~vp~id 141 (177)
+.+.++.++.. .++.|+++.---.. -......+++++|||+.
T Consensus 31 ~~~v~kaikkg--ka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~ 74 (117)
T TIGR03677 31 TNEVTKAVERG--IAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVY 74 (117)
T ss_pred HHHHHHHHHcC--CccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 44555555554 57777776432222 23456678889999984
No 350
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=20.89 E-value=1.8e+02 Score=21.07 Aligned_cols=29 Identities=3% Similarity=-0.047 Sum_probs=25.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.|++++++-.......+.+++..+.+|+|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47888888899988888999988999996
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=20.83 E-value=2e+02 Score=26.08 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC----CCh--hHH------HHHHHHhCCCceee--cccC--CCCCCCCC
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP----VDE--DGR------MEYAKYVNSSPYIN--CFLG--RPPKYPQP 153 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p----~~~--~~~------~~~~a~~~~vp~id--~~l~--~~~~~l~~ 153 (177)
+.+++++.|.+|+..+.. -+|+++|-.. -.. ..+ ...+|....+|++| ..++ .....|.+
T Consensus 171 teaEIEeDmmeIVqLLGk----~rVvfVTHVNA~tadGt~Ia~RarLIArV~aiAaR~dVp~vDPt~Lm~dwGQaRaLe~ 246 (831)
T PRK15180 171 DEHAIEQDMMEIVQLLGR----DRVMFMTHVDAVTRAGTVILSRSRLIKNVDTIAARMDIPCVNPTNLMEKWGQKRALEK 246 (831)
T ss_pred cHHHHHHHHHHHHHHhCC----CcEEEEEeecccCCCCCCHHHHHHHHHHHHHHHhcCCCcccCchhhhcccchhhcccC
Confidence 456777778888777763 3688887432 111 122 24456678899998 2222 22345777
Q ss_pred CCccceeecc
Q 030474 154 IGKQQLFYHG 163 (177)
Q Consensus 154 dG~~~~~~~~ 163 (177)
+|..---|-|
T Consensus 247 ~GlDltHYTP 256 (831)
T PRK15180 247 NGDDLTHYTD 256 (831)
T ss_pred CCCCcccCCh
Confidence 7765444444
No 352
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=20.83 E-value=3.8e+02 Score=25.04 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=31.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
..++.+++.++.-++.- .++++..+||..||+++++...++
T Consensus 310 ~~~~~r~~h~dld~vyd---------~dp~qq~~~L~~lLdrlk~~G~nt 350 (671)
T PRK14582 310 EKSPQRVMHIDLDYVYD---------ENPQQQDRNIDVLIQRVKDMQIST 350 (671)
T ss_pred CCCCEEEEEeccccccC---------CCHHHHHHHHHHHHHHHHHcCCCE
Confidence 46677777777654432 379999999999999999996544
No 353
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.74 E-value=1.3e+02 Score=22.86 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=37.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH-HHHHH-HHhCCCcee
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG-RMEYA-KYVNSSPYI 140 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~-~~~~~-a~~~~vp~i 140 (177)
.+.|+++|+++|-.-... ..+..-+.+.+++|...++. +.-||+-+..|..... +...+ .+..+-- .
T Consensus 75 ~~adv~~I~VpTP~~~~~-------~~Dls~v~~a~~~i~~~l~~---~~lvV~~STvppGtt~~~~~~ile~~~~~~-~ 143 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDG-------SPDLSYVESAIESIAPVLRP---GDLVVIESTVPPGTTEELLKPILEKRSGKK-E 143 (185)
T ss_dssp HH-SEEEE----EBETTT-------SBETHHHHHHHHHHHHHHCS---CEEEEESSSSSTTHHHHHHHHHHHHHCCTT-T
T ss_pred hccceEEEecCCCccccC-------CccHHHHHHHHHHHHHHHhh---cceEEEccEEEEeeehHhhhhhhhhhcccc-c
Confidence 457999999998443311 13555566666666666653 3445554544554432 33333 3322211 2
Q ss_pred ecccCCCCCCCCCCCccceeecc
Q 030474 141 NCFLGRPPKYPQPIGKQQLFYHG 163 (177)
Q Consensus 141 d~~l~~~~~~l~~dG~~~~~~~~ 163 (177)
|-.+...|+++.+.-.-..+.||
T Consensus 144 ~f~la~~PErl~~G~a~~d~~~~ 166 (185)
T PF03721_consen 144 DFHLAYSPERLREGRAIEDFRNP 166 (185)
T ss_dssp CEEEEE------TTSHHHHHHSS
T ss_pred CCeEEECCCccCCCCcchhccCC
Confidence 22333456666554333344443
No 354
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=20.72 E-value=1.9e+02 Score=27.25 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+.|+||+.+|.+-.... ++..+.+. ..-.+-.++|+.+.+.++++-+|+++-.|+
T Consensus 500 ~~aD~vIv~vg~~~~~~~---E~~Dr~~l-~Lp~~Q~~Li~~v~~~~~~vVvVl~~g~P~ 555 (765)
T PRK15098 500 KQADVVVAVVGEAQGMAH---EASSRTDI-TIPQSQRDLIAALKATGKPLVLVLMNGRPL 555 (765)
T ss_pred hcCCEEEEEEcCCCCccc---cCCCcccc-cCCHHHHHHHHHHHHhCcCEEEEEeCCcee
Confidence 578999999997632211 11111111 123345577888888776666666654444
No 355
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=20.63 E-value=2.3e+02 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=33.5
Q ss_pred EEEEeccccccccCC----CCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 68 TTIFFGANDAALFGR----TSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~----~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
|++-.|||.-..-.. +..+++++-++|-+=++++++.+++++|++
T Consensus 195 I~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~P~~ 243 (559)
T PTZ00317 195 VVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRWPNA 243 (559)
T ss_pred eEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhCCCe
Confidence 567789984332211 234567889999999999999999999874
No 356
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=20.50 E-value=2.3e+02 Score=20.68 Aligned_cols=40 Identities=13% Similarity=-0.010 Sum_probs=24.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
..||+|++.+...|.. . .++++.+++..|..+||+++..+
T Consensus 41 ~~~dlvl~d~~~~~~~------------g-------~~~~~~l~~~~~~~~iivls~~~ 80 (218)
T TIGR01387 41 DDYDLIILDVMLPGMD------------G-------WQILQTLRRSGKQTPVLFLTARD 80 (218)
T ss_pred CCCCEEEEeCCCCCCC------------H-------HHHHHHHHccCCCCcEEEEEcCC
Confidence 5689999855443321 1 24455666666778888887543
No 357
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=20.45 E-value=97 Score=23.98 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCC
Q 030474 100 IMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~ 120 (177)
++++.+++..|.++||++|..
T Consensus 57 ~~~~~l~~~~p~~~iIvlt~~ 77 (207)
T PRK11475 57 SCLTELAIKFPRMRRLVIADD 77 (207)
T ss_pred HHHHHHHHHCCCCCEEEEeCC
Confidence 467888888999999999854
No 358
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.36 E-value=3.5e+02 Score=19.62 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=47.5
Q ss_pred HHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHH
Q 030474 26 LADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQH 104 (177)
Q Consensus 26 l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~ 104 (177)
+...+ ..+++|+|.|..= +.....+ ... .++||+|-++. .. -.....++++++.
T Consensus 21 v~~~l~~~GfeVi~LG~~v-~~e~~v~---aa~----~~~adiVglS~------l~-----------~~~~~~~~~~~~~ 75 (134)
T TIGR01501 21 LDHAFTNAGFNVVNLGVLS-PQEEFIK---AAI----ETKADAILVSS------LY-----------GHGEIDCKGLRQK 75 (134)
T ss_pred HHHHHHHCCCEEEECCCCC-CHHHHHH---HHH----HcCCCEEEEec------cc-----------ccCHHHHHHHHHH
Confidence 33334 4689999999763 2222222 222 36889988842 10 0123456778888
Q ss_pred HHHhCCCCEEEEEcCC-CCChhHHH--HHHHHhCCCcee
Q 030474 105 LKRLSPIMLVVLITPP-PVDEDGRM--EYAKYVNSSPYI 140 (177)
Q Consensus 105 ~r~~~p~~~vil~tp~-p~~~~~~~--~~~a~~~~vp~i 140 (177)
++++...-.+++++-. ++.++.+. +...++.++.-+
T Consensus 76 l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~v 114 (134)
T TIGR01501 76 CDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRV 114 (134)
T ss_pred HHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEE
Confidence 8887653445556543 34443332 222344554433
No 359
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=20.34 E-value=3.1e+02 Score=21.63 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 98 LKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
|.++++.+.+..+....|+-.|.-+....-.++.-.+..+|++
T Consensus 141 L~~l~elie~~~~~palvIg~PVGFv~AaesKe~L~~~~iP~i 183 (210)
T COG2082 141 LFELLELIEEGGIKPALVIGVPVGFVGAAESKEALRESPIPYI 183 (210)
T ss_pred HHHHHHHHHccCCCCcEEEEcCCcccchHHHHHHHHhCCCCeE
Confidence 4555566665444555666666666544434444455669998
No 360
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.32 E-value=3.7e+02 Score=20.31 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCChh
Q 030474 97 NLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (177)
Q Consensus 97 nl~~ii~~~r~~~p~~~vil~tp~p~~~~ 125 (177)
-++++.+.+++++|+.+|+-. ..+++++
T Consensus 60 v~~~~~~~l~~~yP~l~i~g~-~g~f~~~ 87 (177)
T TIGR00696 60 VLQQLKVKLIKEYPKLKIVGA-FGPLEPE 87 (177)
T ss_pred HHHHHHHHHHHHCCCCEEEEE-CCCCChH
Confidence 456778889999999998877 5566554
No 361
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=20.28 E-value=2.2e+02 Score=24.17 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=31.6
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEE-cccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLL-RGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N-~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
+|++++.|+.... .++.+.+.+.+. .++.+.- .++..+-+.....+.-+... ..++|. ||.+|+
T Consensus 31 ~~~lvvtd~~~~~----~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~---~~~~D~-IIaiGG 96 (382)
T PRK10624 31 KKALIVTDKTLVK----CGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFK---ASGADY-LIAIGG 96 (382)
T ss_pred CEEEEEeCcchhh----CcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHH---hcCCCE-EEEeCC
Confidence 4677777764421 256666766663 2344332 24544433333333322222 367785 555554
No 362
>PLN02970 serine racemase
Probab=20.28 E-value=2.3e+02 Score=23.52 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=25.5
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+||+|++..|+= ..+.-+..-+|+..|+++||.+.|.
T Consensus 175 ~~D~vv~~vG~G--------------------G~~~Gi~~~lk~~~~~~kvi~Vep~ 211 (328)
T PLN02970 175 ELDVIIVPISGG--------------------GLISGIALAAKAIKPSIKIIAAEPK 211 (328)
T ss_pred CCCEEEEeeCch--------------------HHHHHHHHHHHhcCCCCEEEEEEEC
Confidence 489999998852 2333444555556788999999874
No 363
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=20.27 E-value=2.7e+02 Score=25.44 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=49.3
Q ss_pred EEEEeccccccccCCCCCCccCCHHHHH--HHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHH--HHH--HhCCCceee
Q 030474 68 TTIFFGANDAALFGRTSERQHVPVEEYG--DNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRME--YAK--YVNSSPYIN 141 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~~~~~~~~~~~~~~--~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~--~~a--~~~~vp~id 141 (177)
|++++| |..+.+- ...-.+.+++. ..|.++.++++++ +++|++=+|-.+.-..... ..+ --+++||.-
T Consensus 370 VtlSLG--DGLRPG~--iaDA~D~AQ~~EL~tLGELt~rA~e~--gVQVMIEGPGHVPl~~I~~N~~lqk~lc~~APfYv 443 (607)
T PRK09284 370 VSFSLG--DGLRPGS--IADANDEAQFAELETLGELTKIAWEH--DVQVMIEGPGHVPMHLIKENMDKQLEHCHEAPFYT 443 (607)
T ss_pred eeeecc--CCcCCCc--cccCCcHHHHHHHHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCeee
Confidence 567787 6666541 11123444443 3567788888887 7888888886443322221 111 125677762
Q ss_pred -cccCC--CCCC---CCCCCccceeecccchhhhh
Q 030474 142 -CFLGR--PPKY---PQPIGKQQLFYHGGCSICYF 170 (177)
Q Consensus 142 -~~l~~--~~~~---l~~dG~~~~~~~~~~~~~~~ 170 (177)
-+|.. .+-| -++-|-...-++|.+-+||.
T Consensus 444 LGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYV 478 (607)
T PRK09284 444 LGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYV 478 (607)
T ss_pred cCCcccccCCCchHHHHHHHHHHHHHcCCCeEEec
Confidence 22221 1222 23333333445666666663
No 364
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=20.22 E-value=1.9e+02 Score=20.72 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+.+.+|+.++++.+|+. +.+||++.
T Consensus 21 ~~~~~~~~i~~l~~~ar~~--~~~vi~~~ 47 (161)
T cd00431 21 GADELVPNINRLLAAARAA--GIPVIFTR 47 (161)
T ss_pred cHHHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 4689999999999999998 57788776
No 365
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.21 E-value=2.4e+02 Score=22.88 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.+++. ++++|+..+..-. ...+.++++.+++.+
T Consensus 212 ~~~l~~l~~~ik~~--~v~~if~e~~~~~--~~~~~ia~~~gv~v~ 253 (287)
T cd01137 212 PKQVATLIEQVKKE--KVPAVFVESTVND--RLMKQVAKETGAKIG 253 (287)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEeCCCCh--HHHHHHHHHhCCccc
Confidence 67888999999998 7899998876543 345677888888753
No 366
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.21 E-value=1.8e+02 Score=25.89 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=25.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVL 116 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil 116 (177)
...|.|+| |+.... -+++.++|+.+|+.+|++.||.
T Consensus 236 aGVd~i~~-----D~a~g~-------------~~~~~~~i~~i~~~~~~~~vi~ 271 (475)
T TIGR01303 236 AGVDVLVI-----DTAHGH-------------QVKMISAIKAVRALDLGVPIVA 271 (475)
T ss_pred hCCCEEEE-----eCCCCC-------------cHHHHHHHHHHHHHCCCCeEEE
Confidence 45677777 666521 2677888899999888877665
No 367
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.18 E-value=1.5e+02 Score=23.76 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=30.2
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC--CChhH
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP--VDEDG 126 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p--~~~~~ 126 (177)
..+-|+++| |..... ...+-..++.+++..+|.-...-|+|++|..| ++++.
T Consensus 121 ~~~~dViII-----DSls~~--------~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~ 174 (235)
T COG2874 121 RWEKDVIII-----DSLSAF--------ATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDV 174 (235)
T ss_pred hhcCCEEEE-----ecccHH--------hhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHH
Confidence 356788888 665431 11112345556666666654456788888766 45543
No 368
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=20.16 E-value=1.9e+02 Score=19.44 Aligned_cols=9 Identities=11% Similarity=0.095 Sum_probs=5.0
Q ss_pred CEEEEEcCC
Q 030474 112 MLVVLITPP 120 (177)
Q Consensus 112 ~~vil~tp~ 120 (177)
.+++-+..+
T Consensus 24 ~~~~~i~~~ 32 (132)
T PF00004_consen 24 FPFIEIDGS 32 (132)
T ss_dssp SEEEEEETT
T ss_pred ccccccccc
Confidence 556666544
No 369
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.13 E-value=2.6e+02 Score=24.66 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=35.6
Q ss_pred CCCCcEEEEEeccccccccCCCC--CCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 62 SNPPVATTIFFGANDAALFGRTS--ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~--~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+|+++|| |..---..+ +..+-++.+.++.-.++++.+|+. ++.+++++
T Consensus 166 ~~~p~lvVI-----DSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~--~i~~fiVG 217 (456)
T COG1066 166 QEKPDLVVI-----DSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTK--NIAIFIVG 217 (456)
T ss_pred hcCCCEEEE-----eccceeecccccCCCCcHHHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 478999998 554211000 112358999999999999999998 67777765
No 370
>PRK13529 malate dehydrogenase; Provisional
Probab=20.11 E-value=2.4e+02 Score=25.74 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=34.1
Q ss_pred EEEEeccccccccCC----CCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 68 TTIFFGANDAALFGR----TSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 68 Vvi~~G~ND~~~~~~----~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
|++-.|||+-..-.. +..+++++-++|-+=++++++.+++.+|++
T Consensus 193 I~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~P~~ 241 (563)
T PRK13529 193 VVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRFPNA 241 (563)
T ss_pred eEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhCCCe
Confidence 467779876433221 234567899999999999999999999874
No 371
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=20.11 E-value=1.8e+02 Score=21.28 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=21.1
Q ss_pred EEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 114 VVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 114 vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
|++++||........+.++++.++++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 5777888888877777777777777773
No 372
>PRK09108 type III secretion system protein HrcU; Validated
Probab=20.11 E-value=3.3e+02 Score=23.21 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=39.2
Q ss_pred HHHHhCCCCEEEEEcCCCCC------h----------------hHHHHHHHHhCCCcee-ecccCCCCCCCCCCCc--cc
Q 030474 104 HLKRLSPIMLVVLITPPPVD------E----------------DGRMEYAKYVNSSPYI-NCFLGRPPKYPQPIGK--QQ 158 (177)
Q Consensus 104 ~~r~~~p~~~vil~tp~p~~------~----------------~~~~~~~a~~~~vp~i-d~~l~~~~~~l~~dG~--~~ 158 (177)
+..+.-|++.||++.|+... . ..+-+++|++++||.+ |.+|.+. -|--+-|. -.
T Consensus 250 ~m~~~V~~AdvVItNPTH~AVAL~Y~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VPvven~pLARa-Ly~~~vg~~IP~ 328 (353)
T PRK09108 250 PPRQRVARANVVVVNPTHYAVALRYAPDEHPLPRVIAKGVDDGALALRRHAHALGIPIVGNPPVARA-LYRVELDEPIPE 328 (353)
T ss_pred HHhccCCCCcEEEECCCceEEEeEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHHHHH-HhcCCCCCcCCH
Confidence 34445689999999997531 1 1134567889999999 5444322 12122232 23
Q ss_pred eeecccchhhhhhhhc
Q 030474 159 LFYHGGCSICYFLLQL 174 (177)
Q Consensus 159 ~~~~~~~~~~~~~~~~ 174 (177)
.+|..=..+.-|+.||
T Consensus 329 ely~aVA~iL~~v~~l 344 (353)
T PRK09108 329 ELFETVAAILRWVDEL 344 (353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4454445555555544
No 373
>PTZ00117 malate dehydrogenase; Provisional
Probab=20.09 E-value=3.1e+02 Score=22.69 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++..|.-.-.. +...+.+. .-++++.+.+.+..|++.+|+++-
T Consensus 72 ~~ADiVVitag~~~~~g--------~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 72 KDSDVVVITAGVQRKEE--------MTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCEEEECCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 46799999988522110 12233333 346678888888889887777753
No 374
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=20.05 E-value=3.1e+02 Score=19.47 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=34.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCC-CCCh-----hHHHHHHHHhC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP-IMLVVLITPP-PVDE-----DGRMEYAKYVN 135 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p-~~~vil~tp~-p~~~-----~~~~~~~a~~~ 135 (177)
...|.+++.+..+|.. +. +.+.++++.+++..+ +.++++++-= -..+ .......++..
T Consensus 71 ~~~~~~i~v~d~~~~~-----------sf----~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~ 135 (161)
T cd04117 71 RRAQGIFLVYDISSER-----------SY----QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEY 135 (161)
T ss_pred cCCcEEEEEEECCCHH-----------HH----HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc
Confidence 4578999998877643 22 234444555544432 4667776521 1111 12234445667
Q ss_pred CCceeec
Q 030474 136 SSPYINC 142 (177)
Q Consensus 136 ~vp~id~ 142 (177)
+++|+..
T Consensus 136 ~~~~~e~ 142 (161)
T cd04117 136 GMDFFET 142 (161)
T ss_pred CCEEEEE
Confidence 7888753
No 375
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.03 E-value=73 Score=24.34 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCChhHHH
Q 030474 98 LKIMVQHLKRLSPIMLVVLITPPPVDEDGRM 128 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp~p~~~~~~~ 128 (177)
..+.+..+++.+|+.++.+++|.--..+.|+
T Consensus 58 A~Evv~eLk~eyp~ik~avitpFe~q~~~Wn 88 (180)
T COG4474 58 AAEVVIELKEEYPHIKLAVITPFEEQGKNWN 88 (180)
T ss_pred HHHHHHHHHhhCCCeeEEEEechhhhccccC
Confidence 3466778899999999999999876555554
Done!