Query 030474
Match_columns 177
No_of_seqs 153 out of 1571
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 23:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dci_A Arylesterase; SGNH_hydr 99.9 6.2E-26 2.1E-30 177.7 11.2 155 2-173 23-220 (232)
2 3hp4_A GDSL-esterase; psychrot 99.9 1.3E-25 4.6E-30 168.9 12.2 154 1-173 1-172 (185)
3 2q0q_A ARYL esterase; SGNH hyd 99.9 1.5E-25 5E-30 172.4 11.8 154 1-173 1-206 (216)
4 4hf7_A Putative acylhydrolase; 99.9 1.7E-25 5.7E-30 173.0 8.8 149 3-173 27-199 (209)
5 4h08_A Putative hydrolase; GDS 99.9 7E-25 2.4E-29 167.6 10.3 148 2-173 20-188 (200)
6 1ivn_A Thioesterase I; hydrola 99.9 1.1E-24 3.7E-29 165.2 10.4 153 2-173 1-168 (190)
7 3mil_A Isoamyl acetate-hydroly 99.9 1.2E-24 4.1E-29 169.3 10.8 159 2-173 3-201 (240)
8 1k7c_A Rhamnogalacturonan acet 99.9 6.6E-25 2.2E-29 172.8 5.9 159 4-173 2-206 (233)
9 3dc7_A Putative uncharacterize 99.9 7.2E-24 2.4E-28 165.3 10.4 160 2-173 21-214 (232)
10 1yzf_A Lipase/acylhydrolase; s 99.9 6.7E-24 2.3E-28 159.8 9.1 152 3-173 2-180 (195)
11 3rjt_A Lipolytic protein G-D-S 99.9 1.4E-23 4.9E-28 160.3 9.9 162 2-173 8-207 (216)
12 2hsj_A Putative platelet activ 99.9 4E-23 1.4E-27 158.7 11.8 148 2-173 34-207 (214)
13 3p94_A GDSL-like lipase; serin 99.9 3E-23 1E-27 157.8 9.6 148 4-173 24-193 (204)
14 1vjg_A Putative lipase from th 99.9 8E-23 2.7E-27 157.9 9.0 159 3-173 21-205 (218)
15 3bzw_A Putative lipase; protei 99.9 1.4E-22 4.7E-27 162.5 10.5 162 2-173 26-253 (274)
16 1es9_A PAF-AH, platelet-activa 99.9 9.2E-22 3.1E-26 153.6 13.9 147 2-173 38-206 (232)
17 2vpt_A Lipolytic enzyme; ester 99.9 4E-23 1.4E-27 159.8 4.6 152 3-173 6-189 (215)
18 3skv_A SSFX3; jelly roll, GDSL 99.9 8.9E-22 3.1E-26 166.0 12.4 151 2-172 185-368 (385)
19 1fxw_F Alpha2, platelet-activa 99.9 8.2E-22 2.8E-26 153.9 10.9 148 2-173 39-207 (229)
20 2o14_A Hypothetical protein YX 99.9 1.2E-21 4.3E-26 164.5 12.5 155 3-173 163-353 (375)
21 2wao_A Endoglucanase E; plant 99.8 2E-19 7E-24 148.8 12.0 155 2-172 122-320 (341)
22 1esc_A Esterase; 2.10A {Strept 99.8 2.2E-19 7.4E-24 146.4 10.1 167 3-171 6-292 (306)
23 2waa_A Acetyl esterase, xylan 99.8 1.3E-18 4.6E-23 144.4 13.3 154 2-172 132-326 (347)
24 2w9x_A AXE2A, CJCE2B, putative 99.7 5.2E-17 1.8E-21 135.7 11.8 158 2-172 142-346 (366)
25 4i8i_A Hypothetical protein; 5 98.0 2.1E-05 7E-10 63.1 8.6 151 3-171 11-215 (271)
26 3kvn_X Esterase ESTA; beta bar 97.2 0.00092 3.1E-08 59.2 8.5 56 63-122 145-200 (632)
27 1tmy_A CHEY protein, TMY; chem 91.5 1.1 3.9E-05 29.2 7.7 85 1-122 1-86 (120)
28 3kcn_A Adenylate cyclase homol 90.6 2.3 8E-05 29.1 9.0 83 2-121 4-86 (151)
29 2qxy_A Response regulator; reg 88.9 3.8 0.00013 27.4 9.9 83 1-122 3-86 (142)
30 1zmb_A Acetylxylan esterase re 88.5 1.3 4.6E-05 35.2 7.0 79 33-123 72-162 (290)
31 3cu5_A Two component transcrip 88.4 3.4 0.00012 27.9 8.4 84 1-121 1-87 (141)
32 1srr_A SPO0F, sporulation resp 88.2 3.2 0.00011 27.1 7.9 83 1-121 2-85 (124)
33 1mvo_A PHOP response regulator 86.9 4.5 0.00015 26.7 8.2 84 1-122 2-86 (136)
34 3cfy_A Putative LUXO repressor 86.5 5.4 0.00018 26.7 8.5 83 1-121 3-86 (137)
35 3nhm_A Response regulator; pro 86.4 4.6 0.00016 26.6 8.0 82 2-121 4-87 (133)
36 3eod_A Protein HNR; response r 86.4 5.2 0.00018 26.2 8.9 83 2-122 7-90 (130)
37 3f6c_A Positive transcription 86.4 5.2 0.00018 26.3 8.3 84 3-123 2-86 (134)
38 3hzh_A Chemotaxis response reg 86.3 1.5 5.3E-05 30.3 5.7 85 2-121 36-121 (157)
39 3gl9_A Response regulator; bet 84.7 6.3 0.00022 25.7 8.1 83 1-121 1-86 (122)
40 3hdg_A Uncharacterized protein 84.3 3.5 0.00012 27.4 6.6 82 3-122 8-90 (137)
41 3hv2_A Response regulator/HD d 83.6 8.3 0.00028 26.2 9.6 81 3-121 15-96 (153)
42 4e7p_A Response regulator; DNA 83.3 8.4 0.00029 26.1 8.4 41 63-122 65-105 (150)
43 1dz3_A Stage 0 sporulation pro 82.3 6.1 0.00021 26.0 7.1 84 1-121 1-87 (130)
44 3i42_A Response regulator rece 82.2 8.1 0.00028 25.1 8.6 86 1-124 1-90 (127)
45 3bma_A D-alanyl-lipoteichoic a 82.1 6.4 0.00022 33.0 8.3 68 95-169 275-358 (407)
46 2qr3_A Two-component system re 81.9 7.5 0.00026 25.7 7.5 86 3-121 4-90 (140)
47 3rqi_A Response regulator prot 81.9 11 0.00038 26.7 8.8 82 2-121 7-89 (184)
48 1kgs_A DRRD, DNA binding respo 81.5 7.9 0.00027 28.2 8.1 83 1-121 1-84 (225)
49 3kto_A Response regulator rece 81.2 5.7 0.00019 26.4 6.7 84 3-122 7-91 (136)
50 2jba_A Phosphate regulon trans 81.1 4.9 0.00017 26.1 6.2 82 1-120 1-85 (127)
51 3eul_A Possible nitrate/nitrit 80.7 6.7 0.00023 26.6 7.0 41 63-122 60-100 (152)
52 1qkk_A DCTD, C4-dicarboxylate 80.6 11 0.00037 25.6 8.7 81 2-120 3-84 (155)
53 3eqz_A Response regulator; str 79.5 10 0.00036 24.7 8.0 38 65-121 47-84 (135)
54 1yio_A Response regulatory pro 79.4 15 0.0005 26.3 9.2 82 2-121 4-86 (208)
55 2zay_A Response regulator rece 79.1 6.6 0.00022 26.3 6.5 83 2-122 8-93 (147)
56 3n53_A Response regulator rece 78.6 9.2 0.00031 25.4 7.1 81 3-121 4-86 (140)
57 3f6p_A Transcriptional regulat 78.5 11 0.00038 24.4 7.8 82 1-121 1-83 (120)
58 2rjn_A Response regulator rece 77.8 14 0.00046 25.0 9.7 81 3-121 8-89 (154)
59 3snk_A Response regulator CHEY 77.6 5 0.00017 26.6 5.4 40 63-121 58-97 (135)
60 2gkg_A Response regulator homo 77.6 11 0.00038 24.1 7.1 79 1-117 4-86 (127)
61 2rdm_A Response regulator rece 77.4 12 0.00042 24.3 9.1 85 3-123 6-91 (132)
62 3cg4_A Response regulator rece 76.3 14 0.00048 24.4 8.7 82 2-121 7-91 (142)
63 3grc_A Sensor protein, kinase; 76.3 14 0.00048 24.4 7.9 80 3-120 7-89 (140)
64 3cz5_A Two-component response 75.4 14 0.00047 24.9 7.4 83 3-122 6-90 (153)
65 1zgz_A Torcad operon transcrip 75.3 13 0.00046 23.7 8.1 83 1-122 1-84 (122)
66 2jfz_A Glutamate racemase; cel 75.1 9 0.00031 29.5 6.9 88 34-140 3-90 (255)
67 3cnb_A DNA-binding response re 74.9 15 0.00052 24.1 8.2 84 2-122 8-95 (143)
68 3ist_A Glutamate racemase; str 73.6 14 0.00048 28.8 7.7 89 33-140 7-95 (269)
69 3crn_A Response regulator rece 73.5 16 0.00056 23.9 8.1 82 2-121 3-85 (132)
70 3klo_A Transcriptional regulat 73.4 12 0.0004 27.4 7.0 83 3-121 8-93 (225)
71 3kyj_B CHEY6 protein, putative 72.9 18 0.00061 24.1 8.5 84 2-122 13-98 (145)
72 3pzy_A MOG; ssgcid, seattle st 72.7 2.1 7.1E-05 31.1 2.5 65 4-74 11-76 (164)
73 1jlj_A Gephyrin; globular alph 72.4 2.8 9.7E-05 31.1 3.2 67 4-74 18-88 (189)
74 3iwt_A 178AA long hypothetical 71.3 2.4 8.2E-05 30.9 2.6 67 5-74 20-91 (178)
75 1y5e_A Molybdenum cofactor bio 70.9 5.9 0.0002 28.6 4.6 65 4-74 17-82 (169)
76 2is8_A Molybdopterin biosynthe 70.9 2.8 9.7E-05 30.2 2.8 67 4-74 5-72 (164)
77 2gzm_A Glutamate racemase; enz 70.6 15 0.00053 28.4 7.3 89 33-140 5-93 (267)
78 2j48_A Two-component sensor ki 69.8 17 0.00059 22.6 7.4 85 2-124 1-88 (119)
79 2jk1_A HUPR, hydrogenase trans 69.8 21 0.00071 23.5 7.9 83 2-122 1-83 (139)
80 3kht_A Response regulator; PSI 69.5 7.9 0.00027 25.9 4.9 82 3-121 6-91 (144)
81 1zuw_A Glutamate racemase 1; ( 69.4 19 0.00064 28.0 7.5 89 33-140 5-94 (272)
82 3r0j_A Possible two component 69.1 18 0.0006 27.0 7.2 81 3-121 24-105 (250)
83 3rfq_A Pterin-4-alpha-carbinol 69.0 4 0.00014 30.3 3.4 65 4-74 34-99 (185)
84 1dbw_A Transcriptional regulat 69.0 20 0.00069 23.1 9.4 82 2-121 3-85 (126)
85 3hdv_A Response regulator; PSI 68.3 22 0.00075 23.2 7.4 84 2-122 7-92 (136)
86 3a10_A Response regulator; pho 68.1 20 0.00068 22.6 7.4 80 3-120 2-82 (116)
87 3kbq_A Protein TA0487; structu 68.0 2.6 9E-05 31.0 2.1 66 3-74 6-72 (172)
88 1s8n_A Putative antiterminator 67.6 22 0.00076 25.4 7.3 81 1-119 12-93 (205)
89 2g2c_A Putative molybdenum cof 67.1 3.1 0.00011 30.1 2.4 66 4-74 9-79 (167)
90 2qv0_A Protein MRKE; structura 66.9 21 0.00071 23.6 6.6 81 3-120 10-92 (143)
91 3heb_A Response regulator rece 66.7 20 0.00067 24.1 6.5 89 2-121 4-99 (152)
92 1ys7_A Transcriptional regulat 66.7 33 0.0011 24.8 8.2 80 3-120 8-88 (233)
93 3jte_A Response regulator rece 66.1 14 0.00048 24.5 5.6 83 3-121 4-87 (143)
94 3out_A Glutamate racemase; str 65.6 35 0.0012 26.5 8.4 90 33-141 9-99 (268)
95 2jfn_A Glutamate racemase; cel 65.3 29 0.001 27.1 8.0 91 33-141 23-113 (285)
96 2oqr_A Sensory transduction pr 65.1 24 0.00082 25.6 7.1 81 1-120 3-84 (230)
97 1iuk_A Hypothetical protein TT 64.9 32 0.0011 23.8 8.6 105 3-140 14-121 (140)
98 1y80_A Predicted cobalamin bin 64.8 27 0.00093 25.7 7.4 66 31-121 114-181 (210)
99 1a04_A Nitrate/nitrite respons 64.7 31 0.001 24.7 7.6 83 3-122 6-90 (215)
100 3pqe_A L-LDH, L-lactate dehydr 64.6 12 0.00041 30.1 5.6 50 63-120 72-124 (326)
101 3lua_A Response regulator rece 63.7 28 0.00096 22.8 9.3 85 2-122 4-92 (140)
102 3gt7_A Sensor protein; structu 63.2 32 0.0011 23.2 9.4 82 2-121 7-91 (154)
103 3cg0_A Response regulator rece 63.1 28 0.00097 22.6 7.4 82 3-122 10-93 (140)
104 3ff4_A Uncharacterized protein 62.4 34 0.0012 23.3 9.4 104 3-140 5-109 (122)
105 1y81_A Conserved hypothetical 62.0 36 0.0012 23.5 10.2 107 2-141 14-121 (138)
106 1a2o_A CHEB methylesterase; ba 61.6 45 0.0016 26.7 8.7 82 1-120 1-85 (349)
107 2pjk_A 178AA long hypothetical 61.1 8.9 0.00031 28.0 3.9 68 4-74 19-91 (178)
108 3nep_X Malate dehydrogenase; h 61.1 14 0.00049 29.5 5.5 50 63-120 68-120 (314)
109 1zz1_A Histone deacetylase-lik 60.9 29 0.001 28.4 7.4 54 62-118 255-308 (369)
110 3p7m_A Malate dehydrogenase; p 60.9 15 0.00053 29.3 5.6 50 63-120 72-124 (321)
111 3q9s_A DNA-binding response re 60.7 49 0.0017 24.6 8.8 21 100-121 98-118 (249)
112 2gwr_A DNA-binding response re 60.0 42 0.0014 24.6 7.7 83 1-122 4-87 (238)
113 1oju_A MDH, malate dehydrogena 60.0 15 0.0005 29.1 5.3 51 63-122 68-121 (294)
114 2qvg_A Two component response 59.8 31 0.001 22.6 6.4 87 3-121 8-99 (143)
115 2apj_A Putative esterase; AT4G 59.8 37 0.0013 26.3 7.5 91 23-123 99-204 (260)
116 4dad_A Putative pilus assembly 59.4 16 0.00055 24.3 4.9 40 63-121 66-105 (146)
117 3ldh_A Lactate dehydrogenase; 58.9 15 0.00052 29.7 5.3 51 62-120 87-140 (330)
118 3men_A Acetylpolyamine aminohy 58.9 17 0.00059 29.8 5.6 57 62-126 289-345 (362)
119 1k68_A Phytochrome response re 58.5 34 0.0012 22.1 7.3 90 2-122 2-96 (140)
120 2vvt_A Glutamate racemase; iso 58.0 30 0.001 27.1 6.8 89 33-140 26-114 (290)
121 3ug3_A Alpha-L-arabinofuranosi 57.9 55 0.0019 28.0 8.8 72 63-141 180-253 (504)
122 2vyc_A Biodegradative arginine 57.8 85 0.0029 28.0 10.5 91 4-119 2-93 (755)
123 2pbq_A Molybdenum cofactor bio 57.5 6.5 0.00022 28.7 2.6 66 4-74 9-78 (178)
124 3gvi_A Malate dehydrogenase; N 57.2 17 0.00059 29.1 5.4 50 63-120 74-126 (324)
125 3hhp_A Malate dehydrogenase; M 56.2 22 0.00074 28.4 5.7 49 63-119 68-119 (312)
126 2lpm_A Two-component response 56.1 9 0.00031 26.2 3.0 79 3-120 9-88 (123)
127 2d59_A Hypothetical protein PH 55.5 48 0.0016 22.9 10.7 105 3-140 23-128 (144)
128 2i2x_B MTAC, methyltransferase 55.4 26 0.00088 27.0 5.9 67 31-122 149-215 (258)
129 3tl2_A Malate dehydrogenase; c 55.4 22 0.00075 28.4 5.6 51 62-120 76-129 (315)
130 1uuy_A CNX1, molybdopterin bio 55.4 12 0.00039 26.9 3.7 67 4-74 9-81 (167)
131 2e85_A Hydrogenase 3 maturatio 55.1 54 0.0018 23.3 7.6 43 1-47 4-50 (159)
132 2jfq_A Glutamate racemase; cel 55.0 37 0.0013 26.5 6.9 90 32-140 23-112 (286)
133 1di6_A MOGA, molybdenum cofact 55.0 11 0.00036 28.2 3.5 67 4-74 7-76 (195)
134 2b4a_A BH3024; flavodoxin-like 53.6 43 0.0015 21.8 8.2 82 2-120 15-98 (138)
135 1b73_A Glutamate racemase; iso 53.5 43 0.0015 25.5 6.9 67 34-118 3-69 (254)
136 1dc7_A NTRC, nitrogen regulati 53.2 21 0.0007 22.7 4.4 81 3-121 4-85 (124)
137 1qv9_A F420-dependent methylen 53.1 77 0.0026 24.7 8.0 66 63-140 29-95 (283)
138 3eq2_A Probable two-component 52.8 35 0.0012 27.3 6.6 79 3-119 6-85 (394)
139 3t8y_A CHEB, chemotaxis respon 52.7 52 0.0018 22.4 9.7 22 100-122 88-109 (164)
140 3q9b_A Acetylpolyamine amidohy 52.6 7.2 0.00025 31.8 2.3 49 62-118 271-319 (341)
141 2oho_A Glutamate racemase; iso 52.2 61 0.0021 25.0 7.7 89 33-140 14-102 (273)
142 2v5j_A 2,4-dihydroxyhept-2-ENE 52.1 18 0.00063 28.5 4.6 50 64-117 188-237 (287)
143 2yxb_A Coenzyme B12-dependent 51.6 61 0.0021 22.9 8.7 66 31-121 44-110 (161)
144 1smk_A Malate dehydrogenase, g 51.2 31 0.0011 27.4 5.9 53 63-124 75-130 (326)
145 1b8p_A Protein (malate dehydro 51.1 35 0.0012 27.1 6.2 48 63-119 82-134 (329)
146 2d4a_B Malate dehydrogenase; a 50.9 38 0.0013 26.7 6.4 49 63-119 66-117 (308)
147 3vku_A L-LDH, L-lactate dehydr 50.1 18 0.0006 29.1 4.3 50 63-120 75-127 (326)
148 1mld_A Malate dehydrogenase; o 50.0 38 0.0013 26.8 6.2 54 63-123 67-121 (314)
149 3to5_A CHEY homolog; alpha(5)b 47.0 65 0.0022 21.9 6.7 82 4-122 14-98 (134)
150 1mkz_A Molybdenum cofactor bio 46.9 18 0.00063 26.0 3.6 65 4-74 14-79 (172)
151 2dwu_A Glutamate racemase; iso 45.7 48 0.0016 25.7 6.1 69 33-119 9-77 (276)
152 2qsj_A DNA-binding response re 45.5 25 0.00087 23.5 4.1 23 100-122 67-89 (154)
153 3ilh_A Two component response 45.5 55 0.0019 21.3 5.8 88 3-122 10-103 (146)
154 3vtf_A UDP-glucose 6-dehydroge 45.3 46 0.0016 28.0 6.3 91 63-163 96-189 (444)
155 1ez4_A Lactate dehydrogenase; 45.2 41 0.0014 26.7 5.8 53 63-120 71-123 (318)
156 3t6k_A Response regulator rece 44.8 63 0.0021 21.1 8.0 81 3-121 5-88 (136)
157 3uhf_A Glutamate racemase; str 44.1 82 0.0028 24.5 7.2 68 33-118 26-93 (274)
158 3me7_A Putative uncharacterize 43.9 58 0.002 22.7 5.9 64 66-139 29-92 (170)
159 2xxj_A L-LDH, L-lactate dehydr 43.9 32 0.0011 27.2 4.9 50 63-120 66-118 (310)
160 3fi9_A Malate dehydrogenase; s 43.6 23 0.00078 28.7 4.0 49 63-119 75-127 (343)
161 2duw_A Putative COA-binding pr 43.5 78 0.0027 21.8 8.3 105 3-140 14-121 (145)
162 3fxt_A Nucleoside diphosphate- 43.5 33 0.0011 23.3 4.2 52 62-123 29-80 (113)
163 1o6z_A MDH, malate dehydrogena 43.1 51 0.0017 25.8 6.0 49 63-119 69-120 (303)
164 3abz_A Beta-glucosidase I; gly 42.8 23 0.00079 32.4 4.3 57 63-123 572-628 (845)
165 2kln_A Probable sulphate-trans 42.4 49 0.0017 22.0 5.1 60 45-122 29-91 (130)
166 3lte_A Response regulator; str 41.6 67 0.0023 20.5 8.9 79 3-119 7-88 (132)
167 2vws_A YFAU, 2-keto-3-deoxy su 41.6 23 0.0008 27.4 3.7 49 65-117 168-216 (267)
168 1y6j_A L-lactate dehydrogenase 41.5 51 0.0017 26.1 5.8 49 63-120 73-125 (318)
169 3bul_A Methionine synthase; tr 41.1 1E+02 0.0035 26.9 7.9 67 31-122 124-190 (579)
170 4aj2_A L-lactate dehydrogenase 40.9 46 0.0016 26.7 5.4 50 63-120 86-138 (331)
171 1xrs_B D-lysine 5,6-aminomutas 40.7 93 0.0032 24.2 7.0 69 33-124 157-227 (262)
172 3ezx_A MMCP 1, monomethylamine 40.1 1.1E+02 0.0038 22.6 8.2 67 31-122 118-188 (215)
173 3nvb_A Uncharacterized protein 39.6 28 0.00094 28.8 3.9 103 4-120 24-129 (387)
174 5mdh_A Malate dehydrogenase; o 39.6 77 0.0026 25.3 6.6 52 63-119 78-130 (333)
175 1p6q_A CHEY2; chemotaxis, sign 39.0 73 0.0025 20.2 6.9 22 100-121 68-91 (129)
176 1p2f_A Response regulator; DRR 38.5 63 0.0022 23.1 5.6 81 1-121 1-81 (220)
177 3m2p_A UDP-N-acetylglucosamine 38.4 1.3E+02 0.0044 22.8 7.7 48 63-118 61-108 (311)
178 3max_A HD2, histone deacetylas 38.0 32 0.0011 28.2 4.1 55 62-124 245-299 (367)
179 2ayx_A Sensor kinase protein R 37.6 1.2E+02 0.0042 22.4 9.3 84 3-124 130-214 (254)
180 4a69_A Histone deacetylase 3,; 37.5 33 0.0011 28.3 4.1 55 62-124 246-300 (376)
181 2p10_A MLL9387 protein; putati 37.5 1.5E+02 0.0052 23.4 8.9 60 62-125 181-240 (286)
182 3sc6_A DTDP-4-dehydrorhamnose 36.8 77 0.0026 23.7 6.0 98 1-119 4-106 (287)
183 3c3m_A Response regulator rece 36.4 87 0.003 20.3 8.0 81 3-121 4-87 (138)
184 2x0j_A Malate dehydrogenase; o 36.4 59 0.002 25.6 5.3 50 63-120 68-120 (294)
185 2zqz_A L-LDH, L-lactate dehydr 35.5 68 0.0023 25.5 5.6 50 63-120 75-127 (326)
186 2r25_B Osmosensing histidine p 35.2 90 0.0031 20.1 6.5 88 2-121 2-91 (133)
187 1i3c_A Response regulator RCP1 35.2 96 0.0033 20.4 7.4 89 3-121 9-101 (149)
188 1a5z_A L-lactate dehydrogenase 34.8 72 0.0025 25.1 5.7 49 63-119 66-117 (319)
189 2yvq_A Carbamoyl-phosphate syn 34.7 43 0.0015 23.3 3.8 40 99-140 86-129 (143)
190 3ew8_A HD8, histone deacetylas 34.0 46 0.0016 27.5 4.4 55 62-124 254-308 (388)
191 3k7i_B IHH, HHG-2, indian hedg 33.3 41 0.0014 24.9 3.5 67 39-118 46-116 (187)
192 3qz6_A HPCH/HPAI aldolase; str 33.2 47 0.0016 25.6 4.2 53 65-121 166-218 (261)
193 3d0o_A L-LDH 1, L-lactate dehy 33.1 58 0.002 25.7 4.8 52 63-120 73-125 (317)
194 1guz_A Malate dehydrogenase; o 32.8 1E+02 0.0035 24.1 6.2 50 63-120 68-120 (310)
195 3luf_A Two-component system re 32.3 78 0.0027 23.7 5.3 12 2-13 4-15 (259)
196 3dzd_A Transcriptional regulat 32.1 1.9E+02 0.0066 23.0 9.0 82 3-122 1-83 (368)
197 3sr0_A Adenylate kinase; phosp 32.0 43 0.0015 24.7 3.7 29 113-141 2-30 (206)
198 7mdh_A Protein (malate dehydro 31.7 84 0.0029 25.8 5.6 50 63-120 107-160 (375)
199 2i6t_A Ubiquitin-conjugating e 31.6 75 0.0026 25.0 5.2 48 63-119 76-126 (303)
200 3zxn_A RSBS, anti-sigma-factor 31.6 1.1E+02 0.0036 20.4 5.4 60 45-121 26-85 (123)
201 2qz4_A Paraplegin; AAA+, SPG7, 30.6 1.4E+02 0.005 21.7 6.6 51 90-140 10-68 (262)
202 3llu_A RAS-related GTP-binding 30.6 1.3E+02 0.0046 20.9 6.2 42 64-118 95-136 (196)
203 3n0r_A Response regulator; sig 30.5 1.5E+02 0.0052 22.7 6.8 82 2-120 160-242 (286)
204 1ldn_A L-lactate dehydrogenase 30.0 1.2E+02 0.0042 23.7 6.2 51 63-119 73-124 (316)
205 3b2n_A Uncharacterized protein 29.6 49 0.0017 21.4 3.4 23 100-122 66-88 (133)
206 1xhf_A DYE resistance, aerobic 29.6 1E+02 0.0036 19.2 8.3 81 2-121 3-84 (123)
207 1dxe_A 2-dehydro-3-deoxy-galac 29.2 42 0.0014 25.7 3.3 49 65-117 168-216 (256)
208 3pfi_A Holliday junction ATP-d 29.1 1.8E+02 0.0062 22.3 7.1 50 91-140 34-84 (338)
209 2qzj_A Two-component response 28.9 1.2E+02 0.0041 19.6 7.7 81 2-121 4-85 (136)
210 3n70_A Transport activator; si 28.2 1.2E+02 0.0042 20.3 5.4 44 95-140 10-56 (145)
211 1ccw_A Protein (glutamate muta 27.7 1.4E+02 0.0049 20.2 10.2 65 31-120 29-94 (137)
212 1lld_A L-lactate dehydrogenase 27.3 1.2E+02 0.004 23.4 5.7 48 63-118 74-124 (319)
213 4dgh_A Sulfate permease family 27.3 1.1E+02 0.0037 20.2 4.9 59 45-122 34-92 (130)
214 3tlx_A Adenylate kinase 2; str 27.3 1.5E+02 0.0051 22.0 6.1 31 111-141 29-59 (243)
215 1jbe_A Chemotaxis protein CHEY 27.0 95 0.0033 19.5 4.4 23 100-122 66-90 (128)
216 1d2n_A N-ethylmaleimide-sensit 27.0 1.4E+02 0.0047 22.3 5.9 49 92-140 43-93 (272)
217 2c7f_A Alpha-L-arabinofuranosi 26.9 79 0.0027 26.8 4.8 53 65-121 173-225 (513)
218 4dgf_A Sulfate transporter sul 26.9 1.3E+02 0.0045 20.0 5.2 45 63-122 50-95 (135)
219 1b93_A Protein (methylglyoxal 26.7 90 0.0031 22.2 4.4 39 100-140 73-117 (152)
220 1qoz_A AXE, acetyl xylan ester 26.5 68 0.0023 23.8 3.9 27 92-118 62-88 (207)
221 2xz9_A Phosphoenolpyruvate-pro 26.5 43 0.0015 26.8 3.0 50 67-118 197-254 (324)
222 1g66_A Acetyl xylan esterase I 26.4 67 0.0023 23.8 3.9 29 90-118 60-88 (207)
223 3zyz_A Beta-D-glucoside glucoh 26.2 1.4E+02 0.0046 26.7 6.4 60 63-124 426-488 (713)
224 1y7t_A Malate dehydrogenase; N 26.0 1.5E+02 0.0053 23.0 6.2 49 63-119 79-131 (327)
225 2y2w_A Arabinofuranosidase; hy 25.9 97 0.0033 26.9 5.3 55 63-121 203-257 (574)
226 1izc_A Macrophomate synthase i 25.8 40 0.0014 27.2 2.7 53 65-121 200-257 (339)
227 1qw9_A Arabinosidase, alpha-L- 25.8 90 0.0031 26.3 5.0 52 66-121 166-217 (502)
228 3t1o_A Gliding protein MGLA; G 25.3 1.6E+02 0.0056 20.0 6.3 69 63-141 96-170 (198)
229 3qha_A Putative oxidoreductase 25.3 2.3E+02 0.0078 21.6 8.5 9 65-73 71-79 (296)
230 3gi1_A LBP, laminin-binding pr 25.1 1.2E+02 0.004 23.5 5.3 43 94-140 213-255 (286)
231 3cx3_A Lipoprotein; zinc-bindi 25.0 77 0.0026 24.5 4.1 42 95-140 212-253 (284)
232 1qo0_D AMIR; binding protein, 24.5 1.6E+02 0.0054 20.4 5.6 21 101-121 69-89 (196)
233 3n1g_B Desert hedgehog protein 24.4 60 0.002 23.7 3.1 67 39-118 38-108 (170)
234 3kp1_A D-ornithine aminomutase 24.1 2.7E+02 0.0094 25.0 7.7 67 32-121 633-702 (763)
235 2lbw_A H/ACA ribonucleoprotein 24.0 1.7E+02 0.0057 19.6 5.9 41 98-140 25-67 (121)
236 1oeg_A Apolipoprotein E; siali 24.0 38 0.0013 16.8 1.4 19 91-109 3-21 (26)
237 3pfb_A Cinnamoyl esterase; alp 23.9 1.3E+02 0.0043 21.5 5.1 31 88-118 95-125 (270)
238 1k66_A Phytochrome response re 23.8 72 0.0025 20.7 3.4 23 100-122 79-103 (149)
239 2czq_A Cutinase-like protein; 23.7 83 0.0028 23.4 3.9 29 92-120 57-85 (205)
240 2x0s_A Pyruvate phosphate diki 23.6 87 0.003 28.9 4.7 31 93-123 832-862 (913)
241 1lv7_A FTSH; alpha/beta domain 23.5 2E+02 0.0069 21.1 6.2 51 91-141 17-75 (257)
242 1obb_A Maltase, alpha-glucosid 23.5 1.7E+02 0.0057 24.8 6.2 30 91-120 125-154 (480)
243 4hty_A Cellulase; (alpha/beta) 23.4 2.5E+02 0.0085 22.1 7.0 52 63-118 177-228 (359)
244 1vbg_A Pyruvate,orthophosphate 23.1 77 0.0026 29.1 4.2 33 92-124 811-843 (876)
245 1t2d_A LDH-P, L-lactate dehydr 23.0 2.4E+02 0.0082 22.1 6.8 55 63-120 71-128 (322)
246 3hh8_A Metal ABC transporter s 23.0 1.1E+02 0.0037 23.9 4.6 42 95-140 218-259 (294)
247 3qpa_A Cutinase; alpha-beta hy 22.9 97 0.0033 23.0 4.1 31 90-120 75-105 (197)
248 2bib_A CBPE, teichoic acid pho 22.8 1.2E+02 0.0041 25.5 5.3 61 3-76 196-257 (547)
249 3qpd_A Cutinase 1; alpha-beta 22.7 99 0.0034 22.7 4.1 30 90-119 71-100 (187)
250 1tib_A Lipase; hydrolase(carbo 22.7 1.1E+02 0.0037 23.4 4.6 27 92-118 118-144 (269)
251 1mv8_A GMD, GDP-mannose 6-dehy 22.7 1.5E+02 0.0052 24.2 5.8 54 64-124 76-129 (436)
252 2v6b_A L-LDH, L-lactate dehydr 22.6 1.6E+02 0.0055 22.8 5.6 52 63-119 66-117 (304)
253 2pl1_A Transcriptional regulat 22.6 72 0.0025 19.9 3.1 23 100-122 61-83 (121)
254 3umf_A Adenylate kinase; rossm 22.5 78 0.0027 23.6 3.6 32 110-141 27-59 (217)
255 3h4m_A Proteasome-activating n 22.5 2.4E+02 0.0082 20.9 6.6 50 91-140 22-80 (285)
256 3llo_A Prestin; STAS domain, c 22.4 1.4E+02 0.0047 20.0 4.7 25 95-121 82-106 (143)
257 1ur5_A Malate dehydrogenase; o 22.1 1.1E+02 0.0038 23.9 4.6 52 63-120 69-121 (309)
258 4ezb_A Uncharacterized conserv 22.0 2.8E+02 0.0095 21.5 7.4 13 63-75 86-98 (317)
259 4gbj_A 6-phosphogluconate dehy 21.8 2.8E+02 0.0095 21.4 8.6 35 111-145 90-124 (297)
260 3hws_A ATP-dependent CLP prote 21.6 2.4E+02 0.0081 22.1 6.6 32 110-141 50-81 (363)
261 1oef_A Apolipoprotein E; glyco 21.5 82 0.0028 15.1 2.8 19 90-108 6-24 (26)
262 1pzg_A LDH, lactate dehydrogen 21.5 1.7E+02 0.0058 23.1 5.6 55 63-120 77-134 (331)
263 2hjr_A Malate dehydrogenase; m 21.4 1.9E+02 0.0064 22.8 5.9 49 63-119 81-132 (328)
264 1hyh_A L-hicdh, L-2-hydroxyiso 21.4 1.2E+02 0.004 23.5 4.6 53 63-119 68-123 (309)
265 1ny5_A Transcriptional regulat 21.4 1.4E+02 0.0047 24.1 5.2 39 63-120 43-81 (387)
266 2xw6_A MGS, methylglyoxal synt 21.3 1.3E+02 0.0044 20.8 4.3 39 100-140 65-109 (134)
267 3trf_A Shikimate kinase, SK; a 21.1 1.2E+02 0.0041 20.9 4.3 30 112-141 6-35 (185)
268 1a3w_A Pyruvate kinase; allost 20.9 1E+02 0.0036 26.3 4.4 38 69-116 259-296 (500)
269 2a6q_A Antitoxin YEFM; YEFM, a 20.9 80 0.0027 19.6 2.9 20 89-108 7-26 (86)
270 3mfq_A TROA, high-affinity zin 20.9 1.8E+02 0.0062 22.4 5.6 44 95-140 198-242 (282)
271 2c9o_A RUVB-like 1; hexameric 20.9 2.6E+02 0.0091 22.8 6.9 50 91-140 42-94 (456)
272 3d55_A Antitoxin, uncharacteri 20.8 81 0.0028 19.9 2.9 20 89-108 3-22 (91)
273 1sgj_A Citrate lyase, beta sub 20.7 1.6E+02 0.0055 22.6 5.2 47 64-114 143-189 (284)
274 3g0o_A 3-hydroxyisobutyrate de 20.7 2.3E+02 0.0077 21.7 6.1 12 63-74 63-74 (303)
275 1gvn_B Zeta; postsegregational 20.6 2.9E+02 0.0098 21.1 7.2 53 89-141 7-65 (287)
276 1pq4_A Periplasmic binding pro 20.5 1.5E+02 0.0052 22.9 5.1 42 95-140 223-264 (291)
277 2prs_A High-affinity zinc upta 20.5 1.2E+02 0.0041 23.3 4.4 42 95-140 209-250 (284)
278 3m6m_D Sensory/regulatory prot 20.4 1.9E+02 0.0064 18.8 8.3 53 3-74 15-68 (143)
279 1w25_A Stalked-cell differenti 20.4 3.4E+02 0.011 21.8 7.8 80 3-120 2-84 (459)
280 2y7e_A 3-keto-5-aminohexanoate 20.3 97 0.0033 24.3 3.8 38 36-78 84-121 (282)
No 1
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=6.2e-26 Score=177.68 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=125.2
Q ss_pred CceEEEEecccCccccCC---------CChHHHHHHHHcccCcEEEcccCCcchh----------hHHHhhcccCCCCCC
Q 030474 2 RPQIVLFGDSITQQSFGS---------AGWGAALADAYCRKADVLLRGYGGYNTR----------WALFLLHHIFPLDNS 62 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~---------~~w~~~l~~~l~~~~~v~N~G~~G~ts~----------~~l~~l~~~~~~~~~ 62 (177)
.++|+|+|||||+ |++. .+|+..|++.+..++.|+|.|++|.|+. ..+.++++.+. .
T Consensus 23 ~~~I~~lGDSit~-G~~~~~~~~~~~~~~w~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~l~~~l~---~ 98 (232)
T 3dci_A 23 MKTVLAFGDSLTW-GADPATGLRHPVEHRWPDVLEAELAGKAKVHPEGLGGRTTCYDDHAGPACRNGARALEVALS---C 98 (232)
T ss_dssp CEEEEEEESHHHH-TBCTTTCCBCCGGGSHHHHHHHHHTTSEEEEEEECTTCBSSCCCCSSSSCCBHHHHHHHHHH---H
T ss_pred CCEEEEEECcccc-CCCCCCcccCCcCCccHHHHHHHhCCCCeEEEcccCCccccccCcccccchhHHHHHHHHHh---h
Confidence 4689999999998 5542 3899999999977899999999999987 77888887664 3
Q ss_pred CCC-cEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-----CCCEEEEEcCCCCChh-----------
Q 030474 63 NPP-VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-----PIMLVVLITPPPVDED----------- 125 (177)
Q Consensus 63 ~~p-d~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~-----p~~~vil~tp~p~~~~----------- 125 (177)
.+| |+|+|++|+||+.... ..++++|.+++++||+.+++.. |+++|++++|+|+.+.
T Consensus 99 ~~p~d~VvI~~GtND~~~~~------~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p~~~~~~~~~~~~~~~~~ 172 (232)
T 3dci_A 99 HMPLDLVIIMLGTNDIKPVH------GGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAPPPCVAGPGGEPAGGRDI 172 (232)
T ss_dssp HCSCSEEEEECCTTTTSGGG------TSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEECCCCCCCTTSSCGGGCCH
T ss_pred CCCCCEEEEEeccCCCcccc------CCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCcccCcccccccHH
Confidence 577 9999999999998642 2489999999999999999987 8999999999986431
Q ss_pred -------HHHHHHHHhCCCceeecccCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 126 -------GRMEYAKYVNSSPYINCFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 126 -------~~~~~~a~~~~vp~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
...+.+|++.+++|||.. .....+..|| .||+..+|-.+.+
T Consensus 173 ~~~~~~~~~~~~~a~~~~v~~iD~~--~~~~~~~~Dg-----vHpn~~G~~~~A~ 220 (232)
T 3dci_A 173 EQSMRLAPLYRKLAAELGHHFFDAG--SVASASPVDG-----VHLDASATAAIGR 220 (232)
T ss_dssp HHHTTHHHHHHHHHHHHTCEEEEGG--GTCCCCTTTS-----SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCeEEcch--HhcCcccCCC-----CCcCHHHHHHHHH
Confidence 123456778999999832 2223467899 8999999977654
No 2
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=99.93 E-value=1.3e-25 Score=168.91 Aligned_cols=154 Identities=21% Similarity=0.293 Sum_probs=123.3
Q ss_pred CCceEEEEecccCccccCC---CChHHHHHHHHc---ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 1 MRPQIVLFGDSITQQSFGS---AGWGAALADAYC---RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~---~~w~~~l~~~l~---~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|.++|+++|||+|+ |++. .+|+..+++.+. ..+.++|.|++|.++.+.+.++++.+. ..+||+|+|++|+
T Consensus 1 ~~~~i~~~GDSit~-G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ 76 (185)
T 3hp4_A 1 MDNTILILGDXLSA-AYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLE---QYEPTHVLIELGA 76 (185)
T ss_dssp -CEEEEEEECTTTT-TTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHH---HHCCSEEEEECCH
T ss_pred CCCeEEEECCcccc-cCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHh---hcCCCEEEEEeec
Confidence 67899999999998 5542 489999998874 357899999999999999999988765 3589999999999
Q ss_pred ccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC--CC-CChhH------HHHHHHHhCCCceeecc--
Q 030474 75 NDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP--PP-VDEDG------RMEYAKYVNSSPYINCF-- 143 (177)
Q Consensus 75 ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp--~p-~~~~~------~~~~~a~~~~vp~id~~-- 143 (177)
||.... .++++|.++++++++.++++ +++|+++++ || ..... ..+.++++++++|+|..
T Consensus 77 ND~~~~--------~~~~~~~~~~~~~i~~~~~~--~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~~ 146 (185)
T 3hp4_A 77 NDGLRG--------FPVKKMQTNLTALVKKSQAA--NAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFML 146 (185)
T ss_dssp HHHHTT--------CCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTTT
T ss_pred ccCCCC--------cCHHHHHHHHHHHHHHHHHc--CCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchhh
Confidence 998653 68999999999999999998 688999984 33 33321 22456778899999733
Q ss_pred -cCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 144 -LGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 144 -l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
....++++..|| .||+..+|-.+.+
T Consensus 147 ~~~~~~~~~~~Dg-----~Hpn~~G~~~~a~ 172 (185)
T 3hp4_A 147 DIAGKSDLMQNDS-----LHPNKKAQPLIRD 172 (185)
T ss_dssp TTTTCGGGBCTTS-----SSBCTTHHHHHHH
T ss_pred hcCCCcccccCCC-----CCcCHHHHHHHHH
Confidence 334677889999 8999999976643
No 3
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=99.93 E-value=1.5e-25 Score=172.35 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=122.1
Q ss_pred CCceEEEEecccCccccCC-------------CChHHHHHHHHcccCcEEEcccCCcchh---------hHHHhhcccCC
Q 030474 1 MRPQIVLFGDSITQQSFGS-------------AGWGAALADAYCRKADVLLRGYGGYNTR---------WALFLLHHIFP 58 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~-------------~~w~~~l~~~l~~~~~v~N~G~~G~ts~---------~~l~~l~~~~~ 58 (177)
|.++|+|+|||||+ |++. .+|+..|++.+..++.++|.|++|.|+. ..+.++++.+.
T Consensus 1 ~~~~i~~~GDSit~-G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~l~~~l~ 79 (216)
T 2q0q_A 1 MAKRILCFGDSLTW-GWVPVEDGAPTERFAPDVRWTGVLAQQLGADFEVIEEGLSARTTNIDDPTDPRLNGASYLPSCLA 79 (216)
T ss_dssp -CEEEEEEESHHHH-TBCCCTTCCCBCBCCTTTSHHHHHHHHHCTTEEEEEEECTTCBSSCCBTTBTTCBHHHHHHHHHH
T ss_pred CCceEEEEecCccc-CcCCCCCccccccCCcccchHHHHHHHhCCCCeEEecCcCcccccccCCccccccHHHHHHHHHH
Confidence 78999999999997 5442 3799999999877789999999999988 56777777654
Q ss_pred CCCCCCC-cEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-------CCCEEEEEcCCCCChh-----
Q 030474 59 LDNSNPP-VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-------PIMLVVLITPPPVDED----- 125 (177)
Q Consensus 59 ~~~~~~p-d~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~-------p~~~vil~tp~p~~~~----- 125 (177)
..+| |+|+|++|+||..... ..+++++.++++++|+.++++. |+++|++++|||....
T Consensus 80 ---~~~p~d~vvi~~G~ND~~~~~------~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~~~~~~ 150 (216)
T 2q0q_A 80 ---THLPLDLVIIMLGTNDTKAYF------RRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPMPHPWF 150 (216)
T ss_dssp ---HHCSCSEEEEECCTGGGSGGG------CCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCCCSHHH
T ss_pred ---hCCCCCEEEEEecCcccchhc------CCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEeCCCcCcccCCcc
Confidence 2466 9999999999987521 3689999999999999999998 8899999999887641
Q ss_pred --------H-------HHHHHHHhCCCceee--cccCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 126 --------G-------RMEYAKYVNSSPYIN--CFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 126 --------~-------~~~~~a~~~~vp~id--~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
. +.+.++++.+++|+| ..+. .+..|| .||...+|-.+.+
T Consensus 151 ~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~----~~~~Dg-----~Hpn~~G~~~~a~ 206 (216)
T 2q0q_A 151 QLIFEGGEQKTTELARVYSALASFMKVPFFDAGSVIS----TDGVDG-----IHFTEANNRDLGV 206 (216)
T ss_dssp HHHTTTHHHHHTTHHHHHHHHHHHHTCCEEEGGGTCC----CCSTTS-----SSCCHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHcCCcEEchhHhcc----cCCCCc-----cCcCHHHHHHHHH
Confidence 0 123456778999998 2222 266788 8999999976654
No 4
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.7e-25 Score=172.98 Aligned_cols=149 Identities=21% Similarity=0.195 Sum_probs=115.4
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 82 (177)
++|+|+|||||+ ||...+.+.+. ...|+|+|+||+||.+++.|+++.+. ..+||+|+|++|+||+....
T Consensus 27 ~~Iv~~GDSit~------gw~~~~~~~~~-~~~viN~Gi~G~tt~~~l~r~~~~v~---~~~Pd~vvi~~G~ND~~~~~- 95 (209)
T 4hf7_A 27 KRVVFMGNXITE------GWVRTHPDFFK-TNGYIGRGISGQTSYQFLLRFREDVI---NLSPALVVINAGTNDVAENT- 95 (209)
T ss_dssp CCEEEEESHHHH------HHHHHCHHHHH-HHTEEEEECTTCCHHHHHHHHHHHTG---GGCCSEEEECCCHHHHTTSS-
T ss_pred CeEEEECcHHHh------ChhHHHHHhcC-CCCEEEeccCcccHHHHHHHHHHHHH---hcCCCEEEEEeCCCcCcccc-
Confidence 579999999998 48776666653 45799999999999999999988665 47899999999999986532
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-----------------HHHHHHHHhCCCceee--cc
Q 030474 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-----------------GRMEYAKYVNSSPYIN--CF 143 (177)
Q Consensus 83 ~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-----------------~~~~~~a~~~~vp~id--~~ 143 (177)
...+.+++.+|+++|++.+++. +++|++++++|..+. .+.+.+|++++++||| ..
T Consensus 96 ----~~~~~~~~~~~l~~ii~~~~~~--~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~~iD~~~~ 169 (209)
T 4hf7_A 96 ----GAYNEDYTFGNIASMAELAKAN--KIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIPFVNYYQP 169 (209)
T ss_dssp ----SSCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCCEECSHHH
T ss_pred ----ccccHHHHHHHHHHhhHHHhcc--CceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCeEeecHHH
Confidence 2357899999999999999875 799999999886431 0123457789999997 22
Q ss_pred cC-CC----CCCCCCCCccceeecccchhhhhhhh
Q 030474 144 LG-RP----PKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 144 l~-~~----~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+. .. ...+..|| .||+..+|-.+.+
T Consensus 170 ~~~~~~~~~~~~~~~Dg-----lHpn~~Gy~~~a~ 199 (209)
T 4hf7_A 170 MVVGENKALNPQYTKDG-----VHPTGEGYDIMEA 199 (209)
T ss_dssp HEETTTTEECGGGBSSS-----SSBCHHHHHHHHH
T ss_pred HhcccccccCcccCCCC-----CCCCHHHHHHHHH
Confidence 21 11 23456788 8999999976543
No 5
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=7e-25 Score=167.59 Aligned_cols=148 Identities=17% Similarity=0.114 Sum_probs=118.7
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcc-hhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYN-TRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~t-s~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.|||+|+|||||+ ||...+++.|.....|.|.|.+|.+ +...++++++.+. ..+||+|+|++|+||..
T Consensus 20 ~prVl~iGDSit~------G~~~~l~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~pd~Vvi~~G~ND~~-- 88 (200)
T 4h08_A 20 LPHVLLIGNSITR------GYYGKVEAALKEKAYVGRLSNSKSVGDPALIEELAVVLK---NTKFDVIHFNNGLHGFD-- 88 (200)
T ss_dssp SCEEEEEESHHHH------HHHHHHHHHTTTTCEEEEEEESCCTTCHHHHHHHHHHHH---HSCCSEEEECCCSSCTT--
T ss_pred CCeEEEEchhHHh------hhHHHHHHHhccCCeEEEEeccCCccHHHHHHHHHHHHh---cCCCCeEEEEeeeCCCC--
Confidence 4799999999997 5998999988777889999988654 4556677777654 47899999999999964
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-----------------HHHHHHHHhCCCceee--
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-----------------GRMEYAKYVNSSPYIN-- 141 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-----------------~~~~~~a~~~~vp~id-- 141 (177)
.++++|.+|+++||+++|+..|+++||+++++|+... .+.+.++++++++|+|
T Consensus 89 --------~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 160 (200)
T 4h08_A 89 --------YTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIEVNDLW 160 (200)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTCEEECHH
T ss_pred --------CCHHHHHHHHHHHHHHHhhhCCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhhcceEEEecH
Confidence 5899999999999999999999999999998876321 0123457789999997
Q ss_pred cccC-CCCCCCCCCCccceeecccchhhhhhhh
Q 030474 142 CFLG-RPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 142 ~~l~-~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..+. ....++..|| .||+..+|-.+.+
T Consensus 161 ~~~~~~~~~~~~~Dg-----~Hpn~~Gy~~~A~ 188 (200)
T 4h08_A 161 KVVIDHPEYYAGGDG-----THPIDAGYSALAN 188 (200)
T ss_dssp HHHTTCGGGTTTSCS-----SSCCHHHHHHHHH
T ss_pred HhHhcCHHHhcCCCC-----CCCCHHHHHHHHH
Confidence 3333 4456788899 8999999987654
No 6
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=99.91 E-value=1.1e-24 Score=165.15 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=122.1
Q ss_pred CceEEEEecccCccccCC---CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 2 RPQIVLFGDSITQQSFGS---AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~---~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
+++|+|+|||+|+ |++. .+|+..+++.+...+.++|.|++|.++.+.+.++++.+. ..+||+|+|++|+||..
T Consensus 1 ~~~i~~~GDSit~-g~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~Vii~~G~ND~~ 76 (190)
T 1ivn_A 1 ADTLLILGDSLSA-GYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLK---QHQPRWVLVELGGNDGL 76 (190)
T ss_dssp CEEEEEEECHHHH-CSSSCGGGSHHHHHHHHC-CCEEEEECCCTTCCHHHHHHHHHHHHH---HHCCSEEEEECCTTTTS
T ss_pred CCcEEEEecCccc-CCCCCCCcCHHHHHHHHhccCcEEEecCCCCchHHHHHHHHHHHHH---hcCCCEEEEEeeccccc
Confidence 4799999999998 4443 389999999886668999999999999999999987664 35799999999999987
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC-CCC--Chh------HHHHHHHHhCCCceeec---ccCC
Q 030474 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP-PPV--DED------GRMEYAKYVNSSPYINC---FLGR 146 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp-~p~--~~~------~~~~~~a~~~~vp~id~---~l~~ 146 (177)
.. .++++|.++++++++.++++ +++|+++++ .|. ... ...+.++++++++|+|. ....
T Consensus 77 ~~--------~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~~~ 146 (190)
T 1ivn_A 77 RG--------FQPQQTEQTLRQILQDVKAA--NAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYL 146 (190)
T ss_dssp SS--------CCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCTHHHHHT
T ss_pred cC--------CCHHHHHHHHHHHHHHHHHc--CCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccHHhhccC
Confidence 42 68999999999999999998 589999985 232 211 12245577889999983 2345
Q ss_pred CCCCCCCCCccceeecccchhhhhhhh
Q 030474 147 PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 147 ~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
.++|+..|| .||...+|-.+.+
T Consensus 147 ~~~~~~~Dg-----~Hpn~~G~~~~a~ 168 (190)
T 1ivn_A 147 KPQWMQDDG-----IHPNRDAQPFIAD 168 (190)
T ss_dssp CGGGBCTTS-----SSBCGGGHHHHHH
T ss_pred CchhhcCCC-----CCCCHHHHHHHHH
Confidence 678899999 8999999976644
No 7
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-24 Score=169.29 Aligned_cols=159 Identities=33% Similarity=0.507 Sum_probs=126.2
Q ss_pred CceEEEEecccCccccCC-----C----ChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEe
Q 030474 2 RPQIVLFGDSITQQSFGS-----A----GWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFF 72 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~-----~----~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~ 72 (177)
.++|+++|||||++|++. . +|+..|++.+..++.++|.|++|.++.+.+.++++.+.. ..+||+|+|++
T Consensus 3 ~~~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~--~~~pd~vvi~~ 80 (240)
T 3mil_A 3 YEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILPEILKH--ESNIVMATIFL 80 (240)
T ss_dssp CEEEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTTTEEEEEEECTTCCHHHHHHHHHHHHHH--CCCEEEEEEEC
T ss_pred cccEEEEccchhhhhcCcccccccchHhHHHHHHHHHhccceEEEecCcCcccHHHHHHHHHHHhcc--cCCCCEEEEEe
Confidence 469999999999866553 2 399999998877899999999999999999999876641 25899999999
Q ss_pred ccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHH-------------------------
Q 030474 73 GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGR------------------------- 127 (177)
Q Consensus 73 G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~------------------------- 127 (177)
|+||..... ....+.++|.++++++|+.+++. +++||+++|+|+....+
T Consensus 81 G~ND~~~~~----~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 154 (240)
T 3mil_A 81 GANDACSAG----PQSVPLPEFIDNIRQMVSLMKSY--HIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDA 154 (240)
T ss_dssp CTTTTSSSS----TTCCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHH
T ss_pred ecCcCCccC----CCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHHH
Confidence 999986421 23478999999999999999998 57999999999865421
Q ss_pred HHHHHHhCCCceee--cccC----CCCCCCCCCCccceeecccchhhhhhhh
Q 030474 128 MEYAKYVNSSPYIN--CFLG----RPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 128 ~~~~a~~~~vp~id--~~l~----~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
.+.++++.+++|+| ..+. ...+++..|| .||...+|-.+.+
T Consensus 155 ~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~~Dg-----~Hpn~~G~~~~a~ 201 (240)
T 3mil_A 155 LAKLANEEKVPFVALNKAFQQEGGDAWQQLLTDG-----LHFSGKGYKIFHD 201 (240)
T ss_dssp HHHHHHHTTCCEECHHHHHHHHHGGGGGGGBSSS-----SSBCHHHHHHHHH
T ss_pred HHHHHHHhCCeEEehHHHHhhcCCccHhhccCCC-----CCcCHHHHHHHHH
Confidence 12446678999997 2222 1246788899 8999999977654
No 8
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=99.91 E-value=6.6e-25 Score=172.76 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=117.0
Q ss_pred eEEEEecccCccccC---CCChHHHHHHHHcccCcEEEcccCCcchhhHHH--hhcccCCCCCCCCCcEEEEEecccccc
Q 030474 4 QIVLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWALF--LLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 4 ~I~~~GDSit~gg~~---~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~--~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
+|+|+|||+|+++.. ..+|+..|++.+. +.|+|+|++|.|+.+.++ ++++++.. ..++|+|+|++|+||..
T Consensus 2 ~I~~~GDS~t~g~~~~~~~~gw~~~l~~~l~--~~v~N~gi~G~tt~~~~~~~r~~~~l~~--~~~~d~ViI~~G~ND~~ 77 (233)
T 1k7c_A 2 TVYLAGDSTMAKNGGGSGTNGWGEYLASYLS--ATVVNDAVAGRSARSYTREGRFENIADV--VTAGDYVIVEFGHNDGG 77 (233)
T ss_dssp EEEEECCTTTSTTTTSTTCCCGGGGSGGGBS--SEEEECCCTTCCHHHHHHTTHHHHHHHH--CCTTCEEEECCCTTSCS
T ss_pred EEEEEecCCCcCCCCCCCCCCHHHHHHHhCC--ceEEecccCCccHHHHHHcccHHHHHhh--CCCCCEEEEEccCCCCC
Confidence 799999999985321 2489998887774 899999999999998774 67665541 13459999999999998
Q ss_pred ccCCCCC-----------------CccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-------------HHH
Q 030474 79 LFGRTSE-----------------RQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-------------GRM 128 (177)
Q Consensus 79 ~~~~~~~-----------------~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-------------~~~ 128 (177)
....... .+.++.++|++||++||+.+|+. +++|||++|+|.... .+.
T Consensus 78 ~~~~~~~r~~~~g~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~ 155 (233)
T 1k7c_A 78 SLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAK--GAKVILSSQTPNNPWETGTFVNSPTRFVEYA 155 (233)
T ss_dssp CGGGCCSCCCBSSSSSCEEEEEETTEEEEEEBHHHHHHHHHHHHHHT--TCEEEEECCCCCCTTTTSSCCCCCCHHHHHH
T ss_pred CcCCcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHC--CCEEEEECCCCccccCCCccccchHHHHHHH
Confidence 6420000 01234689999999999999987 689999999886421 234
Q ss_pred HHHHHhCCCceee--cccCC---------CCCCCCCCCccceeecccchhhhhhhh
Q 030474 129 EYAKYVNSSPYIN--CFLGR---------PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 129 ~~~a~~~~vp~id--~~l~~---------~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+.+|++++++||| ..+.. .+.++..|| .||+..+|-.+.+
T Consensus 156 ~~vA~~~~v~~iD~~~~~~~~~~~~g~~~~~~~~~~Dg-----iHpn~~G~~~iA~ 206 (233)
T 1k7c_A 156 ELAAEVAGVEYVDHWSYVDSIYETLGNATVNSYFPIDH-----THTSPAGAEVVAE 206 (233)
T ss_dssp HHHHHHHTCEEECHHHHHHHHHHHHCHHHHHHTCSSSS-----SCCCHHHHHHHHH
T ss_pred HHHHHHhCCeEEecHHHHHHHHHHhChhhhcccCCCCC-----CCCCHHHHHHHHH
Confidence 6678889999997 22211 134677899 9999999876644
No 9
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=99.90 E-value=7.2e-24 Score=165.27 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=120.5
Q ss_pred CceEEEEecccCccccC--CCChHHHHHHHHcccCcEEEcccCCcchh----hHHHhhcccCCCCCCCCCcEEEEEeccc
Q 030474 2 RPQIVLFGDSITQQSFG--SAGWGAALADAYCRKADVLLRGYGGYNTR----WALFLLHHIFPLDNSNPPVATTIFFGAN 75 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~--~~~w~~~l~~~l~~~~~v~N~G~~G~ts~----~~l~~l~~~~~~~~~~~pd~Vvi~~G~N 75 (177)
.++|+|+|||||+ |++ .++|+..|++.+ ....++|.|++|.++. +.+.++++ +. .+||+|+|++|+|
T Consensus 21 ~~~i~~lGDSit~-G~g~~~~~~~~~l~~~l-~~~~v~N~g~~G~t~~~~~~~~~~~~~~-~~----~~pd~Vii~~G~N 93 (232)
T 3dc7_A 21 FKRPAWLGDSITA-NNGLATVHYHDILAADW-DVERSDNLGISGSTIGSRYDAMAVRYQA-IP----EDADFIAVFGGVN 93 (232)
T ss_dssp CSSEEEEESTTTS-TTCSSSSCHHHHHHHHH-TCSCCEEEECTTCCSSTTSSCHHHHGGG-SC----TTCSEEEEECCHH
T ss_pred cceEEEEcccccc-cCCCCCCcHHHHHHHHh-CCceeEEeeeCCcccccChHHHHHHHHh-cC----CCCCEEEEEEecc
Confidence 3589999999998 443 238999998888 3458999999999998 47777766 33 6899999999999
Q ss_pred cccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-----------------H---HHHHHHHhC
Q 030474 76 DAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-----------------G---RMEYAKYVN 135 (177)
Q Consensus 76 D~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-----------------~---~~~~~a~~~ 135 (177)
|.......+.......++|..+++++|+.+++++|+++|++++|+|.... . ..+.++++.
T Consensus 94 D~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~ 173 (232)
T 3dc7_A 94 DYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADY 173 (232)
T ss_dssp HHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHc
Confidence 98763221222224667899999999999999999999999999875321 1 124557788
Q ss_pred CCceee--cccCC------CCCCCCCCCccceeecccchhhhhhhh
Q 030474 136 SSPYIN--CFLGR------PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 136 ~vp~id--~~l~~------~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
+++|+| ..+.. .+.++..|| .||+..+|-.+.+
T Consensus 174 ~v~~iD~~~~~~~~~~~~~~~~~~~~Dg-----vHpn~~G~~~iA~ 214 (232)
T 3dc7_A 174 GVPHLSLYRDAGMTFAIPAQAAIYSVDT-----LHPNNAGHRVIAR 214 (232)
T ss_dssp TCCEEEHHHHSSCCTTSHHHHHHHBSSS-----SSBCHHHHHHHHH
T ss_pred CCcEEecccccCCCccchhhhhhccCCC-----CCCCHHHHHHHHH
Confidence 999997 22221 235678888 8999999876543
No 10
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=99.90 E-value=6.7e-24 Score=159.77 Aligned_cols=152 Identities=30% Similarity=0.361 Sum_probs=118.5
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc--------cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR--------KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~--------~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
++|+++|||+|+ |++.++|+..+++.+.. .+.++|.|++|.++.+.+.++++.+. ..+||+|+|++|+
T Consensus 2 ~~i~~~GDS~t~-g~~~~~~~~~l~~~l~~~~~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ 77 (195)
T 1yzf_A 2 RKIVLFGDSITA-GYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVL---IEKPDEVVIFFGA 77 (195)
T ss_dssp EEEEEEESHHHH-CBTTBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHHHHHHHHTG---GGCCSEEEEECCT
T ss_pred CeEEEEcccccc-CcCCCChHHHHHHHHHHhccccCCceEEEEeCCCCCCCHHHHHHHHHHhhh---hcCCCEEEEEeec
Confidence 689999999998 56666787666655532 48899999999999999999988654 3789999999999
Q ss_pred ccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-------H-------HHHHHHHhCCCcee
Q 030474 75 NDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-------G-------RMEYAKYVNSSPYI 140 (177)
Q Consensus 75 ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-------~-------~~~~~a~~~~vp~i 140 (177)
||.... ...++++|.++++++++.++ +++|++++++|+... . ..+.++++.+++|+
T Consensus 78 ND~~~~------~~~~~~~~~~~l~~~i~~~~----~~~vi~~~~~p~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~i 147 (195)
T 1yzf_A 78 NDASLD------RNITVATFRENLETMIHEIG----SEKVILITPPYADSGRRPERPQTRIKELVKVAQEVGAAHNLPVI 147 (195)
T ss_dssp TTTCTT------SCCCHHHHHHHHHHHHHHHC----GGGEEEECCCCCCTTTCTTSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCcc------CCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCCCccccchhhhHHHHHHHHHHHHHHHHHhCCeEE
Confidence 998732 13689999999999999998 478999999987542 1 12344677899999
Q ss_pred e--cccC---CCCCCCCCCCccceeecccchhhhhhhh
Q 030474 141 N--CFLG---RPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 141 d--~~l~---~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
| ..+. ..+.++..|| .||...+|-.+.+
T Consensus 148 D~~~~~~~~~~~~~~~~~Dg-----~Hp~~~G~~~~a~ 180 (195)
T 1yzf_A 148 DLYKAMTVYPGTDEFLQADG-----LHFSQVGYELLGA 180 (195)
T ss_dssp CHHHHHHHSTTGGGGBCTTS-----SSBCHHHHHHHHH
T ss_pred ehHHHHhhcCCccccccCCC-----CCcCHHHHHHHHH
Confidence 7 2232 2235688898 8999999977654
No 11
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=99.90 E-value=1.4e-23 Score=160.33 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=122.4
Q ss_pred CceEEEEecccCccccC-----------CCChHHHHHHHHcc-----cCcEEEcccCCcchhhHHHhhcccCCCCCCCCC
Q 030474 2 RPQIVLFGDSITQQSFG-----------SAGWGAALADAYCR-----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPP 65 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~-----------~~~w~~~l~~~l~~-----~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~p 65 (177)
.++|+++|||||+|+.. ..+|+..+++.+.. ++.++|.|++|.++.+.+.++.+.+. ..+|
T Consensus 8 ~~~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~---~~~p 84 (216)
T 3rjt_A 8 GSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVM---ALQP 84 (216)
T ss_dssp TCEEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGGCCEEEECCCTTCCHHHHHHHHHHHTG---GGCC
T ss_pred CCEEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCCCeEEEECCCCCccHHHHHHHHHhHHh---hcCC
Confidence 35999999999985332 24899999888742 48899999999999999999876554 3689
Q ss_pred cEEEEEeccccccccCCC--CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh-------h------HHHHH
Q 030474 66 VATTIFFGANDAALFGRT--SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE-------D------GRMEY 130 (177)
Q Consensus 66 d~Vvi~~G~ND~~~~~~~--~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~-------~------~~~~~ 130 (177)
|+|+|++|+||....... ......++++|.++++++|+.++++ +++||+++|++... . ...+.
T Consensus 85 d~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~ 162 (216)
T 3rjt_A 85 DYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPR--VREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRD 162 (216)
T ss_dssp SEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGG--SSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhc--CCeEEEECCCcCCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999754210 0011467999999999999999999 79999999764331 1 11234
Q ss_pred HHHhCCCceee--ccc-----CCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 131 AKYVNSSPYIN--CFL-----GRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 131 ~a~~~~vp~id--~~l-----~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
++++++++|+| ..+ ...+.++..|| .||...+|-.+.+
T Consensus 163 ~a~~~~~~~vD~~~~~~~~~~~~~~~~~~~Dg-----~Hpn~~G~~~~a~ 207 (216)
T 3rjt_A 163 VAASEHVPFVDVQAEFDRLLAHLNTWVLAPDR-----VHPYLNGHLVIAR 207 (216)
T ss_dssp HHHHHTCCEECHHHHHHHHHTTSCHHHHCSSS-----SSCCHHHHHHHHH
T ss_pred HHHHcCCeEEEcHHHHHHHHhcCCCcccccCC-----cCCChHHHHHHHH
Confidence 56778999997 222 33467788899 8999999976543
No 12
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=99.89 E-value=4e-23 Score=158.65 Aligned_cols=148 Identities=23% Similarity=0.269 Sum_probs=117.0
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.++|+|+|||+|+| + +|... +.....+.|.|++|.++.+.+.++++.+. ..+||+|+|++|+||....
T Consensus 34 ~~~i~~~GDSit~g-~---~~~~~----l~~~~~v~n~g~~G~~~~~~~~~l~~~~~---~~~pd~vvi~~G~ND~~~~- 101 (214)
T 2hsj_A 34 EPNILFIGDSIVEY-Y---PLQEL----FGTSKTIVNRGIRGYQTGLLLENLDAHLY---GGAVDKIFLLIGTNDIGKD- 101 (214)
T ss_dssp CCSEEEEESHHHHT-C---CHHHH----HCSSSCEEEEECTTCCHHHHHHTGGGGCC---CSCCCEEEEECCHHHHHTT-
T ss_pred cCCEEEEecchhcC-C---CHHHH----cCCcceEEecCccchhHHHHHHHhhHHHH---hcCCCEEEEEEecCcCCcC-
Confidence 45899999999984 2 56544 44557889999999999999999988554 4789999999999998752
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH----------------H---HHHHHHhC-CCceee
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG----------------R---MEYAKYVN-SSPYIN 141 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~----------------~---~~~~a~~~-~vp~id 141 (177)
.+++++.++++++++.++++.|+++|++++++|+.... . .+.++++. +++|+|
T Consensus 102 -------~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~~iD 174 (214)
T 2hsj_A 102 -------VPVNEALNNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASAYMQVEFVP 174 (214)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHHHTTCCHHHHHHHHHHHHHHHTTCTTEEEEC
T ss_pred -------CCHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccccccccccccHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 68999999999999999999999999999999875321 1 13345667 899997
Q ss_pred --cccCC----CCCCCCCCCccceeecccchhhhhhhh
Q 030474 142 --CFLGR----PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 142 --~~l~~----~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..+.. ...++..|| .||...+|-.+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~Dg-----~Hp~~~G~~~~a~ 207 (214)
T 2hsj_A 175 VFDCLTDQAGQLKKEYTTDG-----LHLSIAGYQALSK 207 (214)
T ss_dssp CGGGSBCTTSSBCGGGBSSS-----SSBCHHHHHHHHH
T ss_pred hHHHHhCcCCchhhhccCCC-----CCCCHHHHHHHHH
Confidence 33333 245667788 8999999976654
No 13
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=99.89 E-value=3e-23 Score=157.84 Aligned_cols=148 Identities=22% Similarity=0.242 Sum_probs=115.4
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCC
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~ 83 (177)
+|+++|||||+ ||...+.+.+. +..++|.|++|.++.+.+.++++.+. ..+||+|+|++|+||.....
T Consensus 24 ~i~~~GDSit~------g~~~~~~~~~~-~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ND~~~~~-- 91 (204)
T 3p94_A 24 NVVFMGNSITD------GWWPADSTFFI-RNNFVDRGISGQTTSEMLVRFRQDVI---NLKPKAVVILAGINDIAHNN-- 91 (204)
T ss_dssp EEEEEESHHHH------THHHHCTTHHH-HHTEEEEECTTCCHHHHHHHHHHHTG---GGCEEEEEEECCHHHHTTTT--
T ss_pred eEEEEccchhh------cccchHHHhcc-cCceEEcccCcccHHHHHHHHHHHHH---hCCCCEEEEEeecCcccccc--
Confidence 89999999998 57665555443 34889999999999999999987654 36899999999999998632
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-------------H---HHHHHHHhCCCceee--cccC
Q 030474 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-------------G---RMEYAKYVNSSPYIN--CFLG 145 (177)
Q Consensus 84 ~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-------------~---~~~~~a~~~~vp~id--~~l~ 145 (177)
...++++|.++++++++.+++ |+++|++++++|.... . +.+.++++++++|+| ..+.
T Consensus 92 ---~~~~~~~~~~~~~~~i~~~~~--~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~~ 166 (204)
T 3p94_A 92 ---GVIALENVFGNLVSMAELAKA--NHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYHSAMK 166 (204)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHH--TTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEchhhhhh
Confidence 136899999999999999998 4899999999886431 1 124456778999997 3333
Q ss_pred CC----CCCCCCCCccceeecccchhhhhhhh
Q 030474 146 RP----PKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 146 ~~----~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
.. +.++..|| .||+..+|-.+.+
T Consensus 167 ~~~~~~~~~~~~Dg-----~Hp~~~G~~~~a~ 193 (204)
T 3p94_A 167 DERNGLPANLSKDG-----VHPTLEGYKIMEK 193 (204)
T ss_dssp CTTSSCCTTTBSSS-----SSBCHHHHHHHHH
T ss_pred cccccccccccCCC-----CCcCHHHHHHHHH
Confidence 22 34678888 8999999987654
No 14
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=99.88 E-value=8e-23 Score=157.92 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=119.2
Q ss_pred ceEEEEecccCccccCC---CChHHHHHHHHc---ccCcEEEcccCCcchhhHHHhhccc-CCCCCCCCCcEEEEEeccc
Q 030474 3 PQIVLFGDSITQQSFGS---AGWGAALADAYC---RKADVLLRGYGGYNTRWALFLLHHI-FPLDNSNPPVATTIFFGAN 75 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~---~~w~~~l~~~l~---~~~~v~N~G~~G~ts~~~l~~l~~~-~~~~~~~~pd~Vvi~~G~N 75 (177)
++|+|+|||||+ |++. .+|+..+++.+. .++.++|.|++|.++.+.+.++++. .......+||+|+|++|+|
T Consensus 21 ~~i~~lGDSit~-g~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~N 99 (218)
T 1vjg_A 21 IRICFVGDSFVN-GTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLN 99 (218)
T ss_dssp EEEEEEESHHHH-TTTCTTSCHHHHHHHHHHHHTTEEEEEEEEECTTCCHHHHHHHHHHHHHTTCCTTSEEEEEEECCHH
T ss_pred ceEEEEcccccc-CCCCCCCCCHHHHHHHHHHhcCCCeEEEeCCCCCcCHHHHHHHhHHhhhhhhccCCCCEEEEEecCC
Confidence 589999999998 4442 489999988874 3678999999999999999888763 3210125899999999999
Q ss_pred cccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC---ChhHH----------HHHHHHhCCCceee-
Q 030474 76 DAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV---DEDGR----------MEYAKYVNSSPYIN- 141 (177)
Q Consensus 76 D~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~---~~~~~----------~~~~a~~~~vp~id- 141 (177)
|..... .....++++|.++++++|+.+++. ++|++++++|+ ....+ .+.++++.+++|+|
T Consensus 100 D~~~~~---~~~~~~~~~~~~~l~~li~~l~~~---~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~ 173 (218)
T 1vjg_A 100 DTTLEN---GKPRVSIAETIKNTREILTQAKKL---YPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDV 173 (218)
T ss_dssp HHCEET---TEESSCHHHHHHHHHHHHHHHHHH---SCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECC
T ss_pred cchhhc---ccccCCHHHHHHHHHHHHHHHHHh---CcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEeh
Confidence 987310 011368999999999999999998 78999999998 43221 23456678999997
Q ss_pred -cccCCCCCC----CCCCCccceeecccchhhhhhhh
Q 030474 142 -CFLGRPPKY----PQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 142 -~~l~~~~~~----l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
..+...+.+ +..|| .||...+|-.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~Dg-----vHpn~~G~~~~A~ 205 (218)
T 1vjg_A 174 FPLLEKPSVWLHEAKANDG-----VHPQAGGYTEFAR 205 (218)
T ss_dssp TGGGSTTSSHHHHHHHTTS-----SCCCHHHHHHHHH
T ss_pred HHhhccchhhhhhccccCC-----CCCCHHHHHHHHH
Confidence 444444433 23577 8999999977654
No 15
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=99.88 E-value=1.4e-22 Score=162.51 Aligned_cols=162 Identities=20% Similarity=0.191 Sum_probs=118.2
Q ss_pred CceEEEEecccCccccCC-----CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccc
Q 030474 2 RPQIVLFGDSITQQSFGS-----AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND 76 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~-----~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND 76 (177)
.++|+|+|||||+| .+. .+| ..|++.+ ++.++|.|++|.|+.+++.++++.+. ....+||+|+|++|+||
T Consensus 26 ~~~iv~lGDSiT~G-~~~~~~~~~~w-~~l~~~l--~~~v~N~G~~G~tt~~~~~~~~~~l~-~~~~~pd~V~I~~G~ND 100 (274)
T 3bzw_A 26 GKKVGYIGDSITDP-NCYGDNIKKYW-DFLKEWL--GITPFVYGISGRQWDDVPRQAEKLKK-EHGGEVDAILVFMGTND 100 (274)
T ss_dssp TCEEEEEESTTTCT-TTTGGGCCCHH-HHHHHHH--CCEEEECCCTTCCGGGHHHHHHHHHH-HHTTTCCEEEEECCHHH
T ss_pred CCEEEEEecCcccC-CCCCCccCccH-HHHHHHh--CCeEEEeecCCCCHHHHHHHHHHHHh-ccCCCCCEEEEEEeccc
Confidence 35899999999984 431 478 8888877 58999999999999999988877542 01267999999999999
Q ss_pred ccccCCCCCC-------------------------ccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh-------
Q 030474 77 AALFGRTSER-------------------------QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE------- 124 (177)
Q Consensus 77 ~~~~~~~~~~-------------------------~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~------- 124 (177)
+......... +.+++++|.+++++||+.+|+++|+++||+++|+|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~lr~~~p~a~Iilitp~~~~~~~~~~~~ 180 (274)
T 3bzw_A 101 YNSSVPIGEWFTEQEEQVLSAHGEMKKMVTRKKRTPVMTQDTYRGRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKN 180 (274)
T ss_dssp HHTTCCCCCSEEEEEEEEEEEESSCCEEEEEEEEEECCCSSSHHHHHHHHHHHHHHHCTTSEEEEECCCCCCCEECSTTE
T ss_pred CcccCCCccccccchhhhhcccchhhcccccccccccCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccccccccccccc
Confidence 8764211000 13466789999999999999999999999999977531
Q ss_pred ---------------hHH---HHHHHHhCCCceee--cccCCCC------CCC---CCCCccceeecccchhhhhhhh
Q 030474 125 ---------------DGR---MEYAKYVNSSPYIN--CFLGRPP------KYP---QPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 125 ---------------~~~---~~~~a~~~~vp~id--~~l~~~~------~~l---~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
... .+.++++.+++||| ..+...+ .++ ..|| .||+..+|-.+.+
T Consensus 181 ~~p~~~~~~~~~~~~~~~n~~i~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~~~~~~~Dg-----~Hpn~~G~~~iA~ 253 (274)
T 3bzw_A 181 VQPDESYQNGCGEYIDAYVQAIKEAGNIWGIPVIDFNAVTGMNPMVEEQLIYFYDAGYDR-----LHPDTKGQERMAR 253 (274)
T ss_dssp EECCTTBCCTTSCCHHHHHHHHHHHHHHHTCCEECHHHHTCCCTTSGGGGGGEEETTTEE-----EEECHHHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHHHHHHHHHHcCCCEEcchhhhccCccccccccccccCCCCC-----cCCCHHHHHHHHH
Confidence 111 24456778999997 3333111 122 4666 9999999976543
No 16
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=99.87 E-value=9.2e-22 Score=153.59 Aligned_cols=147 Identities=18% Similarity=0.186 Sum_probs=112.4
Q ss_pred CceEEEEecccCccccCC-CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhccc-CCCCCCCCCcEEEEEeccccccc
Q 030474 2 RPQIVLFGDSITQQSFGS-AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHI-FPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~-~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~-~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
+.+|+|+|||+|+| ++. ..|...+ .+..++|.|++|.++.+.+.++++. +. ..+||+|+|++|+||..
T Consensus 38 ~~~i~~~GDSit~g-~~~~~~~~~~l-----~~~~v~n~g~~G~t~~~~~~~~~~~~l~---~~~pd~vvi~~G~ND~~- 107 (232)
T 1es9_A 38 EPEVVFIGDSLVQL-MHQCEIWRELF-----SPLHALNFGIGGDSTQHVLWRLENGELE---HIRPKIVVVWVGTNNHG- 107 (232)
T ss_dssp CCSEEEEESHHHHT-HHHHSCHHHHT-----GGGCEEEEECTTCCHHHHHHHHHTTTTT---TCCCSEEEEECCTTCTT-
T ss_pred CCCEEEEechHhhc-cCccccHHHHC-----CCCceEEeecccccHHHHHHHHhcCccc---cCCCCEEEEEeecCCCC-
Confidence 36899999999983 321 2454433 2578999999999999999998874 33 36899999999999986
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh---------HHH---HH-HHHhCCCceee--ccc
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED---------GRM---EY-AKYVNSSPYIN--CFL 144 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~---------~~~---~~-~a~~~~vp~id--~~l 144 (177)
.+.++|.++++++|+.+++++|+++|++++++|.... ..+ +. ++++.+++|+| ..+
T Consensus 108 ---------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~a~~~~v~~iD~~~~~ 178 (232)
T 1es9_A 108 ---------HTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGF 178 (232)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHHHSCTTEEEECCCCCC
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHCCCCeEEEecCCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCEEEeChHHh
Confidence 3789999999999999999999999999999987532 111 22 45678899997 333
Q ss_pred CC-----CCCCCCCCCccceeecccchhhhhhhh
Q 030474 145 GR-----PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 145 ~~-----~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
.. .+.|+ .|| .||...+|-.+.+
T Consensus 179 ~~~~g~~~~~~~-~Dg-----~Hpn~~G~~~~a~ 206 (232)
T 1es9_A 179 VHSDGTISHHDM-YDY-----LHLSRLGYTPVCR 206 (232)
T ss_dssp SCTTSCCCTTTB-TTS-----SSBCHHHHHHHHH
T ss_pred cCCCCCcChhhc-CCC-----CCCCHHHHHHHHH
Confidence 22 23445 488 9999999977654
No 17
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=99.87 E-value=4e-23 Score=159.79 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=116.4
Q ss_pred ceEEEEecccCccccCC---CChHHHHHHHHcc---cCcEE--------------EcccCCcchhhHHHhhcccCCCCCC
Q 030474 3 PQIVLFGDSITQQSFGS---AGWGAALADAYCR---KADVL--------------LRGYGGYNTRWALFLLHHIFPLDNS 62 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~---~~w~~~l~~~l~~---~~~v~--------------N~G~~G~ts~~~l~~l~~~~~~~~~ 62 (177)
.+|+|+|||||+ |++. .+|+..|++.+.. .+.++ |.|++|.++.+.+.++++.+. .
T Consensus 6 ~~i~~~GDSit~-G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~---~ 81 (215)
T 2vpt_A 6 IKIMPVGDSCTE-GMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLN---T 81 (215)
T ss_dssp EEEEEEESHHHH-TCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHH---H
T ss_pred eEEEeccccccc-CCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhh---c
Confidence 589999999998 4442 4899999888742 23454 899999999999999987664 3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH--HH---HHH-----H
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG--RM---EYA-----K 132 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~--~~---~~~-----a 132 (177)
.+||+|+|++|+||..... + ...++++++|+.++++.|+++|++++++|..+.. .+ ..+ +
T Consensus 82 ~~pd~vvi~~G~ND~~~~~--------~--~~~~~l~~li~~i~~~~p~~~ii~~~~~p~~~~~~~~n~~l~~~~~~~~~ 151 (215)
T 2vpt_A 82 HNPDVVFLWIGGNDLLLNG--------N--LNATGLSNLIDQIFTVKPNVTLFVADYYPWPEAIKQYNAVIPGIVQQKAN 151 (215)
T ss_dssp HCCSEEEEECCHHHHHHHC--------C--CCHHHHHHHHHHHHHHCTTCEEEEECCCSCSGGGHHHHTTHHHHHHHHHH
T ss_pred cCCCEEEEEccccccCCCC--------C--hhHHHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999987532 1 1268999999999999999999999999986421 11 111 1
Q ss_pred HhCCCceee--cccCCCCCCCCCCCccceeecccchhhhhhhh
Q 030474 133 YVNSSPYIN--CFLGRPPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 133 ~~~~vp~id--~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
.+.+++|+| ..+...+.++..|| .||+..+|-.+.+
T Consensus 152 ~~~~v~~iD~~~~~~~~~~~~~~Dg-----~Hpn~~G~~~~a~ 189 (215)
T 2vpt_A 152 AGKKVYFVKLSEIQFDRNTDISWDG-----LHLSEIGYKKIAN 189 (215)
T ss_dssp TTCCEEEECGGGSCCCHHHHBCTTS-----SSBCHHHHHHHHH
T ss_pred cCCCEEEEeccccccCccccccCCC-----CCcCHHHHHHHHH
Confidence 357899997 34444456788899 8999999976644
No 18
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=99.87 E-value=8.9e-22 Score=165.99 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=111.5
Q ss_pred CceEEEEecccCccccCC----CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccc
Q 030474 2 RPQIVLFGDSITQQSFGS----AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~----~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~ 77 (177)
+++|+|+|||||+ |++. .+|+..+++.+ +++++|.|+||+++... ..+.+.+. ..+||+|+|++|+||+
T Consensus 185 ~~~Iv~~GDSiT~-G~g~~~~~~~w~~~la~~l--~~~viN~GisG~~~~~~-~~~~~~l~---~~~pdlVvI~lGtND~ 257 (385)
T 3skv_A 185 KPHWIHYGDSICH-GRGAASPSRTWLALAARAE--GLDLQSLSFAADGSHLQ-PMFARLIR---DLPADLISLRVGTSNF 257 (385)
T ss_dssp CCEEEEEECSSCT-TTTCSSGGGSHHHHHHHHH--TCEEEEECCTGGGGSCC-HHHHHHHH---HSCCSEEEEEESHHHH
T ss_pred CceEEEEeccccC-CCCCCCCCCCHHHHHHHhc--CCcEEEeecCCCcccHH-HHHHHHHh---ccCCCEEEEEeeccCC
Confidence 4689999999998 5542 38999998877 58899999999553221 12223332 2579999999999998
Q ss_pred cccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC--Ch----------hHHH-------HHHHHh--CC
Q 030474 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV--DE----------DGRM-------EYAKYV--NS 136 (177)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~--~~----------~~~~-------~~~a~~--~~ 136 (177)
... .++++|.++++++|+.+|+++|+++||+++|++. .+ ..++ +.++++ .+
T Consensus 258 ~~~--------~~~~~~~~~l~~li~~ir~~~P~a~Illv~p~~~P~~~~~p~~~~~~l~~~~~~l~~~~~~lA~~g~~~ 329 (385)
T 3skv_A 258 MDG--------DGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPFWDELPADDKPTVADYREQVVKVAELLRKHGDQN 329 (385)
T ss_dssp TTT--------CCTTTHHHHHHHHHHHHHTTCSSSCEEEEECCCCTTTTTSCCTTSCCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CCC--------CCHHHHHHHHHHHHHHHHHHCCCCcEEEEcCCCCcccccCCccchhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 752 6889999999999999999999999999998753 21 1122 223444 68
Q ss_pred Cceee--cccCCCC------CCCCCCCccceeecccchhhhhhh
Q 030474 137 SPYIN--CFLGRPP------KYPQPIGKQQLFYHGGCSICYFLL 172 (177)
Q Consensus 137 vp~id--~~l~~~~------~~l~~dG~~~~~~~~~~~~~~~~~ 172 (177)
+.||| ..+.... +++..|| .||+..+|-.+.
T Consensus 330 v~~vd~~~l~~~~~~~~~~~~l~~~DG-----lHPn~~Gy~~mA 368 (385)
T 3skv_A 330 VHYLDGMRVWGPERGMELYLEKPDKYP-----THPNAVGHEIFA 368 (385)
T ss_dssp EEEECHHHHSCTTCCGGGBCSCTTSCC-----CSBCHHHHHHHH
T ss_pred EEEEecHHHcCcccccccccccCCCCC-----CCCCHHHHHHHH
Confidence 99997 3344322 5678899 999999997554
No 19
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=99.87 E-value=8.2e-22 Score=153.88 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=111.0
Q ss_pred CceEEEEecccCccccCC-CChHHHHHHHHcccCcEEEcccCCcchhhHHHhhccc-CCCCCCCCCcEEEEEeccccccc
Q 030474 2 RPQIVLFGDSITQQSFGS-AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHI-FPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~-~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~-~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
..+|+|+|||||+ |++. ..|... + .++.++|.|++|.++.+.+.++++. +. ..+||+|+|++|+||..
T Consensus 39 ~~~i~~~GDSit~-g~~~~~~~~~~----~-~~~~v~n~g~~G~t~~~~~~~~~~~~l~---~~~pd~vvi~~G~ND~~- 108 (229)
T 1fxw_F 39 EPDVLFVGDSMVQ-LMQQYEIWREL----F-SPLHALNFGIGGDTTRHVLWRLKNGELE---NIKPKVIVVWVGTNNHE- 108 (229)
T ss_dssp CCSEEEEESHHHH-GGGGSHHHHHH----T-GGGTEEEEECTTCCHHHHHHHHHTTTTS---SCCCSEEEEECCTTCTT-
T ss_pred CCCEEEEecchhc-CCCCchhHHHH----c-CCCcceeeccCcchHHHHHHHHHcCccc---cCCCCEEEEEEecCCCC-
Confidence 4689999999998 4332 235433 3 3588999999999999999998764 32 36899999999999982
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh---------HHHHHH---HH-hCCCceee--ccc
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED---------GRMEYA---KY-VNSSPYIN--CFL 144 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~---------~~~~~~---a~-~~~vp~id--~~l 144 (177)
.+.++|.++++++|+.+++..|+++|++++++|.... ..++.+ ++ +.+++|+| ..+
T Consensus 109 ---------~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~v~~iD~~~~~ 179 (229)
T 1fxw_F 109 ---------NTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGF 179 (229)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSSSSSSEEEECCCCSC
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCCCCchhhHHHHHHHHHHHHHHHHhcCCCeEEEeCHHHh
Confidence 4899999999999999999999999999999887531 112222 22 57899997 333
Q ss_pred CCC----CCCCCCCCccceeecccchhhhhhhh
Q 030474 145 GRP----PKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 145 ~~~----~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
... ...+..|| .||...+|-.+.+
T Consensus 180 ~~~~g~~~~~~~~Dg-----vHpn~~G~~~~a~ 207 (229)
T 1fxw_F 180 VHSDGAISCHDMFDF-----LHLTGGGYAKICK 207 (229)
T ss_dssp BCTTSCBCTTTBTTS-----SSBCHHHHHHHHH
T ss_pred hccCCCcchhhcCCC-----CCcCHHHHHHHHH
Confidence 221 22344688 9999999976654
No 20
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=99.86 E-value=1.2e-21 Score=164.50 Aligned_cols=155 Identities=19% Similarity=0.145 Sum_probs=119.6
Q ss_pred ceEEEEecccCccccC-----CCChHHHHHHHHcc-cCcEEEcccCCcchhhHHH--hhcccCCCCCCCCC-cEEEEEec
Q 030474 3 PQIVLFGDSITQQSFG-----SAGWGAALADAYCR-KADVLLRGYGGYNTRWALF--LLHHIFPLDNSNPP-VATTIFFG 73 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~-----~~~w~~~l~~~l~~-~~~v~N~G~~G~ts~~~l~--~l~~~~~~~~~~~p-d~Vvi~~G 73 (177)
++|+++|||||+|+++ ..+|+..|++.+.. .++++|.|++|.++.+.+. ++++.+. ..+| |+|+|++|
T Consensus 163 ~~Iv~lGDSiT~G~~g~~~~~~~~w~~~L~~~L~~~~~~v~N~GisG~tt~~~l~~~rl~~~l~---~~~p~d~VvI~~G 239 (375)
T 2o14_A 163 RTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHTFQVRNMASGGQIARGFRNDGQLEAILK---YIKPGDYFMLQLG 239 (375)
T ss_dssp CEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCTTTCEEEECCCTTCCHHHHHHSSHHHHHHT---TCCTTCEEEEECC
T ss_pred cEEEEecCccccCCcCCCCCCCCCHHHHHHHHhccCCceEEEeccCCCcHhhhhhcccHHHHHH---hCCCCCEEEEEEE
Confidence 4999999999984143 24899999888754 3679999999999988884 7776654 3578 99999999
Q ss_pred cccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh----h-----------HHHHHHHHhCCCc
Q 030474 74 ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE----D-----------GRMEYAKYVNSSP 138 (177)
Q Consensus 74 ~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~----~-----------~~~~~~a~~~~vp 138 (177)
+||..... ..++++|.++|++||+++|++ +++||+++|+|... . ...+.+|++++++
T Consensus 240 ~ND~~~~~------~~~~~~~~~~l~~ii~~lr~~--~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~~v~ 311 (375)
T 2o14_A 240 INDTNPKH------KESEAEFKEVMRDMIRQVKAK--GADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEEKTY 311 (375)
T ss_dssp TGGGCGGG------CCCHHHHHHHHHHHHHHHHTT--TCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHHTTCE
T ss_pred ccCCCccC------CCCHHHHHHHHHHHHHHHHHC--CCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHHcCCe
Confidence 99997631 258999999999999999988 68999999886432 0 1234667889999
Q ss_pred eee--cccCC----------CCCCCCCCCccceeecccchhhhhhhh
Q 030474 139 YIN--CFLGR----------PPKYPQPIGKQQLFYHGGCSICYFLLQ 173 (177)
Q Consensus 139 ~id--~~l~~----------~~~~l~~dG~~~~~~~~~~~~~~~~~~ 173 (177)
||| ..+.. .+.|+..|| .||+..+|-.+.+
T Consensus 312 ~iDl~~~~~~~~~~~g~~~~~~~~~~~Dg-----vHpn~~G~~~~A~ 353 (375)
T 2o14_A 312 LIDLNVLSSAYFTSIGPERTLGLYMDGDT-----LHPNRAGADALAR 353 (375)
T ss_dssp EECHHHHHHHHHHHHCHHHHHTTBCTTCS-----SSBBHHHHHHHHH
T ss_pred EEehHHHHHHHHHhcCcccchhhhcCCCC-----CCCCHHHHHHHHH
Confidence 997 22211 245677899 9999999977644
No 21
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=99.80 E-value=2e-19 Score=148.77 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=103.1
Q ss_pred CceEEEEecccCccccCC-----------------CChHHHHHHHHcccCcE---------EEcccCCcchhhHHHhhcc
Q 030474 2 RPQIVLFGDSITQQSFGS-----------------AGWGAALADAYCRKADV---------LLRGYGGYNTRWALFLLHH 55 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~-----------------~~w~~~l~~~l~~~~~v---------~N~G~~G~ts~~~l~~l~~ 55 (177)
+++|+|+|||||+ |++. .+|+..+++.|..++.+ .|.|.+|.+ ....++++
T Consensus 122 ~~~I~~iGDSiT~-G~g~~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~~~~~~~sG~~~~~n~g~~g~~--~~~~~~~~ 198 (341)
T 2wao_A 122 ERKIEFIGDSITC-AYGNEGTSKEQSFTPKNENSYMSYAAITARNLNASANMIAWSGIGLTMNYGGAPGP--LIMDRYPY 198 (341)
T ss_dssp SEEEEEEESHHHH-TTTTTCCCTTSCCCGGGCCGGGSHHHHHHHHTTEEEEEEECTTCCSSCCGGGCCCC--CHHHHTTE
T ss_pred CceEEEEcccccc-CCCccCCCcCCCCCcccccchhhhHHHHHHHhCCceeEEeeccceEEecCCCCCCC--ChhHHhhh
Confidence 3589999999998 5431 27999999988543332 223333322 23444544
Q ss_pred cCCC-----C-CCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHH-
Q 030474 56 IFPL-----D-NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRM- 128 (177)
Q Consensus 56 ~~~~-----~-~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~- 128 (177)
.... . ...+||+|+|++|+||..... .+.++|.+++++||+++|+++|+++|++++||+...+.+.
T Consensus 199 ~~~~~~~~~d~~~~~PdlVvI~lGtND~~~~~-------~~~~~~~~~l~~li~~ir~~~p~a~Iil~~pp~~~~~~~~~ 271 (341)
T 2wao_A 199 TLPYSGVRWDFSKYVPQVVVINLGTNDFSTSF-------ADKTKFVTAYKNLISEVRRNYPDAHIFCCVGPMLWGTGLDL 271 (341)
T ss_dssp EETTTTEECCGGGCCCSEEEEECCHHHHSSSC-------CCHHHHHHHHHHHHHHHHHHCTTCEEEEEECSSCCHHHHHH
T ss_pred ccCCCcccccccCCCCCEEEEeCccccCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCcCCchhhH
Confidence 3210 0 136899999999999997642 3578999999999999999999999999998777643211
Q ss_pred -----HH----HH--HhCCCceeecccCCCCCCCCCCCccceeecccchhhhhhh
Q 030474 129 -----EY----AK--YVNSSPYINCFLGRPPKYPQPIGKQQLFYHGGCSICYFLL 172 (177)
Q Consensus 129 -----~~----~a--~~~~vp~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~ 172 (177)
+. .+ .+.++.|+|..-...++++ .|| +||+..+|-.+.
T Consensus 272 ~~~~i~~~~~~~~~a~~~~v~~vD~~~~~~~~~~-~Dg-----lHPn~~G~~~mA 320 (341)
T 2wao_A 272 CRSYVTEVVNDCNRSGDLKVYFVEFPQQDGSTGY-GED-----WHPSIATHQLMA 320 (341)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEECCCCCSTTCC-CGG-----GCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcccccCccCc-CCC-----CCcCHHHHHHHH
Confidence 11 11 1456888873211122333 677 999999986554
No 22
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=99.79 E-value=2.2e-19 Score=146.38 Aligned_cols=167 Identities=16% Similarity=0.085 Sum_probs=111.3
Q ss_pred ceEEEEecccCccccCC-----------------CChHHHHHHHHccc----CcEEEcccCCcchhhHHHhhc-------
Q 030474 3 PQIVLFGDSITQQSFGS-----------------AGWGAALADAYCRK----ADVLLRGYGGYNTRWALFLLH------- 54 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~-----------------~~w~~~l~~~l~~~----~~v~N~G~~G~ts~~~l~~l~------- 54 (177)
.+|+++|||+|+ |++. .+|+..+++.+... ..+.|.|++|.|+.+++.+..
T Consensus 6 ~~~valGDS~ta-G~g~~~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~~~~n~a~sG~tt~~~~~~~~~~~~~~~ 84 (306)
T 1esc_A 6 VPTVFFGDSYTA-NFGIAPVTNQDSERGWCFQAKENYPAVATRSLADKGITLDVQADVSCGGALIHHFWEKQELPFGAGE 84 (306)
T ss_dssp EEEEECCSHHHH-TTTCSSBTTTTSGGGGGTCBTTCHHHHHHHHHHTTTCEEEEEEECCCTTCCGGGGTSCEECGGGCCE
T ss_pred ceEEEECchhhh-CCCCCCCCCCcCCCCCCcCCccCHHHHHHHHhccccCCcceEEEeeccCcccccccccccccccccc
Confidence 489999999998 4431 36999999888532 789999999999998775421
Q ss_pred --ccCCCCCCCCCcEEEEEecccccccc-------CC--------CCC---------------------CccCCHHHHHH
Q 030474 55 --HIFPLDNSNPPVATTIFFGANDAALF-------GR--------TSE---------------------RQHVPVEEYGD 96 (177)
Q Consensus 55 --~~~~~~~~~~pd~Vvi~~G~ND~~~~-------~~--------~~~---------------------~~~~~~~~~~~ 96 (177)
..+. +...++|+|+|++|+||+... .. .+. ......+++.+
T Consensus 85 ~~~ql~-~l~~~~dlV~i~iGgND~~~~~~~~~c~~~~~~~~~~~~~p~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 163 (306)
T 1esc_A 85 LPPQQD-ALKQDTQLTVGSLGGNTLGFNRILKQCSDELRKPSLLPGDPVDGDEPAAKCGEFFGTGDGKQWLDDQFERVGA 163 (306)
T ss_dssp ECCGGG-GCCTTCCEEEECCCHHHHTHHHHHHHTCTTTTSSCSSCCCCSSTTSCGGGHHHHTTTSHHHHHHHHHHHHHHH
T ss_pred chhHHH-hccCCCCEEEEEecCCcccHHHHHHHHhccccccccccCCcccccccCCcchhhhhcccchHHHHHHHHHHHH
Confidence 0111 123579999999999998422 00 000 00011345999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCh-------------------------hH--------H---HHHHHHhCCCcee
Q 030474 97 NLKIMVQHLKRLSPIMLVVLITPPPVDE-------------------------DG--------R---MEYAKYVNSSPYI 140 (177)
Q Consensus 97 nl~~ii~~~r~~~p~~~vil~tp~p~~~-------------------------~~--------~---~~~~a~~~~vp~i 140 (177)
+|++|++++|++.|+++|+++++|++.. .. + .+.+++++++.||
T Consensus 164 ~l~~il~~ir~~~p~a~I~lvgyp~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~A~~~g~~~v 243 (306)
T 1esc_A 164 ELEELLDRIGYFAPDAKRVLVGYPRLVPEDTTKCLTAAPGQTQLPFADIPQDALPVLDQIQKRLNDAMKKAAADGGADFV 243 (306)
T ss_dssp HHHHHHHHHHHHSTTCEEEEECCCCCSCSCGGGGGSCCTTCSSCTTTTCCTTTHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEeCChhccCCCCCCCcCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999998664310 00 1 1334668899999
Q ss_pred e--cccCCCC------CCCCCCC----------ccceeecccchhhhhh
Q 030474 141 N--CFLGRPP------KYPQPIG----------KQQLFYHGGCSICYFL 171 (177)
Q Consensus 141 d--~~l~~~~------~~l~~dG----------~~~~~~~~~~~~~~~~ 171 (177)
| ..+..+. .|+.... .....+||+..+|=.+
T Consensus 244 D~~~~f~~~~~c~~~~~w~~~~~~~~~~~~~~~~~~d~~HPn~~G~~~i 292 (306)
T 1esc_A 244 DLYAGTGANTACDGADRGIGGLLEDSQLELLGTKIPWYAHPNDKGRDIQ 292 (306)
T ss_dssp CTGGGCTTSSTTSTTSCSBCCSSSEEEEESSSCEEECSSCBCHHHHHHH
T ss_pred eCcccccCCCCCCCchhhhhcccccccccccccccccccCCCHHHHHHH
Confidence 7 3443332 5654211 1245599999988543
No 23
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=99.78 E-value=1.3e-18 Score=144.37 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=100.0
Q ss_pred CceEEEEecccCccccCC----------------CChHHHHHHHHcccCcEEE-------cccCCcch-hhHHHhhcccC
Q 030474 2 RPQIVLFGDSITQQSFGS----------------AGWGAALADAYCRKADVLL-------RGYGGYNT-RWALFLLHHIF 57 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~----------------~~w~~~l~~~l~~~~~v~N-------~G~~G~ts-~~~l~~l~~~~ 57 (177)
+++|+|+|||||+ |++. .+|+..+++.|..++.+++ +|.+|.++ .....++++..
T Consensus 132 ~~~I~~iGDSIT~-G~g~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~~~~~~~sG~gv~~~~~g~~~~~~~~~~~~r~~ 210 (347)
T 2waa_A 132 QRKILVLGDSVTC-GEAIDRVAGEDKNTRWWNARESYGMLTAKALDAQVQLVCWGGRGLIRSWNGKTDDANLPDFYQFTL 210 (347)
T ss_dssp SEEEEEEESTTTT-TTTTTCCTTSCCCGGGCCSTTSHHHHHHHHTTEEEEEEECTTCCSSCCTTSCSSSCCHHHHTTBSS
T ss_pred CceEEEeeccccc-cCCCCCCCCCCCCccccchhhhhHHHHHHHhCCchheEeecCceEEeccCCCCCCCCHHHHHHhhc
Confidence 3589999999998 5441 2899999998854433332 12233222 13334444442
Q ss_pred CC-------C-CCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH---
Q 030474 58 PL-------D-NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG--- 126 (177)
Q Consensus 58 ~~-------~-~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~--- 126 (177)
+. . ...+||+|+|++|+||..... .+.++|.+++++||+++|+++|+++|++++||+...+.
T Consensus 211 ~~~~~~~~~d~~~~~Pd~VvI~lG~ND~~~~~-------~~~~~~~~~l~~li~~ir~~~p~~~I~l~~~p~~~~~~~~~ 283 (347)
T 2waa_A 211 GDTGQAPQWDHHRYQPDLIISAIGTNDFSPGI-------PDRATYINTYTRFVRTLLDNHPQATIVLTEGAILNGDKKAA 283 (347)
T ss_dssp CCSTTCCBCCGGGCCCSEEEECCCHHHHSSSC-------CCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSSCCHHHHHH
T ss_pred cccCCCccCccccCCCCEEEEEccccCCCCCC-------CcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCccCCchhhH
Confidence 10 0 135899999999999997642 35689999999999999999999999999987665432
Q ss_pred HHH---HHHH---hCCCceeecccCCCCCCCCCCCccceeecccchhhhhhh
Q 030474 127 RME---YAKY---VNSSPYINCFLGRPPKYPQPIGKQQLFYHGGCSICYFLL 172 (177)
Q Consensus 127 ~~~---~~a~---~~~vp~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~ 172 (177)
+.+ .+++ ..++.|+|..-... ..|| .||++.+|-.+.
T Consensus 284 ~~~~i~~~~~~~~~~~v~~id~~~~~~----~~Dg-----lHPn~~G~~~~A 326 (347)
T 2waa_A 284 LVSYIGETRQQLHSNRVFYASSSHHPG----DNSD-----AHPTKDQHAAMA 326 (347)
T ss_dssp HHHHHHHHHHHHCCTTEEECCCCCCCC----BTTB-----SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEccCcCC----CCCC-----CCcCHHHHHHHH
Confidence 222 2222 23577876211111 1166 999999986553
No 24
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=99.71 E-value=5.2e-17 Score=135.71 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=97.3
Q ss_pred CceEEEEecccCccccCC-------------------CChHHHHHHHHcccCcEEEcccCCcch---------h-hHHHh
Q 030474 2 RPQIVLFGDSITQQSFGS-------------------AGWGAALADAYCRKADVLLRGYGGYNT---------R-WALFL 52 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~-------------------~~w~~~l~~~l~~~~~v~N~G~~G~ts---------~-~~l~~ 52 (177)
.++|+|+|||||+ |++. .+|+..+++.|..++.++ +.+|.+. . ....+
T Consensus 142 ~~~I~~iGDSIT~-G~g~~~~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~~~~~--~~sG~~v~~~~gg~~~g~~~~~~ 218 (366)
T 2w9x_A 142 KRQIEFIGDSFTV-GYGNTSPSRECTDEELFKTTNSQMAFGPLTAKAFDADYQIN--ASSGFGIVRNYNGTSPDKSLLSL 218 (366)
T ss_dssp CCEEEEEESHHHH-TTTTTCSCSCCCHHHHHHHCCGGGSHHHHHHHHHTCEEEEE--ECTTCCSSCCGGGCSTTCCHHHH
T ss_pred CceEEEEeccccc-cCcccCCCCCCCcccccceecccccHHHHHHHHhCCceeEE--eecCceEEeCCCCCCCCCCHHHH
Confidence 3589999999998 5542 389999999986544333 3332211 0 12233
Q ss_pred hcccCC-----CC-CCCCCcEEEEEeccccccccCCCCCC-c--cCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 53 LHHIFP-----LD-NSNPPVATTIFFGANDAALFGRTSER-Q--HVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 53 l~~~~~-----~~-~~~~pd~Vvi~~G~ND~~~~~~~~~~-~--~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
+++... .. ...+||+|+|++|+||.......... . ..+.++|.+++++||+++|+++|+++|++++||+..
T Consensus 219 ~~r~~~~~~~~~~~~~~~Pd~VvI~lGtND~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ir~~~p~a~Iil~~pp~~~ 298 (366)
T 2w9x_A 219 YPYTLNNPDQLYHNKHWKPQVIVIGLGTNDFSTALNDNERWKTREALHADYVANYVKFVKQLHSNNARAQFILMNSDQSN 298 (366)
T ss_dssp TTBSSSSTTCBCCCTTCCCSEEEEECCHHHHSSCCCTTSSCCSHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEESCGG
T ss_pred HHHhcCCCccccccccCCCCEEEEeCccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCcC
Confidence 333210 00 13689999999999998654210000 0 012589999999999999999999999999976553
Q ss_pred hhHHHH-------HHHH--hCCCceeecccCCCCCCCCCCCccceeecccchhhhhhh
Q 030474 124 EDGRME-------YAKY--VNSSPYINCFLGRPPKYPQPIGKQQLFYHGGCSICYFLL 172 (177)
Q Consensus 124 ~~~~~~-------~~a~--~~~vp~id~~l~~~~~~l~~dG~~~~~~~~~~~~~~~~~ 172 (177)
. .+.+ ..++ ..++.|+|.. . .++ .. .++||+..+|-.+.
T Consensus 299 ~-~~~~~i~~~~~~~~~~~~~~v~~vd~~--~-~~~-~~-----dd~HPn~~G~~~mA 346 (366)
T 2w9x_A 299 G-EIAEQVGKVVAQLKGGGLHQVEQIVFK--G-LDY-SG-----CHWHPSANDDQLLA 346 (366)
T ss_dssp G-HHHHHHHHHHHHHHHTTCCCEEEEEEC--C-CCC-CB-----GGGBCCHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHhcCCCcEEEEEcc--C-CCC-CC-----CCCCcCHHHHHHHH
Confidence 3 2221 1121 3457777631 1 111 22 23999999986543
No 25
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}
Probab=98.02 E-value=2.1e-05 Score=63.07 Aligned_cols=151 Identities=11% Similarity=-0.014 Sum_probs=90.1
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhccc-----C----CCC-------------
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHI-----F----PLD------------- 60 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~-----~----~~~------------- 60 (177)
.||+|||.|+|. ..-+ .....|++....++.+.+.-++|.+-.+-.+..... . ..+
T Consensus 11 ~rVL~IGNS~t~-n~~p-~~l~~la~a~g~~~~v~~~~igG~~L~~H~~~~~~~~~~~~y~k~~~~g~~~~~~~~~~~~~ 88 (271)
T 4i8i_A 11 IKVLAIGNSFSQ-DAVE-QYLHELGEAEGITMIIGNMFIGGCSLERHVQNIRNNAPAYAYRKVEKDGEKTETRSMTIEKA 88 (271)
T ss_dssp EEEEEEESHHHH-HHHS-SSHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHTTCCCEEEEEECTTSCEEEEEEECHHHH
T ss_pred eEEEEECCCCCc-CcHH-HHHHHHHHhcCCceEEEEEecCCccHHHHHhccccccccccccccccCCccccccchhHHHH
Confidence 589999999994 2111 233333332233455668888887765544332210 0 000
Q ss_pred -CCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCCCCCh------------h-
Q 030474 61 -NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDE------------D- 125 (177)
Q Consensus 61 -~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~-p~~~vil~tp~p~~~------------~- 125 (177)
...+.|+||++=++.-. ..++.|...++++++.+|+.. |+++++|..+=+..+ +
T Consensus 89 L~~~~wD~VilQe~S~~~-----------~~~~~~~~~~~~l~~~ir~~~~p~ak~il~~TWa~~~~~~~~~f~~~~~~~ 157 (271)
T 4i8i_A 89 LADEKWDYISVQQASPLS-----------GIYDSYKASLPELVNYIRERIGKETVLMMHQTWAYATNANHTGFKNYDQNQ 157 (271)
T ss_dssp HHHSCCSEEEECCCGGGT-----------TCHHHHHHHHHHHHHHHHTTSCTTCEEEEEECCCCCTTCCCGGGGGGTTCH
T ss_pred hhcCCCCEEEeCCCCCCC-----------CCHHHHHHHHHHHHHHHHhhcCCCCEEEEEeccCCCCCCCcccccccCccH
Confidence 13678999996554321 257889999999999999998 999999986532211 0
Q ss_pred -HH-------HHHHHHhCCCc-eee------cccCC-CCCCCCCCCccceeecccc-hhhhhh
Q 030474 126 -GR-------MEYAKYVNSSP-YIN------CFLGR-PPKYPQPIGKQQLFYHGGC-SICYFL 171 (177)
Q Consensus 126 -~~-------~~~~a~~~~vp-~id------~~l~~-~~~~l~~dG~~~~~~~~~~-~~~~~~ 171 (177)
.+ ..+++++.+++ ++. ..... ....+..|| +||+. .+.|..
T Consensus 158 ~~m~~~l~~ay~~~a~~~~~~~viPvG~a~~~~~~~~p~~~l~~Dg-----~Hps~~~GsYLa 215 (271)
T 4i8i_A 158 MKMYTSIVDAVKKAANLVGIKKIIPSGTAIQNARTSFIGDHMNRDG-----YHLDLTIGRYTA 215 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEHHHHHHHHHHSTTCSCCBSSS-----SSBCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeeHHHHHHHHHHhCcCccccCCC-----CCCCCccCHHHH
Confidence 11 12345566775 542 11111 122334888 99999 999864
No 26
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=97.25 E-value=0.00092 Score=59.15 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=39.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+..+++|.+|+||...... ......+++.+++.+.|+++.+.. ..+|++++.||+
T Consensus 145 ~~~sL~~v~iG~ND~~~~~~---~~~~~~~~~v~~~~~~v~~L~~~G-ar~~~v~~~pp~ 200 (632)
T 3kvn_X 145 DPNALYYITGGGNDFLQGRI---LNDVQAQQAAGRLVDSVQALQQAG-ARYIVVWLLPDL 200 (632)
T ss_dssp CTTSEEEECCSHHHHHTTCC---CSHHHHHHHHHHHHHHHHHHHHTT-CCCEEEECCCCG
T ss_pred CCCCEEEEEEechhhhcccc---cChHHHHHHHHHHHHHHHHHHHcC-CcEEEEeCCCCC
Confidence 35689999999999864321 001235678888888999988774 457888887764
No 27
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=91.46 E-value=1.1 Score=29.15 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=47.8
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|..+|+++.|+-.. ...+...+. .++.++....+| ..+++.+.+ .+||+|++-+..-|.
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~l~~~g~~vv~~~~~~---~~a~~~~~~-------~~~dlil~D~~l~~~-- 60 (120)
T 1tmy_A 1 MGKRVLIVDDAAFM--------RMMLKDIITKAGYEVAGEATNG---REAVEKYKE-------LKPDIVTMDITMPEM-- 60 (120)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEEESSH---HHHHHHHHH-------HCCSEEEEECSCGGG--
T ss_pred CCceEEEEcCcHHH--------HHHHHHHHhhcCcEEEEEECCH---HHHHHHHHh-------cCCCEEEEeCCCCCC--
Confidence 77899999988653 233444442 345543322222 333333322 458999995443221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+- .++++.+++..|.++||+++...-
T Consensus 61 ----------~g-------~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 61 ----------NG-------IDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp ----------CH-------HHHHHHHHHHCTTCCEEEEECTTC
T ss_pred ----------cH-------HHHHHHHHhhCCCCeEEEEeCCCC
Confidence 11 245667777778889999986543
No 28
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=90.56 E-value=2.3 Score=29.06 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=48.6
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.++|+++.|+-.. ...+...+..++.+.-. . +...+++.+.+. ..+|+|++-+...|.
T Consensus 4 ~~~ILivdd~~~~--------~~~l~~~L~~~~~v~~~-~---~~~~a~~~l~~~------~~~dlvi~D~~l~~~---- 61 (151)
T 3kcn_A 4 NERILLVDDDYSL--------LNTLKRNLSFDFEVTTC-E---SGPEALACIKKS------DPFSVIMVDMRMPGM---- 61 (151)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHTTTSEEEEE-S---SHHHHHHHHHHS------CCCSEEEEESCCSSS----
T ss_pred CCeEEEEeCCHHH--------HHHHHHHhccCceEEEe-C---CHHHHHHHHHcC------CCCCEEEEeCCCCCC----
Confidence 4689999987552 24566666545555422 1 223444443321 235999996554332
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|.++||+++...
T Consensus 62 --------~g-------~~~~~~l~~~~~~~~ii~~s~~~ 86 (151)
T 3kcn_A 62 --------EG-------TEVIQKARLISPNSVYLMLTGNQ 86 (151)
T ss_dssp --------CH-------HHHHHHHHHHCSSCEEEEEECGG
T ss_pred --------cH-------HHHHHHHHhcCCCcEEEEEECCC
Confidence 11 24566777778889999988543
No 29
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=88.92 E-value=3.8 Score=27.43 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=48.5
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|.++|+++.|+-.. ...+...+. .++.+.-. . +...+++.+.+ .+||+|++-+ ..|.
T Consensus 3 ~~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~-------~~~dlvi~d~-~~~~-- 60 (142)
T 2qxy_A 3 LTPTVMVVDESRIT--------FLAVKNALEKDGFNVIWA-K---NEQEAFTFLRR-------EKIDLVFVDV-FEGE-- 60 (142)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHGGGTCEEEEE-S---SHHHHHHHHTT-------SCCSEEEEEC-TTTH--
T ss_pred CCCeEEEEeCCHHH--------HHHHHHHHHhCCCEEEEE-C---CHHHHHHHHhc-------cCCCEEEEeC-CCCC--
Confidence 35689999888653 234555553 34555421 1 22334443332 5689999954 3221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+-.++++.+++..|.++||+++...-
T Consensus 61 -----------------~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (142)
T 2qxy_A 61 -----------------ESLNLIRRIREEFPDTKVAVLSAYVD 86 (142)
T ss_dssp -----------------HHHHHHHHHHHHCTTCEEEEEESCCC
T ss_pred -----------------cHHHHHHHHHHHCCCCCEEEEECCCC
Confidence 12356777778888899999986543
No 30
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.61A {Clostridium acetobutylicum} SCOP: c.23.10.7
Probab=88.46 E-value=1.3 Score=35.23 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=56.6
Q ss_pred cCcEEEcccCCcchhh----------HHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHH
Q 030474 33 KADVLLRGYGGYNTRW----------ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMV 102 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~----------~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii 102 (177)
.+-+++.+.+|..... .+++...... ...+.-|+..=|-+|.... .+++|.+.+..||
T Consensus 72 pVGlI~~a~GGT~Ie~W~~~~~ly~~~l~~~~~a~~---~~~ikGvlWyQGEsd~~~~---------~~~~Y~~~l~~lI 139 (290)
T 1zmb_A 72 IIGLIPCAEGGSSIDEWALDGVLFRHALTEAKFAME---SSELTGILWHQGESDSLNG---------NYKVYYKKLLLII 139 (290)
T ss_dssp EEEEEECCCTTCCGGGGCTTSHHHHHHHHHHHHHHT---SSEEEEEEEECCGGGSSSS---------CSTTHHHHHHHHH
T ss_pred CEEEEEccCCCeeHHHhCCCcccHHHHHHHHHHhcc---CCCeeEEEEEecCCCcCCC---------CHHHHHHHHHHHH
Confidence 3557899999865432 1122212111 3567889999999998531 4678999999999
Q ss_pred HHHHHhC--CCCEEEEEcCCCCC
Q 030474 103 QHLKRLS--PIMLVVLITPPPVD 123 (177)
Q Consensus 103 ~~~r~~~--p~~~vil~tp~p~~ 123 (177)
+..|+.. |+.+++++..++..
T Consensus 140 ~~wR~~~~~~~lPf~~vql~~~~ 162 (290)
T 1zmb_A 140 EALRKELNVPDIPIIIGGLGDFL 162 (290)
T ss_dssp HHHHHHTTCSSSCEEEECCCTTT
T ss_pred HHHHHHcCCCCCCEEEEEcCCcC
Confidence 9999987 78899998887754
No 31
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=88.42 E-value=3.4 Score=27.90 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc---ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC---RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~---~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~ 77 (177)
|..+|+++.|+-.. ...+...+. .++.++....+| ..+++.+. ..+||+|++-+...|.
T Consensus 1 m~~~ILivdd~~~~--------~~~l~~~L~~~~~~~~~~~~~~~~---~~al~~~~-------~~~~dlvllD~~lp~~ 62 (141)
T 3cu5_A 1 MSLRILIVDDEKLT--------RDGLIANINWKALSFDQIDQADDG---INAIQIAL-------KHPPNVLLTDVRMPRM 62 (141)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHCCGGGSCCSEEEEESSH---HHHHHHHT-------TSCCSEEEEESCCSSS
T ss_pred CcceEEEEeCCHHH--------HHHHHHHHHHccCCcEEeeecccH---HHHHHHHh-------cCCCCEEEEeCCCCCC
Confidence 55789999988653 234555542 234444222222 23333222 2568999995443221
Q ss_pred cccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|.++||+++...
T Consensus 63 ------------~g-------~~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 63 ------------DG-------IELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp ------------CH-------HHHHHHHHHHCTTCEEEEECCST
T ss_pred ------------CH-------HHHHHHHHhhCCCCcEEEEeCCC
Confidence 11 24556667777889999998654
No 32
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=88.16 E-value=3.2 Score=27.08 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=46.5
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|..+|+++.|+-.. ...+...+. .++.+. ...+ ...+++.+.+ .+||+|++-+...|.
T Consensus 2 m~~~ilivdd~~~~--------~~~l~~~l~~~~~~v~-~~~~---~~~a~~~~~~-------~~~dlvl~D~~l~~~-- 60 (124)
T 1srr_A 2 MNEKILIVDDQSGI--------RILLNEVFNKEGYQTF-QAAN---GLQALDIVTK-------ERPDLVLLDMKIPGM-- 60 (124)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHTTTCEEE-EESS---HHHHHHHHHH-------HCCSEEEEESCCTTC--
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHHCCcEEE-EeCC---HHHHHHHHhc-------cCCCEEEEecCCCCC--
Confidence 56689999988653 234555453 245443 2222 2333433322 458999995443221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|.++||+++...
T Consensus 61 ----------~g-------~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 61 ----------DG-------IEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp ----------CH-------HHHHHHHHHHCTTCEEEEEESSC
T ss_pred ----------CH-------HHHHHHHHHhCCCCCEEEEEccC
Confidence 11 23556677777889999998654
No 33
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=86.91 E-value=4.5 Score=26.74 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=46.9
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|.++|+++.|+-.. ...+...+. .++.+.- .. +...++..+.+ .+||+|++-+...|.
T Consensus 2 m~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~~~~-------~~~dlvl~D~~l~~~-- 60 (136)
T 1mvo_A 2 MNKKILVVDDEESI--------VTLLQYNLERSGYDVIT-AS---DGEEALKKAET-------EKPDLIVLDVMLPKL-- 60 (136)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHHHH-------HCCSEEEEESSCSSS--
T ss_pred CCCEEEEEECCHHH--------HHHHHHHHHHCCcEEEE-ec---CHHHHHHHHhh-------cCCCEEEEecCCCCC--
Confidence 77899999998653 233444442 2454432 11 22333333322 458999985443221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+- .++++.+++..|..+||+++...-
T Consensus 61 ----------~g-------~~~~~~l~~~~~~~~ii~~s~~~~ 86 (136)
T 1mvo_A 61 ----------DG-------IEVCKQLRQQKLMFPILMLTAKDE 86 (136)
T ss_dssp ----------CH-------HHHHHHHHHTTCCCCEEEEECTTC
T ss_pred ----------CH-------HHHHHHHHcCCCCCCEEEEECCCC
Confidence 11 235667777777888999886543
No 34
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.48 E-value=5.4 Score=26.71 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|+++|+++.|+-.. ...+...+. .++.+.- .. +...+++.+.+ .+||+|++ |...
T Consensus 3 m~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~l~~-------~~~dlvll-----D~~l 58 (137)
T 3cfy_A 3 LRPRVLLVEDSTSL--------AILYKQYVKDEPYDIFH-VE---TGRDAIQFIER-------SKPQLIIL-----DLKL 58 (137)
T ss_dssp CCCEEEEECSCTTH--------HHHHHHHTTTSSSEEEE-ES---SHHHHHHHHHH-------HCCSEEEE-----CSBC
T ss_pred ccceEEEEeCCHHH--------HHHHHHHHHhcCceEEE-eC---CHHHHHHHHHh-------cCCCEEEE-----ecCC
Confidence 45689999998663 345666553 2454432 11 22334443332 45899999 4433
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
.+ .+- .++++.+++..|.++||+++...
T Consensus 59 ~~-------~~g-------~~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 59 PD-------MSG-------EDVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp SS-------SBH-------HHHHHHHHHTTCCCEEEEEESSC
T ss_pred CC-------CCH-------HHHHHHHHhcCCCCCEEEEEecC
Confidence 21 111 24566677777788999988654
No 35
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=86.43 E-value=4.6 Score=26.55 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=45.8
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
+++|+++.|+-.. ...+...+..++.+.-. . +...+++.+.+ .+||+|++-+...|
T Consensus 4 ~~~ilivdd~~~~--------~~~l~~~l~~~~~v~~~-~---~~~~a~~~l~~-------~~~dlvi~d~~l~~----- 59 (133)
T 3nhm_A 4 KPKVLIVENSWTM--------RETLRLLLSGEFDCTTA-A---DGASGLQQALA-------HPPDVLISDVNMDG----- 59 (133)
T ss_dssp -CEEEEECSCHHH--------HHHHHHHHTTTSEEEEE-S---SHHHHHHHHHH-------SCCSEEEECSSCSS-----
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHhCCcEEEEE-C---CHHHHHHHHhc-------CCCCEEEEeCCCCC-----
Confidence 5689999888653 23455555545554422 1 22333433332 56899999433222
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p 121 (177)
.+- .++++.+|+. .|+++||+++...
T Consensus 60 -------~~g-------~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 60 -------MDG-------YALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp -------SCH-------HHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred -------CCH-------HHHHHHHHhCCccCCCCEEEEeCCC
Confidence 121 2455666665 4578899998654
No 36
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=86.41 E-value=5.2 Score=26.24 Aligned_cols=83 Identities=18% Similarity=0.116 Sum_probs=46.1
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.++|+++.|+-.. ...+.+.+. .++.+.-. . +...+++.+. ..+||+|++-+...|.
T Consensus 7 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~-------~~~~dlvi~d~~l~~~--- 64 (130)
T 3eod_A 7 GKQILIVEDEQVF--------RSLLDSWFSSLGATTVLA-A---DGVDALELLG-------GFTPDLMICDIAMPRM--- 64 (130)
T ss_dssp TCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-S---CHHHHHHHHT-------TCCCSEEEECCC-------
T ss_pred CCeEEEEeCCHHH--------HHHHHHHHHhCCceEEEe-C---CHHHHHHHHh-------cCCCCEEEEecCCCCC---
Confidence 3588888887653 133444442 24554431 1 2333444332 2568999994433221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+-.++++.+|+..|.++||+++...-
T Consensus 65 ----------------~g~~~~~~l~~~~~~~~ii~~t~~~~ 90 (130)
T 3eod_A 65 ----------------NGLKLLEHIRNRGDQTPVLVISATEN 90 (130)
T ss_dssp -----------------CHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred ----------------CHHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 11356677777888899999987653
No 37
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=86.37 E-value=5.2 Score=26.33 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=46.2
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+. .++.++....++. .+++.+.+ .+||+|++-+...|.
T Consensus 2 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~~~~~---~a~~~~~~-------~~~dlii~d~~l~~~---- 59 (134)
T 3f6c_A 2 LNAIIIDDHPLA--------IAAIRNLLIKNDIEILAELTEGG---SAVQRVET-------LKPDIVIIDVDIPGV---- 59 (134)
T ss_dssp EEEEEECCCHHH--------HHHHHHHHHHTTEEEEEEESSST---THHHHHHH-------HCCSEEEEETTCSSS----
T ss_pred eEEEEEcCCHHH--------HHHHHHHHhhCCcEEEEEcCCHH---HHHHHHHh-------cCCCEEEEecCCCCC----
Confidence 477888877553 133444442 2444442333332 33333332 468999995544331
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
+- .++++.+|+..|+++||+++...-.
T Consensus 60 --------~g-------~~~~~~l~~~~~~~~ii~~s~~~~~ 86 (134)
T 3f6c_A 60 --------NG-------IQVLETLRKRQYSGIIIIVSAKNDH 86 (134)
T ss_dssp --------CH-------HHHHHHHHHTTCCSEEEEEECC---
T ss_pred --------Ch-------HHHHHHHHhcCCCCeEEEEeCCCCh
Confidence 11 3466777888889999999876543
No 38
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=86.35 E-value=1.5 Score=30.34 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=46.9
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
..+|+++.|+-.. ...+...+ ..++.++....+ ...+++.+.+.. .+||+|++-+...|.
T Consensus 36 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~~~---~~~al~~l~~~~-----~~~dliilD~~l~~~--- 96 (157)
T 3hzh_A 36 PFNVLIVDDSVFT--------VKQLTQIFTSEGFNIIDTAAD---GEEAVIKYKNHY-----PNIDIVTLXITMPKM--- 96 (157)
T ss_dssp ECEEEEECSCHHH--------HHHHHHHHHHTTCEEEEEESS---HHHHHHHHHHHG-----GGCCEEEECSSCSSS---
T ss_pred ceEEEEEeCCHHH--------HHHHHHHHHhCCCeEEEEECC---HHHHHHHHHhcC-----CCCCEEEEeccCCCc---
Confidence 3477777776542 23344444 234555423222 233444443321 157999994443331
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+|+..|+++||+++...
T Consensus 97 ---------~g-------~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 97 ---------DG-------ITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp ---------CH-------HHHHHHHHHHCTTCCEEEEESCC
T ss_pred ---------cH-------HHHHHHHHhhCCCCcEEEEeccC
Confidence 11 34667777888889999998654
No 39
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=84.71 E-value=6.3 Score=25.74 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=45.6
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|.++|+++.|+-.. ...+...+ ..++.+.- ..+ ...+++.+. ..+||+|++ |...
T Consensus 1 m~~~ILivdd~~~~--------~~~l~~~l~~~g~~v~~-~~~---~~~al~~l~-------~~~~dlvll-----D~~~ 56 (122)
T 3gl9_A 1 MSKKVLLVDDSAVL--------RKIVSFNLKKEGYEVIE-AEN---GQIALEKLS-------EFTPDLIVL-----XIMM 56 (122)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHT-------TBCCSEEEE-----CSCC
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHHCCcEEEE-eCC---HHHHHHHHH-------hcCCCEEEE-----eccC
Confidence 77899999998653 12344444 23455542 222 233444332 256899999 4443
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p 121 (177)
.+ .+- -++++.+|+. .++++||++|...
T Consensus 57 p~-------~~g-------~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 57 PV-------MDG-------FTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp SS-------SCH-------HHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred CC-------CcH-------HHHHHHHHhcccccCCCEEEEecCC
Confidence 21 111 2355666654 4678899988654
No 40
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=84.32 E-value=3.5 Score=27.43 Aligned_cols=82 Identities=12% Similarity=0.009 Sum_probs=46.0
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc-cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~-~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+.+.+.. .+.+.-. . +...+++.+.+ .+||+|++-+...|.
T Consensus 8 ~~ilivdd~~~~--------~~~l~~~L~~~~~~v~~~-~---~~~~a~~~l~~-------~~~dlvi~d~~l~~~---- 64 (137)
T 3hdg_A 8 LKILIVEDDTDA--------REWLSTIISNHFPEVWSA-G---DGEEGERLFGL-------HAPDVIITDIRMPKL---- 64 (137)
T ss_dssp CCEEEECSCHHH--------HHHHHHHHHTTCSCEEEE-S---SHHHHHHHHHH-------HCCSEEEECSSCSSS----
T ss_pred cEEEEEeCCHHH--------HHHHHHHHHhcCcEEEEE-C---CHHHHHHHHhc-------cCCCEEEEeCCCCCC----
Confidence 478888887553 2345555532 2333221 1 22333444332 468999995443321
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+ -.++++.+++..|.++||+++...-
T Consensus 65 --------~-------g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 65 --------G-------GLEMLDRIKAGGAKPYVIVISAFSE 90 (137)
T ss_dssp --------C-------HHHHHHHHHHTTCCCEEEECCCCCC
T ss_pred --------C-------HHHHHHHHHhcCCCCcEEEEecCcC
Confidence 1 1246677778888899999886543
No 41
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=83.55 E-value=8.3 Score=26.17 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=46.4
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc-cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~-~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++.|+-.. ...+...+.. ++.+.-. . +...+++.+.+ .+||+|++-+...|.
T Consensus 15 ~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~-------~~~dlvi~D~~l~~~---- 71 (153)
T 3hv2_A 15 PEILLVDSQEVI--------LQRLQQLLSPLPYTLHFA-R---DATQALQLLAS-------REVDLVISAAHLPQM---- 71 (153)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHTTSSCEEEEE-S---SHHHHHHHHHH-------SCCSEEEEESCCSSS----
T ss_pred ceEEEECCCHHH--------HHHHHHHhcccCcEEEEE-C---CHHHHHHHHHc-------CCCCEEEEeCCCCcC----
Confidence 578888887553 2345555532 3444321 1 22334443332 568999995543321
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|+++||+++...
T Consensus 72 --------~g-------~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 72 --------DG-------PTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp --------CH-------HHHHHHHHHHCTTSEEEEECCCC
T ss_pred --------cH-------HHHHHHHHhHCCCCeEEEEECCC
Confidence 11 24566677788899999998654
No 42
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=83.32 E-value=8.4 Score=26.06 Aligned_cols=41 Identities=7% Similarity=-0.107 Sum_probs=27.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+||+|++-+...|. + -.++++.+++..|+++||+++...-
T Consensus 65 ~~~dlii~D~~l~~~------------~-------g~~~~~~l~~~~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 65 ESVDIAILDVEMPVK------------T-------GLEVLEWIRSEKLETKVVVVTTFKR 105 (150)
T ss_dssp SCCSEEEECSSCSSS------------C-------HHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred cCCCEEEEeCCCCCC------------c-------HHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 568999994433221 1 1345677777788999999986543
No 43
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=82.35 E-value=6.1 Score=25.95 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHcc--cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~--~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
|+.+|+++.|+-.. ...+...+.. ++.++-...+| ..+++.+.+ .+||+|++-+..-|.
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~l~~~~~~~~~~~~~~~---~~a~~~~~~-------~~~dlvllD~~l~~~- 61 (130)
T 1dz3_A 1 MSIKVCIADDNREL--------VSLLDEYISSQPDMEVIGTAYNG---QDCLQMLEE-------KRPDILLLDIIMPHL- 61 (130)
T ss_dssp -CEEEEEECSCHHH--------HHHHHHHHHTSTTEEEEEEESSH---HHHHHHHHH-------HCCSEEEEESCCSSS-
T ss_pred CceEEEEEcCCHHH--------HHHHHHHHHhCCCceEEEEeCCH---HHHHHHHhc-------CCCCEEEEecCCCCC-
Confidence 67789999988653 2345555532 33333222222 333333322 457999995443221
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHHHh-CCCCEEEEEcCCC
Q 030474 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRL-SPIMLVVLITPPP 121 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~-~p~~~vil~tp~p 121 (177)
+- .++++.+++. .|..+||+++...
T Consensus 62 -----------~g-------~~~~~~l~~~~~~~~~ii~ls~~~ 87 (130)
T 1dz3_A 62 -----------DG-------LAVLERIRAGFEHQPNVIMLTAFG 87 (130)
T ss_dssp -----------CH-------HHHHHHHHHHCSSCCEEEEEEETT
T ss_pred -----------CH-------HHHHHHHHhcCCCCCcEEEEecCC
Confidence 11 1345556654 4677888887654
No 44
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=82.20 E-value=8.1 Score=25.10 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=47.7
Q ss_pred CC-ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 1 MR-PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 1 ~~-~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
|. ++|+++.|+-.. ...+.+.+. .++.+.-. . +...+++.+.+ .+||+|++-+...|.
T Consensus 1 M~~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~-------~~~dlii~D~~l~~~- 60 (127)
T 3i42_A 1 MSLQQALIVEDYQAA--------AETFKELLEMLGFQADYV-M---SGTDALHAMST-------RGYDAVFIDLNLPDT- 60 (127)
T ss_dssp -CCEEEEEECSCHHH--------HHHHHHHHHHTTEEEEEE-S---SHHHHHHHHHH-------SCCSEEEEESBCSSS-
T ss_pred CCcceEEEEcCCHHH--------HHHHHHHHHHcCCCEEEE-C---CHHHHHHHHHh-------cCCCEEEEeCCCCCC-
Confidence 44 489999887653 133444442 23443322 1 22344444332 468999995543331
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCCCCh
Q 030474 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPPVDE 124 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p~~~ 124 (177)
+ -.++++.+|+. .|.++||+++...-.+
T Consensus 61 -----------~-------g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 61 -----------S-------GLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp -----------B-------HHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred -----------C-------HHHHHHHHHhhhccCCCCEEEEECCcchh
Confidence 1 12566777776 7789999998765433
No 45
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=82.09 E-value=6.4 Score=32.96 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCC---------hhHHH------HHHHHhCCC-ceeecccCCCCCCCCCCCccc
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVD---------EDGRM------EYAKYVNSS-PYINCFLGRPPKYPQPIGKQQ 158 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~---------~~~~~------~~~a~~~~v-p~id~~l~~~~~~l~~dG~~~ 158 (177)
.+.++-+++.+++. +++|+++.||--. .+.+. +.+.+++++ .++|-.=.....|+..|-
T Consensus 275 y~Dlql~L~~~k~~--~~~vlfVi~PVNgkWydytGl~~e~r~~~~~KIk~~l~s~Gf~~i~D~s~~~yepYfm~Dt--- 349 (407)
T 3bma_A 275 YNDLQLVLTQFSKS--KVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFSKDGGEPFFMKDT--- 349 (407)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEECCCCHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCCCEEECTTCTTSTTCBSSS---
T ss_pred HHHHHHHHHHHHHc--CCceEEEEeCCchHHHHhcCCCHHHHHHHHHHHHHHHHHCCCcceeeccccCCCCceeeec---
Confidence 67899999999999 7999999766322 22222 344668898 999854456667777777
Q ss_pred eeecccchhhh
Q 030474 159 LFYHGGCSICY 169 (177)
Q Consensus 159 ~~~~~~~~~~~ 169 (177)
+|+|-++.-
T Consensus 350 --iHlGw~GWv 358 (407)
T 3bma_A 350 --IHLGWLGWL 358 (407)
T ss_dssp --SCBCTTHHH
T ss_pred --ccCchhHHH
Confidence 888887653
No 46
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=81.90 E-value=7.5 Score=25.66 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=45.5
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+. .++.+.-. . +...+++.+.+ .+||+|++-+...+.....
T Consensus 4 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~-------~~~dlvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKGV--------LTAVQLLLKNHFSKVITL-S---SPVSLSTVLRE-------ENPEVVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHTTTSSEEEEE-C---CHHHHHHHHHH-------SCEEEEEEETTTTC-----
T ss_pred ceEEEEeCCHHH--------HHHHHHHHHhCCcEEEEe-C---CHHHHHHHHHc-------CCCCEEEEeCCcCCCCCCC
Confidence 488888888553 234555553 24544421 1 22334443332 4589999955432100000
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
.+ -.++++.+++..|.++||+++...
T Consensus 65 -------~~-------g~~~~~~l~~~~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 65 -------NE-------GLFWLHEIKRQYRDLPVVLFTAYA 90 (140)
T ss_dssp -------CC-------HHHHHHHHHHHCTTCCEEEEEEGG
T ss_pred -------cc-------HHHHHHHHHhhCcCCCEEEEECCC
Confidence 11 124566677777889999998643
No 47
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=81.86 E-value=11 Score=26.68 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=45.9
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.++|+++.|.-.. ...+...+. .++.|.- ..+ ...+++.+. ..+||+|++-+..-|..
T Consensus 7 ~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~---~~~al~~~~-------~~~~dlvl~D~~lp~~~-- 65 (184)
T 3rqi_A 7 DKNFLVIDDNEVF--------AGTLARGLERRGYAVRQ-AHN---KDEALKLAG-------AEKFEFITVXLHLGNDS-- 65 (184)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ECS---HHHHHHHHT-------TSCCSEEEECSEETTEE--
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHHCCCEEEE-eCC---HHHHHHHHh-------hCCCCEEEEeccCCCcc--
Confidence 3588999888653 133444442 2454422 222 233343332 25689999943332211
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
. .++++.+++..|.++||++|...
T Consensus 66 ---------g--------~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 66 ---------G--------LSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp ---------S--------HHHHHHHHHHCTTCEEEEEESSC
T ss_pred ---------H--------HHHHHHHHhcCCCCCEEEEeCCC
Confidence 1 24566777778889999998654
No 48
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=81.52 E-value=7.9 Score=28.15 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=46.5
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|..+|+++.|.-.. ...+...+. .++.+.- ..+ ...+++.+.+ .+||+|++-+..-|.
T Consensus 1 M~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~---~~~a~~~~~~-------~~~dlvllD~~l~~~-- 59 (225)
T 1kgs_A 1 MNVRVLVVEDERDL--------ADLITEALKKEMFTVDV-CYD---GEEGMYMALN-------EPFDVVILDIMLPVH-- 59 (225)
T ss_dssp -CCEEEEECSSHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHHH-------SCCSEEEEESCCSSS--
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHHCCCEEEE-ECC---HHHHHHHHhc-------CCCCEEEEeCCCCCC--
Confidence 66789999888653 123444442 3455542 222 2333333322 468999994433221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- -++++.+++..|+++||+++...
T Consensus 60 ----------~g-------~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 60 ----------DG-------WEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp ----------CH-------HHHHHHHHHTTCCCCEEEEESSC
T ss_pred ----------CH-------HHHHHHHHhcCCCCCEEEEeCCC
Confidence 11 24667778777889999998643
No 49
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=81.19 E-value=5.7 Score=26.44 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=47.4
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc-cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~-~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++.|+-.. ...+...+.. ++.+.-.. +...+ ++.. . ..+||+|++-+...|.
T Consensus 7 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~----~~~~a---~~~l-~---~~~~dlvi~D~~l~~~---- 63 (136)
T 3kto_A 7 PIIYLVDHQKDA--------RAALSKLLSPLDVTIQCFA----SAESF---MRQQ-I---SDDAIGMIIEAHLEDK---- 63 (136)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHTTSSSEEEEES----SHHHH---TTSC-C---CTTEEEEEEETTGGGB----
T ss_pred CeEEEEcCCHHH--------HHHHHHHHHHCCcEEEEeC----CHHHH---HHHH-h---ccCCCEEEEeCcCCCC----
Confidence 588998887653 2345555532 45544211 12222 2222 2 2678999995443320
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
..+-.++++.+|+..|+++||+++...-
T Consensus 64 -------------~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 91 (136)
T 3kto_A 64 -------------KDSGIELLETLVKRGFHLPTIVMASSSD 91 (136)
T ss_dssp -------------TTHHHHHHHHHHHTTCCCCEEEEESSCC
T ss_pred -------------CccHHHHHHHHHhCCCCCCEEEEEcCCC
Confidence 0112356777888888999999986543
No 50
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=81.12 E-value=4.9 Score=26.11 Aligned_cols=82 Identities=15% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|.++|+++.|+-.. ...+...+. .++.+.- .. +....++. . . ..+||+|++-+..-|.
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~l~~~g~~v~~-~~---~~~~a~~~---~-~---~~~~dlvi~D~~l~~~-- 59 (127)
T 2jba_A 1 MARRILVVEDEAPI--------REMVCFVLEQNGFQPVE-AE---DYDSAVNQ---L-N---EPWPDLILLAWMLPGG-- 59 (127)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-EC---SHHHHHTT---C-S---SSCCSEEEEESEETTE--
T ss_pred CCcEEEEEcCCHHH--------HHHHHHHHHHCCceEEE-eC---CHHHHHHH---H-h---ccCCCEEEEecCCCCC--
Confidence 67899999998763 133444442 2454432 11 12223322 2 2 2578999984433221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPP 120 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~ 120 (177)
+- .++++.+++.. |+++||+++..
T Consensus 60 ----------~g-------~~~~~~l~~~~~~~~~~ii~~s~~ 85 (127)
T 2jba_A 60 ----------SG-------IQFIKHLRRESMTRDIPVVMLTAR 85 (127)
T ss_dssp ----------EH-------HHHHHHHHTSTTTTTSCEEEEEET
T ss_pred ----------CH-------HHHHHHHHhCcccCCCCEEEEeCC
Confidence 11 13566777654 67889988754
No 51
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=80.67 E-value=6.7 Score=26.59 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=27.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+||+|++-+...|. + -.++++.+++..|.++||+++...-
T Consensus 60 ~~~dlii~d~~l~~~------------~-------g~~~~~~l~~~~~~~~ii~~s~~~~ 100 (152)
T 3eul_A 60 HLPDVALLDYRMPGM------------D-------GAQVAAAVRSYELPTRVLLISAHDE 100 (152)
T ss_dssp HCCSEEEEETTCSSS------------C-------HHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred cCCCEEEEeCCCCCC------------C-------HHHHHHHHHhcCCCCeEEEEEccCC
Confidence 458999995543321 1 1356677788888999999986543
No 52
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.64 E-value=11 Score=25.55 Aligned_cols=81 Identities=15% Similarity=0.061 Sum_probs=44.8
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
+++|+++.|+-.. ...+...+. .++.+.-. . +...++..+. ..+||+|++-+...|.
T Consensus 3 ~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~-------~~~~dliild~~l~~~--- 60 (155)
T 1qkk_A 3 APSVFLIDDDRDL--------RKAMQQTLELAGFTVSSF-A---SATEALAGLS-------ADFAGIVISDIRMPGM--- 60 (155)
T ss_dssp -CEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-S---CHHHHHHTCC-------TTCCSEEEEESCCSSS---
T ss_pred CCEEEEEeCCHHH--------HHHHHHHHHHcCcEEEEE-C---CHHHHHHHHH-------hCCCCEEEEeCCCCCC---
Confidence 4688888888653 133444442 34554421 1 2233333322 2568999995543321
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+- .++++.+++..|.++||+++..
T Consensus 61 ---------~g-------~~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 61 ---------DG-------LALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp ---------CH-------HHHHHHHHHHCTTSCEEEEECG
T ss_pred ---------CH-------HHHHHHHHhhCCCCCEEEEECC
Confidence 11 2456666777788999998754
No 53
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=79.51 E-value=10 Score=24.67 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=26.4
Q ss_pred CcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
||+|++-+...|. +-.++++.+++..|..+||+++...
T Consensus 47 ~dlvi~D~~l~~~-------------------~g~~~~~~l~~~~~~~~ii~~s~~~ 84 (135)
T 3eqz_A 47 QDIIILDLMMPDM-------------------DGIEVIRHLAEHKSPASLILISGYD 84 (135)
T ss_dssp TEEEEEECCTTTT-------------------HHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred CCEEEEeCCCCCC-------------------CHHHHHHHHHhCCCCCCEEEEEecc
Confidence 8999995543331 1134667788888899999998654
No 54
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=79.42 E-value=15 Score=26.32 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=46.5
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
+++|+++.|.-.. ...+...+. .++.+.-. . +...+++.+. ..+||+|++-+..-|.
T Consensus 4 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~al~~~~-------~~~~dlvl~D~~lp~~--- 61 (208)
T 1yio_A 4 KPTVFVVDDDMSV--------REGLRNLLRSAGFEVETF-D---CASTFLEHRR-------PEQHGCLVLDMRMPGM--- 61 (208)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEEE-S---SHHHHHHHCC-------TTSCEEEEEESCCSSS---
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHHhCCceEEEc-C---CHHHHHHhhh-------ccCCCEEEEeCCCCCC---
Confidence 4689999888653 234444442 34555421 1 2233333322 2568999984433221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- -++++.+++..|+++||+++...
T Consensus 62 ---------~g-------~~~~~~l~~~~~~~~ii~ls~~~ 86 (208)
T 1yio_A 62 ---------SG-------IELQEQLTAISDGIPIVFITAHG 86 (208)
T ss_dssp ---------CH-------HHHHHHHHHTTCCCCEEEEESCT
T ss_pred ---------CH-------HHHHHHHHhcCCCCCEEEEeCCC
Confidence 11 24567777777889999998653
No 55
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=79.13 E-value=6.6 Score=26.35 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=46.5
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
..+|+++.|+-... ..+...+. .++.+.- .. +...+++.+.+ .+||+|++-+...|.
T Consensus 8 ~~~iLivd~~~~~~--------~~l~~~L~~~g~~v~~-~~---~~~~a~~~l~~-------~~~dlii~d~~l~~~--- 65 (147)
T 2zay_A 8 WWRIMLVDTQLPAL--------AASISALSQEGFDIIQ-CG---NAIEAVPVAVK-------THPHLIITEANMPKI--- 65 (147)
T ss_dssp CEEEEEECTTGGGG--------HHHHHHHHHHTEEEEE-ES---SHHHHHHHHHH-------HCCSEEEEESCCSSS---
T ss_pred CceEEEEeCCHHHH--------HHHHHHHHHcCCeEEE-eC---CHHHHHHHHHc-------CCCCEEEEcCCCCCC---
Confidence 45899999886641 23444332 2455442 11 22333443332 358999995543321
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPPV 122 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p~ 122 (177)
+- .++++.+++ ..+.++||+++...-
T Consensus 66 ---------~g-------~~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 66 ---------SG-------MDLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp ---------CH-------HHHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred ---------CH-------HHHHHHHHcCcccCCCCEEEEeCCCC
Confidence 11 245677776 567889999986543
No 56
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=78.58 E-value=9.2 Score=25.39 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=44.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 82 (177)
++|+++.|+-.. ...+.+.+...+.+.- .. +...+++.+.+ .+||+|++-+...|..
T Consensus 4 ~~iLivdd~~~~--------~~~l~~~l~~~~~v~~-~~---~~~~a~~~~~~-------~~~dlvi~D~~l~~~~---- 60 (140)
T 3n53_A 4 KKILIIDQQDFS--------RIELKNFLDSEYLVIE-SK---NEKEALEQIDH-------HHPDLVILDMDIIGEN---- 60 (140)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHTTTSEEEE-ES---SHHHHHHHHHH-------HCCSEEEEETTC--------
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHhcceEEE-eC---CHHHHHHHHhc-------CCCCEEEEeCCCCCCc----
Confidence 588999887653 2446665643344332 11 22344444332 4589999955433321
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCCC
Q 030474 83 TSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPP 121 (177)
Q Consensus 83 ~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~p 121 (177)
-.++++.+++.. |+++||+++...
T Consensus 61 ---------------g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 61 ---------------SPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp -----------------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred ---------------HHHHHHHHHcCcccCCCCEEEEecCC
Confidence 124566777765 788999988653
No 57
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=78.47 E-value=11 Score=24.35 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=44.9
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|.++|+++.|+-.. ...+...+ ..++.+.-. . +...+++.+. ..+||+|++-+...|.
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~al~~~~-------~~~~dlii~D~~~p~~-- 59 (120)
T 3f6p_A 1 MDKKILVVDDEKPI--------ADILEFNLRKEGYEVHCA-H---DGNEAVEMVE-------ELQPDLILLDIMLPNK-- 59 (120)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-S---SHHHHHHHHH-------TTCCSEEEEETTSTTT--
T ss_pred CCCeEEEEECCHHH--------HHHHHHHHHhCCEEEEEe-C---CHHHHHHHHh-------hCCCCEEEEeCCCCCC--
Confidence 77899999998653 23344444 234555432 1 2233444332 2568999994432221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+ =.++++.+|+.. ..+||+++...
T Consensus 60 ----------~-------g~~~~~~lr~~~-~~~ii~~t~~~ 83 (120)
T 3f6p_A 60 ----------D-------GVEVCREVRKKY-DMPIIMLTAKD 83 (120)
T ss_dssp ----------H-------HHHHHHHHHTTC-CSCEEEEEESS
T ss_pred ----------C-------HHHHHHHHHhcC-CCCEEEEECCC
Confidence 1 124556666654 57888887544
No 58
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=77.78 E-value=14 Score=25.01 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=46.2
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+. .++.+.- .. +...+++.+.+ .+||+|++-+...|.
T Consensus 8 ~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~l~~-------~~~dlvi~d~~l~~~---- 64 (154)
T 2rjn_A 8 YTVMLVDDEQPI--------LNSLKRLIKRLGCNIIT-FT---SPLDALEALKG-------TSVQLVISDMRMPEM---- 64 (154)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHTTTCEEEE-ES---CHHHHHHHHTT-------SCCSEEEEESSCSSS----
T ss_pred CeEEEEcCCHHH--------HHHHHHHHHHcCCeEEE-eC---CHHHHHHHHhc-------CCCCEEEEecCCCCC----
Confidence 478888888653 234555553 3455442 11 22333433322 568999995543331
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|.++||+++...
T Consensus 65 --------~g-------~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 65 --------GG-------EVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp --------CH-------HHHHHHHHHHCTTSEEEEEECGG
T ss_pred --------CH-------HHHHHHHHHhCCCCcEEEEecCC
Confidence 11 24566777777889999988643
No 59
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=77.65 E-value=5 Score=26.64 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
.+||+|++-+..-|... .++++.+|+..|.++||+++...
T Consensus 58 ~~~dlvi~D~~l~~~~g-------------------~~~~~~l~~~~~~~~ii~~s~~~ 97 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLG-------------------KPGIVEARALWATVPLIAVSDEL 97 (135)
T ss_dssp CCCSEEEEEEETTGGGG-------------------STTHHHHHGGGTTCCEEEEESCC
T ss_pred cCCCEEEEeCCCCCchH-------------------HHHHHHHHhhCCCCcEEEEeCCC
Confidence 67999999665444221 13566777777788999998754
No 60
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=77.64 E-value=11 Score=24.13 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=42.8
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccc-ccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAA 78 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~N-D~~ 78 (177)
|+++|+++.|+-.. ...+.+.+. .++.+.- .. +...+++.+.+ .+||+|++-+... +.
T Consensus 4 m~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~~~~-------~~~dlvi~d~~~~~~~- 63 (127)
T 2gkg_A 4 MSKKILIVESDTAL--------SATLRSALEGRGFTVDE-TT---DGKGSVEQIRR-------DRPDLVVLAVDLSAGQ- 63 (127)
T ss_dssp --CEEEEECSCHHH--------HHHHHHHHHHHTCEEEE-EC---CHHHHHHHHHH-------HCCSEEEEESBCGGGC-
T ss_pred CCCeEEEEeCCHHH--------HHHHHHHHHhcCceEEE-ec---CHHHHHHHHHh-------cCCCEEEEeCCCCCCC-
Confidence 55689999988653 133444442 2455542 11 22334443332 4589999965443 21
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEE
Q 030474 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLI 117 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~ 117 (177)
+- .++++.+++. .|.++||++
T Consensus 64 -----------~g-------~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 64 -----------NG-------YLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp -----------BH-------HHHHHHHHHSTTTTTSCEEEE
T ss_pred -----------CH-------HHHHHHHhcCccccCCCEEEE
Confidence 11 2456677766 678888888
No 61
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=77.39 E-value=12 Score=24.27 Aligned_cols=85 Identities=12% Similarity=-0.045 Sum_probs=46.3
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|.-.. ...+...+. .++.+.-. . +...+++.+.+. .+||+|++-+...|.
T Consensus 6 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~~------~~~dlvi~d~~l~~~---- 63 (132)
T 2rdm_A 6 VTILLADDEAIL--------LLDFESTLTDAGFLVTAV-S---SGAKAIEMLKSG------AAIDGVVTDIRFCQP---- 63 (132)
T ss_dssp CEEEEECSSHHH--------HHHHHHHHHHTTCEEEEE-S---SHHHHHHHHHTT------CCCCEEEEESCCSSS----
T ss_pred ceEEEEcCcHHH--------HHHHHHHHHHcCCEEEEE-C---CHHHHHHHHHcC------CCCCEEEEeeeCCCC----
Confidence 378888887553 233444442 34555421 1 223334333221 268999995543220
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
.+- .++++.+++..|.++||+++...-.
T Consensus 64 -------~~g-------~~~~~~l~~~~~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 64 -------PDG-------WQVARVAREIDPNMPIVYISGHAAL 91 (132)
T ss_dssp -------SCH-------HHHHHHHHHHCTTCCEEEEESSCCT
T ss_pred -------CCH-------HHHHHHHHhcCCCCCEEEEeCCccH
Confidence 011 2356677777778899999866543
No 62
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=76.33 E-value=14 Score=24.39 Aligned_cols=82 Identities=9% Similarity=0.031 Sum_probs=45.4
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
..+|+++.|+-.. ...+...+. .++.+.-. . +...+++.+.+ .+||+|++-+...|.
T Consensus 7 ~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~-------~~~dlii~d~~l~~~--- 64 (142)
T 3cg4_A 7 KGDVMIVDDDAHV--------RIAVKTILSDAGFHIISA-D---SGGQCIDLLKK-------GFSGVVLLDIMMPGM--- 64 (142)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-S---SHHHHHHHHHT-------CCCEEEEEESCCSSS---
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHHCCeEEEEe-C---CHHHHHHHHHh-------cCCCEEEEeCCCCCC---
Confidence 4578888888553 233444442 24544321 1 22333333322 468999995543321
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p 121 (177)
+- .++++.+++ ..|.++||+++...
T Consensus 65 ---------~g-------~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 65 ---------DG-------WDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp ---------CH-------HHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred ---------CH-------HHHHHHHHhhcccCCCCEEEEECCC
Confidence 11 245677777 67789999988653
No 63
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=76.32 E-value=14 Score=24.38 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=44.6
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++.|+-.. ...+...+. .++.+.-. . +...+++.+.+ .+||+|++-+..-|
T Consensus 7 ~~iLivdd~~~~--------~~~l~~~l~~~g~~v~~~-~---~~~~a~~~l~~-------~~~dlvi~d~~l~~----- 62 (140)
T 3grc_A 7 PRILICEDDPDI--------ARLLNLMLEKGGFDSDMV-H---SAAQALEQVAR-------RPYAAMTVDLNLPD----- 62 (140)
T ss_dssp SEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-C---SHHHHHHHHHH-------SCCSEEEECSCCSS-----
T ss_pred CCEEEEcCCHHH--------HHHHHHHHHHCCCeEEEE-C---CHHHHHHHHHh-------CCCCEEEEeCCCCC-----
Confidence 589999887653 233444442 34554322 1 22344444332 56899999433222
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPP 120 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~ 120 (177)
.+- .++++.+|+ ..|+++||+++..
T Consensus 63 -------~~g-------~~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 63 -------QDG-------VSLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp -------SCH-------HHHHHHHHTSGGGTTCEEEEECTT
T ss_pred -------CCH-------HHHHHHHHhCcccCCCCEEEEecC
Confidence 111 345667776 5678999999854
No 64
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=75.44 E-value=14 Score=24.94 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=45.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc--cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~--~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.+|+++.|.-.. ...+...+.. ++.++-...+ ...+++.+. ..+||+|++-+...|
T Consensus 6 ~~ILivdd~~~~--------~~~l~~~L~~~~~~~v~~~~~~---~~~a~~~l~-------~~~~dlii~D~~l~~---- 63 (153)
T 3cz5_A 6 ARIMLVDDHPIV--------REGYRRLIERRPGYAVVAEAAD---AGEAYRLYR-------ETTPDIVVMDLTLPG---- 63 (153)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHTTSTTEEEEEEESS---HHHHHHHHH-------TTCCSEEEECSCCSS----
T ss_pred cEEEEECCcHHH--------HHHHHHHHhhCCCcEEEEEeCC---HHHHHHHHh-------cCCCCEEEEecCCCC----
Confidence 378888887553 2445555533 3444322222 233333332 256899999433222
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.+- .++++.+++..|.++||+++...-
T Consensus 64 --------~~g-------~~~~~~l~~~~~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 64 --------PGG-------IEATRHIRQWDGAARILIFTMHQG 90 (153)
T ss_dssp --------SCH-------HHHHHHHHHHCTTCCEEEEESCCS
T ss_pred --------CCH-------HHHHHHHHHhCCCCeEEEEECCCC
Confidence 111 245677777778889999886543
No 65
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=75.27 E-value=13 Score=23.71 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|..+|+++.|+-.. ...+...+. .++.+.- ..+ ...+++.+.+ .+||+|++-+..-|.
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~L~~~~~~v~~-~~~---~~~~~~~~~~-------~~~dlvi~d~~l~~~-- 59 (122)
T 1zgz_A 1 MPHHIVIVEDEPVT--------QARLQSYFTQEGYTVSV-TAS---GAGLREIMQN-------QSVDLILLDINLPDE-- 59 (122)
T ss_dssp -CCEEEEECSSHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHHH-------SCCSEEEEESCCSSS--
T ss_pred CCcEEEEEECCHHH--------HHHHHHHHHHCCCeEEE-ecC---HHHHHHHHhc-------CCCCEEEEeCCCCCC--
Confidence 67889999988653 123444442 2454432 112 2333333222 468999984433221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+- .++++.+++ .|..+||+++...-
T Consensus 60 ----------~g-------~~~~~~l~~-~~~~~ii~~s~~~~ 84 (122)
T 1zgz_A 60 ----------NG-------LMLTRALRE-RSTVGIILVTGRSD 84 (122)
T ss_dssp ----------CH-------HHHHHHHHT-TCCCEEEEEESSCC
T ss_pred ----------Ch-------HHHHHHHHh-cCCCCEEEEECCCC
Confidence 11 135566666 56788999886543
No 66
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=75.10 E-value=9 Score=29.46 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=53.4
Q ss_pred CcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCE
Q 030474 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (177)
Q Consensus 34 ~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~ 113 (177)
+-|...|++|.|....+. +.+ |+..+|.+|-+-..-. + ..+.++..+.+.++++.+.+. +++
T Consensus 3 igvfDSG~GGltv~~~l~---~~l-------P~~~~iy~~D~~~~Py----g--~~s~~~i~~~~~~~~~~L~~~--g~d 64 (255)
T 2jfz_A 3 IGVFDSGVGGFSVLKSLL---KAR-------LFDEIIYYGDSARVPY----G--TKDPTTIKQFGLEALDFFKPH--EIE 64 (255)
T ss_dssp EEEEESSSTTHHHHHHHH---HTT-------CCSEEEEEECTTTCCC----T--TSCHHHHHHHHHHHHHHHGGG--CCS
T ss_pred EEEEECCccHHHHHHHHH---HHC-------CCCCEEEEeCCCCCCC----C--CCCHHHHHHHHHHHHHHHHHC--CCC
Confidence 346788999987655443 333 4667778885432211 1 247888999999999999887 466
Q ss_pred EEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 114 VVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 114 vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.|++.-.-.. ......+++..++|++
T Consensus 65 ~iviaCNTa~-~~~~~~lr~~~~iPvi 90 (255)
T 2jfz_A 65 LLIVACNTAS-ALALEEMQKYSKIPIV 90 (255)
T ss_dssp CEEECCHHHH-HHTHHHHHHHCSSCEE
T ss_pred EEEEeCchhh-HHHHHHHHHhCCCCEE
Confidence 6665432111 0123344455566666
No 67
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=74.95 E-value=15 Score=24.12 Aligned_cols=84 Identities=14% Similarity=0.031 Sum_probs=46.3
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc--ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~--~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
..+|+++.|+-.. ...+...+. .++.++....+ ...+++.+.+ .+||+|++-+...|.
T Consensus 8 ~~~iLivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~~-------~~~dlii~d~~l~~~-- 67 (143)
T 3cnb_A 8 DFSILIIEDDKEF--------ADMLTQFLENLFPYAKIKIAYN---PFDAGDLLHT-------VKPDVVMLDLMMVGM-- 67 (143)
T ss_dssp -CEEEEECSCHHH--------HHHHHHHHHHHCTTCEEEEECS---HHHHHHHHHH-------TCCSEEEEETTCTTS--
T ss_pred CceEEEEECCHHH--------HHHHHHHHHhccCccEEEEECC---HHHHHHHHHh-------cCCCEEEEecccCCC--
Confidence 3578888887653 133444442 35552222222 2333433332 458999995543221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p~ 122 (177)
+ -.++++.+++ ..|.++||+++...-
T Consensus 68 ----------~-------g~~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 68 ----------D-------GFSICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp ----------C-------HHHHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred ----------c-------HHHHHHHHHhCccccCCcEEEEeCCCC
Confidence 1 1245677777 567899999986543
No 68
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=73.60 E-value=14 Score=28.84 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=55.6
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|...|+||.|....+. +.++ +.=+|.+| |..+.. .| ..+.++..+...++++.+.+. ++
T Consensus 7 ~IgvfDSGvGGltv~~~i~---~~lP-------~~~~iy~~--D~a~~P--YG--~ks~~~i~~~~~~~~~~L~~~--g~ 68 (269)
T 3ist_A 7 AIGFIDSGVGGLTVVREVL---KQLP-------HEQVYYLG--DTARCP--YG--PRDKEEVAKFTWEMTNFLVDR--GI 68 (269)
T ss_dssp CEEEEESSSTTHHHHHHHH---HHCT-------TCCEEEEE--CGGGCC--CT--TSCHHHHHHHHHHHHHHHHHT--TC
T ss_pred cEEEEECCccHHHHHHHHH---HHCC-------CCcEEEEe--CCCCCC--CC--CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 4567889999988654443 3443 33455667 444321 11 258899999999999999987 57
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+.|++.-.- ........+++...+|+|
T Consensus 69 ~~IVIACNT-a~~~al~~lr~~~~iPvi 95 (269)
T 3ist_A 69 KMLVIACNT-ATAAALYDIREKLDIPVI 95 (269)
T ss_dssp SEEEECCHH-HHHHHHHHHHHHCSSCEE
T ss_pred CEEEEeCCC-ccHHHHHHHHHhcCCCEE
Confidence 777775321 111123455556667776
No 69
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=73.48 E-value=16 Score=23.87 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=45.1
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.++|+++.|+-.. ...+...+. .++.+. ...+| ..+++.+.+ .+||+|++-+...|.
T Consensus 3 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~-~~~~~---~~al~~~~~-------~~~dlvl~D~~l~~~--- 60 (132)
T 3crn_A 3 LKRILIVDDDTAI--------LDSTKQILEFEGYEVE-IAATA---GEGLAKIEN-------EFFNLALFXIKLPDM--- 60 (132)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEE-EESSH---HHHHHHHHH-------SCCSEEEECSBCSSS---
T ss_pred ccEEEEEeCCHHH--------HHHHHHHHHHCCceEE-EeCCH---HHHHHHHhc-------CCCCEEEEecCCCCC---
Confidence 3578898888653 123444442 345544 22222 333433322 468999994433221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|.++||+++...
T Consensus 61 ---------~g-------~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 61 ---------EG-------TELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp ---------BH-------HHHHHHHHHHCTTSEEEEEESCC
T ss_pred ---------ch-------HHHHHHHHhhCCCCcEEEEeccc
Confidence 11 23556677777789999988654
No 70
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=73.41 E-value=12 Score=27.44 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=45.3
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc--ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~--~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.+|+++-|.-.. ...+...+. .++.++-...++ . +.+...+. ..+||+|++ |...+
T Consensus 8 ~~IlivdD~~~~--------~~~l~~~L~~~~~~~v~~~~~~~---~---~~~~~~~~---~~~~dlvll-----D~~mp 65 (225)
T 3klo_A 8 LNVRMLSDVCMQ--------SRLLKEALESKLPLALEITPFSE---L---WLEENKPE---SRSIQMLVI-----DYSRI 65 (225)
T ss_dssp EEEEEESCCSHH--------HHHHHHHHHHHSSEEEEEECGGG---H---HHHTTCSG---GGGCCEEEE-----EGGGC
T ss_pred eEEEEEcCcHHH--------HHHHHHHHhhCCCceEEEEeCCc---H---HHHHHHhh---ccCCCEEEE-----eCCCC
Confidence 478888887553 234555553 244443322111 1 11222222 257899999 54432
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHH-hCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKR-LSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~-~~p~~~vil~tp~p 121 (177)
+ . +=-++++.+++ ..|+++||++|...
T Consensus 66 ~---------~-----~G~~~~~~lr~~~~~~~~ii~lt~~~ 93 (225)
T 3klo_A 66 S---------D-----DVLTDYSSFKHISCPDAKEVIINCPQ 93 (225)
T ss_dssp C---------H-----HHHHHHHHHHHHHCTTCEEEEEEECT
T ss_pred C---------C-----CHHHHHHHHHHhhCCCCcEEEEECCc
Confidence 1 1 11345677777 78899999998543
No 71
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=72.95 E-value=18 Score=24.07 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=43.2
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcc--cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~--~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
.++|+++.|+-.. ...+...+.. ++.++-...++ ..+++.+.+. .+||+|++-+...|..
T Consensus 13 ~~~vlivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~~~---~~al~~l~~~------~~~dlvilD~~l~~~~- 74 (145)
T 3kyj_B 13 PYNVMIVDDAAMM--------RLYIASFIKTLPDFKVVAQAANG---QEALDKLAAQ------PNVDLILLDIEMPVMD- 74 (145)
T ss_dssp SEEEEEECSCHHH--------HHHHHHHHTTCTTEEEEEEESSH---HHHHHHHHHC------TTCCEEEECTTSCCCT-
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHhCCCceEEEEECCH---HHHHHHHhcC------CCCCEEEEeCCCCCCC-
Confidence 4577777776552 2456666633 33433222222 3334333321 2689999944433311
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
- .++++.+|+..+ .++++++....
T Consensus 75 -----------g-------~~~~~~lr~~~~-~~iiil~~~~~ 98 (145)
T 3kyj_B 75 -----------G-------MEFLRHAKLKTR-AKICMLSSVAV 98 (145)
T ss_dssp -----------T-------CHHHHHHHHHCC-CEEC-CBSSCS
T ss_pred -----------H-------HHHHHHHHhcCC-CCeEEEEEecc
Confidence 1 135566777765 78888876433
No 72
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=72.74 E-value=2.1 Score=31.09 Aligned_cols=65 Identities=5% Similarity=-0.118 Sum_probs=40.7
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+.. |.-.+.=...|++.+ ..++++...++-.+. ....+.+.+... .+.|+|++.-|+
T Consensus 11 ~ii~tGdEl~~-G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~----~~~DlVittGG~ 76 (164)
T 3pzy_A 11 RVIIASTRASS-GEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAID----DDVDVILTSGGT 76 (164)
T ss_dssp EEEEECHHHHC-----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHH----TTCSEEEEESCC
T ss_pred EEEEECCCCCC-CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHh----CCCCEEEECCCC
Confidence 48899999986 322222233455555 346777777777777 666666665542 357999988775
No 73
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=72.41 E-value=2.8 Score=31.11 Aligned_cols=67 Identities=10% Similarity=-0.090 Sum_probs=44.3
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHc----ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYC----RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~----~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+.. |.-.+.=...|++.+. .++.+...++-++......+.+.+... ..+.|+|++.-|+
T Consensus 18 ~IistGdEl~~-g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~---~~~~DlVIttGGt 88 (189)
T 1jlj_A 18 GVLTVSDSCFR-NLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCD---EKELNLILTTGGT 88 (189)
T ss_dssp EEEEECHHHHT-TSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEECCccCC-CcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhh---cCCCCEEEEcCCC
Confidence 58899999987 3322222334666663 367788888877776666666665543 1367999988876
No 74
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=71.34 E-value=2.4 Score=30.87 Aligned_cols=67 Identities=6% Similarity=-0.054 Sum_probs=43.3
Q ss_pred EEEEecccCccccCC----CChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 5 IVLFGDSITQQSFGS----AGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 5 I~~~GDSit~gg~~~----~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
|+-+|||.+++.... +.=...|++.+ ..++++...++=++......+.+..... ..+.|+|+...|+
T Consensus 20 iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a---~~~~DlVittGG~ 91 (178)
T 3iwt_A 20 VITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS---IDEVDVIISTGGT 91 (178)
T ss_dssp EEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT---CTTCCEEEEESCC
T ss_pred EEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEecCCc
Confidence 788899987532211 11123455555 4578888888888776666655554433 3678999999886
No 75
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=70.90 E-value=5.9 Score=28.63 Aligned_cols=65 Identities=11% Similarity=-0.080 Sum_probs=41.2
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+ + .-.+.=...|++.+ ..++.+...++-++......+.+.+... ..+.|+|++.-|+
T Consensus 17 ~Ii~tGdEl--g-~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVittGG~ 82 (169)
T 1y5e_A 17 KIVTISDTR--T-EETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYH---KEDVDVVLTNGGT 82 (169)
T ss_dssp EEEEECSSC--C-TTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHT---CTTCSEEEEECCC
T ss_pred EEEEEcCcc--C-eeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEEcCCC
Confidence 478889999 2 11111122355544 3467888888888777666666666543 2368999988776
No 76
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=70.86 E-value=2.8 Score=30.22 Aligned_cols=67 Identities=9% Similarity=-0.154 Sum_probs=43.9
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+.. |.-.+.=...|++.+ ..++.+...++-++......+.+.+... ..+.|+|++.-|+
T Consensus 5 ~Ii~tGdEl~~-G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVittGG~ 72 (164)
T 2is8_A 5 GILTVSDKGFR-GERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWAD---REGLDLILTNGGT 72 (164)
T ss_dssp EEEEECHHHHH-TSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEEcCcccC-CCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEcCCC
Confidence 58889999876 332223334566666 3467777777777776666666665543 1267999988775
No 77
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=70.64 E-value=15 Score=28.36 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=55.0
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|...|++|.+... .+.+..+ +..++.+|-++..-.+ ..+.++..+.+.++++.+.+. ++
T Consensus 5 ~IgvfDSGvGGltv~~---~i~~~lP-------~~~~iy~~D~~~~Pyg------~~s~~~i~~~~~~~~~~L~~~--g~ 66 (267)
T 2gzm_A 5 AIGVIDSGVGGLTVAK---ELIRQLP-------KERIIYLGDTARCPYG------PRSREEVRQFTWEMTEHLLDL--NI 66 (267)
T ss_dssp CEEEEESSSTTHHHHH---HHHHHCT-------TSCEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHHTT--TC
T ss_pred cEEEEeCCccHHHHHH---HHHHHCC-------CCCEEEecCCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 4567889999977543 3334443 4456677865533211 247888999999999999876 57
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+.|++.-.-. .......+++...+|++
T Consensus 67 d~iviaCNTa-s~~~l~~lr~~~~iPvi 93 (267)
T 2gzm_A 67 KMLVIACNTA-TAVVLEEMQKQLPIPVV 93 (267)
T ss_dssp SEEEECCHHH-HHHHHHHHHHHCSSCEE
T ss_pred CEEEEeCchh-hHHHHHHHHHhCCCCEE
Confidence 7777753211 11134455555667766
No 78
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=69.80 E-value=17 Score=22.61 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=46.4
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.++|+++.|+-.. ...+...+. .++.+.-.. +....++.+.+ .+||+|++-+...+.
T Consensus 1 ~~~iliv~~~~~~--------~~~l~~~l~~~g~~v~~~~----~~~~~~~~l~~-------~~~dlii~d~~~~~~--- 58 (119)
T 2j48_A 1 AGHILLLEEEDEA--------ATVVCEMLTAAGFKVIWLV----DGSTALDQLDL-------LQPIVILMAWPPPDQ--- 58 (119)
T ss_dssp CCEEEEECCCHHH--------HHHHHHHHHHTTCEEEEES----CHHHHHHHHHH-------HCCSEEEEECSTTCC---
T ss_pred CCEEEEEeCCHHH--------HHHHHHHHHhCCcEEEEec----CHHHHHHHHHh-------cCCCEEEEecCCCCC---
Confidence 3578888887553 233444442 345544321 22334443332 457999985543221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCh
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPVDE 124 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~p~~~ 124 (177)
+. .++++.+++.. ++++||+++..+-..
T Consensus 59 ---------~~-------~~~~~~l~~~~~~~~~~ii~~~~~~~~~ 88 (119)
T 2j48_A 59 ---------SC-------LLLLQHLREHQADPHPPLVLFLGEPPVD 88 (119)
T ss_dssp ---------TH-------HHHHHHHHHTCCCSSCCCEEEESSCCSS
T ss_pred ---------CH-------HHHHHHHHhccccCCCCEEEEeCCCCch
Confidence 11 24566777664 678899888765433
No 79
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=69.78 E-value=21 Score=23.52 Aligned_cols=83 Identities=19% Similarity=0.094 Sum_probs=45.5
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
+++|+++.|+-.. ...+...+...+.+.- ..+ ...+++.+.. .+||+|++-+..-|.
T Consensus 1 ~~~Ilivdd~~~~--------~~~l~~~l~~~~~v~~-~~~---~~~a~~~~~~-------~~~dlvl~D~~lp~~---- 57 (139)
T 2jk1_A 1 APAILLVDDEPHS--------LAAMKLALEDDFDVLT-AQG---AEAAIAILEE-------EWVQVIICDQRMPGR---- 57 (139)
T ss_dssp -CEEEEECSSHHH--------HHHHHHHHTTTSCEEE-ESS---HHHHHHHHHH-------SCEEEEEEESCCSSS----
T ss_pred CCeEEEEcCCHHH--------HHHHHHHhhcCceEEE-cCC---HHHHHHHHhc-------CCCCEEEEeCCCCCC----
Confidence 3578888887553 2345555543454432 212 2333333322 458999984433221
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+- .++++.+++..|..++|+++...-
T Consensus 58 --------~g-------~~~~~~l~~~~~~~~ii~~s~~~~ 83 (139)
T 2jk1_A 58 --------TG-------VDFLTEVRERWPETVRIIITGYTD 83 (139)
T ss_dssp --------CH-------HHHHHHHHHHCTTSEEEEEESCTT
T ss_pred --------cH-------HHHHHHHHHhCCCCcEEEEeCCCC
Confidence 11 245666777778889999886553
No 80
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=69.46 E-value=7.9 Score=25.87 Aligned_cols=82 Identities=11% Similarity=0.029 Sum_probs=44.3
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcE-EEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADV-LLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v-~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.+|+++.|+-.. ...+...+. .+..+ +....+ ...+++.+. ..+||+|++-+...|.
T Consensus 6 ~~ILivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~-------~~~~dlii~D~~l~~~--- 64 (144)
T 3kht_A 6 KRVLVVEDNPDD--------IALIRRVLDRKDIHCQLEFVDN---GAKALYQVQ-------QAKYDLIILDIGLPIA--- 64 (144)
T ss_dssp EEEEEECCCHHH--------HHHHHHHHHHTTCCEEEEEESS---HHHHHHHHT-------TCCCSEEEECTTCGGG---
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHhcCCCeeEEEECC---HHHHHHHhh-------cCCCCEEEEeCCCCCC---
Confidence 489999887553 133444442 23331 111112 233343332 2568999994332221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p 121 (177)
+ -.++++.+|+ ..|.++||+++...
T Consensus 65 ---------~-------g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 65 ---------N-------GFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp ---------C-------HHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred ---------C-------HHHHHHHHHhcccccCCCEEEEeCCC
Confidence 1 1346677777 56788999998654
No 81
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=69.36 E-value=19 Score=28.00 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=54.8
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHH-hCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKR-LSPI 111 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~-~~p~ 111 (177)
.+-|...|++|.|... .+.+..+ +.-++.+|-++..--+ ..+.++..+.+.++++.+.+ . +
T Consensus 5 ~IgvfDSGvGGltv~~---~i~~~lP-------~~~~iy~~D~~~~PyG------~~s~~~i~~~~~~~~~~L~~~~--g 66 (272)
T 1zuw_A 5 PIGVIDSGVGGLTVAK---EIMRQLP-------KENIIYVGDTKRCPYG------PRPEEEVLQYTWELTNYLLENH--H 66 (272)
T ss_dssp CEEEEESSSTTHHHHH---HHHHHST-------TCCEEEEECGGGCCCS------SSCHHHHHHHHHHHHHHHHHHS--C
T ss_pred eEEEEeCCcchHHHHH---HHHHhCC-------CCcEEEeccCCCCCCC------CCCHHHHHHHHHHHHHHHHhhc--C
Confidence 3567789999976543 3334433 4556788866543221 24788899999999999988 6 5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 112 MLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 112 ~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
++.|++.-.-. .......+++...+|.+
T Consensus 67 ~d~iViACNTa-s~~~l~~lr~~~~iPVi 94 (272)
T 1zuw_A 67 IKMLVIACNTA-TAIALDDIQRSVGIPVV 94 (272)
T ss_dssp CSEEEECCHHH-HHHHHHHHHHHCSSCEE
T ss_pred CCEEEEeCchh-hHHHHHHHHHHCCCCEE
Confidence 67777653211 11134444555566666
No 82
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=69.12 E-value=18 Score=27.00 Aligned_cols=81 Identities=11% Similarity=0.000 Sum_probs=45.1
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++-|.-.. ...+...+. .++.+.- ..+ ...+++.+.+ .+||+|++-+...|.
T Consensus 24 ~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~---~~~al~~~~~-------~~~dlvllD~~lp~~---- 80 (250)
T 3r0j_A 24 ARVLVVDDEANI--------VELLSVSLKFQGFEVYT-ATN---GAQALDRARE-------TRPDAVILDVXMPGM---- 80 (250)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHHH-------HCCSEEEEESCCSSS----
T ss_pred ceEEEEECCHHH--------HHHHHHHHHHCCCEEEE-ECC---HHHHHHHHHh-------CCCCEEEEeCCCCCC----
Confidence 467777776442 233444442 3455542 222 2334443332 468999995443331
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+ -.++++.+|+..|.++||+++...
T Consensus 81 --------~-------g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 81 --------D-------GFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp --------C-------HHHHHHHHHHTTCCCCEEEEECST
T ss_pred --------C-------HHHHHHHHHhcCCCCCEEEEECCC
Confidence 1 124667778887889999998654
No 83
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=69.05 E-value=4 Score=30.28 Aligned_cols=65 Identities=9% Similarity=-0.166 Sum_probs=43.5
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+..||.+.. |. .+.=...+++.+ ..++++...++-.+.-....+.+.+.+. .+.|+|+..-|+
T Consensus 34 aIistGdEl~~-G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~----~~~DlVIttGGt 99 (185)
T 3rfq_A 34 LVVVVDDRTAH-GD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVI----GGVDLVVSVGGT 99 (185)
T ss_dssp EEEEECHHHHT-TC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHH----TTCSEEEEESCC
T ss_pred EEEEECcccCC-CC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEECCCC
Confidence 47889999986 43 433334566555 3467788888777776666666665432 457999998775
No 84
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=69.01 E-value=20 Score=23.07 Aligned_cols=82 Identities=12% Similarity=-0.019 Sum_probs=45.1
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
+.+|+++.|+-.. ...+...+. .++.+.- .. +....++.+. ..+||+|++-+...|.
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~l~~~~~~v~~-~~---~~~~~~~~~~-------~~~~dlvi~D~~l~~~--- 60 (126)
T 1dbw_A 3 DYTVHIVDDEEPV--------RKSLAFMLTMNGFAVKM-HQ---SAEAFLAFAP-------DVRNGVLVTDLRMPDM--- 60 (126)
T ss_dssp CCEEEEEESSHHH--------HHHHHHHHHHTTCEEEE-ES---CHHHHHHHGG-------GCCSEEEEEECCSTTS---
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHHhCCcEEEE-eC---CHHHHHHHHh-------cCCCCEEEEECCCCCC---
Confidence 3588999888653 133444442 2454432 11 2233333332 2568999995443221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|..+||+++...
T Consensus 61 ---------~g-------~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 61 ---------SG-------VELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp ---------CH-------HHHHHHHHHTTCCCCEEEEECTT
T ss_pred ---------CH-------HHHHHHHHhcCCCCCEEEEECCC
Confidence 11 23456677777788999998654
No 85
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=68.26 E-value=22 Score=23.19 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=46.2
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.++|+++.|+-.. ...+.+.+. .++.+.-. + +....+..+.+ ..+||+|++-+...|.
T Consensus 7 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~--~--~~~~a~~~~~~------~~~~dlvi~D~~l~~~--- 65 (136)
T 3hdv_A 7 RPLVLVVDDNAVN--------REALILYLKSRGIDAVGA--D--GAEEARLYLHY------QKRIGLMITDLRMQPE--- 65 (136)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCCEEEE--S--SHHHHHHHHHH------CTTEEEEEECSCCSSS---
T ss_pred CCeEEEECCCHHH--------HHHHHHHHHHcCceEEEe--C--CHHHHHHHHHh------CCCCcEEEEeccCCCC---
Confidence 3578888887553 233444442 24555432 1 22333333322 1348999994433221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHh-CCCCEEEEEcCCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRL-SPIMLVVLITPPPV 122 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~-~p~~~vil~tp~p~ 122 (177)
+ -.++++.+++. .|.++||+++...-
T Consensus 66 ---------~-------g~~~~~~l~~~~~~~~~ii~~s~~~~ 92 (136)
T 3hdv_A 66 ---------S-------GLDLIRTIRASERAALSIIVVSGDTD 92 (136)
T ss_dssp ---------C-------HHHHHHHHHTSTTTTCEEEEEESSCC
T ss_pred ---------C-------HHHHHHHHHhcCCCCCCEEEEeCCCC
Confidence 1 12466777776 67899999986553
No 86
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=68.11 E-value=20 Score=22.61 Aligned_cols=80 Identities=9% Similarity=-0.007 Sum_probs=43.4
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+. .++.+.- ..+ ....++.+.+ .+||+|++-+...|.
T Consensus 2 ~~ilivdd~~~~--------~~~l~~~l~~~~~~v~~-~~~---~~~a~~~~~~-------~~~dlvl~D~~l~~~---- 58 (116)
T 3a10_A 2 KRILVVDDEPNI--------RELLKEELQEEGYEIDT-AEN---GEEALKKFFS-------GNYDLVILDIEMPGI---- 58 (116)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHHH-------SCCSEEEECSCCSSS----
T ss_pred cEEEEEeCCHHH--------HHHHHHHHHHCCCEEEE-eCC---HHHHHHHHhc-------CCCCEEEEECCCCCC----
Confidence 378888888653 233444442 3455432 112 2333333322 468999994332221
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+- .++++.+++..|..+||+++..
T Consensus 59 --------~g-------~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 59 --------SG-------LEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp --------CH-------HHHHHHHHHHCTTCCEEEEESC
T ss_pred --------CH-------HHHHHHHHccCCCCeEEEEECC
Confidence 11 2456667777778889998865
No 87
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=68.01 E-value=2.6 Score=30.97 Aligned_cols=66 Identities=8% Similarity=-0.112 Sum_probs=42.6
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
--|+.+||.+.. |.-.+.=...|++.+ ..++.+...++-++......+.+.+... +.|+|+..-|+
T Consensus 6 v~IistGdEll~-G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~-----~~DlVittGG~ 72 (172)
T 3kbq_A 6 ASVITVGNEILK-GRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE-----VSDLVVSSGGL 72 (172)
T ss_dssp EEEEEECHHHHT-TSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH-----HCSEEEEESCC
T ss_pred EEEEEEcccccC-CcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 358899999987 332222223355544 3478888888777776666666665442 37999988775
No 88
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=67.60 E-value=22 Score=25.36 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=42.7
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|.++|+++.|.-.. ...+...+. .++.++-...+| ..+++.+.+ .+||+|++-+..-|.
T Consensus 12 m~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~~~~~---~~al~~~~~-------~~~dlvi~D~~~p~~-- 71 (205)
T 1s8n_A 12 VPRRVLIAEDEALI--------RMDLAEMLREEGYEIVGEAGDG---QEAVELAEL-------HKPDLVIMDVKMPRR-- 71 (205)
T ss_dssp CCCEEEEECSSHHH--------HHHHHHHHHHTTCEEEEEESSH---HHHHHHHHH-------HCCSEEEEESSCSSS--
T ss_pred CCccEEEEECCHHH--------HHHHHHHHHHCCCEEEEEeCCH---HHHHHHHhh-------cCCCEEEEeCCCCCC--
Confidence 56689999888653 233444442 355554222222 333333322 458999994433221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
+- -++++.+++..| .+||+++.
T Consensus 72 ----------~g-------~~~~~~l~~~~~-~pii~lt~ 93 (205)
T 1s8n_A 72 ----------DG-------IDAASEIASKRI-APIVVLTA 93 (205)
T ss_dssp ----------CH-------HHHHHHHHHTTC-SCEEEEEE
T ss_pred ----------Ch-------HHHHHHHHhcCC-CCEEEEec
Confidence 11 135566666655 47777764
No 89
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=67.06 E-value=3.1 Score=30.07 Aligned_cols=66 Identities=8% Similarity=-0.089 Sum_probs=41.8
Q ss_pred eEEEEecccCccccCCCChHHHHHHH----H-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADA----Y-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~----l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+.. |.-.+.=...|++. + ..++++...++-++.-....+.+.+... .+.|+|+..-|+
T Consensus 9 ~Ii~~GdEl~~-G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~----~~~DlVittGG~ 79 (167)
T 2g2c_A 9 AIIVVSDRIST-GTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALK----QGARFIITAGGT 79 (167)
T ss_dssp EEEEECHHHHH-TSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHH----TTCSEEEEESCC
T ss_pred EEEEECCcccC-CceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHh----CCCCEEEECCCC
Confidence 47899999986 42222223346666 5 2356777777777776666666665543 247999988775
No 90
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=66.89 E-value=21 Score=23.56 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=42.9
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc--cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~--~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.+|+++.|+-.. ...+...+.. ++.++....++ ..+++.+.+ .+||+|++-+...|.
T Consensus 10 ~~iLivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~~~---~~al~~l~~-------~~~dlvi~d~~l~~~--- 68 (143)
T 2qv0_A 10 MKVIIVEDEFLA--------QQELSWLINTHSQMEIVGSFDDG---LDVLKFLQH-------NKVDAIFLDINIPSL--- 68 (143)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHHSCCEEEEEESCH---HHHHHHHHH-------CCCSEEEECSSCSSS---
T ss_pred eEEEEEcCCHHH--------HHHHHHHHHhCCCceEEEEeCCH---HHHHHHHHh-------CCCCEEEEecCCCCC---
Confidence 478888887653 1334444421 34443332222 333333322 458999994433221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+- .++++.+++..+..+||+++..
T Consensus 69 ---------~g-------~~~~~~l~~~~~~~~ii~~s~~ 92 (143)
T 2qv0_A 69 ---------DG-------VLLAQNISQFAHKPFIVFITAW 92 (143)
T ss_dssp ---------CH-------HHHHHHHTTSTTCCEEEEEESC
T ss_pred ---------CH-------HHHHHHHHccCCCceEEEEeCC
Confidence 11 2456667776677778888765
No 91
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=66.68 E-value=20 Score=24.10 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=46.2
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccC--cEEEcccCCcchhhHHHhhcccCCC--CCCCCCcEEEEEecccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKA--DVLLRGYGGYNTRWALFLLHHIFPL--DNSNPPVATTIFFGAND 76 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~--~v~N~G~~G~ts~~~l~~l~~~~~~--~~~~~pd~Vvi~~G~ND 76 (177)
..+|+++.|+-.. ...+.+.+. .+. .+.-. .+| ..+++.+...... ....+||+|++-+...|
T Consensus 4 ~~~ILivddd~~~--------~~~l~~~L~~~g~~~~v~~~-~~~---~~al~~l~~~~~~~~~~~~~~dliilD~~l~~ 71 (152)
T 3heb_A 4 SVTIVMIEDDLGH--------ARLIEKNIRRAGVNNEIIAF-TDG---TSALNYLFGDDKSGRVSAGRAQLVLLDLNLPD 71 (152)
T ss_dssp -CEEEEECCCHHH--------HHHHHHHHHHTTCCCCEEEE-SSH---HHHHHHHHCTTSSSGGGTTCBEEEEECSBCSS
T ss_pred CceEEEEeCCHHH--------HHHHHHHHHhCCCcceEEEe-CCH---HHHHHHHhccccccccccCCCCEEEEeCCCCC
Confidence 4689999887553 234444442 233 33322 222 3444444311100 01367999999443322
Q ss_pred ccccCCCCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCCC
Q 030474 77 AALFGRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPP 121 (177)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p 121 (177)
. + -.++++.+|+ ..|+++||+++...
T Consensus 72 ~------------~-------g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 72 M------------T-------GIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp S------------B-------HHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred C------------c-------HHHHHHHHHhcccccCCCEEEEecCC
Confidence 1 1 1245666776 56788899998654
No 92
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=66.66 E-value=33 Score=24.81 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=44.4
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++.|.-.. ...+...+. .++.+.- ..+ ...+++.+.+ .+||+|++-+..-|.
T Consensus 8 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~---~~~a~~~~~~-------~~~dlvllD~~l~~~---- 64 (233)
T 1ys7_A 8 PRVLVVDDDSDV--------LASLERGLRLSGFEVAT-AVD---GAEALRSATE-------NRPDAIVLDINMPVL---- 64 (233)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHHH-------SCCSEEEEESSCSSS----
T ss_pred CeEEEEeCCHHH--------HHHHHHHHHhCCCEEEE-ECC---HHHHHHHHHh-------CCCCEEEEeCCCCCC----
Confidence 478888887553 123444442 3455542 222 2333333322 468999994433221
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+- .++++.+++..|.++||+++..
T Consensus 65 --------~g-------~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 65 --------DG-------VSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp --------CH-------HHHHHHHHHTTCCCCEEEEECC
T ss_pred --------CH-------HHHHHHHHhcCCCCCEEEEEcC
Confidence 11 2466777777788999998854
No 93
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=66.13 E-value=14 Score=24.47 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=46.9
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+. .++.+.- .. +...+++.+... ..+||+|++-+...|.
T Consensus 4 ~~ilivdd~~~~--------~~~l~~~l~~~g~~v~~-~~---~~~~a~~~~~~~-----~~~~dlvi~d~~l~~~---- 62 (143)
T 3jte_A 4 AKILVIDDESTI--------LQNIKFLLEIDGNEVLT-AS---SSTEGLRIFTEN-----CNSIDVVITDMKMPKL---- 62 (143)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHHHHT-----TTTCCEEEEESCCSSS----
T ss_pred CEEEEEcCCHHH--------HHHHHHHHHhCCceEEE-eC---CHHHHHHHHHhC-----CCCCCEEEEeCCCCCC----
Confidence 489999887553 234444442 2444432 11 223344433321 2578999995544331
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|.++||+++...
T Consensus 63 --------~g-------~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 63 --------SG-------MDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp --------CH-------HHHHHHHHHHCTTCEEEEEECTT
T ss_pred --------cH-------HHHHHHHHHhCCCCeEEEEECCC
Confidence 11 24566677778889999998654
No 94
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=65.60 E-value=35 Score=26.47 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=56.5
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|...|+||.|+...+. +.++ +.=++.+|-|.-.--+ .-+.++..+.+.++++.+.+. ++
T Consensus 9 pIgvfDSGvGGLtv~~~i~---~~lp-------~~~~iy~~D~a~~PYG------~~~~~~i~~~~~~~~~~L~~~--g~ 70 (268)
T 3out_A 9 PIGVFDSGIGGLTIVKNLM---SILP-------NEDIIYFGDIARIPYG------TKSRATIQKFAAQTAKFLIDQ--EV 70 (268)
T ss_dssp CEEEEESSSTTHHHHHHHH---HHCT-------TCCEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHHHT--TC
T ss_pred cEEEEECCCChHHHHHHHH---HHCC-------CCcEEEecCCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 4668889999998765443 3333 2224556644322111 247899999999999999987 67
Q ss_pred EEEEEcCCCCChhHHHHHHHHhC-CCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVN-SSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~-~vp~id 141 (177)
+.|++.-. .........+++.. .+|+|.
T Consensus 71 ~~iVIACN-Ta~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 71 KAIIIACN-TISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp SEEEECCH-HHHHHHHHHHHHHHTTSCEEE
T ss_pred CEEEEeCC-ChHHHHHHHHHHhcCCCCEEe
Confidence 77777532 11112345566666 789884
No 95
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=65.31 E-value=29 Score=27.06 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=56.1
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|.+.|++|.+.. +.+.+.. |+..+|.+|-++..--+ ..+.+++.+...++++.+.++. ++
T Consensus 23 ~IgvfDSGvGGltv~---~~i~~~l-------P~~~~iy~~D~~~~PyG------~~s~~~i~~~~~~i~~~ll~~~-g~ 85 (285)
T 2jfn_A 23 TVLVFDSGVGGLSVY---DEIRHLL-------PDLHYIYAFDNVAFPYG------EKSEAFIVERVVAIVTAVQERY-PL 85 (285)
T ss_dssp EEEEEESSSTHHHHH---HHHHHHS-------TTSEEEEEECTTTCCTT------TSCHHHHHHHHHHHHHHHHHHS-CC
T ss_pred cEEEEeCCccHHHHH---HHHHHhC-------CCCCeEEeeccCCCCCc------cCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 466888999986544 3333333 35667777854432211 2478889999999999876643 57
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+.|++.-.-.. ..+...+++...+|++.
T Consensus 86 d~IviaCNTas-~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 86 ALAVVACNTAS-TVSLPALREKFDFPVVG 113 (285)
T ss_dssp SEEEECCHHHH-HHHHHHHHHHCSSCEEC
T ss_pred CEEEEECcccc-HHHHHHHHHhCCCCEEe
Confidence 77776532111 12445666667788873
No 96
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=65.11 E-value=24 Score=25.60 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=42.9
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|..+|+++.|+-.. ...+...+. .++.+.- ..+ ...+++.+.+ .+||+|++-+..-|.
T Consensus 3 M~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~---~~~al~~~~~-------~~~dlvllD~~l~~~-- 61 (230)
T 2oqr_A 3 MATSVLIVEDEESL--------ADPLAFLLRKEGFEATV-VTD---GPAALAEFDR-------AGADIVLLDLMLPGM-- 61 (230)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ECS---HHHHHHHHHH-------HCCSEEEEESSCSSS--
T ss_pred CCCeEEEEeCCHHH--------HHHHHHHHHHCCCEEEE-ECC---HHHHHHHHhc-------cCCCEEEEECCCCCC--
Confidence 66789999988653 123444442 3455442 222 2333433322 458999994433221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+- .++++.+++. |.++||+++..
T Consensus 62 ----------~g-------~~~~~~l~~~-~~~~ii~lt~~ 84 (230)
T 2oqr_A 62 ----------SG-------TDVCKQLRAR-SSVPVIMVTAR 84 (230)
T ss_dssp ----------CH-------HHHHHHHHHH-CSCSEEEEECC
T ss_pred ----------CH-------HHHHHHHHcC-CCCCEEEEeCC
Confidence 11 1345555654 57889988854
No 97
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=64.91 E-value=32 Score=23.79 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=52.5
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccC--CcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYG--GYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~--G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
.+|.++|-|-..+ .+...+.+.+ ..++++.+..-. +.+.. .......... ...++|+++|+.
T Consensus 14 ~~vaVvGas~~~g-----~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~-G~~~~~sl~e--l~~~vDlavi~v------- 78 (140)
T 1iuk_A 14 KTIAVLGAHKDPS-----RPAHYVPRYLREQGYRVLPVNPRFQGEELF-GEEAVASLLD--LKEPVDILDVFR------- 78 (140)
T ss_dssp CEEEEETCCSSTT-----SHHHHHHHHHHHTTCEEEEECGGGTTSEET-TEECBSSGGG--CCSCCSEEEECS-------
T ss_pred CEEEEECCCCCCC-----ChHHHHHHHHHHCCCEEEEeCCCcccCcCC-CEEecCCHHH--CCCCCCEEEEEe-------
Confidence 4799999886652 4555555554 345666553322 33221 1111111111 135789998843
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+++...+- ++.+.+.. ++.+++.+.-.. ......++++++.++
T Consensus 79 ----------p~~~~~~v----~~~~~~~g--i~~i~~~~g~~~--~~~~~~a~~~Gir~v 121 (140)
T 1iuk_A 79 ----------PPSALMDH----LPEVLALR--PGLVWLQSGIRH--PEFEKALKEAGIPVV 121 (140)
T ss_dssp ----------CHHHHTTT----HHHHHHHC--CSCEEECTTCCC--HHHHHHHHHTTCCEE
T ss_pred ----------CHHHHHHH----HHHHHHcC--CCEEEEcCCcCH--HHHHHHHHHcCCEEE
Confidence 33333333 33444442 344555544332 234455677888877
No 98
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=64.79 E-value=27 Score=25.69 Aligned_cols=66 Identities=12% Similarity=-0.035 Sum_probs=41.8
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhC-
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS- 109 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~- 109 (177)
..+++|++.|.+ -......+... ..+||+|.++.-. . .....++++++.+|++.
T Consensus 114 ~~G~~v~~LG~~-vp~~~l~~~~~-------~~~~d~v~lS~~~-~----------------~~~~~~~~~i~~l~~~~~ 168 (210)
T 1y80_A 114 SGGFTVYNLGVD-IEPGKFVEAVK-------KYQPDIVGMSALL-T----------------TTMMNMKSTIDALIAAGL 168 (210)
T ss_dssp HTTCEEEECCSS-BCHHHHHHHHH-------HHCCSEEEEECCS-G----------------GGTHHHHHHHHHHHHTTC
T ss_pred HCCCEEEECCCC-CCHHHHHHHHH-------HcCCCEEEEeccc-c----------------ccHHHHHHHHHHHHhcCC
Confidence 457999998864 22333333222 2578999987532 1 12456888899999875
Q ss_pred -CCCEEEEEcCCC
Q 030474 110 -PIMLVVLITPPP 121 (177)
Q Consensus 110 -p~~~vil~tp~p 121 (177)
|+++|++-++++
T Consensus 169 ~~~~~v~vGG~~~ 181 (210)
T 1y80_A 169 RDRVKVIVGGAPL 181 (210)
T ss_dssp GGGCEEEEESTTC
T ss_pred CCCCeEEEECCCC
Confidence 457777777665
No 99
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=64.75 E-value=31 Score=24.73 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=46.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc--cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~--~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.+|+++.|.-.. ...+...+.. ++.++-...+| ..+++.+.+ .+||+|++-+..-|.
T Consensus 6 ~~ilivdd~~~~--------~~~l~~~L~~~~~~~vv~~~~~~---~~al~~~~~-------~~~dlvllD~~lp~~--- 64 (215)
T 1a04_A 6 ATILLIDDHPML--------RTGVKQLISMAPDITVVGEASNG---EQGIELAES-------LDPDLILLDLNMPGM--- 64 (215)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHTTCTTEEEEEEESSH---HHHHHHHHH-------HCCSEEEEETTSTTS---
T ss_pred eEEEEECCCHHH--------HHHHHHHHhcCCCcEEEEEeCCH---HHHHHHHHh-------cCCCEEEEeCCCCCC---
Confidence 478888887552 2345555533 24443322222 333333322 458999994433221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+- -++++.+++..|.++||+++...-
T Consensus 65 ---------~g-------~~~~~~lr~~~~~~~ii~ls~~~~ 90 (215)
T 1a04_A 65 ---------NG-------LETLDKLREKSLSGRIVVFSVSNH 90 (215)
T ss_dssp ---------CH-------HHHHHHHHHSCCCSEEEEEECCCC
T ss_pred ---------cH-------HHHHHHHHHhCCCCcEEEEECCCC
Confidence 11 246777888888899999986543
No 100
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=64.60 E-value=12 Score=30.13 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|+.--. + ....+.+..| ++++++.+.+..|++.+++++-|
T Consensus 72 ~~aDvVvi~ag~p~kp------G--~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP 124 (326)
T 3pqe_A 72 KDADIVCICAGANQKP------G--ETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124 (326)
T ss_dssp TTCSEEEECCSCCCCT------T--CCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCEEEEecccCCCC------C--ccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence 5689999999874211 1 1233444455 78888889888999988888743
No 101
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=63.69 E-value=28 Score=22.81 Aligned_cols=85 Identities=7% Similarity=-0.038 Sum_probs=47.5
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc--ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~--~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
.++|+++.|+-.. ...+...+. .++.+.- ..+ ...+++.+.+ ..+||+|++ |...
T Consensus 4 ~~~ilivdd~~~~--------~~~l~~~L~~~~~~~v~~-~~~---~~~a~~~l~~------~~~~dlvi~-----D~~l 60 (140)
T 3lua_A 4 DGTVLLIDYFEYE--------REKTKIIFDNIGEYDFIE-VEN---LKKFYSIFKD------LDSITLIIM-----DIAF 60 (140)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHHCCCEEEE-ECS---HHHHHTTTTT------CCCCSEEEE-----CSCS
T ss_pred CCeEEEEeCCHHH--------HHHHHHHHHhccCccEEE-ECC---HHHHHHHHhc------CCCCcEEEE-----eCCC
Confidence 4589999888653 234554443 3566552 222 2333332221 157899999 4432
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p~ 122 (177)
.+ . .+-.++++.+|+ ..|+++||+++...-
T Consensus 61 ~~---------~----~~g~~~~~~l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 61 PV---------E----KEGLEVLSAIRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp SS---------H----HHHHHHHHHHHHSGGGTTCCEEEEESCCC
T ss_pred CC---------C----CcHHHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 10 1 122356677777 778899999986543
No 102
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=63.19 E-value=32 Score=23.20 Aligned_cols=82 Identities=20% Similarity=0.061 Sum_probs=45.2
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
+++|+++.|.-.. ...+.+.+. .++.+.-. . +...+++.+. ..+||+|++-+...|.
T Consensus 7 ~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~al~~l~-------~~~~dlii~D~~l~~~--- 64 (154)
T 3gt7_A 7 AGEILIVEDSPTQ--------AEHLKHILEETGYQTEHV-R---NGREAVRFLS-------LTRPDLIISDVLMPEM--- 64 (154)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEEE-S---SHHHHHHHHT-------TCCCSEEEEESCCSSS---
T ss_pred CCcEEEEeCCHHH--------HHHHHHHHHHCCCEEEEe-C---CHHHHHHHHH-------hCCCCEEEEeCCCCCC---
Confidence 3578998887553 234555553 24544322 1 2233444332 2578999995544331
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p 121 (177)
+- .++++.+|+. .|.++||+++...
T Consensus 65 ---------~g-------~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 65 ---------DG-------YALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp ---------CH-------HHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred ---------CH-------HHHHHHHHhCCCcCCCCEEEEECCC
Confidence 11 2345566654 3678899988654
No 103
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=63.09 E-value=28 Score=22.63 Aligned_cols=82 Identities=15% Similarity=-0.047 Sum_probs=43.3
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccc-ccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~N-D~~~~ 80 (177)
.+|+++.|+-.. ...+...+. .++.+.....+ ...+++.+.+ .+||+|++-+... |.
T Consensus 10 ~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~~~~---~~~a~~~~~~-------~~~dlii~d~~~~~~~--- 68 (140)
T 3cg0_A 10 PGVLIVEDGRLA--------AATLRIQLESLGYDVLGVFDN---GEEAVRCAPD-------LRPDIALVDIMLCGAL--- 68 (140)
T ss_dssp CEEEEECCBHHH--------HHHHHHHHHHHTCEEEEEESS---HHHHHHHHHH-------HCCSEEEEESSCCSSS---
T ss_pred ceEEEEECCHHH--------HHHHHHHHHHCCCeeEEEECC---HHHHHHHHHh-------CCCCEEEEecCCCCCC---
Confidence 478888888653 133444442 24555432222 2333433332 4589999955432 11
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+-. ++++.+++. |.++||+++...-
T Consensus 69 ---------~g~-------~~~~~l~~~-~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 69 ---------DGV-------ETAARLAAG-CNLPIIFITSSQD 93 (140)
T ss_dssp ---------CHH-------HHHHHHHHH-SCCCEEEEECCCC
T ss_pred ---------CHH-------HHHHHHHhC-CCCCEEEEecCCC
Confidence 211 344555555 6788999986543
No 104
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=62.40 E-value=34 Score=23.27 Aligned_cols=104 Identities=10% Similarity=0.050 Sum_probs=53.6
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|.++|-|-..+ .+...+.+.| ..+++|+-..-.+.+. ....-...+. +... +|+++|+.
T Consensus 5 ~siAVVGaS~~~~-----~~g~~v~~~L~~~g~~V~pVnP~~~~i-~G~~~y~sl~--dlp~-vDlavi~~--------- 66 (122)
T 3ff4_A 5 KKTLILGATPETN-----RYAYLAAERLKSHGHEFIPVGRKKGEV-LGKTIINERP--VIEG-VDTVTLYI--------- 66 (122)
T ss_dssp CCEEEETCCSCTT-----SHHHHHHHHHHHHTCCEEEESSSCSEE-TTEECBCSCC--CCTT-CCEEEECS---------
T ss_pred CEEEEEccCCCCC-----CHHHHHHHHHHHCCCeEEEECCCCCcC-CCeeccCChH--HCCC-CCEEEEEe---------
Confidence 4799999998753 4555555554 3345554221112111 1111111211 1236 89998832
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+++... .+++.+.++ +++.+++++-..++ .....++++++..+
T Consensus 67 --------p~~~v~----~~v~e~~~~--g~k~v~~~~G~~~~--e~~~~a~~~Girvv 109 (122)
T 3ff4_A 67 --------NPQNQL----SEYNYILSL--KPKRVIFNPGTENE--ELEEILSENGIEPV 109 (122)
T ss_dssp --------CHHHHG----GGHHHHHHH--CCSEEEECTTCCCH--HHHHHHHHTTCEEE
T ss_pred --------CHHHHH----HHHHHHHhc--CCCEEEECCCCChH--HHHHHHHHcCCeEE
Confidence 444333 444555556 34567777655433 23455677887766
No 105
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=62.01 E-value=36 Score=23.45 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=53.8
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
..+|.++|-|-..| .+...+.+.+ ..++++....-++.+. .......... +...++|+++|+.
T Consensus 14 p~~IavIGaS~~~g-----~~G~~~~~~L~~~G~~V~~vnp~~~~i-~G~~~~~s~~--el~~~vDlvii~v-------- 77 (138)
T 1y81_A 14 FRKIALVGASKNPA-----KYGNIILKDLLSKGFEVLPVNPNYDEI-EGLKCYRSVR--ELPKDVDVIVFVV-------- 77 (138)
T ss_dssp CCEEEEETCCSCTT-----SHHHHHHHHHHHTTCEEEEECTTCSEE-TTEECBSSGG--GSCTTCCEEEECS--------
T ss_pred CCeEEEEeecCCCC-----CHHHHHHHHHHHCCCEEEEeCCCCCeE-CCeeecCCHH--HhCCCCCEEEEEe--------
Confidence 35899999887652 3444555444 3456665543333221 1111111111 1125689998843
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+++...+-+++ +.+. +++.+++.+.-. .......+++.++.+++
T Consensus 78 ---------p~~~v~~v~~~----~~~~--g~~~i~~~~~~~--~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 78 ---------PPKVGLQVAKE----AVEA--GFKKLWFQPGAE--SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp ---------CHHHHHHHHHH----HHHT--TCCEEEECTTSC--CHHHHHHHHHHTCEEEC
T ss_pred ---------CHHHHHHHHHH----HHHc--CCCEEEEcCccH--HHHHHHHHHHCCCEEEc
Confidence 33333333333 4444 344555554433 23334556778888884
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=61.63 E-value=45 Score=26.72 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=45.3
Q ss_pred CC-ceEEEEecccCccccCCCChHHHHHHHHcc--cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccc
Q 030474 1 MR-PQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (177)
Q Consensus 1 ~~-~~I~~~GDSit~gg~~~~~w~~~l~~~l~~--~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~ 77 (177)
|+ .+|+++-|+-.. ...+.+.+.. ++.++....++ ...++.+.+ .+||+|++-+..-+.
T Consensus 1 M~~~rVLIVDD~~~~--------r~~L~~~L~~~~g~~vv~~a~~~---~eAl~~l~~-------~~pDlVllDi~mp~~ 62 (349)
T 1a2o_A 1 MSKIRVLSVDDSALM--------RQIMTEIINSHSDMEMVATAPDP---LVARDLIKK-------FNPDVLTLDVEMPRM 62 (349)
T ss_dssp CCCEEEEEECSCHHH--------HHHHHHHHHTSTTEEEEEEESSH---HHHHHHHHH-------HCCSEEEEECCCSSS
T ss_pred CCCCEEEEEECCHHH--------HHHHHHHHhcCCCcEEEEEeCCH---HHHHHHHhc-------cCCCEEEEECCCCCC
Confidence 55 489999999763 2345555532 34444333333 233333322 458999994433221
Q ss_pred cccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+- .++++.+++..| ++||+++..
T Consensus 63 ------------dG-------lell~~l~~~~p-~pVIvlS~~ 85 (349)
T 1a2o_A 63 ------------DG-------LDFLEKLMRLRP-MPVVMVSSL 85 (349)
T ss_dssp ------------CH-------HHHHHHHHHSSC-CCEEEEECC
T ss_pred ------------CH-------HHHHHHHHhcCC-CcEEEEECC
Confidence 11 135566676666 778888743
No 107
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=61.15 E-value=8.9 Score=28.03 Aligned_cols=68 Identities=6% Similarity=-0.101 Sum_probs=42.1
Q ss_pred eEEEEecccC----ccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSIT----QQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit----~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+..||+++ .+|.-.+.=...|++.+ ..++++...++-.+......+.+.+... ....|+|++.-|+
T Consensus 19 ~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~---~~~~DlVittGG~ 91 (178)
T 2pjk_A 19 YVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS---IDEVDVIISTGGT 91 (178)
T ss_dssp EEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT---CTTCCEEEEESCC
T ss_pred EEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEECCCC
Confidence 4788999887 31111111223355544 3468888888877776666666766553 1248999988775
No 108
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=61.13 E-value=14 Score=29.46 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|.+---. ....+.+..| ++++++.+.+..|++.++++|-|
T Consensus 68 ~~aDvVii~ag~~~kpG--------~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP 120 (314)
T 3nep_X 68 EDSDVCIITAGLPRSPG--------MSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP 120 (314)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS
T ss_pred CCCCEEEECCCCCCCCC--------CCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence 56899999999753211 1244445555 67788888888999988888743
No 109
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=60.90 E-value=29 Score=28.44 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=38.5
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+||+|+++.|. |....+. -+...++.+.|....+.+.+.+++.. +.+++++.
T Consensus 255 ~f~PdlIvvsaG~-Da~~~Dp-Lg~l~lt~~g~~~~~~~l~~~a~~~~-~g~vv~vl 308 (369)
T 1zz1_A 255 AYRPQLIIVGSGF-DASMLDP-LARMMVTADGFRQMARRTIDCAADIC-DGRIVFVQ 308 (369)
T ss_dssp HHCCSEEEEEECC-TTBTTCT-TCCCBBCHHHHHHHHHHHHHHHHHHS-TTCEEEEE
T ss_pred HcCCCEEEEeCCc-cCCCCCC-CCCcccCHHHHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 4689999999997 6554431 23456889999999888888877643 45555554
No 110
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=60.86 E-value=15 Score=29.34 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=33.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|.+--. + ....+.+..| ++++++.+.+..|++.++++|-|
T Consensus 72 ~~aDvVIi~ag~p~k~------G--~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP 124 (321)
T 3p7m_A 72 ENSDVVIVTAGVPRKP------G--MSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNP 124 (321)
T ss_dssp TTCSEEEECCSCCCCT------T--CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEcCCcCCCC------C--CCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 4679999999864311 1 1223334444 77888888888999988888743
No 111
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=60.67 E-value=49 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCCC
Q 030474 100 IMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p 121 (177)
++++.+++ .|.++||+++...
T Consensus 98 ~l~~~lr~-~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 98 DVVQRLRK-NSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHT-TCCCCEEEEESCC
T ss_pred HHHHHHHc-CCCCCEEEEECCC
Confidence 45667776 5788999998654
No 112
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=60.03 E-value=42 Score=24.57 Aligned_cols=83 Identities=17% Similarity=0.084 Sum_probs=44.9
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
|+.+|+++.|.-.. ...+...+. .++.+.-. .++ ..+++.+.+ .+||+|++-+..-|.
T Consensus 4 m~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~-~~~---~~al~~l~~-------~~~dlvilD~~l~~~-- 62 (238)
T 2gwr_A 4 MRQRILVVDDDASL--------AEMLTIVLRGEGFDTAVI-GDG---TQALTAVRE-------LRPDLVLLDLMLPGM-- 62 (238)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-CCG---GGHHHHHHH-------HCCSEEEEESSCSSS--
T ss_pred ccCeEEEEeCCHHH--------HHHHHHHHHHCCCEEEEE-CCH---HHHHHHHHh-------CCCCEEEEeCCCCCC--
Confidence 56789999998653 123444442 34555422 222 333433322 458999995443221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
+- .++++.+++.. .++||+++...-
T Consensus 63 ----------~g-------~~~~~~lr~~~-~~~ii~lt~~~~ 87 (238)
T 2gwr_A 63 ----------NG-------IDVCRVLRADS-GVPIVMLTAKTD 87 (238)
T ss_dssp ----------CH-------HHHHHHHHTTC-CCCEEEEEETTC
T ss_pred ----------CH-------HHHHHHHHhCC-CCcEEEEeCCCC
Confidence 11 13456666654 688888876543
No 113
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=59.97 E-value=15 Score=29.09 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=34.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
...|+|++..|.+--. + ....+.+..| ++++++.+.+..|++.+++++ .|+
T Consensus 68 ~~aDiVViaag~~~kp------G--~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs-NPv 121 (294)
T 1oju_A 68 KGSEIIVVTAGLARKP------G--MTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT-NPM 121 (294)
T ss_dssp TTCSEEEECCCCCCCS------S--CCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS-SSH
T ss_pred CCCCEEEECCCCCCCC------C--CcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC-Ccc
Confidence 4679999999975311 1 1223334444 677888888889999988888 443
No 114
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=59.79 E-value=31 Score=22.61 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=45.3
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccC--cEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKA--DVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~--~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
.+|+++.|+-.. ...+.+.+. .+. .+.-. . +...+++.+.+... ....+||+|++-+..-+.
T Consensus 8 ~~ILivdd~~~~--------~~~l~~~L~~~g~~~~v~~~-~---~~~~a~~~l~~~~~-~~~~~~dlii~D~~l~~~-- 72 (143)
T 2qvg_A 8 VDILYLEDDEVD--------IQSVERVFHKISSLIKIEIA-K---SGNQALDMLYGRNK-ENKIHPKLILLDINIPKM-- 72 (143)
T ss_dssp CSEEEECCCHHH--------HHHHHHHHHHHCTTCCEEEE-S---SHHHHHHHHHTCTT-CCCCCCSEEEEETTCTTS--
T ss_pred CeEEEEeCCHHH--------HHHHHHHHHHhCCCceEEEE-C---CHHHHHHHHHhccc-ccCCCCCEEEEecCCCCC--
Confidence 478999888653 123444442 123 33321 1 22344444433111 012568999995433221
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCCC
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPP 121 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~p 121 (177)
+- .++++.+++.. |.++||+++...
T Consensus 73 ----------~g-------~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 73 ----------NG-------IEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp ----------CH-------HHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred ----------CH-------HHHHHHHHcCccccCCcEEEEeCCC
Confidence 11 24566777654 688999988654
No 115
>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7
Probab=59.76 E-value=37 Score=26.27 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHHHH---cccCcEEEcccCCcchhhHH------H-hhccc---CCCCCCCCCcEEEEEeccccccccCCCCCCccC
Q 030474 23 GAALADAY---CRKADVLLRGYGGYNTRWAL------F-LLHHI---FPLDNSNPPVATTIFFGANDAALFGRTSERQHV 89 (177)
Q Consensus 23 ~~~l~~~l---~~~~~v~N~G~~G~ts~~~l------~-~l~~~---~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~ 89 (177)
...|.+.+ ...+-+++.+.+|....... . .+.+. .. ......-|+..=|-+|.... .
T Consensus 99 g~~L~~~l~~~~vpVglI~~A~GGt~i~~W~~~~~ly~~~i~~~~~al~--~~~~ikGvlWyQGEsn~~~~--------~ 168 (260)
T 2apj_A 99 ANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRK--CGGEIKAVLWYQGESDVLDI--------H 168 (260)
T ss_dssp HHHHHHHHTCTTCCEEEEECCCTTCCGGGGSTTSHHHHHHHHHHHHHGG--GSCEEEEEEEECCGGGSSSH--------H
T ss_pred HHHHHHhhccCCCeEEEEEeCCCCCcHHHHCCCcchHHHHHHHHHHhhc--cCCceEEEEEecCCCCCCCc--------c
Confidence 44555544 22455789999986543211 1 11111 11 01345677777798887531 2
Q ss_pred CHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCC
Q 030474 90 PVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPVD 123 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~p~~ 123 (177)
+.+.|.+.+..||+..|+.. |+.+++++..++..
T Consensus 169 ~~~~Y~~~l~~lI~~wR~~~~~~~lPf~~vql~~~~ 204 (260)
T 2apj_A 169 DAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGG 204 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCCEEEEECSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 47899999999999999974 57889999988774
No 116
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=59.42 E-value=16 Score=24.31 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=27.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
.+||+|++-+...|. +-.++++.+++..|.++||+++...
T Consensus 66 ~~~dlvi~D~~l~~~-------------------~g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 66 DAFDILMIDGAALDT-------------------AELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp TTCSEEEEECTTCCH-------------------HHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCc-------------------cHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 468999994443221 1235667778888899999998654
No 117
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=58.94 E-value=15 Score=29.67 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=34.9
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
....|+|+|..|..--- + +...+.+..| ++++++.+.+..|++.+++++-|
T Consensus 87 ~~daDiVIitaG~p~kp------G--~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP 140 (330)
T 3ldh_A 87 SAGSKLVVITAGARQQE------G--ESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140 (330)
T ss_dssp CSSCSEEEECCSCCCCS------S--CCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred hCCCCEEEEeCCCCCCC------C--CCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence 35689999999975321 1 1233334444 77888889888999988888743
No 118
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=58.92 E-value=17 Score=29.83 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhH
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG 126 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~ 126 (177)
..+||+|+++.|. |....+. -+...++.+.|.. +.+.+++. +.+++++.---.+.+.
T Consensus 289 ~f~PdlIvvsaG~-Da~~~Dp-lg~l~lt~~~~~~----~~~~l~~~--~~~~v~vleGGY~~~~ 345 (362)
T 3men_A 289 RFAPDALVLSLGF-DVYRDDP-QSQVAVTTDGFGR----LGHLIGAL--RLPTVIVQEGGYHIES 345 (362)
T ss_dssp HHCCSEEEEEECS-TTBTTCT-TCCBCBCHHHHHH----HHHHHHTT--CCCEEEEECCCCCHHH
T ss_pred hcCCCEEEEECcc-cCcCCCC-CCCccCCHHHHHH----HHHHHHhh--CCCEEEEECCCCCHHH
Confidence 3689999999998 6554431 2334567777776 55556655 3566666544444443
No 119
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=58.53 E-value=34 Score=22.06 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=45.9
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHcc-cC--cEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KA--DVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~-~~--~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
+++|+++.|+-.. ...+.+.+.. +. .+.-. . +...+++.+.+.-......+||+|++-+...|.
T Consensus 2 ~~~ilivdd~~~~--------~~~l~~~L~~~~~~~~v~~~-~---~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~- 68 (140)
T 1k68_A 2 HKKIFLVEDNKAD--------IRLIQEALANSTVPHEVVTV-R---DGMEAMAYLRQEGEYANASRPDLILLXLNLPKK- 68 (140)
T ss_dssp CCEEEEECCCHHH--------HHHHHHHHHTCSSCCEEEEE-C---SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSS-
T ss_pred CCeEEEEeCCHHH--------HHHHHHHHHhcCCCceEEEE-C---CHHHHHHHHHcccccccCCCCcEEEEecCCCcc-
Confidence 4688888888663 2345555532 33 33221 1 223444444331000001578999994433221
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcCCCC
Q 030474 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPV 122 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp~p~ 122 (177)
+- .++++.+++.. +.++||+++...-
T Consensus 69 -----------~g-------~~~~~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 69 -----------DG-------REVLAEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp -----------CH-------HHHHHHHHHSTTGGGSCEEEEESCCC
T ss_pred -----------cH-------HHHHHHHHcCcccccccEEEEecCCc
Confidence 11 24556666654 5788998886543
No 120
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=57.99 E-value=30 Score=27.14 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=51.8
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|+..|++|.+ .++.+.+..+ +..++.+|-++..-.+ ..+.++..+.+.++++.+.+. ++
T Consensus 26 ~IGvfDsG~Gglt---v~~~i~~~~P-------~~~~iy~~D~~~~pyG------~~s~~~i~~~~~~~~~~L~~~--g~ 87 (290)
T 2vvt_A 26 AIGLIDSGVGGLT---VLKEALKQLP-------NERLIYLGDTARCPYG------PRPAEQVVQFTWEMADFLLKK--RI 87 (290)
T ss_dssp CEEEEESSSTTHH---HHHHHHHHCT-------TSCEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHHTT--TC
T ss_pred cEEEEeCCCcHHH---HHHHHHHHCC-------CccEEEecccccCCCC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 4567778999854 4444555554 2345556644432111 247888899999999998877 57
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+.|++.-.-... .....+++...+|++
T Consensus 88 d~IVIACNTas~-~~l~~lr~~~~iPVi 114 (290)
T 2vvt_A 88 KMLVIACNTATA-VALEEIKAALPIPVV 114 (290)
T ss_dssp SEEEECCHHHHH-HHHHHHHHHCSSCEE
T ss_pred CEEEEeCcchhH-HHHHHHHHhCCCCEE
Confidence 777775321111 123344444556655
No 121
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=57.91 E-value=55 Score=28.01 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=48.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHh--CCCcee
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYV--NSSPYI 140 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~--~~vp~i 140 (177)
++.++=.+.+| |-....+ ..-..++++|.+.+++..+.+|+..|++++|.+++.. ..|.+.+.+. ..+.+|
T Consensus 180 ~P~~vkyweiG-NE~~G~~---q~G~~t~e~Y~~~~~~~a~Aik~~dP~I~lia~G~~~---~~W~~~~l~~~~~~vD~v 252 (504)
T 3ug3_A 180 EPYNVKFWGIG-NEMYGEW---QVGHMTADEYARAAKEYTKWMKVFDPTIKAIAVGCDD---PIWNLRVLQEAGDVIDFI 252 (504)
T ss_dssp SCCCCCEEEEC-SSTTSTT---STTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSC---HHHHHHHHHHHTTTCSEE
T ss_pred CCCCccEEEec-Ccccccc---cccCCCHHHHHHHHHHHHHHHHHhCCCcEEEEECCCC---cchhHHHHHhcccCCCEE
Confidence 44577788888 5543221 0013589999999999999999999999988877544 4576654332 345555
Q ss_pred e
Q 030474 141 N 141 (177)
Q Consensus 141 d 141 (177)
+
T Consensus 253 s 253 (504)
T 3ug3_A 253 S 253 (504)
T ss_dssp E
T ss_pred E
Confidence 3
No 122
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=57.76 E-value=85 Score=28.04 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=50.0
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCC
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 82 (177)
+|+++=|..+......+.=...|...+. .++.|.-. .+| .+++..+.. ..++|+|++-+...|
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a-~~g---~~al~~~~~------~~~~d~vilDi~lp~------ 65 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKS-TSF---DDGFAILSS------NEAIDCLMFSYQMEH------ 65 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEE-SSH---HHHHHHHTT------TCCCSEEEEECCCCS------
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEE-CCH---HHHHHHHhc------CCCCcEEEEeCCCCc------
Confidence 8999999862110000011234555552 35555432 222 333333322 135899999544322
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 83 ~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
.+...+-.++++.+|++.++++|+++|-
T Consensus 66 ---------~~~~~~G~~ll~~iR~~~~~iPIi~lTa 93 (755)
T 2vyc_A 66 ---------PDEHQNVRQLIGKLHERQQNVPVFLLGD 93 (755)
T ss_dssp ---------HHHHHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred ---------ccccccHHHHHHHHHHhCCCCCEEEEec
Confidence 2223344478899999988899999875
No 123
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=57.49 E-value=6.5 Score=28.72 Aligned_cols=66 Identities=12% Similarity=-0.076 Sum_probs=40.2
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHc----ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYC----RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~----~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+.. |.-.+.=...|++.+. .++.+ ..++-++......+.+.+... ..+.|+|+..-|+
T Consensus 9 ~IistGdE~~~-G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~---~~~~DlVittGG~ 78 (178)
T 2pbq_A 9 GVVTISDRASK-GIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELAD---EKGCSLILTTGGT 78 (178)
T ss_dssp EEEEECHHHHH-TSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEeCCcCCC-CCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHh---cCCCCEEEECCCC
Confidence 47888999886 3222211233555332 46777 666767766666666665543 1267999988775
No 124
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=57.20 E-value=17 Score=29.12 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|+.--. + ....+.+. .-++++++.+.+..|++.+++++-|
T Consensus 74 ~~aDiVIiaag~p~k~------G--~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP 126 (324)
T 3gvi_A 74 EGADVVIVTAGVPRKP------G--MSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126 (324)
T ss_dssp TTCSEEEECCSCCCC-------------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEccCcCCCC------C--CCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 5679999999874211 1 11223333 4477888888888999988888743
No 125
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=56.16 E-value=22 Score=28.40 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|+|..|..--- + ....+.+..| ++++++.+.+..|++.+++++-
T Consensus 68 ~~aDivii~ag~~rkp------G--~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 68 EGADVVLISAGVARKP------G--MDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp TTCSEEEECCSCSCCT------T--CCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCCEEEEeCCCCCCC------C--CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4578999988864311 1 1233444444 6777788888899998888763
No 126
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=56.08 E-value=9 Score=26.15 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=43.2
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.||+++=|+-... ..+...+. .++.|+-..-+| ..+++.+++ .+||+|++ |...++
T Consensus 9 ~rILiVdD~~~~~--------~~l~~~L~~~G~~v~~~a~~g---~eAl~~~~~-------~~~Dlvll-----Di~mP~ 65 (123)
T 2lpm_A 9 LRVLVVEDESMIA--------MLIEDTLCELGHEVAATASRM---QEALDIARK-------GQFDIAII-----DVNLDG 65 (123)
T ss_dssp CCEEEESSSTTTS--------HHHHHHHHHHCCCCCBCSCCH---HHHHHHHHH-------CCSSEEEE-----CSSSSS
T ss_pred CEEEEEeCCHHHH--------HHHHHHHHHCCCEEEEEECCH---HHHHHHHHh-------CCCCEEEE-----ecCCCC
Confidence 4789998887642 23444442 245554333333 333443332 57899999 766543
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
.+=- ++++.+|++ +++||++|-.
T Consensus 66 -------~~G~-------el~~~lr~~--~ipvI~lTa~ 88 (123)
T 2lpm_A 66 -------EPSY-------PVADILAER--NVPFIFATGY 88 (123)
T ss_dssp -------CCSH-------HHHHHHHHT--CCSSCCBCTT
T ss_pred -------CCHH-------HHHHHHHcC--CCCEEEEecC
Confidence 1111 234455554 5778888754
No 127
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=55.50 E-value=48 Score=22.86 Aligned_cols=105 Identities=11% Similarity=-0.040 Sum_probs=53.0
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|.++|-|-..+ .+...+.+.+ ..++++.+..-.+... .......... +...++|+++|+
T Consensus 23 ~~iaVVGas~~~g-----~~G~~~~~~l~~~G~~v~~Vnp~~~~i-~G~~~y~sl~--~l~~~vDlvvi~---------- 84 (144)
T 2d59_A 23 KKIALVGASPKPE-----RDANIVMKYLLEHGYDVYPVNPKYEEV-LGRKCYPSVL--DIPDKIEVVDLF---------- 84 (144)
T ss_dssp CEEEEETCCSCTT-----SHHHHHHHHHHHTTCEEEEECTTCSEE-TTEECBSSGG--GCSSCCSEEEEC----------
T ss_pred CEEEEEccCCCCC-----chHHHHHHHHHHCCCEEEEECCCCCeE-CCeeccCCHH--HcCCCCCEEEEE----------
Confidence 4799999886642 3444454444 3456665543332211 1111111111 112568998883
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
++++.. .++++.+.+. +++.+++.+.-. +......++++++.++
T Consensus 85 -------vp~~~~----~~vv~~~~~~--gi~~i~~~~g~~--~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 85 -------VKPKLT----MEYVEQAIKK--GAKVVWFQYNTY--NREASKKADEAGLIIV 128 (144)
T ss_dssp -------SCHHHH----HHHHHHHHHH--TCSEEEECTTCC--CHHHHHHHHHTTCEEE
T ss_pred -------eCHHHH----HHHHHHHHHc--CCCEEEECCCch--HHHHHHHHHHcCCEEE
Confidence 234333 3344445555 355667765433 2334455677888877
No 128
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=55.43 E-value=26 Score=26.96 Aligned_cols=67 Identities=10% Similarity=-0.105 Sum_probs=43.9
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..+++|++.|.. -......+...+ .+||+|.++.-.-- + ...+.++++.+++..+
T Consensus 149 ~~G~~Vi~LG~~-vp~e~l~~~~~~-------~~~d~V~lS~l~~~-------------~----~~~~~~~i~~l~~~~~ 203 (258)
T 2i2x_B 149 ANGYNVVDLGRD-VPAEEVLAAVQK-------EKPIMLTGTALMTT-------------T----MYAFKEVNDMLLENGI 203 (258)
T ss_dssp HTTCEEEEEEEE-CCSHHHHHHHHH-------HCCSEEEEECCCTT-------------T----TTHHHHHHHHHHTTTC
T ss_pred HCCCEEEECCCC-CCHHHHHHHHHH-------cCCCEEEEEeeccC-------------C----HHHHHHHHHHHHhcCC
Confidence 468999999875 233333332222 57899998764211 1 2367888999999888
Q ss_pred CCEEEEEcCCCC
Q 030474 111 IMLVVLITPPPV 122 (177)
Q Consensus 111 ~~~vil~tp~p~ 122 (177)
+++|++-++++.
T Consensus 204 ~~~v~vGG~~~~ 215 (258)
T 2i2x_B 204 KIPFACGGGAVN 215 (258)
T ss_dssp CCCEEEESTTCC
T ss_pred CCcEEEECccCC
Confidence 887777776654
No 129
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=55.43 E-value=22 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
....|+|++..|+.--- + +...+.+.. -++++++.+.+..|++.+++++-|
T Consensus 76 ~~~aDvVIiaag~p~kp------g--~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP 129 (315)
T 3tl2_A 76 TADSDVVVITAGIARKP------G--MSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP 129 (315)
T ss_dssp GTTCSEEEECCSCCCCT------T--CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred hCCCCEEEEeCCCCCCC------C--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh
Confidence 35689999999975321 1 123334444 467888888888999988888743
No 130
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=55.39 E-value=12 Score=26.94 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=41.1
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cc-----cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CR-----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~-----~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+..||.+.. |.-.+.=...+++.+ .. ++++...++-++......+.+++... ..+.|+|+..-|+
T Consensus 9 ~IistGde~~~-G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVittGG~ 81 (167)
T 1uuy_A 9 AILTVSDTVSA-GAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSD---VDEMDLILTLGGT 81 (167)
T ss_dssp EEEEECHHHHT-TSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEECCcccC-CCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEECCCC
Confidence 47889999865 332221122344444 22 57777778777776666666666542 1367999988776
No 131
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=55.05 E-value=54 Score=23.27 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH----cccCcEEEcccCCcchh
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY----CRKADVLLRGYGGYNTR 47 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l----~~~~~v~N~G~~G~ts~ 47 (177)
|+..|+.+|..+-. ..|...++.+.+ ..++.+++.|..|..-.
T Consensus 4 M~~lVlGiGN~l~g----DDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l~ 50 (159)
T 2e85_A 4 VTDVLLCVGNSMMG----DDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDI 50 (159)
T ss_dssp CCEEEEEECCGGGG----GGGHHHHHHHHHHHSCCTTCEEEECTTCSGGGH
T ss_pred CCEEEEEECCcccc----cccHHHHHHHHHhhhCCCCeEEEECCCCHHHHH
Confidence 66678888888762 224444455544 24577888888775443
No 132
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=55.03 E-value=37 Score=26.50 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=54.2
Q ss_pred ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCC
Q 030474 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (177)
Q Consensus 32 ~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~ 111 (177)
..+-|++.|++|.+. ++.+.+..+ +..++.+|-++..-.+ ..+.++..+.+.++++.+.+. +
T Consensus 23 ~~IGvfDsG~Ggltv---~~~i~~~~P-------~~~~iy~~D~~~~Pyg------~~s~~~i~~~~~~~~~~L~~~--g 84 (286)
T 2jfq_A 23 KPIGVIDSGVGGLTV---AKEIMRQLP-------NETIYYLGDIGRCPYG------PRPGEQVKQYTVEIARKLMEF--D 84 (286)
T ss_dssp SCEEEEESSSTTHHH---HHHHHHHCT-------TCCEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHTTS--C
T ss_pred CcEEEEeCCCCcHHH---HHHHHHHCC-------CccEEEeccCCCCCcC------CCCHHHHHHHHHHHHHHHHHC--C
Confidence 356788899997654 344444443 3446677755432211 247888999999999999876 5
Q ss_pred CEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 112 MLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 112 ~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
++.|++.-.-. ...+...+++...+|++
T Consensus 85 ~d~IVIaCNTa-s~~~l~~lr~~~~iPVi 112 (286)
T 2jfq_A 85 IKMLVIACNTA-TAVALEYLQKTLSISVI 112 (286)
T ss_dssp CSEEEECCHHH-HHHHHHHHHHHCSSEEE
T ss_pred CCEEEEeCCch-hHHHHHHHHHhCCCCEE
Confidence 77777753211 11234445555666766
No 133
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=55.03 E-value=11 Score=28.15 Aligned_cols=67 Identities=10% Similarity=-0.119 Sum_probs=35.2
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHc-ccCc--EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKAD--VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~--v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+.. |.-.+.=...|++.+. .+.. +...++-++.-....+.+.+... ..+.|+|+..-|+
T Consensus 7 ~IIttGdEl~~-G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~---~~~~DlVitTGGt 76 (195)
T 1di6_A 7 GLVSISDRASS-GVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVD---EMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEECC--------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHH---TSCCSEEEEESCC
T ss_pred EEEEECCCCCC-CeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEECCCC
Confidence 47888999986 3222222234555442 2444 45556656655555555555443 1367999988876
No 134
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=53.65 E-value=43 Score=21.77 Aligned_cols=82 Identities=10% Similarity=-0.002 Sum_probs=44.3
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
+++|+++.|+-.. ...+...+. .++.+... . +...+++.+.+. .+||+|++-+...|.
T Consensus 15 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~al~~l~~~------~~~dlvilD~~l~~~--- 73 (138)
T 2b4a_A 15 PFRVTLVEDEPSH--------ATLIQYHLNQLGAEVTVH-P---SGSAFFQHRSQL------STCDLLIVSDQLVDL--- 73 (138)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-S---SHHHHHHTGGGG------GSCSEEEEETTCTTS---
T ss_pred CCeEEEECCCHHH--------HHHHHHHHHHcCCEEEEe-C---CHHHHHHHHHhC------CCCCEEEEeCCCCCC---
Confidence 3578888887553 234444442 24544321 1 223334333220 358999994433221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc-CC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT-PP 120 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t-p~ 120 (177)
+- .++++.+++..|.++||+++ ..
T Consensus 74 ---------~g-------~~~~~~l~~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 74 ---------SI-------FSLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp ---------CH-------HHHHHHHTTSSSCCEEEEEESCC
T ss_pred ---------CH-------HHHHHHHHhhCCCCCEEEEECCC
Confidence 11 24667777777889999998 54
No 135
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=53.52 E-value=43 Score=25.45 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=42.4
Q ss_pred CcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCE
Q 030474 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (177)
Q Consensus 34 ~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~ 113 (177)
+-|...|++|.+.. +.+.+.. |+..++.+|-++..-.+ ..+.++..+.+.++++.+.+. +++
T Consensus 3 IgvfDSG~Ggltv~---~~l~~~~-------P~~~~iy~~D~~~~pyG------~~s~~~i~~~~~~~~~~L~~~--g~d 64 (254)
T 1b73_A 3 IGIFDSGVGGLTVL---KAIRNRY-------RKVDIVYLGDTARVPYG------IRSKDTIIRYSLECAGFLKDK--GVD 64 (254)
T ss_dssp EEEEESSSGGGTHH---HHHHHHS-------TTCEEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHHTT--TCS
T ss_pred EEEEECCccHHHHH---HHHHHhC-------CCCcEEEeecCCCCCCC------cCCHHHHHHHHHHHHHHHHHC--CCC
Confidence 34567888887643 3333433 35667777755533211 246788888888888888876 566
Q ss_pred EEEEc
Q 030474 114 VVLIT 118 (177)
Q Consensus 114 vil~t 118 (177)
.|++.
T Consensus 65 ~ivia 69 (254)
T 1b73_A 65 IIVVA 69 (254)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66664
No 136
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=53.19 E-value=21 Score=22.67 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++.|+-.. ...+...+. .++.+.-. . +...+++.+. ..+||+|++-+...+.
T Consensus 4 ~~ilivdd~~~~--------~~~l~~~l~~~~~~v~~~-~---~~~~~~~~~~-------~~~~dlvi~d~~~~~~---- 60 (124)
T 1dc7_A 4 GIVWVVDDDSSI--------RWVLERALAGAGLTCTTF-E---NGNEVLAALA-------SKTPDVLLSDIRMPGM---- 60 (124)
T ss_dssp CCCEEECSSSSH--------HHHHHHHHTTTTCCCEEC-C---CTTHHHHHSS-------SCCCSCEEECSCSSHH----
T ss_pred cEEEEEeCCHHH--------HHHHHHHHHhCCcEEEEe-C---CHHHHHHHHh-------cCCCCEEEEeeecCCC----
Confidence 478888887653 234555553 23443321 1 1233333322 2568999983332111
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+-.++++.+++..|.+++|+++...
T Consensus 61 ---------------~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1dc7_A 61 ---------------DGLALLKQIKQRHPMLPVIIMTAHS 85 (124)
T ss_dssp ---------------HHCSTHHHHHHHCTTSCCCCBCCST
T ss_pred ---------------CHHHHHHHHHhhCCCCCEEEEecCC
Confidence 1123456667777788888887543
No 137
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=53.10 E-value=77 Score=24.68 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=44.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-HHHHHHHHhCCCcee
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED-GRMEYAKYVNSSPYI 140 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-~~~~~~a~~~~vp~i 140 (177)
.+.|+-+-.+|+- ....+++..+-...+++.+++-.|+ -+|+++|.|..+- ...+..-.+.++|.|
T Consensus 29 dRedI~vrv~gsG-----------aKm~pe~~~~~~~~~~~~~~~~~pD-fvI~isPN~a~PGP~~ARE~l~~~~iP~I 95 (283)
T 1qv9_A 29 DREDVEFRVVGTS-----------VKMDPECVEAAVEMALDIAEDFEPD-FIVYGGPNPAAPGPSKAREMLADSEYPAV 95 (283)
T ss_dssp CCSSEEEEEEECT-----------TCCSHHHHHHHHHHHHHHHHHHCCS-EEEEECSCTTSHHHHHHHHHHHTSSSCEE
T ss_pred ccCCceEEEeccC-----------CCCCHHHHHHHHHHhhhhhhhcCCC-EEEEECCCCCCCCchHHHHHHHhCCCCEE
Confidence 4567777666641 1257888888888888888888764 3777888887653 333344445677776
No 138
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=52.84 E-value=35 Score=27.35 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=43.5
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++-|+-.. ...+...+. .++.|. ...+| ..+++.+.+ .+||+|++ |...++
T Consensus 6 ~~iLivdD~~~~--------~~~l~~~L~~~g~~v~-~a~~~---~~al~~~~~-------~~~dlvll-----D~~mp~ 61 (394)
T 3eq2_A 6 ATLLIIDDDEVV--------RESLAAYLEDSNFKVL-QALNG---LQGLQIFES-------EQPDLVIC-----DLRMPQ 61 (394)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHHHTTEEEE-ECSSH---HHHHHHHHH-------SCCSEEEE-----CCCSSS
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHhCCCEEE-EECCH---HHHHHHHhh-------CCCCEEEE-----cCCCCC
Confidence 588999888653 133444442 345553 22233 344444432 56899999 554431
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
.+- -++++.+|+..|+++||++|.
T Consensus 62 -------~~G-------~~~~~~lr~~~~~~pii~lt~ 85 (394)
T 3eq2_A 62 -------IDG-------LELIRRIRQTASETPIIVLSG 85 (394)
T ss_dssp -------SCT-------HHHHHHHHHTTCCCCEEEC--
T ss_pred -------CCH-------HHHHHHHHhhCCCCcEEEEEc
Confidence 111 245566777777888988873
No 139
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=52.70 E-value=52 Score=22.41 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCC
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
++++.+++..| .+||+++...-
T Consensus 88 ~l~~~lr~~~~-~~ii~~s~~~~ 109 (164)
T 3t8y_A 88 EALKLIMKKAP-TRVIMVSSLTE 109 (164)
T ss_dssp HHHHHHHHHSC-CEEEEEESSCC
T ss_pred HHHHHHHhcCC-ceEEEEecCCc
Confidence 45677777777 78888876543
No 140
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=52.63 E-value=7.2 Score=31.84 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=30.7
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+||+|+++.|. |....+. -+....+.+.|.. +.+.+++. +.+++++.
T Consensus 271 ~f~Pd~ivvsaG~-D~~~~Dp-lg~~~lt~~~~~~----~~~~l~~~--~~~~v~vl 319 (341)
T 3q9b_A 271 AFGAEAIVVSLGV-DTFEQDP-ISFFKLTSPDYIT----MGRTIAAS--GVPLLVVM 319 (341)
T ss_dssp HHTCSCEEEEECC-TTBTTCT-TCCCBBCTTHHHH----HHHHHHTT--SSCEEEEE
T ss_pred hhCCCEEEEeCCc-cccCCCC-CCCccCCHHHHHH----HHHHHHHh--CCCEEEEE
Confidence 3689999999998 6654431 1334567777766 45555555 34555543
No 141
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=52.21 E-value=61 Score=24.95 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=51.8
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|+..|++|.+ .++.+.+..+ +..++.+| |..+.. .+ ..+.++..+.+.++++.+.+. ++
T Consensus 14 ~IGv~DsG~Gglt---v~~~i~~~~P-------~~~~iy~~--D~~~~P--yg--~~s~~~i~~~~~~~~~~L~~~--g~ 75 (273)
T 2oho_A 14 PIGFLDSGVGGLT---VVCELIRQLP-------HEKIVYIG--DSARAP--YG--PRPKKQIKEYTWELVNFLLTQ--NV 75 (273)
T ss_dssp CEEEEESSSTTHH---HHHHHHHHCT-------TCCEEEEE--CGGGCC--CT--TSCHHHHHHHHHHHHHHHHTT--TC
T ss_pred cEEEEeCCCcHHH---HHHHHHHHCC-------CCCEEEEe--CCCCCC--CC--CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 3556778999844 4445545544 23366667 443321 01 246788899999999998876 57
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
+.|++.-.-.. ..+...+++...+|++
T Consensus 76 d~iviaCNTas-~~~l~~lr~~~~iPvi 102 (273)
T 2oho_A 76 KMIVFACNTAT-AVAWEEVKAALDIPVL 102 (273)
T ss_dssp SEEEECCHHHH-HHHHHHHHHHCSSCEE
T ss_pred CEEEEeCchHh-HHHHHHHHHhCCCCEE
Confidence 77777532111 1223445555666666
No 142
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=52.15 E-value=18 Score=28.46 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=34.6
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~ 117 (177)
-|.+-.|++|.||....-+..+ .....++..-+++++..+++. +..+.++
T Consensus 188 ~~~vD~l~iG~~DLs~~lg~~~--~~~~p~v~~a~~~iv~aaraa--G~~~gv~ 237 (287)
T 2v5j_A 188 VEGVDGVFIGPADLSADMGYAG--NPQHPEVQAAIEQAIVQIRES--GKAPGIL 237 (287)
T ss_dssp STTEEEEEECHHHHHHHTTSTT--CCCSHHHHHHHHHHHHHHHHT--TSEEEEE
T ss_pred cCCCCEEEECHHHHHHHhCCCC--CCCCHHHHHHHHHHHHHHHHc--CCeeEEe
Confidence 3568889999999986532111 123456888999999999988 4555444
No 143
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=51.62 E-value=61 Score=22.90 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=42.9
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..+++|++.|..= +...+.+... ..+||+|.++.=. . .....+.++++.+++..+
T Consensus 44 ~~G~eVi~lG~~~-p~e~lv~aa~-------~~~~diV~lS~~~-~----------------~~~~~~~~~i~~L~~~g~ 98 (161)
T 2yxb_A 44 DAGFEVVYTGLRQ-TPEQVAMAAV-------QEDVDVIGVSILN-G----------------AHLHLMKRLMAKLRELGA 98 (161)
T ss_dssp HTTCEEECCCSBC-CHHHHHHHHH-------HTTCSEEEEEESS-S----------------CHHHHHHHHHHHHHHTTC
T ss_pred HCCCEEEECCCCC-CHHHHHHHHH-------hcCCCEEEEEeec-h----------------hhHHHHHHHHHHHHhcCC
Confidence 4589999988762 2233332222 2678999886431 1 246788889999998753
Q ss_pred -CCEEEEEcCCC
Q 030474 111 -IMLVVLITPPP 121 (177)
Q Consensus 111 -~~~vil~tp~p 121 (177)
+++|++-++++
T Consensus 99 ~~i~v~vGG~~~ 110 (161)
T 2yxb_A 99 DDIPVVLGGTIP 110 (161)
T ss_dssp TTSCEEEEECCC
T ss_pred CCCEEEEeCCCc
Confidence 67888877654
No 144
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=51.24 E-value=31 Score=27.43 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
...|+|+++.|....... ...+-+. .-++++++.+++..|++.|++.| .|++-
T Consensus 75 ~gaDvVi~~ag~~~~~g~--------~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S-NPv~~ 130 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPGM--------TRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS-NPVNS 130 (326)
T ss_dssp TTCSEEEECCCCCCCSSC--------CCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC-SSHHH
T ss_pred CCCCEEEEcCCcCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC-CchHH
Confidence 457999999997543211 1222233 45778888888888888777765 45443
No 145
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=51.07 E-value=35 Score=27.13 Aligned_cols=48 Identities=2% Similarity=0.029 Sum_probs=32.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH-HH---HHHHHHHHHHHhC-CCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY-GD---NLKIMVQHLKRLS-PIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~-~~---nl~~ii~~~r~~~-p~~~vil~tp 119 (177)
...|+|++..|.+--. ..+..++ .. -++++++.+++.. |++++|++|-
T Consensus 82 ~~aD~Vi~~ag~~~~~---------g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 82 KDADVALLVGARPRGP---------GMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp TTCSEEEECCCCCCCT---------TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEEeCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 4679999999975421 1233333 33 3777888888885 8999999884
No 146
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=50.93 E-value=38 Score=26.75 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++..|..--. + +...+....| ++++++.+.+..|++.+|++|-
T Consensus 66 ~~aD~Vi~~ag~~~k~------G--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 66 RGSDIVLVTAGIGRKP------G--MTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp TTCSEEEECCSCCCCS------S--CCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEeCCCCCCC------C--CcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5689999998873211 1 1233444555 7777888888889998888764
No 147
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=50.10 E-value=18 Score=29.15 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|..--- + +...+.+..| ++++++.+.+..|++.++++|-|
T Consensus 75 ~~aDiVvi~ag~~~kp------G--~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP 127 (326)
T 3vku_A 75 KDADLVVITAGAPQKP------G--ETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp TTCSEEEECCCCC------------------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred cCCCEEEECCCCCCCC------C--chHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence 5679999998864211 1 1223334444 68888888888999988888743
No 148
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=50.02 E-value=38 Score=26.80 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=33.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccC-CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHV-PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~-~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
...|+|++..|..-.. +..+. -...-..-++++++.+++..|++.+|++|- |++
T Consensus 67 ~~aDvVvi~ag~~~~~------g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN-Pv~ 121 (314)
T 1mld_A 67 KGCDVVVIPAGVPRKP------GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN-PVN 121 (314)
T ss_dssp TTCSEEEECCSCCCCT------TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS-CHH
T ss_pred CCCCEEEECCCcCCCC------CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC-Ccc
Confidence 4679999998874211 11111 123334557777888888889998888753 443
No 149
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=46.99 E-value=65 Score=21.91 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=45.3
Q ss_pred eEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCC
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 82 (177)
||+++=|+-+. ...+...+. .++.++-.+-+|.. +++.+.+ .+||+|++ |...++
T Consensus 14 rILiVDD~~~~--------r~~l~~~L~~~G~~~v~~a~~g~~---al~~~~~-------~~~Dlill-----D~~MP~- 69 (134)
T 3to5_A 14 KILIVDDFSTM--------RRIVKNLLRDLGFNNTQEADDGLT---ALPMLKK-------GDFDFVVT-----DWNMPG- 69 (134)
T ss_dssp CEEEECSCHHH--------HHHHHHHHHHTTCCCEEEESSHHH---HHHHHHH-------HCCSEEEE-----ESCCSS-
T ss_pred EEEEEeCCHHH--------HHHHHHHHHHcCCcEEEEECCHHH---HHHHHHh-------CCCCEEEE-----cCCCCC-
Confidence 78998888764 134555552 34543333444432 2333322 56899999 666542
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHH--hCCCCEEEEEcCCCC
Q 030474 83 TSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPPV 122 (177)
Q Consensus 83 ~~~~~~~~~~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p~ 122 (177)
.+=- ++++++|+ ..++++||++|....
T Consensus 70 ------mdG~-------el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 70 ------MQGI-------DLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp ------SCHH-------HHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred ------CCHH-------HHHHHHHhCCCCCCCeEEEEECCCC
Confidence 1212 34455554 346788999986543
No 150
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=46.94 E-value=18 Score=26.04 Aligned_cols=65 Identities=14% Similarity=0.003 Sum_probs=40.4
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
-|+.+||.+-+ -.+.. ...|++.+ ..++++...++-++......+.+.+... ..+.|+|++.-|+
T Consensus 14 ~Ii~tGdE~g~-i~D~n--~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~---~~~~DlVittGG~ 79 (172)
T 1mkz_A 14 AILTVSNRRGE-EDDTS--GHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIA---SDDVQVVLITGGT 79 (172)
T ss_dssp EEEEECSSCCG-GGCHH--HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH---SSSCCEEEEESCC
T ss_pred EEEEEeCCCCc-ccCcc--HHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEeCCCC
Confidence 47888999422 12221 22355554 3467888878777776666666666543 1257999888775
No 151
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=45.72 E-value=48 Score=25.65 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=43.1
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|...|++|.|... .+.+..+ +.-++.+|-++..-.+ ..+.++..+.+.++++.+.+. ++
T Consensus 9 ~IgvfDSGvGGltv~~---~i~~~lP-------~~~~iy~~D~~~~PyG------~~s~~~i~~~~~~~~~~L~~~--g~ 70 (276)
T 2dwu_A 9 VIGVLDSGVGGLTVAS---EIIRQLP-------KESICYIGDNERCPYG------PRSVEEVQSFVFEMVEFLKQF--PL 70 (276)
T ss_dssp EEEEEESSSTTHHHHH---HHHHHCT-------TSCEEEEECGGGCCCT------TSCHHHHHHHHHHHHHHHTTS--CE
T ss_pred eEEEEeCCcchHHHHH---HHHHhCC-------CCcEEEccCCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 3567788999976543 3333333 2225557754433211 246888888888888888876 67
Q ss_pred EEEEEcC
Q 030474 113 LVVLITP 119 (177)
Q Consensus 113 ~vil~tp 119 (177)
+.|++.-
T Consensus 71 d~IViAC 77 (276)
T 2dwu_A 71 KALVVAC 77 (276)
T ss_dssp EEEEECC
T ss_pred CEEEEeC
Confidence 8777753
No 152
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=45.52 E-value=25 Score=23.50 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCC
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
++++.+++..|.++||+++...-
T Consensus 67 ~~~~~l~~~~~~~~ii~ls~~~~ 89 (154)
T 2qsj_A 67 DGLVRLKRFDPSNAVALISGETD 89 (154)
T ss_dssp HHHHHHHHHCTTSEEEEC-----
T ss_pred HHHHHHHHhCCCCeEEEEeCCCC
Confidence 45677777788899999886543
No 153
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=45.51 E-value=55 Score=21.25 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=46.0
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc-cCc-EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~-~~~-v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
++|+++.|+-.. ...+...+.. +.. .+....+ ...+++.+.+... ...+||+|++-+...|.
T Consensus 10 ~~iLivdd~~~~--------~~~l~~~l~~~~~~~~v~~~~~---~~~a~~~l~~~~~--~~~~~dlvi~D~~l~~~--- 73 (146)
T 3ilh_A 10 DSVLLIDDDDIV--------NFLNTTIIRMTHRVEEIQSVTS---GNAAINKLNELYA--AGRWPSIICIDINMPGI--- 73 (146)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHHTTCCEEEEEEESS---HHHHHHHHHHHHT--SSCCCSEEEEESSCSSS---
T ss_pred ceEEEEeCCHHH--------HHHHHHHHHhcCCCeeeeecCC---HHHHHHHHHHhhc--cCCCCCEEEEcCCCCCC---
Confidence 378888887542 2345555532 221 1222222 2344444433211 12578999995544332
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHH----hCCCCEEEEEcCCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKR----LSPIMLVVLITPPPV 122 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~----~~p~~~vil~tp~p~ 122 (177)
+- .++++.+++ ..+..+||+++...-
T Consensus 74 ---------~g-------~~~~~~l~~~~~~~~~~~~ii~~t~~~~ 103 (146)
T 3ilh_A 74 ---------NG-------WELIDLFKQHFQPMKNKSIVCLLSSSLD 103 (146)
T ss_dssp ---------CH-------HHHHHHHHHHCGGGTTTCEEEEECSSCC
T ss_pred ---------CH-------HHHHHHHHHhhhhccCCCeEEEEeCCCC
Confidence 11 245566666 567888999886543
No 154
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=45.32 E-value=46 Score=28.00 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=49.4
Q ss_pred CCCcEEEEEecc-ccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC--ChhHHHHHHHHhCCCce
Q 030474 63 NPPVATTIFFGA-NDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV--DEDGRMEYAKYVNSSPY 139 (177)
Q Consensus 63 ~~pd~Vvi~~G~-ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~--~~~~~~~~~a~~~~vp~ 139 (177)
...|+++|++|| -|... ..+..-.....+.+.+.++...+..-||+-+..|. .++.....+++..+ -
T Consensus 96 ~~ad~~~I~VpTP~~~d~--------~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~--~ 165 (444)
T 3vtf_A 96 AATDATFIAVGTPPAPDG--------SADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAG--G 165 (444)
T ss_dssp HTSSEEEECCCCCBCTTS--------SBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTT--T
T ss_pred hcCCceEEEecCCCCCCC--------CCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCC--C
Confidence 356999999997 22111 13566677778888888887654455555454333 33333333333222 2
Q ss_pred eecccCCCCCCCCCCCccceeecc
Q 030474 140 INCFLGRPPKYPQPIGKQQLFYHG 163 (177)
Q Consensus 140 id~~l~~~~~~l~~dG~~~~~~~~ 163 (177)
++..+..+|+++.+.-.-..+.+|
T Consensus 166 ~~f~v~~~PErl~eG~a~~d~~~~ 189 (444)
T 3vtf_A 166 VKFSVASNPEFLREGSALEDFFKP 189 (444)
T ss_dssp CCCEEEECCCCCCTTSHHHHHHSC
T ss_pred CCceeecCcccccCCccccccccC
Confidence 333345567777664433444443
No 155
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=45.22 E-value=41 Score=26.68 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=32.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|..--... . +..-...-..-++++++.+++..|++.++++|-|
T Consensus 71 ~~aDvVii~ag~~~~~g~----~-R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 123 (318)
T 1ez4_A 71 KDADLVVITAGAPQKPGE----S-RLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP 123 (318)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCEEEECCCCCCCCCC----C-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 468999999997421110 0 0112233345577788888888999998887643
No 156
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=44.78 E-value=63 Score=21.06 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=42.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+. .++.+.- ..+ ...+++.+.+ .+||+|++-+..-|.
T Consensus 5 ~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~---~~~al~~~~~-------~~~dlvl~D~~lp~~---- 61 (136)
T 3t6k_A 5 HTLLIVDDDDTV--------AEMLELVLRGAGYEVRR-AAS---GEEALQQIYK-------NLPDALICDVLLPGI---- 61 (136)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHHH-------SCCSEEEEESCCSSS----
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHHCCCEEEE-eCC---HHHHHHHHHh-------CCCCEEEEeCCCCCC----
Confidence 488999888653 233444442 3455542 222 2333443322 568999994433221
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p 121 (177)
+- -++++.+|+. .+.++||+++...
T Consensus 62 --------~g-------~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 62 --------DG-------YTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp --------CH-------HHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred --------CH-------HHHHHHHHcCCCcCCccEEEEecCC
Confidence 11 2344555543 4567888888654
No 157
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=44.11 E-value=82 Score=24.52 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=44.5
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~ 112 (177)
.+-|...|+||.|....+. +.++ +.=++.+| |..+.. .| .-+.++..+.+.++++.+.+. ++
T Consensus 26 ~IgvfDSGvGGLtv~~~i~---~~lP-------~e~~iy~~--D~a~~P--YG--~ks~e~i~~~~~~~~~~L~~~--g~ 87 (274)
T 3uhf_A 26 KIGVFDSGVGGLSVLKSLY---EARL-------FDEIIYYG--DTARVP--YG--VKDKDTIIKFCLEALDFFEQF--QI 87 (274)
T ss_dssp EEEEEESSSTTHHHHHHHH---HTTC-------CSEEEEEE--CTTTCC--CT--TSCHHHHHHHHHHHHHHHTTS--CC
T ss_pred eEEEEECCCChHHHHHHHH---HHCC-------CCCEEEEe--cCCCCC--CC--CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 4667889999988765443 3333 33345666 333321 11 248899999999999999877 57
Q ss_pred EEEEEc
Q 030474 113 LVVLIT 118 (177)
Q Consensus 113 ~vil~t 118 (177)
+.|++.
T Consensus 88 d~IVIA 93 (274)
T 3uhf_A 88 DMLIIA 93 (274)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 777764
No 158
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=43.90 E-value=58 Score=22.67 Aligned_cols=64 Identities=9% Similarity=-0.091 Sum_probs=36.9
Q ss_pred cEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCce
Q 030474 66 VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPY 139 (177)
Q Consensus 66 d~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~ 139 (177)
.+++|.+....|... =......++++.+.+++...+..||.++.-|.+.....+..+++.++++
T Consensus 29 k~vll~F~~t~C~~~----------C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~ 92 (170)
T 3me7_A 29 KPIILSPIYTHCRAA----------CPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDG 92 (170)
T ss_dssp SCEEEEEECTTCCSH----------HHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCS
T ss_pred CEEEEEEECCCCCch----------hHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 467777766655311 1223456777777776544468899999877443444444455555433
No 159
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=43.88 E-value=32 Score=27.19 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=32.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|..--. + ....+.. ..-++++++.+++..|++.++++|-|
T Consensus 66 ~~aD~Vii~ag~~~~~------g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 118 (310)
T 2xxj_A 66 EGARAVVLAAGVAQRP------G--ETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNP 118 (310)
T ss_dssp TTEEEEEECCCCCCCT------T--CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEECCCCCCCC------C--cCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 4679999999874211 1 1112223 34477788888888999998887643
No 160
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=43.57 E-value=23 Score=28.70 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCE-EEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIML-VVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~-vil~tp 119 (177)
...|+|++..|+.--. + ....+.+..| ++++++.+.+..|++. ++++|-
T Consensus 75 ~dADvVvitaG~p~kp------G--~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 75 TDAKYIVSSGGAPRKE------G--MTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp TTEEEEEECCC---------------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CCCCEEEEccCCCCCC------C--CCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 4579999998864211 1 1223334555 7888889999999996 666663
No 161
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=43.55 E-value=78 Score=21.80 Aligned_cols=105 Identities=9% Similarity=-0.062 Sum_probs=51.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEE--EcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVL--LRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~--N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~ 79 (177)
.+|.++|-|-..+ .+...+.+.+ ..+++|. |....|.... ......... +....+|+++|+.-
T Consensus 14 ~~IavIGas~~~g-----~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~-G~~~~~sl~--el~~~~Dlvii~vp------ 79 (145)
T 2duw_A 14 RTIALVGASDKPD-----RPSYRVMKYLLDQGYHVIPVSPKVAGKTLL-GQQGYATLA--DVPEKVDMVDVFRN------ 79 (145)
T ss_dssp CCEEEESCCSCTT-----SHHHHHHHHHHHHTCCEEEECSSSTTSEET-TEECCSSTT--TCSSCCSEEECCSC------
T ss_pred CEEEEECcCCCCC-----ChHHHHHHHHHHCCCEEEEeCCcccccccC-CeeccCCHH--HcCCCCCEEEEEeC------
Confidence 4799999887642 3544555444 3345554 4433223221 111111111 12357899988543
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+...+-+++ +.+. +++-+++.+.-. .......+++.++.++
T Consensus 80 -----------~~~v~~v~~~----~~~~--g~~~i~i~~~~~--~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 80 -----------SEAAWGVAQE----AIAI--GAKTLWLQLGVI--NEQAAVLAREAGLSVV 121 (145)
T ss_dssp -----------STHHHHHHHH----HHHH--TCCEEECCTTCC--CHHHHHHHHTTTCEEE
T ss_pred -----------HHHHHHHHHH----HHHc--CCCEEEEcCChH--HHHHHHHHHHcCCEEE
Confidence 2222333333 3334 344566554333 3334555778888888
No 162
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=43.49 E-value=33 Score=23.29 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
..+.+-|+|-...+|... ..+++.|...|++.|+.-|+. +.+-|++..|...
T Consensus 29 ~DrygGV~Vd~~~l~~~~--------~~d~~~F~~~L~~SL~~Wr~~--gk~~IWlklpi~~ 80 (113)
T 3fxt_A 29 LDRFGGISVRLARLDALD--------RLDAAAFQKGLQAAVQQWRSE--GRTAVWLHIPILQ 80 (113)
T ss_dssp ECTTSCEEEEHHHHTTTS--------CBCHHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGG
T ss_pred ccCcCCEEEeCCccCCcC--------cCCHHHHHHHHHHHHHHHHHc--CCeeEEEEcCHHH
Confidence 456788999777665432 258999999999999999999 5678888765443
No 163
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=43.08 E-value=51 Score=25.80 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=31.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++..|...... ....+-+. .-++++++.+++..|++.|++.|-
T Consensus 69 ~~aDvVi~~ag~~~~~g--------~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 69 AGSDVVVITAGIPRQPG--------QTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp TTCSEEEECCCCCCCTT--------CCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCCCEEEEcCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 46899999999643211 11122233 456778888888888887777653
No 164
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=42.75 E-value=23 Score=32.37 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=35.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
.+.|++|+.+|.|..... ++..+.+. +.-.+=.++|+.+.+.+|++-||+++-.|+.
T Consensus 572 ~~ADvvVv~vG~~~~~e~---Eg~DR~~l-~LP~~Q~~LI~aV~a~~~~tVVVl~sG~pv~ 628 (845)
T 3abz_A 572 AKHDKAVLIIGLNGEWET---EGYDRENM-DLPKRTNELVRAVLKANPNTVIVNQSGTPVE 628 (845)
T ss_dssp HTSSEEEEEEECCTTTSB---TTBCCSSS-CCCTTHHHHHHHHHHHCSCEEEEEECSSCCC
T ss_pred hcCCEEEEEEecCCcccc---ccCCcccc-cCCHHHHHHHHHHHHhCCCEEEEEeCCCccc
Confidence 468999999998764432 11111111 0113456788888888888877887766654
No 165
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=42.42 E-value=49 Score=22.02 Aligned_cols=60 Identities=10% Similarity=-0.081 Sum_probs=37.8
Q ss_pred chhhHHHhhcccCCCCCCC--CCcEEEEEec-cccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 45 NTRWALFLLHHIFPLDNSN--PPVATTIFFG-ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 45 ts~~~l~~l~~~~~~~~~~--~pd~Vvi~~G-~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
++..+.+.+.+.+. .. .+..|+|-+. ++.+...+ ...|..+.+.++++ +.+++++++.|
T Consensus 29 ~a~~~~~~l~~~~~---~~~~~~~~vvlDls~v~~iDssg-------------l~~L~~~~~~~~~~--g~~l~l~~~~~ 90 (130)
T 2kln_A 29 NAEDFRRRALTVVD---QDPGQVEWFVLNAESNVEVDLTA-------------LDALDQLRTELLRR--GIVFAMARVKQ 90 (130)
T ss_dssp THHHHHHHHHHHTT---SSSSCCEEEEEECSCCSSSBCST-------------TTHHHHHHHHHHTT--TEEEEEECCSS
T ss_pred hHHHHHHHHHHHHh---cCCCCceEEEEECCCCChhhHHH-------------HHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 44555555655543 12 4677888653 34433322 45677888888888 78999999876
Q ss_pred C
Q 030474 122 V 122 (177)
Q Consensus 122 ~ 122 (177)
.
T Consensus 91 ~ 91 (130)
T 2kln_A 91 D 91 (130)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.61 E-value=67 Score=20.48 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=41.5
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++.|+-.. ...+.+.+. .++.+.-. . +...+++.+.+ .+||+|++-+...|.
T Consensus 7 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~-------~~~dlii~d~~l~~~---- 63 (132)
T 3lte_A 7 KRILVVDDDQAM--------AAAIERVLKRDHWQVEIA-H---NGFDAGIKLST-------FEPAIMTLDLSMPKL---- 63 (132)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-S---SHHHHHHHHHH-------TCCSEEEEESCBTTB----
T ss_pred ccEEEEECCHHH--------HHHHHHHHHHCCcEEEEe-C---CHHHHHHHHHh-------cCCCEEEEecCCCCC----
Confidence 578888887553 233444442 34554422 1 22333433322 568999995544332
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITP 119 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~--p~~~vil~tp 119 (177)
+- .++++.+|+.. +...|++++.
T Consensus 64 --------~g-------~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 64 --------DG-------LDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp --------CH-------HHHHHHHHTTTCSSCCEEEEECC
T ss_pred --------CH-------HHHHHHHHhcCccCCCeEEEEeC
Confidence 11 24566777664 3455666654
No 167
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=41.60 E-value=23 Score=27.41 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=32.9
Q ss_pred CcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Q 030474 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~ 117 (177)
|.+-.|++|.||....-+... .....++..-+++++..+++. +..+.++
T Consensus 168 ~gvd~l~iG~~DL~~~lg~~~--~~~~p~v~~a~~~iv~aa~aa--G~~~~v~ 216 (267)
T 2vws_A 168 EGIDGVFIGPADLSASLGYPD--NAGHPEVQRIIETSIRRIRAA--GKAAGFL 216 (267)
T ss_dssp TTCCEEEECHHHHHHHTTCSS--SCCTHHHHHHHHHHHHHHHHT--TCEEEEE
T ss_pred CCCCEEEEChHHHHHHhCCCC--CCCCHHHHHHHHHHHHHHHHh--CCeEEEe
Confidence 456678899999986532111 123356888899999999988 4455443
No 168
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=41.54 E-value=51 Score=26.06 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCH-HHHHH---HHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPV-EEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~-~~~~~---nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|+.-- . ..+. +.... -++++++.+.+..|++.|+++|-|
T Consensus 73 ~~aDvVii~~g~p~k--~-------g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 125 (318)
T 1y6j_A 73 KDCDVIVVTAGANRK--P-------GETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP 125 (318)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred CCCCEEEEcCCCCCC--C-------CcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 468999999987321 0 1122 22233 367888888888899988887644
No 169
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=41.07 E-value=1e+02 Score=26.86 Aligned_cols=67 Identities=7% Similarity=-0.032 Sum_probs=45.2
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..+++|++.|.. -....+.+...+ .+||+|.++.-. ......+.++++.+++..+
T Consensus 124 ~~G~eVi~LG~~-vP~e~iv~aa~~-------~~~diVgLS~l~-----------------t~~~~~m~~~i~~Lr~~g~ 178 (579)
T 3bul_A 124 CNNYEIVDLGVM-VPAEKILRTAKE-------VNADLIGLSGLI-----------------TPSLDEMVNVAKEMERQGF 178 (579)
T ss_dssp TTTCEEEECCSS-BCHHHHHHHHHH-------HTCSEEEEECCS-----------------THHHHHHHHHHHHHHHTTC
T ss_pred HCCCEEEECCCC-CCHHHHHHHHHH-------cCCCEEEEEecC-----------------CCCHHHHHHHHHHHHHcCC
Confidence 468999999987 333333333222 578999886532 1124678889999999888
Q ss_pred CCEEEEEcCCCC
Q 030474 111 IMLVVLITPPPV 122 (177)
Q Consensus 111 ~~~vil~tp~p~ 122 (177)
+++|++-+.++.
T Consensus 179 ~i~ViVGGa~~~ 190 (579)
T 3bul_A 179 TIPLLIGGATTS 190 (579)
T ss_dssp CSCEEEESTTCC
T ss_pred CCeEEEEccccc
Confidence 888887776543
No 170
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=40.92 E-value=46 Score=26.73 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|..-- . + +...+.+.. -++++.+.+.+..|++.++++|-|
T Consensus 86 ~~aDiVvi~aG~~~k--p----G--~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP 138 (331)
T 4aj2_A 86 ANSKLVIITAGARQQ--E----G--ESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138 (331)
T ss_dssp TTEEEEEECCSCCCC--T----T--CCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEEccCCCCC--C----C--ccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 567999999886421 1 1 123334444 467788888888999998888843
No 171
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=40.66 E-value=93 Score=24.17 Aligned_cols=69 Identities=7% Similarity=-0.058 Sum_probs=40.2
Q ss_pred cCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC--
Q 030474 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP-- 110 (177)
Q Consensus 33 ~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p-- 110 (177)
+++|+|.|.. -....+.+... ..+||+|.++.=. .+-+.-..++.++++.++++..
T Consensus 157 G~eVi~LG~~-vp~e~iv~aa~-------e~~~d~VglS~l~--------------t~~~~~~~~~~~~i~~L~~~g~~~ 214 (262)
T 1xrs_B 157 MIDAYNLGSQ-VANEDFIKKAV-------ELEADVLLVSQTV--------------TQKNVHIQNMTHLIELLEAEGLRD 214 (262)
T ss_dssp TEEEEECCSS-BCHHHHHHHHH-------HTTCSEEEEECCC--------------CTTSHHHHHHHHHHHHHHHTTCGG
T ss_pred CcEEEECCCC-CCHHHHHHHHH-------HcCCCEEEEEeec--------------CCccchHHHHHHHHHHHHhcCCCC
Confidence 7888898874 22333333222 2678999886421 0111236788889999988752
Q ss_pred CCEEEEEcCCCCCh
Q 030474 111 IMLVVLITPPPVDE 124 (177)
Q Consensus 111 ~~~vil~tp~p~~~ 124 (177)
+++|++-++ +++.
T Consensus 215 ~i~vivGG~-~~~~ 227 (262)
T 1xrs_B 215 RFVLLCGGP-RINN 227 (262)
T ss_dssp GSEEEEECT-TCCH
T ss_pred CCEEEEECC-cCCH
Confidence 255555554 5554
No 172
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=40.06 E-value=1.1e+02 Score=22.63 Aligned_cols=67 Identities=6% Similarity=-0.144 Sum_probs=42.4
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEE--EeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTI--FFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi--~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~ 108 (177)
..+++|++.|.+= ....+.+... ..+||+|.+ +.-. ......++++++.+++.
T Consensus 118 ~~G~~Vi~LG~~v-p~e~iv~~~~-------~~~~d~v~l~~S~l~-----------------~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 118 ANGFQIVDLGVDV-LNENVVEEAA-------KHKGEKVLLVGSALM-----------------TTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp HTSCEEEECCSSC-CHHHHHHHHH-------HTTTSCEEEEEECSS-----------------HHHHTHHHHHHHHHHHT
T ss_pred HCCCeEEEcCCCC-CHHHHHHHHH-------HcCCCEEEEEchhcc-----------------cCcHHHHHHHHHHHHHc
Confidence 4689999999752 2333333222 267899998 4321 12355688899999998
Q ss_pred CC--CCEEEEEcCCCC
Q 030474 109 SP--IMLVVLITPPPV 122 (177)
Q Consensus 109 ~p--~~~vil~tp~p~ 122 (177)
.+ +++|++-+.++.
T Consensus 173 ~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 173 KLRDSVKCMFGGAPVS 188 (215)
T ss_dssp TCGGGSEEEEESSSCC
T ss_pred CCCCCCEEEEECCCCC
Confidence 65 577766665443
No 173
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=39.62 E-value=28 Score=28.82 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=53.7
Q ss_pred eEEEEecccCccccCCCChHHHHHHHH-cccCc--EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKAD--VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 4 ~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~--v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
||.++|.|.|+ .....|...+ ..++. +...+.+.+- .+++.--.... ..+||+|++..-.-|. ..
T Consensus 24 riavlg~~T~~------~l~~~l~~~~~~~g~~~~~~~~~y~~~~-~~ll~~~s~l~----~~~pd~v~~~~~~~~~-~~ 91 (387)
T 3nvb_A 24 KVALLGDTATQ------LLATAIKGEGILRNYNIELWEAEYNQVE-RQIMDPTSDYY----QFEPDYTIIFHSTHKL-LE 91 (387)
T ss_dssp EEEEEESSCCH------HHHHHHHHHHHHTTCEEEEEECCTTCHH-HHHHCTTSHHH----HHCCSEEEEECCHHHH-HH
T ss_pred EEEEeccchHH------HHHHHHHHHHHHCCCcceEEEcCcchHH-HHHhCCcchhh----hcCCCEEEEEecHHHh-cc
Confidence 89999999997 3555554443 22333 3333333321 11111111111 2589999998877665 22
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
... .......+...+.+..+.+.++++. .+.||+.+.+
T Consensus 92 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~ 129 (387)
T 3nvb_A 92 KHS-LVNSDLQNKLADDRLDFVRLLCEQG-IGRVIYYNYP 129 (387)
T ss_dssp HHH-TSCHHHHTTHHHHHHHHHHHHHHHC-CSEEEEECCC
T ss_pred ccc-CChHHHHHHHHHHHHHHHHHHHhcc-CceEEEeCCC
Confidence 100 0000011233455666777778775 6788888743
No 174
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=39.57 E-value=77 Score=25.34 Aligned_cols=52 Identities=6% Similarity=-0.054 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM-LVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~-~vil~tp 119 (177)
...|+|++..|....... .+..-.+.-..-++++++.+++..|+. +++++|-
T Consensus 78 ~daDvVvitAg~prkpG~-----tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 78 KDLDVAILVGSMPRRDGM-----ERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp TTCSEEEECCSCCCCTTC-----CTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 567999998875432111 011123444555888889999988876 6777774
No 175
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=39.00 E-value=73 Score=20.18 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=14.9
Q ss_pred HHHHHHHHh--CCCCEEEEEcCCC
Q 030474 100 IMVQHLKRL--SPIMLVVLITPPP 121 (177)
Q Consensus 100 ~ii~~~r~~--~p~~~vil~tp~p 121 (177)
++++.+++. .|.++||+++...
T Consensus 68 ~~~~~l~~~~~~~~~~ii~~s~~~ 91 (129)
T 1p6q_A 68 GLLQAVRANPATKKAAFIILTAQG 91 (129)
T ss_dssp HHHHHHTTCTTSTTCEEEECCSCC
T ss_pred HHHHHHhcCccccCCCEEEEeCCC
Confidence 356667664 4678888887654
No 176
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=38.50 E-value=63 Score=23.06 Aligned_cols=81 Identities=14% Similarity=-0.029 Sum_probs=44.9
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
|-.+|+++.|+-.. ...+...+.....+. ... +...+++.+ .+||+|++-+..-|.
T Consensus 1 Mm~~ilivdd~~~~--------~~~l~~~L~~~~~v~-~~~---~~~~al~~~---------~~~dlvllD~~lp~~--- 56 (220)
T 1p2f_A 1 MMWKIAVVDDDKNI--------LKKVSEKLQQLGRVK-TFL---TGEDFLNDE---------EAFHVVVLDVMLPDY--- 56 (220)
T ss_dssp CCEEEEEECSCHHH--------HHHHHHHHTTTEEEE-EES---SHHHHHHCC---------SCCSEEEEESBCSSS---
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHhCCCEE-EEC---CHHHHHHhc---------CCCCEEEEeCCCCCC---
Confidence 55689999888653 234555553211221 111 122223221 458999994443221
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+- .++++.+++..|.++||+++...
T Consensus 57 ---------~g-------~~~~~~lr~~~~~~~ii~lt~~~ 81 (220)
T 1p2f_A 57 ---------SG-------YEICRMIKETRPETWVILLTLLS 81 (220)
T ss_dssp ---------BH-------HHHHHHHHHHCTTSEEEEEESCC
T ss_pred ---------CH-------HHHHHHHHhcCCCCcEEEEEcCC
Confidence 11 24667777777889999998654
No 177
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=38.44 E-value=1.3e+02 Score=22.81 Aligned_cols=48 Identities=8% Similarity=-0.107 Sum_probs=28.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
.++|+|+-+.|....... ....+.-......+++.+++.. ..++|+++
T Consensus 61 ~~~d~Vih~a~~~~~~~~-------~~~~~~n~~~~~~ll~a~~~~~-~~r~v~~S 108 (311)
T 3m2p_A 61 NDVDAVVHLAATRGSQGK-------ISEFHDNEILTQNLYDACYENN-ISNIVYAS 108 (311)
T ss_dssp TTCSEEEECCCCCCSSSC-------GGGTHHHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred cCCCEEEEccccCCCCCh-------HHHHHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence 378999988776543210 1112222344577888888764 23588877
No 178
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=37.96 E-value=32 Score=28.24 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=35.7
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..+||+|+++.|. |....+. -+....+.+.+.+ +++.+++. +.+++++.---.+.
T Consensus 245 ~f~Pd~ivvsaG~-D~~~~Dp-lg~~~lt~~g~~~----~~~~~~~~--~~p~v~~~eGGY~~ 299 (367)
T 3max_A 245 MYQPSAVVLQCGA-DSLSGDR-LGCFNLTVKGHAK----CVEVVKTF--NLPLLMLGGGGYTI 299 (367)
T ss_dssp HHCCSEEEEECCG-GGBTTCS-SCCCCBCHHHHHH----HHHHHHTT--CCCEEEECCCCCSH
T ss_pred HhCCCEEEEECCc-cCcCCCC-CCCeeeCHHHHHH----HHHHHHhc--CCCEEEEeCCCCCh
Confidence 3689999999998 7665432 2334567777665 45556655 56777776554444
No 179
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=37.62 E-value=1.2e+02 Score=22.42 Aligned_cols=84 Identities=18% Similarity=0.095 Sum_probs=45.0
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+ ..++.+.- ..+| ..+++.+.+ .+||+|++-+..-+..
T Consensus 130 ~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~-a~~~---~eal~~l~~-------~~~dlvl~D~~mp~~~--- 187 (254)
T 2ayx_A 130 MMILVVDDHPIN--------RRLLADQLGSLGYQCKT-ANDG---VDALNVLSK-------NHIDIVLSDVNMPNMD--- 187 (254)
T ss_dssp CEEEEEESSHHH--------HHHHHHHHHHHTSEEEE-ECCS---HHHHHHHHH-------SCCSEEEEEESSCSSC---
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHHcCCEEEE-ECCH---HHHHHHHHh-------CCCCEEEEcCCCCCCC---
Confidence 467888877653 12344444 23455542 2333 333443332 4589999955443211
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
- .++++.+|+..|..+||+++.....+
T Consensus 188 ---------G-------~~l~~~ir~~~~~~piI~lt~~~~~~ 214 (254)
T 2ayx_A 188 ---------G-------YRLTQRIRQLGLTLPVIGVTANALAE 214 (254)
T ss_dssp ---------C-------HHHHHHHHHHHCCSCEEEEESSTTSH
T ss_pred ---------H-------HHHHHHHHhcCCCCcEEEEECCCCHH
Confidence 1 13445555555678899998765443
No 180
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=37.47 E-value=33 Score=28.26 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=35.6
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..+||+|+++.|. |....+. -+....+.+.|.+. .+.+++. +.+++++.---.+.
T Consensus 246 ~f~Pd~IvvsaG~-Da~~~Dp-Lg~l~Lt~~g~~~~----~~~l~~~--~~p~v~v~eGGY~~ 300 (376)
T 4a69_A 246 FYQPTCIVLQCGA-DSLGCDR-LGCFNLSIRGHGEC----VEYVKSF--NIPLLVLGGGGYTV 300 (376)
T ss_dssp HHCCSEEEEECCG-GGBTTCS-SCCCBBCHHHHHHH----HHHHHTT--CCCEEEECCCCCSH
T ss_pred HhCCCEEEEeCcc-cCCCCCc-ccCeecCHHHHHHH----HHHHHHc--CCCEEEEECCCCCh
Confidence 3689999999998 7655432 23445777777654 4556655 56777776554444
No 181
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=37.46 E-value=1.5e+02 Score=23.39 Aligned_cols=60 Identities=8% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCChh
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~ 125 (177)
...||+|++..|..=-...+ ....++.++..+.++++++.+++.+|++ ++|+.--|+..+
T Consensus 181 ~agpDiI~~h~glT~gglIG---~~~avs~~~~~e~i~~i~~a~~~vnpdv-ivLc~gGpIstp 240 (286)
T 2p10_A 181 KAGADILVCHMGLTTGGAIG---ARSGKSMDDCVSLINECIEAARTIRDDI-IILSHGGPIANP 240 (286)
T ss_dssp HHTCSEEEEECSCC------------CCCHHHHHHHHHHHHHHHHHHCSCC-EEEEESTTCCSH
T ss_pred HcCCCEEEECCCCCCCCccc---CCCcccHHHhHHHHHHHHHHHHHhCCCc-EEEecCCCCCCH
Confidence 36899999999943211111 1123688888999999999999999876 444554455443
No 182
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=36.80 E-value=77 Score=23.67 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=48.6
Q ss_pred CCceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEccc-CCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGY-GGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 1 ~~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~-~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
|+++|++.|-|=. -...+.+.| ..+.+|.-... .++-+. .+.+.+.+. ..++|+|+-+.|.....
T Consensus 4 M~m~ilVtGatG~--------iG~~l~~~L~~~g~~V~~~~r~~~D~~d--~~~~~~~~~---~~~~d~vi~~a~~~~~~ 70 (287)
T 3sc6_A 4 MKERVIITGANGQ--------LGKQLQEELNPEEYDIYPFDKKLLDITN--ISQVQQVVQ---EIRPHIIIHCAAYTKVD 70 (287)
T ss_dssp -CEEEEEESTTSH--------HHHHHHHHSCTTTEEEEEECTTTSCTTC--HHHHHHHHH---HHCCSEEEECCCCCCHH
T ss_pred ceeEEEEECCCCH--------HHHHHHHHHHhCCCEEEEecccccCCCC--HHHHHHHHH---hcCCCEEEECCcccChH
Confidence 5568888874411 224565555 34555554332 222211 111222222 12579998877765432
Q ss_pred ccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcC
Q 030474 79 LFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp 119 (177)
... ....+.+..| ...+++.+++. +.++|+++.
T Consensus 71 ~~~------~~~~~~~~~n~~~~~~l~~~~~~~--~~~~v~~SS 106 (287)
T 3sc6_A 71 QAE------KERDLAYVINAIGARNVAVASQLV--GAKLVYIST 106 (287)
T ss_dssp HHT------TCHHHHHHHHTHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred HHh------cCHHHHHHHHHHHHHHHHHHHHHc--CCeEEEEch
Confidence 210 0122333333 46777888877 458888763
No 183
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=36.43 E-value=87 Score=20.28 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=43.2
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
.+|+++.|+-.. ...+...+. .++.+.. ..+ ...+++.+.+ .+||+|++-+..-|.
T Consensus 4 ~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~---~~~al~~l~~-------~~~dlvi~D~~l~~~---- 60 (138)
T 3c3m_A 4 YTILVVDDSPMI--------VDVFVTMLERGGYRPIT-AFS---GEECLEALNA-------TPPDLVLLDIMMEPM---- 60 (138)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ESS---HHHHHHHHHH-------SCCSEEEEESCCSSS----
T ss_pred ceEEEEeCCHHH--------HHHHHHHHHHcCceEEE-eCC---HHHHHHHHhc-------cCCCEEEEeCCCCCC----
Confidence 478888888653 233444442 3455542 222 2333443322 468999995443221
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p 121 (177)
+- .++++.+++. .+.++||+++...
T Consensus 61 --------~g-------~~~~~~l~~~~~~~~~~ii~ls~~~ 87 (138)
T 3c3m_A 61 --------DG-------WETLERIKTDPATRDIPVLMLTAKP 87 (138)
T ss_dssp --------CH-------HHHHHHHHHSTTTTTSCEEEEESSC
T ss_pred --------CH-------HHHHHHHHcCcccCCCCEEEEECCC
Confidence 11 1345555553 3467899888665
No 184
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=36.37 E-value=59 Score=25.61 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=32.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|+|..|..= .. + +...+-+..| ++++++.+.+..|++.++++|-|
T Consensus 68 ~~aDvVvitAG~pr---kp---G--mtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNP 120 (294)
T 2x0j_A 68 KGSEIIVVTAGLAR---KP---G--MTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (294)
T ss_dssp TTCSEEEECCCCCC---CS---S--SCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred CCCCEEEEecCCCC---CC---C--CchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 46799999888532 11 1 1234444444 57788888888999988777643
No 185
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=35.52 E-value=68 Score=25.49 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=31.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|..--. + +...+... .-++++++.+.+..|++.++++|-|
T Consensus 75 ~~aDvVii~ag~~~k~------g--~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 127 (326)
T 2zqz_A 75 KDADLVVITAGAPQKP------G--ETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp GGCSEEEECCCCC-------------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred CCCCEEEEcCCCCCCC------C--CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 4679999999874211 1 11122222 4467777888888999998887643
No 186
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=35.20 E-value=90 Score=20.13 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=44.4
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
..+|+++-|+-.. ...+...+. .++..+-...+| ..+++.+.+..+. ..+||+|++ |...+
T Consensus 2 ~~~ILivdD~~~~--------~~~l~~~L~~~g~~~v~~~~~~---~~al~~~~~~~~~--~~~~dlvll-----D~~mp 63 (133)
T 2r25_B 2 SVKILVVEDNHVN--------QEVIKRMLNLEGIENIELACDG---QEAFDKVKELTSK--GENYNMIFM-----DVQMP 63 (133)
T ss_dssp CSCEEEECSCHHH--------HHHHHHHHHHTTCCCEEEESSH---HHHHHHHHHHHHH--TCCCSEEEE-----CSCCS
T ss_pred CceEEEEcCCHHH--------HHHHHHHHHHcCCceEEEECCH---HHHHHHHHHHHhc--CCCCCEEEE-----eCCCC
Confidence 3578888888653 233444442 233322223333 2333333321110 146899999 55443
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHh-CCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRL-SPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~-~p~~~vil~tp~p 121 (177)
+ .+- -++++.+|+. .+..+||++|...
T Consensus 64 ~-------~~G-------~~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 64 K-------VDG-------LLSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp S-------SCH-------HHHHHHHHHHSCCCSCEEEEESCC
T ss_pred C-------CCh-------HHHHHHHHhhcCCCCCEEEEECCC
Confidence 2 111 1455666653 4567888888654
No 187
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=35.19 E-value=96 Score=20.42 Aligned_cols=89 Identities=19% Similarity=0.135 Sum_probs=43.4
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcc-cCc-EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~-~~~-v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
.+|+++.|+-.. ...+...+.. +.. .+....+ ....++.+.+........+||+|++ |....
T Consensus 9 ~~ILivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~~---~~~al~~l~~~~~~~~~~~~dlill-----D~~lp 72 (149)
T 1i3c_A 9 KVILLVEDSKAD--------SRLVQEVLKTSTIDHELIILRD---GLAAMAFLQQQGEYENSPRPNLILL-----DLNLP 72 (149)
T ss_dssp EEEEEECCCHHH--------HHHHHHHHHSCCSCEEEEEECS---HHHHHHHHTTCGGGTTCCCCSEEEE-----CSCCS
T ss_pred CeEEEEECCHHH--------HHHHHHHHHhcCCCccEEEeCC---HHHHHHHHHhccccccCCCCCEEEE-----eCCCC
Confidence 378888887653 2345555532 231 1112222 2334444432110000246899999 54432
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~p 121 (177)
+ .+- .++++.+++. .+.++||+++...
T Consensus 73 ~-------~~g-------~~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 73 K-------KDG-------REVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp S-------SCH-------HHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred C-------CcH-------HHHHHHHHhCcCcCCCeEEEEECCC
Confidence 1 111 1345566654 2577888887653
No 188
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=34.75 E-value=72 Score=25.05 Aligned_cols=49 Identities=12% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHH---HHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~---nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++++|...... +...+-... -++++++.+.+..|++.+|+++-
T Consensus 66 ~~aDvViiav~~~~~~g--------~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 66 KGSDVVIVAAGVPQKPG--------ETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp TTCSEEEECCCCCCCSS--------CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCEEEEccCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 46799999999755211 112333333 36777777877778887777653
No 189
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=34.74 E-value=43 Score=23.29 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCh----hHHHHHHHHhCCCcee
Q 030474 99 KIMVQHLKRLSPIMLVVLITPPPVDE----DGRMEYAKYVNSSPYI 140 (177)
Q Consensus 99 ~~ii~~~r~~~p~~~vil~tp~p~~~----~~~~~~~a~~~~vp~i 140 (177)
.++++.+++. .+..|+-+|.+... ....++.|-+++||++
T Consensus 86 ~~i~d~i~~g--~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 86 SSIRKLIRDG--SIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp BCHHHHHHTT--SCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEE
T ss_pred ccHHHHHHCC--CceEEEECCCCCCcCCccHHHHHHHHHHhCCCeE
Confidence 3578888877 78889988877422 2345677889999998
No 190
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=33.99 E-value=46 Score=27.54 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 62 ~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..+||+|+++.|. |....+. -+...++.+.|.+..+ .+++. +.+++++.---.+.
T Consensus 254 ~F~PdlIvvsaG~-Da~~~Dp-Lg~l~lt~~g~~~~~~----~l~~~--~~p~l~~~gGGY~~ 308 (388)
T 3ew8_A 254 AFNPKAVVLQLGA-DTIAGDP-MCSFNMTPVGIGKCLK----YILQW--QLATLILGGGGYNL 308 (388)
T ss_dssp HHCCSEEEEECCS-TTBTTCT-TCCCCBCHHHHHHHHH----HHHTT--CCEEEEECCCCCSH
T ss_pred HhCCCEEEEECCc-cCCCCCC-CCCCcCCHHHHHHHHH----HHHhc--CCCEEEEECCCCCh
Confidence 4689999999998 6655431 2334567777765544 44444 46777776544444
No 191
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=33.31 E-value=41 Score=24.86 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=46.9
Q ss_pred cccCCcch---hhHHHhhcccCCCCCCCCCcEEEE-EeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEE
Q 030474 39 RGYGGYNT---RWALFLLHHIFPLDNSNPPVATTI-FFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLV 114 (177)
Q Consensus 39 ~G~~G~ts---~~~l~~l~~~~~~~~~~~pd~Vvi-~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~v 114 (177)
.|.||-.. .....+|+++++ ...+|+|+- .-|+++ .+....+..+.|..+...++.++|++++
T Consensus 46 lgASG~~eg~I~r~~~~Fk~Lv~---n~n~dIvF~deE~tga----------dR~Mt~Rc~~kL~~La~~V~nqwpGvkL 112 (187)
T 3k7i_B 46 LGASGRYEGKIARSSERFKELTP---NYNPDIIFKDEENTGA----------DRLMTQRCKDRLNSLAISVMNQWPGVKL 112 (187)
T ss_dssp TTTTCCCCCCCCTTSGGGGGCEE---CCCTTEEECCTTSSSG----------GGEECHHHHHHHHHHHHHHHHHSTTCCE
T ss_pred cCCcCcccCcccCCCcccccccc---cCCCceEecCccCCCc----------chhhCHHHHHHHHHHHHHHHHhcCCceE
Confidence 56666432 222356777776 468888874 333332 2345678999999999999999999898
Q ss_pred EEEc
Q 030474 115 VLIT 118 (177)
Q Consensus 115 il~t 118 (177)
-++.
T Consensus 113 RVte 116 (187)
T 3k7i_B 113 RVTK 116 (187)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8876
No 192
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=33.16 E-value=47 Score=25.62 Aligned_cols=53 Identities=9% Similarity=0.010 Sum_probs=35.0
Q ss_pred CcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+.+-.+++|.||....-+... .....++..-+++++..+++. +..+-++...|
T Consensus 166 ~~vd~l~iG~~DL~~~lg~~~--~~~~p~v~~a~~~iv~aa~aa--G~~~g~~~~~~ 218 (261)
T 3qz6_A 166 QGVDAVIFGPRDLSNDLGIIG--QTEHPKVYECYEKVYRAADRQ--GVVKGFFTAAD 218 (261)
T ss_dssp TTCCEEEECHHHHHHHTTCTT--CTTCHHHHHHHHHHHHHHHHH--TCEEEEEESSC
T ss_pred CCCCEEEECHHHHHHHhCCCC--CCCCHHHHHHHHHHHHHHHHh--CCCEEEEeCCH
Confidence 356678889999976532111 112356888899999999999 45665555443
No 193
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=33.14 E-value=58 Score=25.68 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=32.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCcc-CCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQH-VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~-~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|..--. +..+ .-...-..-++++++.+.+..|++.++++|-|
T Consensus 73 ~~aDvVvi~ag~~~~~------g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 125 (317)
T 3d0o_A 73 HDADLVVICAGAAQKP------GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125 (317)
T ss_dssp TTCSEEEECCCCCCCT------TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCEEEECCCCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 5689999999873211 1000 01122334567777788888899998887733
No 194
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=32.84 E-value=1e+02 Score=24.07 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++++|+.-.. + ....+-+ ..-++++++.+++..|++.+++++-|
T Consensus 68 ~~aDvViiav~~p~~~--g------~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 120 (310)
T 1guz_A 68 ANSDIVIITAGLPRKP--G------MTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120 (310)
T ss_dssp TTCSEEEECCSCCCCT--T------CCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred CCCCEEEEeCCCCCCC--C------CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4679999999863211 0 1122222 34456777788877889988887654
No 195
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=32.25 E-value=78 Score=23.72 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=9.8
Q ss_pred CceEEEEecccC
Q 030474 2 RPQIVLFGDSIT 13 (177)
Q Consensus 2 ~~~I~~~GDSit 13 (177)
+++|+++-|+-+
T Consensus 4 ~~~ILiVdD~~~ 15 (259)
T 3luf_A 4 KQKILIVEDSMT 15 (259)
T ss_dssp CCEEEEECCCHH
T ss_pred CCeEEEEECCHH
Confidence 468999999866
No 196
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=32.12 E-value=1.9e+02 Score=23.04 Aligned_cols=82 Identities=13% Similarity=-0.021 Sum_probs=45.1
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++-|+-.. ...+...+. .++.+.- ..+| ..+++.+.+ .+||+|++-+..-|...
T Consensus 1 ~~ILiVDDd~~~--------~~~l~~~L~~~g~~v~~-a~~~---~eal~~l~~-------~~~DlvllDi~mP~~dG-- 59 (368)
T 3dzd_A 1 KRVLVVDDEESI--------TSSLSAILEEEGYHPDT-AKTL---REAEKKIKE-------LFFPVIVLDVWMPDGDG-- 59 (368)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ESSH---HHHHHHHHH-------BCCSEEEEESEETTEET--
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHHcCCEEEE-ECCH---HHHHHHHHh-------CCCCEEEEeCCCCCCCH--
Confidence 367888777553 233444442 2454422 2222 333443332 46899999544433211
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
.++++.+++..|.++||++|...-
T Consensus 60 -----------------~ell~~lr~~~~~~pvI~lT~~~~ 83 (368)
T 3dzd_A 60 -----------------VNFIDFIKENSPDSVVIVITGHGS 83 (368)
T ss_dssp -----------------TTHHHHHHHHCTTCEEEEEECSSC
T ss_pred -----------------HHHHHHHHhhCCCCeEEEEeCCCC
Confidence 135566777788899999986543
No 197
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=31.99 E-value=43 Score=24.70 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 113 LVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 113 ~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.|++++||-.......+.++++.++++|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 58899999999988888888888888874
No 198
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=31.72 E-value=84 Score=25.75 Aligned_cols=50 Identities=10% Similarity=-0.050 Sum_probs=30.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHh-CCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRL-SPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~-~p~~~vil~tp~ 120 (177)
...|+|||..|..-- . + +...+-+..| ++.+++.+.+. .|++.+++++-|
T Consensus 107 ~daDvVVitag~prk--p----G--~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 107 EDVDWALLIGAKPRG--P----G--MERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp TTCSEEEECCCCCCC--T----T--CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCCEEEEcCCCCCC--C----C--CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 457888887775321 1 1 1233444444 56666678776 789988888743
No 199
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=31.58 E-value=75 Score=24.98 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=31.9
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++.+|.- .. + +...+...+| ++++++.+.+..|++.++++|-
T Consensus 76 ~~aD~Vi~aag~~---~p----G--~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 76 AHSKVVIFTVNSL---GS----S--QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp TTCSEEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCEEEEcCCCC---CC----C--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 5689999999973 21 1 1233444555 6777888888789998777764
No 200
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=31.56 E-value=1.1e+02 Score=20.39 Aligned_cols=60 Identities=18% Similarity=-0.017 Sum_probs=38.0
Q ss_pred chhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 45 NTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 45 ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
++..+.+.+...+. ..++..|+| |...-. .--..-...+..+.+.++.. ++++++++..|
T Consensus 26 ~a~~l~~~ll~~i~---~~~~~~vIl-----DlsgV~-------~iDs~g~~~L~~~~~~~~l~--G~~~~l~Gi~p 85 (123)
T 3zxn_A 26 SVIQFKEELLHNIT---GVAGKGLVI-----DISALE-------VVDEFVTRVLIEISRLAELL--GLPFVLTGIKP 85 (123)
T ss_dssp HHHHHHHHHHHHHT---SSCCSEEEE-----ECTTCS-------SCCHHHHHHHHHHHHHHHHH--TCCEEEECCCH
T ss_pred HHHHHHHHHHHHHH---hcCCCEEEE-----EcCCCC-------cccHHHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 44455555544443 256788888 443221 11233467888888888888 68899999766
No 201
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.65 E-value=1.4e+02 Score=21.72 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHHh--------CCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 90 PVEEYGDNLKIMVQHLKRL--------SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~--------~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
..++..+.++++++.++.. .+...+++.+||...+....+.++.+.+.+++
T Consensus 10 G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 10 GMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp SCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3456677777777765421 12345889999999998777777776676666
No 202
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=30.57 E-value=1.3e+02 Score=20.88 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..|.+++.+-.+|. ..+..+++...+..++...++.+++++.
T Consensus 95 ~~~~~i~v~d~~~~-------------~~~~~~~~~~~l~~~~~~~~~~piilv~ 136 (196)
T 3llu_A 95 GTGALIYVIDAQDD-------------YMEALTRLHITVSKAYKVNPDMNFEVFI 136 (196)
T ss_dssp TCSEEEEEEETTSC-------------CHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCEEEEEEECCCc-------------hHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 46888888866553 1234566667777776667788888876
No 203
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=30.50 E-value=1.5e+02 Score=22.65 Aligned_cols=82 Identities=17% Similarity=0.066 Sum_probs=43.2
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHH-cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l-~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
..+|+++-|+-+. ...+...+ ..++.|.-...+| ..+++.+.+ .+||+|++ |...+
T Consensus 160 ~~rILvVdD~~~~--------~~~l~~~L~~~g~~v~~~a~~g---~eAl~~~~~-------~~~dlvl~-----D~~MP 216 (286)
T 3n0r_A 160 ATEVLIIEDEPVI--------AADIEALVRELGHDVTDIAATR---GEALEAVTR-------RTPGLVLA-----DIQLA 216 (286)
T ss_dssp CCEEEEECCSHHH--------HHHHHHHHHHTTCEEEEEESSH---HHHHHHHHH-------CCCSEEEE-----ESCCT
T ss_pred CCcEEEEcCCHHH--------HHHHHHHhhccCceEEEEeCCH---HHHHHHHHh-------CCCCEEEE-----cCCCC
Confidence 3578888888663 13344444 2356665233344 233443332 56899999 44433
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+..+| . ++++.+|+.. +++||++|..
T Consensus 217 d~mdG---~----------e~~~~ir~~~-~~piI~lT~~ 242 (286)
T 3n0r_A 217 DGSSG---I----------DAVKDILGRM-DVPVIFITAF 242 (286)
T ss_dssp TSCCT---T----------TTTHHHHHHT-TCCEEEEESC
T ss_pred CCCCH---H----------HHHHHHHhcC-CCCEEEEeCC
Confidence 10011 1 2234444444 6789999875
No 204
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=29.97 E-value=1.2e+02 Score=23.72 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccC-CHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHV-PVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~-~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|+++.|..-... ..+. -..+-..-++++++.+.+..|++.++++|-
T Consensus 73 ~~aDvViia~~~~~~~g------~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 73 RDADLVVICAGANQKPG------ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp TTCSEEEECCSCCCCTT------TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCCCEEEEcCCCCCCCC------CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 46899999998732211 1011 123334456777778888889988877754
No 205
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=29.60 E-value=49 Score=21.42 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCC
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
++++.+++..|+++||+++...-
T Consensus 66 ~~~~~l~~~~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 66 EVLAEIRKKHLNIKVIIVTTFKR 88 (133)
T ss_dssp HHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHHHHHHHCCCCcEEEEecCCC
Confidence 45667777778899999986543
No 206
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=29.55 E-value=1e+02 Score=19.15 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=42.6
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
+++|+++.|+-.. ...+...+. .++.+.- ..+ ...+++.+.+ .+||+|++ |....
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~l~~~~~~v~~-~~~---~~~a~~~~~~-------~~~dlvi~-----D~~l~ 58 (123)
T 1xhf_A 3 TPHILIVEDELVT--------RNTLKSIFEAEGYDVFE-ATD---GAEMHQILSE-------YDINLVIM-----DINLP 58 (123)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEE-ESS---HHHHHHHHHH-------SCCSEEEE-----CSSCS
T ss_pred CceEEEEeCCHHH--------HHHHHHHHhhCCcEEEE-eCC---HHHHHHHHhc-------CCCCEEEE-----cCCCC
Confidence 3589999888653 233444442 2454432 112 2333333322 46899998 44332
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
+ .+-- ++++.+++. |..++|+++...
T Consensus 59 ~-------~~g~-------~~~~~l~~~-~~~~ii~~s~~~ 84 (123)
T 1xhf_A 59 G-------KNGL-------LLARELREQ-ANVALMFLTGRD 84 (123)
T ss_dssp S-------SCHH-------HHHHHHHHH-CCCEEEEEESCC
T ss_pred C-------CCHH-------HHHHHHHhC-CCCcEEEEECCC
Confidence 1 1111 345555655 578888887654
No 207
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=29.16 E-value=42 Score=25.67 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=32.6
Q ss_pred CcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Q 030474 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~ 117 (177)
|.+-.+++|+||....-+... .....++..-+..++..+++.. ..+.++
T Consensus 168 ~~vd~l~iG~~DL~~~lg~~~--~~~~p~v~~a~~~iv~aa~a~G--~~~~v~ 216 (256)
T 1dxe_A 168 EGVDGIFVGPSDLAAALGHLG--NASHPDVQKAIQHIFNRASAHG--KPSGIL 216 (256)
T ss_dssp TTCCEEEECHHHHHHHTTCTT--CTTSHHHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred CCCCEEEEChHHHHHHhCCCC--CCCCHHHHHHHHHHHHHHHHhC--CceEEe
Confidence 456678899999986532111 1223568888999999999884 444443
No 208
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=29.06 E-value=1.8e+02 Score=22.30 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 91 VEEYGDNLKIMVQHLKRL-SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~-~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+...+.+...++..+.. .+...|++.+|+...+....+.++...+.+|+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 445566777777777643 22346899999999999888777777777766
No 209
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=28.93 E-value=1.2e+02 Score=19.59 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=43.1
Q ss_pred CceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccccc
Q 030474 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (177)
Q Consensus 2 ~~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~ 80 (177)
+++|+++.|+-.. ...+...+. .++.+.- .. +...+++.+.+ .+||+|++-+..-|..
T Consensus 4 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~al~~~~~-------~~~dlvllD~~l~~~~-- 62 (136)
T 2qzj_A 4 QTKILIIDGDKDN--------CQKLKGFLEEKGISIDL-AY---NCEEAIGKIFS-------NKYDLIFLEIILSDGD-- 62 (136)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEE-ES---SHHHHHHHHHH-------CCCSEEEEESEETTEE--
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHHCCCEEEE-EC---CHHHHHHHHHh-------cCCCEEEEeCCCCCCC--
Confidence 3588999888653 234555553 2344431 11 22333433322 4689999955433211
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
- .++++.+++.. .++||+++...
T Consensus 63 ----------g-------~~l~~~l~~~~-~~~ii~ls~~~ 85 (136)
T 2qzj_A 63 ----------G-------WTLCKKIRNVT-TCPIVYMTYIN 85 (136)
T ss_dssp ----------H-------HHHHHHHHTTC-CCCEEEEESCC
T ss_pred ----------H-------HHHHHHHccCC-CCCEEEEEcCC
Confidence 1 13556666554 67788887554
No 210
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=28.19 E-value=1.2e+02 Score=20.25 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhC---CCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVN---SSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~---~vp~i 140 (177)
.+.+.+.++.+... ...|++.+++-..+....+.++... +.||+
T Consensus 10 ~~~~~~~~~~~a~~--~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 10 INQYRRRLQQLSET--DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp HHHHHHHHHHHTTC--CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred HHHHHHHHHHHhCC--CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 33444444444333 4679999999999988777776643 45555
No 211
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.73 E-value=1.4e+02 Score=20.16 Aligned_cols=65 Identities=9% Similarity=-0.186 Sum_probs=40.3
Q ss_pred cccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCC
Q 030474 31 CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 31 ~~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p 110 (177)
..+++|++.|.. -+.....+... ..+||+|.++.=. ......+.++++.++++.+
T Consensus 29 ~~G~~Vi~lG~~-~p~e~~v~~a~-------~~~~d~v~lS~~~-----------------~~~~~~~~~~i~~l~~~g~ 83 (137)
T 1ccw_A 29 NAGFNVVNIGVL-SPQELFIKAAI-------ETKADAILVSSLY-----------------GQGEIDCKGLRQKCDEAGL 83 (137)
T ss_dssp HTTCEEEEEEEE-ECHHHHHHHHH-------HHTCSEEEEEECS-----------------STHHHHHTTHHHHHHHTTC
T ss_pred HCCCEEEECCCC-CCHHHHHHHHH-------hcCCCEEEEEecC-----------------cCcHHHHHHHHHHHHhcCC
Confidence 468999999873 22333333222 2578999886532 1234567778888888754
Q ss_pred -CCEEEEEcCC
Q 030474 111 -IMLVVLITPP 120 (177)
Q Consensus 111 -~~~vil~tp~ 120 (177)
+++|++-+.+
T Consensus 84 ~~i~v~vGG~~ 94 (137)
T 1ccw_A 84 EGILLYVGGNI 94 (137)
T ss_dssp TTCEEEEEESC
T ss_pred CCCEEEEECCC
Confidence 5777776654
No 212
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=27.35 E-value=1.2e+02 Score=23.43 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~t 118 (177)
...|+|+++.|.-+... ....+....| ++++++.+++..|++.|+.++
T Consensus 74 ~~aD~Vii~v~~~~~~g--------~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 74 RDADMVVITAGPRQKPG--------QSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp TTCSEEEECCCCCCCTT--------CCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CCCCEEEECCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 46799999998644221 1223333444 346777777666777666655
No 213
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=27.30 E-value=1.1e+02 Score=20.23 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=36.1
Q ss_pred chhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 45 NTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 45 ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
++..+.+.+++. . ..+..|+|-+..=.. ++. .-...|.++.+.++++ +.+++++++.|.
T Consensus 34 ~a~~~~~~l~~~-~----~~~~~vvlDls~v~~-----------iDs-sgl~~L~~~~~~~~~~--g~~l~l~~~~~~ 92 (130)
T 4dgh_A 34 AAETFERVMGSI-Q----ETPQILILRLKWVPF-----------MDI-TGIQTLEEMIQSFHKR--GIKVLISGANSR 92 (130)
T ss_dssp HHHHHHHHHHHS-S----SCCSEEEEECTTCCC-----------CCH-HHHHHHHHHHHHHHTT--TCEEEEECCCHH
T ss_pred hHHHHHHHHHHh-c----cCCCEEEEECCCCCc-----------ccH-HHHHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence 344444555432 2 456788884432111 222 2367788888999988 789999997653
No 214
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=27.30 E-value=1.5e+02 Score=21.96 Aligned_cols=31 Identities=6% Similarity=-0.058 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 111 IMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 111 ~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
...|++++||-.......+.++++.++++++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4678889999999988888888878888874
No 215
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=27.01 E-value=95 Score=19.54 Aligned_cols=23 Identities=9% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHH--hCCCCEEEEEcCCCC
Q 030474 100 IMVQHLKR--LSPIMLVVLITPPPV 122 (177)
Q Consensus 100 ~ii~~~r~--~~p~~~vil~tp~p~ 122 (177)
++++.+++ ..|.++||+++....
T Consensus 66 ~l~~~l~~~~~~~~~~ii~~s~~~~ 90 (128)
T 1jbe_A 66 ELLKTIRAXXAMSALPVLMVTAEAK 90 (128)
T ss_dssp HHHHHHHC--CCTTCCEEEEESSCC
T ss_pred HHHHHHHhhcccCCCcEEEEecCcc
Confidence 35666666 346788888876543
No 216
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=26.95 E-value=1.4e+02 Score=22.32 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHH--hCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 92 EEYGDNLKIMVQHLKR--LSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~--~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
++..+....+++.++. ..+...+++.+|+-..+....+.++...+.+|+
T Consensus 43 ~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 43 TRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 4445554446666653 223356888999999998888788777787876
No 217
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A
Probab=26.89 E-value=79 Score=26.80 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=38.5
Q ss_pred CcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
..+=.+++| |-....+ ..-..++++|.+.+++..+.+|+..|+++|+.+++..
T Consensus 173 ~~vkyweiG-NE~~g~w---~~g~~t~~~Y~~~~~~~a~a~k~~dP~i~via~G~~~ 225 (513)
T 2c7f_A 173 HNIKVWCLG-NAMDGPW---QVGHKTMDEYGRIAEETARAMKMIDPSIELVACGSSS 225 (513)
T ss_dssp CCCCEEEES-CCCCCTT---STTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred CCceEEEec-cCccccc---ccCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 355677776 5543221 0013589999999999999999999999988887654
No 218
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=26.85 E-value=1.3e+02 Score=20.03 Aligned_cols=45 Identities=7% Similarity=-0.073 Sum_probs=30.9
Q ss_pred CCCcEEEEEec-cccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 030474 63 NPPVATTIFFG-ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 63 ~~pd~Vvi~~G-~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
..+..|+|-+. ++.+ +. .=...|..+.+.++++ +.+++++++.|.
T Consensus 50 ~~~~~vvlDls~v~~i------------Ds-sgl~~L~~~~~~~~~~--g~~l~l~~~~~~ 95 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVI------------DA-TGMHALWEFQESCEKR--GTILLLSGVSDR 95 (135)
T ss_dssp SCCSEEEEECTTCSCB------------CH-HHHHHHHHHHHHHHHH--TCEEEEESCCHH
T ss_pred CCCcEEEEEcCCCCcc------------CH-HHHHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence 45678888543 2222 22 2367788888999998 789999997653
No 219
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=26.66 E-value=90 Score=22.18 Aligned_cols=39 Identities=10% Similarity=-0.023 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCChh------HHHHHHHHhCCCcee
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPVDED------GRMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~~~~------~~~~~~a~~~~vp~i 140 (177)
+|++.+++. .+..|+-+|.|.... ..-.+.|..++||++
T Consensus 73 ~I~d~I~~g--eIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 73 QVGALISEG--KIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp HHHHHHHTT--CCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE
T ss_pred hHHHHHHCC--CccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE
Confidence 578888877 788899888865421 224667889999998
No 220
>1qoz_A AXE, acetyl xylan esterase; hydrolase, xylan degradation; HET: NAG; 1.90A {Trichoderma reesei} SCOP: c.69.1.30
Probab=26.49 E-value=68 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
.+=.+++.+.|+...++.|+.+|+|++
T Consensus 62 ~~G~~~~~~~i~~~~~~CP~tkivl~G 88 (207)
T 1qoz_A 62 VNGTNAAAAAINNFHNSCPDTQLVLVG 88 (207)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 344667777788888899999999986
No 221
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=26.46 E-value=43 Score=26.83 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=31.1
Q ss_pred EEEEEecccccccc--C--CCCCC----ccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 67 ATTIFFGANDAALF--G--RTSER----QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 67 ~Vvi~~G~ND~~~~--~--~~~~~----~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
+=.+++|+||.... . +.+.. .......+..-++.+++.+++. +.++-+++
T Consensus 197 vD~~siGtnDLtq~~lg~dR~~~~~~~~~~~~~p~v~~ai~~vv~aar~a--G~~vgvcg 254 (324)
T 2xz9_A 197 VDFFSIGTNDLTQYTLAVDRMNEHVKEYYQPFHPAILRLVKMVIDAAHKE--GKFAAMCG 254 (324)
T ss_dssp CSEEEECHHHHHHHHTTCCTTCGGGGGGCCTTCHHHHHHHHHHHHHHHHT--TCEEEECS
T ss_pred CcEEEECHHHHHHHHhCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHH--CCceeecC
Confidence 44788899999832 1 11110 0011256888999999999988 56665543
No 222
>1g66_A Acetyl xylan esterase II; serine hydrolase, acetyl xylopyranose, hydrolase; 0.90A {Penicillium purpurogenum} SCOP: c.69.1.30 PDB: 1bs9_A 2axe_A*
Probab=26.37 E-value=67 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
+..+=.+++.++|+...++.|+.+|+|++
T Consensus 60 S~~~G~~~~~~~i~~~~~~CP~tkivl~G 88 (207)
T 1g66_A 60 SVAQGIAAVASAVNSFNSQCPSTKIVLVG 88 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 34555677888888888899999999986
No 223
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=26.24 E-value=1.4e+02 Score=26.70 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=33.0
Q ss_pred CCCcEEEEEeccccccccC-C--CCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 63 NPPVATTIFFGANDAALFG-R--TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~-~--~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
.+.|++|+.+|.+. .... . .+...+.+.+ .-.+=.++|+.+.+.++++-||+++-.|+.-
T Consensus 426 ~~aDv~Iv~vg~~~-gEg~~~~~g~~gDR~~l~-Lp~~Q~~Li~~v~~~~~~~VVVl~sG~p~~~ 488 (713)
T 3zyz_A 426 RGKDVAIVFITADS-GEGYITVEGNAGDRNNLD-PWHNGNALVQAVAGANSNVIVVVHSVGAIIL 488 (713)
T ss_dssp TTCSEEEEEEEECC-BCTTCCBTTBCSSCSCSS-CSTTHHHHHHHHHHHCSCEEEEEEESSCCCC
T ss_pred hcCCEEEEEecccC-CCCccccccCCCCccccc-CChhHHHHHHHHHHhCCCeEEEEecCCcccc
Confidence 56799999998642 1110 0 0000111110 0112257888888888877777777667653
No 224
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=26.00 E-value=1.5e+02 Score=23.00 Aligned_cols=49 Identities=10% Similarity=-0.057 Sum_probs=31.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhC-CCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLS-PIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~-p~~~vil~tp 119 (177)
..+|+|+...|...... ..+.+.+..| ..++++.+++.. |++++++++.
T Consensus 79 ~~~D~Vih~Ag~~~~~~--------~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~sn 131 (327)
T 1y7t_A 79 KDADYALLVGAAPRKAG--------MERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (327)
T ss_dssp TTCSEEEECCCCCCCTT--------CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCCEEEECCCcCCCCC--------CCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 46899999988654211 1123334444 566777888875 7788888764
No 225
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum}
Probab=25.91 E-value=97 Score=26.89 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=40.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
++..+=.+++| |-....+ ..-..++++|.+.+++..+.+|+..|+++|+.+++..
T Consensus 203 ep~~vkyweIG-NE~~g~W---~~G~~t~e~Y~~~~~~~a~AiK~vdP~i~via~G~~~ 257 (574)
T 2y2w_A 203 EPMDIKMWCIG-NEMDGPW---QVGHMSPEEYAGAVDKVAHAMKLAESGLELVACGSSG 257 (574)
T ss_dssp SCCCCCEEEES-SCTTSTT---STTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEECCSC
T ss_pred CCcceeEEEec-ccccccc---ccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 34477788888 5443221 0013579999999999999999999999999888754
No 226
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=25.84 E-value=40 Score=27.22 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=33.3
Q ss_pred CcEEEEEeccccccccCCC-----CCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 65 PVATTIFFGANDAALFGRT-----SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 65 pd~Vvi~~G~ND~~~~~~~-----~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
|.+-.|++|+||....... -+... ..++..-+++++..+++.. ..+..++..|
T Consensus 200 ~~vD~l~iG~~DLs~~~~~~~~~~lG~~~--~p~v~~a~~~iv~aaraaG--k~~g~~~~d~ 257 (339)
T 1izc_A 200 PEIHGLMFGPGDYMIDAGLDLNGALSGVP--HPTFVEAMTKFSTAAQRNG--VPIFGGALSV 257 (339)
T ss_dssp TTCCCEEECHHHHHHHTTCCTTCCTTSCC--CHHHHHHHHHHHHHHHHTT--CCEEEECSSG
T ss_pred CCCCEEEECHHHHHhhhhcccchhhCCCC--CHHHHHHHHHHHHHHHHhC--CceeEecCCH
Confidence 4566788999999865100 00111 2568888999999999884 4454444333
No 227
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A
Probab=25.78 E-value=90 Score=26.30 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=38.2
Q ss_pred cEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 66 VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 66 d~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
.+=.+++| |-....+ ..-..++++|.+.+++..+.+|+..|+++|+.+++..
T Consensus 166 ~v~yweiG-NE~~g~w---~~g~~t~~~Y~~~~~~~a~aik~~dP~i~via~G~~~ 217 (502)
T 1qw9_A 166 KIKTWCLG-NAMDGPW---QIGHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSN 217 (502)
T ss_dssp CCCEEEES-SCCCSTT---STTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred CCeEEEEe-CCCCCCc---CCCCcCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 66677776 5543221 0013589999999999999999999999988877654
No 228
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=25.32 E-value=1.6e+02 Score=19.98 Aligned_cols=69 Identities=7% Similarity=-0.017 Sum_probs=36.6
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC-----CCCChhHHHHHHHHhCCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP-----PPVDEDGRMEYAKYVNSS 137 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp-----~p~~~~~~~~~~a~~~~v 137 (177)
...|.+++.+-.+|... ....+..+++...+..++...++.+++++.- .....+ ..+..+++.++
T Consensus 96 ~~~d~~i~v~D~~~~~~---------~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~-~~~~~~~~~~~ 165 (198)
T 3t1o_A 96 RGVDGIVFVADSAPNRL---------RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE-MVRAVVDPEGK 165 (198)
T ss_dssp TTCCEEEEEEECCGGGH---------HHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHH-HHHHHHCTTCC
T ss_pred hcCCEEEEEEECCcchh---------hHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHH-HHHHHHHhcCC
Confidence 45688888876654321 1123344555556666654445677777651 122222 23344556666
Q ss_pred -ceee
Q 030474 138 -PYIN 141 (177)
Q Consensus 138 -p~id 141 (177)
+++.
T Consensus 166 ~~~~~ 170 (198)
T 3t1o_A 166 FPVLE 170 (198)
T ss_dssp SCEEE
T ss_pred ceEEE
Confidence 7774
No 229
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=25.31 E-value=2.3e+02 Score=21.63 Aligned_cols=9 Identities=11% Similarity=-0.263 Sum_probs=7.2
Q ss_pred CcEEEEEec
Q 030474 65 PVATTIFFG 73 (177)
Q Consensus 65 pd~Vvi~~G 73 (177)
.|+|++++.
T Consensus 71 aDvvi~~vp 79 (296)
T 3qha_A 71 ADLIHITVL 79 (296)
T ss_dssp SSEEEECCS
T ss_pred CCEEEEECC
Confidence 799998664
No 230
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=25.08 E-value=1.2e+02 Score=23.53 Aligned_cols=43 Identities=7% Similarity=-0.066 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 94 ~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
..+.|.++++.++++ ++++|+..+..-. ...+.++++.+++.+
T Consensus 213 s~~~l~~l~~~ik~~--~v~~if~e~~~~~--~~~~~la~~~g~~v~ 255 (286)
T 3gi1_A 213 SPRQLKEIQDFVKEY--NVKTIFAEDNVNP--KIAHAIAKSTGAKVK 255 (286)
T ss_dssp CHHHHHHHHHHHHHT--TCCEEEECTTSCT--HHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCCCh--HHHHHHHHHhCCeEE
Confidence 366788999999998 7899999865433 345678888998876
No 231
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.97 E-value=77 Score=24.51 Aligned_cols=42 Identities=7% Similarity=-0.023 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.++++ ++++|+..+..-. ...+.++++.+++.+
T Consensus 212 ~~~l~~l~~~ik~~--~v~~if~e~~~~~--~~~~~ia~~~g~~v~ 253 (284)
T 3cx3_A 212 PRQLTEIQEFVKTY--KVKTIFTESNASS--KVAETLVKSTGVGLK 253 (284)
T ss_dssp SHHHHHHHHHHHHT--TCCCEEECSSSCC--HHHHHHHSSSSCCEE
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCCc--HHHHHHHHHcCCeEE
Confidence 45688899999998 7889999865533 345677888898876
No 232
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=24.51 E-value=1.6e+02 Score=20.39 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCCEEEEEcCCC
Q 030474 101 MVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 101 ii~~~r~~~p~~~vil~tp~p 121 (177)
+++.+++..|.++||+++...
T Consensus 69 l~~~~~~~~~~~~ii~lt~~~ 89 (196)
T 1qo0_D 69 IAALLAAGTPRTTLVALVEYE 89 (196)
T ss_dssp HHHHHHHSCTTCEEEEEECCC
T ss_pred HHHHHhccCCCCCEEEEEcCC
Confidence 455555554688999988653
No 233
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=24.44 E-value=60 Score=23.67 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=44.6
Q ss_pred cccCCcch---hhHHHhhcccCCCCCCCCCcEEEEE-eccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEE
Q 030474 39 RGYGGYNT---RWALFLLHHIFPLDNSNPPVATTIF-FGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLV 114 (177)
Q Consensus 39 ~G~~G~ts---~~~l~~l~~~~~~~~~~~pd~Vvi~-~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~v 114 (177)
.|.||-.. .....++++++. ...+|+|+.- -|+|+.. ....+..++|..|-..+..++++.+|
T Consensus 38 ~~asG~~~~~I~r~~~~f~~Lv~---~~n~divFrDee~tg~~~----------~Md~rl~d~L~~L~~~v~~~~~g~pi 104 (170)
T 3n1g_B 38 LGASGPAEGRVARGSERFRDLVP---NYNPDIIFKDEENSGADR----------LMTERCKERVNALAIAVMNMWPGVRL 104 (170)
T ss_dssp TTTTCCCCCCCCTTSHHHHTCEE---CCCTTEEECCTTSSSGGG----------EECHHHHHHHHHHHHHHHHHSTTCCE
T ss_pred ccCcCCccccccCCCHhhhhccc---cCCCCcEEecccccCCcc----------cCCHHHHHHHHHHHHHHhcccCCCcE
Confidence 46666432 222356666665 4688988883 3466554 24557888999998898888777788
Q ss_pred EEEc
Q 030474 115 VLIT 118 (177)
Q Consensus 115 il~t 118 (177)
.+++
T Consensus 105 ~V~S 108 (170)
T 3n1g_B 105 RVTE 108 (170)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8877
No 234
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=24.06 E-value=2.7e+02 Score=24.95 Aligned_cols=67 Identities=7% Similarity=-0.152 Sum_probs=40.2
Q ss_pred ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccCCCCCCccCCH-HHHHHHHHHHHHHHHHhCC
Q 030474 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPV-EEYGDNLKIMVQHLKRLSP 110 (177)
Q Consensus 32 ~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~-~~~~~nl~~ii~~~r~~~p 110 (177)
.+++|++.|.. -+...+.+. .. ..+||+|.++.= .+. +....+++++++.++++..
T Consensus 633 aGFEVIDLGvd-VPpEeIVeA---A~----EedADVVGLSsL---------------LTt~dihL~~MkevIelLrE~Gl 689 (763)
T 3kp1_A 633 YGVEVHYLGTS-VPVEKLVDA---AI----ELKADAILASTI---------------ISHDDIHYKNMKRIHELAVEKGI 689 (763)
T ss_dssp GTCEEEECCSS-BCHHHHHHH---HH----HTTCSEEEEECC---------------CCGGGHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCC-CCHHHHHHH---HH----HcCCCEEEEecc---------------ccCchhhHHHHHHHHHHHHhcCC
Confidence 47888888876 233333332 22 267899888521 111 2257789999999999865
Q ss_pred C--CEEEEEcCCC
Q 030474 111 I--MLVVLITPPP 121 (177)
Q Consensus 111 ~--~~vil~tp~p 121 (177)
. ++|++=+.++
T Consensus 690 rDkIkVIVGGa~~ 702 (763)
T 3kp1_A 690 RDKIMIGCGGTQV 702 (763)
T ss_dssp TTTSEEEEECTTC
T ss_pred CCCCEEEEECCCC
Confidence 3 4455544443
No 235
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=23.99 E-value=1.7e+02 Score=19.59 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEcC--CCCChhHHHHHHHHhCCCcee
Q 030474 98 LKIMVQHLKRLSPIMLVVLITP--PPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 98 l~~ii~~~r~~~p~~~vil~tp--~p~~~~~~~~~~a~~~~vp~i 140 (177)
+.+.++.++.. .++++++.. +|..-.......+++++|||+
T Consensus 25 ~~~v~kai~~g--kakLViiA~D~~~~~~~~~l~~lc~~~~VP~~ 67 (121)
T 2lbw_A 25 VKEVVKALRKG--EKGLVVIAGDIWPADVISHIPVLCEDHSVPYI 67 (121)
T ss_dssp HHHHHHHHHHS--CCCEEEECTTCSCTTHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHcC--CceEEEEeCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 44555666655 678888764 343323345567888999997
No 236
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=23.98 E-value=38 Score=16.77 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 030474 91 VEEYGDNLKIMVQHLKRLS 109 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~~ 109 (177)
.+++++.+..+++++++..
T Consensus 3 ~e~mr~Q~~~lveKvq~a~ 21 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAAV 21 (26)
T ss_dssp HHHTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999874
No 237
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Probab=23.95 E-value=1.3e+02 Score=21.54 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 88 HVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 88 ~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..+.+++.+.+..+++.++++.+..++++++
T Consensus 95 ~~~~~~~~~d~~~~i~~l~~~~~~~~i~l~G 125 (270)
T 3pfb_A 95 NMTVLNEIEDANAILNYVKTDPHVRNIYLVG 125 (270)
T ss_dssp GCCHHHHHHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred ccCHHHHHHhHHHHHHHHHhCcCCCeEEEEE
Confidence 3567888888999999988764445677765
No 238
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.81 E-value=72 Score=20.67 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHHhC--CCCEEEEEcCCCC
Q 030474 100 IMVQHLKRLS--PIMLVVLITPPPV 122 (177)
Q Consensus 100 ~ii~~~r~~~--p~~~vil~tp~p~ 122 (177)
++++.+++.. |.++||+++...-
T Consensus 79 ~~~~~l~~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 79 EVLQEIKQDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp HHHHHHTTSTTGGGSCEEEEESCCC
T ss_pred HHHHHHHhCcccCCCeEEEEeCCCC
Confidence 4566677654 6788999886543
No 239
>2czq_A Cutinase-like protein; alpha/beta hydrolase fold, hydrolase; HET: CIT; 1.05A {Cryptococcus SP}
Probab=23.70 E-value=83 Score=23.37 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
.+=..++.++|+...++.|+.+++|++-+
T Consensus 57 ~~G~~~~~~~i~~~~~~CP~tkivl~GYS 85 (205)
T 2czq_A 57 AAGTADIIRRINSGLAANPNVCYILQGYS 85 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEEeeC
Confidence 66678888888998899999999999843
No 240
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=23.63 E-value=87 Score=28.86 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 030474 93 EYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (177)
Q Consensus 93 ~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~ 123 (177)
-+.+-++..++..|+..|+++|=+|+=.+-+
T Consensus 832 ~v~~li~~a~~~gr~~~~~i~vgICGE~~gd 862 (913)
T 2x0s_A 832 GIGELVRIAVTKGRRVKPMLKMGICGEHGGD 862 (913)
T ss_dssp THHHHHHHHHHHHHHHSTTCEEEECSGGGGC
T ss_pred HHHHHHHHHHHHhhhcCCCCeEEEeCCcccC
Confidence 4455555556666777778889899855554
No 241
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.51 E-value=2e+02 Score=21.05 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHh--------CCCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 91 VEEYGDNLKIMVQHLKRL--------SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~--------~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
.++..+.++++++.++.. .+...+++.+|+-..+....+.++...+.|++.
T Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 17 CDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp CHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence 455667777777765431 123468999999999988777777777777763
No 242
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=23.46 E-value=1.7e+02 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 91 VEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
..+-..-+.++++.+++..|++-+|.+|-|
T Consensus 125 ~~rni~i~~~i~~~i~~~~P~A~ii~~TNP 154 (480)
T 1obb_A 125 NYNQLKYFVDIARKIEKLSPKAWYLQAANP 154 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCEEEECSSC
T ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 455667889999999999999977766643
No 243
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*
Probab=23.39 E-value=2.5e+02 Score=22.14 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=34.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
..|.++.+.++ |-...... .....+.+.+.+.++++++.+|+..|+. +|+++
T Consensus 177 ~~p~Vi~~el~-NEP~~~~~--~~~~~~~~~~~~~~~~~~~~IR~~dp~~-~I~v~ 228 (359)
T 4hty_A 177 GINSVAFYEIF-NEPTVFNG--RLGIATWAEWKAINEEAITIIQAHNPKA-IALVA 228 (359)
T ss_dssp TCTTEEEEESC-SEECCGGG--TTCCCCHHHHHHHHHHHHHHHHHHCTTC-EEEEE
T ss_pred CCCcEEEEEec-cCCCCCCC--CcCCCCHHHHHHHHHHHHHHHHHhCCCc-EEEEc
Confidence 46777777765 55432110 0012467889999999999999998865 44444
No 244
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=23.07 E-value=77 Score=29.13 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..+.+-++..++..|+..|+.+|=+|+=.+-++
T Consensus 811 paV~~li~~~~~~~~~~~~g~~vgiCGe~~gdP 843 (876)
T 1vbg_A 811 RGVGELVKFATERGRKARPNLKVGICGEHGGEP 843 (876)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCEEEEESGGGGSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEcCCcCCCH
Confidence 457788888888998887788999997555443
No 245
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=23.05 E-value=2.4e+02 Score=22.12 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++.+|+-- .....++.....+... .-++++++.+.+..|++.+|++|-|
T Consensus 71 ~~aD~Vi~a~g~p~---k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 128 (322)
T 1t2d_A 71 AGADVVIVTAGFTK---APGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP 128 (322)
T ss_dssp TTCSEEEECCSCSS---CTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred CCCCEEEEeCCCCC---CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46799999998521 1000000000122333 3477788888888899988877643
No 246
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=22.95 E-value=1.1e+02 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.++++ ++++|++.+..-. ...+.++++.+++.+
T Consensus 218 ~~~l~~l~~~ik~~--~v~~if~e~~~~~--~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 218 PDQISSLIEKLKVI--KPSALFVESSVDR--RPMETVSKDSGIPIY 259 (294)
T ss_dssp HHHHHHHHHHHHHS--CCSCEEEETTSCS--HHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCCc--HHHHHHHHHhCCcEE
Confidence 56788999999998 7888998765432 346678888998876
No 247
>3qpa_A Cutinase; alpha-beta hydrolase fold, esterase, hydrolase, mono- phosphorylated serine residue, secreted; HET: MIR; 0.85A {Nectria haematococca} PDB: 3qpc_A* 1cex_A 1oxm_A* 1cui_A 1cus_A 2cut_A 1cuj_A 1cuy_A 1xzl_A* 1xzk_A* 1xzm_A* 1cuh_A 1cuu_A 3esc_A* 1cua_A* 3esa_A* 3esb_A* 3ef3_A* 3esd_A* 1cux_A ...
Probab=22.94 E-value=97 Score=22.96 Aligned_cols=31 Identities=6% Similarity=-0.089 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
+..+=...+..+|+...++.|+.+|+|++-+
T Consensus 75 S~~~G~~~~~~~i~~~~~~CP~tkiVL~GYS 105 (197)
T 3qpa_A 75 TSSAAIREMLGLFQQANTKCPDATLIAGGYX 105 (197)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTCEEEEEEET
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 4556678888899999999999999999843
No 248
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=22.78 E-value=1.2e+02 Score=25.55 Aligned_cols=61 Identities=15% Similarity=0.005 Sum_probs=32.7
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHcccCcEEEcccCC-cchhhHHHhhcccCCCCCCCCCcEEEEEecccc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGG-YNTRWALFLLHHIFPLDNSNPPVATTIFFGAND 76 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~~~~~v~N~G~~G-~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND 76 (177)
.++++.||.-... .-...+... ..+++|.-.+.-| ..+....+.+++ -+|.+++|+.|.+.
T Consensus 196 ~~iLftGD~~~~~-----~~e~~l~~~-~~~~DvLkv~HHG~S~~s~s~~fl~~-------v~P~~aiiS~g~~n 257 (547)
T 2bib_A 196 KKIYLGGDLDNVH-----GAEDKYGPL-IGKVDLMKFNHHHDTNKSNTKDFIKN-------LSPSLIVQTSDSLP 257 (547)
T ss_dssp EEEEECTTCCSTT-----SHHHHHHHH-HCCCSEEECTTTTBCSSSSCHHHHHH-------HCCSEEEESBSSCS
T ss_pred EEEEecCCccchh-----hhhhhhccc-ccceeEEEeccccCcccCChHHHHHh-------cCCcEEEEcCCccc
Confidence 3678888875531 111233222 2367888777665 322222222222 34689999999863
No 249
>3qpd_A Cutinase 1; alpha-beta hydrolase fold, esterase, hydrolase, mono- phosphorylated serine residue, secreted, phosphorylated Ser residue; HET: SEP; 1.57A {Aspergillus oryzae} PDB: 3gbs_A
Probab=22.72 E-value=99 Score=22.67 Aligned_cols=30 Identities=7% Similarity=-0.115 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
+.+.-...+..+++...++.|+.+++|++-
T Consensus 71 s~~~g~~~~~~~i~~~~~~CP~tkivl~GY 100 (187)
T 3qpd_A 71 TSQAAIAEAQGLFEQAVSKCPDTQIVAGGY 100 (187)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred chhHHHHHHHHHHHHHHHhCCCCcEEEEee
Confidence 345567788889999999999999999983
No 250
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A 1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Probab=22.70 E-value=1.1e+02 Score=23.36 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEc
Q 030474 92 EEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (177)
Q Consensus 92 ~~~~~nl~~ii~~~r~~~p~~~vil~t 118 (177)
+.+.+.+.+.++.+++++|+.++++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~i~l~G 144 (269)
T 1tib_A 118 RSVADTLRQKVEDAVREHPDYRVVFTG 144 (269)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCceEEEec
Confidence 456777888888888888887776665
No 251
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=22.65 E-value=1.5e+02 Score=24.21 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=26.8
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCh
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~p~~~ 124 (177)
..|+|++++++...... ..+..-+.+-++++...++...++.-||..+..|...
T Consensus 76 ~aDvviiaVptp~~~~~-------~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 76 DSDVSFICVGTPSKKNG-------DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp TCSEEEECCCCCBCTTS-------SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred cCCEEEEEcCCCcccCC-------CcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 57999999987542211 1243334444555554444311134455444444433
No 252
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=22.59 E-value=1.6e+02 Score=22.83 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|+++.|..-.... .+..-..+-..-++++++.+.+..|++.+++++-
T Consensus 66 ~~aDvVIi~~~~~~~~g~-----~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 66 ADAQVVILTAGANQKPGE-----SRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp TTCSEEEECC-----------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCC-----cHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 467899998876321100 0011223334456777777777778888777653
No 253
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.57 E-value=72 Score=19.87 Aligned_cols=23 Identities=4% Similarity=0.180 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCC
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPV 122 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~ 122 (177)
++++.+++..|..+||+++...-
T Consensus 61 ~~~~~l~~~~~~~~ii~~s~~~~ 83 (121)
T 2pl1_A 61 SLIRRWRSNDVSLPILVLTARES 83 (121)
T ss_dssp HHHHHHHHTTCCSCEEEEESCCC
T ss_pred HHHHHHHhcCCCCCEEEEecCCC
Confidence 35667777777889999886543
No 254
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=22.51 E-value=78 Score=23.58 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=25.3
Q ss_pred CCCEE-EEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 110 PIMLV-VLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 110 p~~~v-il~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+.++| ++++||-.......+.++++.+++.|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 35565 457899899988888888988988883
No 255
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=22.51 E-value=2.4e+02 Score=20.90 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHh---------CCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 91 VEEYGDNLKIMVQHLKRL---------SPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~---------~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.++..+.+.+.+...... .+...+++.+||-..+....+.++...+.+++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345555666655543211 33456899999999998777777777776666
No 256
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=22.39 E-value=1.4e+02 Score=20.00 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPP 121 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p 121 (177)
...|..+.+.++++ +.+++++++.+
T Consensus 82 l~~L~~~~~~~~~~--g~~l~l~~~~~ 106 (143)
T 3llo_A 82 VKTLAGIVKEYGDV--GIYVYLAGCSA 106 (143)
T ss_dssp HHHHHHHHHHHHTT--TCEEEEESCCH
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 56788888889988 78999998764
No 257
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=22.08 E-value=1.1e+02 Score=23.85 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCC-HHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVP-VEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~-~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++..|+.--. +..+.+ ..+-..-++++++.+.+..|++.+++.|-|
T Consensus 69 ~~aD~Vi~a~g~p~~~------g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP 121 (309)
T 1ur5_A 69 ANSDVIVVTSGAPRKP------GMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 121 (309)
T ss_dssp TTCSEEEECCCC--------------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSS
T ss_pred CCCCEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCc
Confidence 4679999999873211 100111 122234466778888888888887776543
No 258
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=22.04 E-value=2.8e+02 Score=21.48 Aligned_cols=13 Identities=0% Similarity=-0.253 Sum_probs=9.2
Q ss_pred CCCcEEEEEeccc
Q 030474 63 NPPVATTIFFGAN 75 (177)
Q Consensus 63 ~~pd~Vvi~~G~N 75 (177)
...|+|++++...
T Consensus 86 ~~aDvVi~avp~~ 98 (317)
T 4ezb_A 86 ACADVVLSLVVGA 98 (317)
T ss_dssp GGCSEEEECCCGG
T ss_pred hcCCEEEEecCCH
Confidence 4579999876643
No 259
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=21.77 E-value=2.8e+02 Score=21.35 Aligned_cols=35 Identities=6% Similarity=-0.011 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHHHhCCCceeecccC
Q 030474 111 IMLVVLITPPPVDEDGRMEYAKYVNSSPYINCFLG 145 (177)
Q Consensus 111 ~~~vil~tp~p~~~~~~~~~~a~~~~vp~id~~l~ 145 (177)
+.-+|-++..............++.++.|+|.+.-
T Consensus 90 ~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVs 124 (297)
T 4gbj_A 90 DGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIF 124 (297)
T ss_dssp TCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred CeEEEECCCCChHHHHHHHHHHHhcCCceecCCcC
Confidence 34344455433333333444556678899986653
No 260
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=21.57 E-value=2.4e+02 Score=22.08 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 110 PIMLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 110 p~~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
+...|++.+||...+....+.+++..+.||+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45679999999999999888999988999883
No 261
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.49 E-value=82 Score=15.13 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 030474 90 PVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 90 ~~~~~~~nl~~ii~~~r~~ 108 (177)
..++.++.+.+|.+.+++.
T Consensus 6 ~~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 6 LVEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4688999999999999864
No 262
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=21.45 E-value=1.7e+02 Score=23.09 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHH---HHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~---~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
...|+|++.+|+---..... .+. ...+.. ..-++++++.+.+..|++.+|+.|-|
T Consensus 77 ~~aDiVi~a~g~p~~~g~~~-~~~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP 134 (331)
T 1pzg_A 77 TGADCVIVTAGLTKVPGKPD-SEW--SRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP 134 (331)
T ss_dssp TTCSEEEECCSCSSCTTCCG-GGC--CGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEccCCCCCCCccc-CCC--CHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence 46799999998632110000 000 122223 34477888888888888887776644
No 263
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=21.45 E-value=1.9e+02 Score=22.78 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=30.4
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHH---HHHHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~---~nl~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|++.+|+--- . + ....+... +-++++++.+.+..|++.+|++|-
T Consensus 81 ~~aD~VI~avg~p~k--~----g--~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 81 QNSDVVIITAGVPRK--P----N--MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp TTCSEEEECCSCCCC--T----T--CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEcCCCCCC--C----C--CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 468999999985321 0 1 01122233 346777788888788888777654
No 264
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=21.44 E-value=1.2e+02 Score=23.52 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=29.4
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHH---HHHHHHHHHHhCCCCEEEEEcC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~n---l~~ii~~~r~~~p~~~vil~tp 119 (177)
...|+|+++.+...... +. ++ ....+....| ++++++.+.+..|++.+++++-
T Consensus 68 ~~aDvViiav~~~~~~~-~~-~g--~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 123 (309)
T 1hyh_A 68 ADADVVISTLGNIKLQQ-DN-PT--GDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN 123 (309)
T ss_dssp TTCSEEEECCSCGGGTC-----------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCEEEEecCCcccCC-CC-CC--CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46799999998754200 00 00 0112223333 6777778877778887776553
No 265
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=21.43 E-value=1.4e+02 Score=24.08 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=25.7
Q ss_pred CCCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Q 030474 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (177)
Q Consensus 63 ~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil~tp~ 120 (177)
.+||+|++-+..-|. +- .++++.+++..|.++||++|..
T Consensus 43 ~~~DlvllD~~mp~~------------dG-------~ell~~lr~~~~~~pvIvlT~~ 81 (387)
T 1ny5_A 43 KHFNVVLLDLLLPDV------------NG-------LEILKWIKERSPETEVIVITGH 81 (387)
T ss_dssp SCCSEEEEESBCSSS------------BH-------HHHHHHHHHHCTTSEEEEEEET
T ss_pred CCCCEEEEeCCCCCC------------CH-------HHHHHHHHhhCCCCcEEEEeCC
Confidence 468999994443221 11 2456677777888999999854
No 266
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=21.34 E-value=1.3e+02 Score=20.84 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCh------hHHHHHHHHhCCCcee
Q 030474 100 IMVQHLKRLSPIMLVVLITPPPVDE------DGRMEYAKYVNSSPYI 140 (177)
Q Consensus 100 ~ii~~~r~~~p~~~vil~tp~p~~~------~~~~~~~a~~~~vp~i 140 (177)
+|++.+++. .+..|+-+|.|... ...-.+.|..++||++
T Consensus 65 ~I~d~I~~g--eIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 109 (134)
T 2xw6_A 65 QMGARVAEG--RILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLA 109 (134)
T ss_dssp HHHHHHHTT--CEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEE
T ss_pred hHHHHHHCC--CccEEEEccCcccCCCccchHHHHHHHHHHcCCCeE
Confidence 588888877 78889988886532 1345677888999998
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=21.07 E-value=1.2e+02 Score=20.93 Aligned_cols=30 Identities=7% Similarity=-0.095 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCChhHHHHHHHHhCCCceee
Q 030474 112 MLVVLITPPPVDEDGRMEYAKYVNSSPYIN 141 (177)
Q Consensus 112 ~~vil~tp~p~~~~~~~~~~a~~~~vp~id 141 (177)
..|++++|+-.......+.+++..+.+++|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 468899999999998888899888999995
No 268
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=20.94 E-value=1e+02 Score=26.29 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=30.8
Q ss_pred EEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 030474 69 TIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVL 116 (177)
Q Consensus 69 vi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~vil 116 (177)
-|++|-+|.... .+.+++..-.+.++..+++. +.++++
T Consensus 259 gImvgrgDLgve--------lg~~~v~~aqk~ii~aaraa--Gkpvi~ 296 (500)
T 1a3w_A 259 GVMVARGDLGIE--------IPAPEVLAVQKKLIAKSNLA--GKPVIC 296 (500)
T ss_dssp EEEECHHHHHHH--------TTGGGHHHHHHHHHHHHHHH--TCCEEE
T ss_pred EEEECchHhhhh--------cCcHHHHHHHHHHHHHHHhc--CCCEEE
Confidence 678899998865 45778888899999999999 456665
No 269
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=20.90 E-value=80 Score=19.60 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 030474 89 VPVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~ 108 (177)
++..+++.|+.++++++.+.
T Consensus 7 v~~~e~r~~l~~~~~~v~~~ 26 (86)
T 2a6q_A 7 ISYSEARQNLSATMMKAVED 26 (86)
T ss_dssp EEHHHHHHTHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999764
No 270
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.90 E-value=1.8e+02 Score=22.36 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChh-HHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDED-GRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~-~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.++++ ++++|++.+..-... ......+++.+++.+
T Consensus 198 ~~~l~~l~~~ik~~--~v~~if~e~~~~~~~~~~l~~~a~~~g~~v~ 242 (282)
T 3mfq_A 198 NSDMIETVNLIIDH--NIKAIFTESTTNPERMKKLQEAVKAKGGQVE 242 (282)
T ss_dssp HHHHHHHHHHHHHH--TCCEEECBTTSCTHHHHHHHHHHHTTSCCCE
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHHHhcCCceE
Confidence 56788999999999 789999876443321 233445667787654
No 271
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.89 E-value=2.6e+02 Score=22.82 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCEEEEEcCCCCChhHHHHHHHHhCC--Ccee
Q 030474 91 VEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDEDGRMEYAKYVNS--SPYI 140 (177)
Q Consensus 91 ~~~~~~nl~~ii~~~r~~~-p~~~vil~tp~p~~~~~~~~~~a~~~~--vp~i 140 (177)
.++..+.+..+++.++... |...+++.+||...+....+.++.+.+ ++|+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~ 94 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFC 94 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence 4566777777888777642 335699999999999888777777666 7776
No 272
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=20.83 E-value=81 Score=19.92 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 030474 89 VPVEEYGDNLKIMVQHLKRL 108 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~ 108 (177)
++..+.+.|+.++++++...
T Consensus 3 i~~sear~~l~~~l~~v~~~ 22 (91)
T 3d55_A 3 ISASEARQRLFPLIEQVNTD 22 (91)
T ss_dssp EEHHHHHHTHHHHHHHHHHH
T ss_pred ecHHHHHHhHHHHHHHHHhh
Confidence 56789999999999999875
No 273
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=20.70 E-value=1.6e+02 Score=22.61 Aligned_cols=47 Identities=13% Similarity=-0.081 Sum_probs=31.7
Q ss_pred CCcEEEEEeccccccccCCCCCCccCCHHHHHHHHHHHHHHHHHhCCCCEE
Q 030474 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLV 114 (177)
Q Consensus 64 ~pd~Vvi~~G~ND~~~~~~~~~~~~~~~~~~~~nl~~ii~~~r~~~p~~~v 114 (177)
.|.+..+++|+||....-..... .....+..-+..++..+++. +..+
T Consensus 143 ~~~vd~l~iG~~DL~~~lg~~~~--~~~~~~~~a~~~iv~aa~a~--G~~~ 189 (284)
T 1sgj_A 143 VPEVAWAYFGAEDYTTDLGGKRT--PGGLEVLYARSQVALAARLT--GVAA 189 (284)
T ss_dssp STTEEEEEECHHHHHHHHTCCCC--SSCGGGHHHHHHHHHHHHHH--TCEE
T ss_pred CCCCcEEEECHHHHHHHhCCCCC--CChHHHHHHHHHHHHHHHHc--CCCe
Confidence 46788999999999865321111 11134778888899999988 4444
No 274
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=20.69 E-value=2.3e+02 Score=21.65 Aligned_cols=12 Identities=17% Similarity=-0.067 Sum_probs=8.8
Q ss_pred CCCcEEEEEecc
Q 030474 63 NPPVATTIFFGA 74 (177)
Q Consensus 63 ~~pd~Vvi~~G~ 74 (177)
...|+|++++..
T Consensus 63 ~~aDvvi~~vp~ 74 (303)
T 3g0o_A 63 GVVDALVILVVN 74 (303)
T ss_dssp TTCSEEEECCSS
T ss_pred hcCCEEEEECCC
Confidence 467999997653
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=20.56 E-value=2.9e+02 Score=21.07 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhC----CCCEEEEEcCCCCChhHHHHHHHHhC--CCceee
Q 030474 89 VPVEEYGDNLKIMVQHLKRLS----PIMLVVLITPPPVDEDGRMEYAKYVN--SSPYIN 141 (177)
Q Consensus 89 ~~~~~~~~nl~~ii~~~r~~~----p~~~vil~tp~p~~~~~~~~~~a~~~--~vp~id 141 (177)
.+.+++..-+.+++..+.... ...-|++++|+-.......+.++++. +..+|+
T Consensus 7 ~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 7 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred CCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 678999999999998887542 12347778888899988887877765 667774
No 276
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.49 E-value=1.5e+02 Score=22.91 Aligned_cols=42 Identities=12% Similarity=-0.008 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.|.++++.+|+. ++++|+..+..-.. ..+.++++.+++.+
T Consensus 223 ~~~l~~l~~~ik~~--~v~~If~e~~~~~~--~~~~ia~~~g~~v~ 264 (291)
T 1pq4_A 223 AQELKQLIDTAKEN--NLTMVFGETQFSTK--SSEAIAAEIGAGVE 264 (291)
T ss_dssp HHHHHHHHHHHHTT--TCCEEEEETTSCCH--HHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCChH--HHHHHHHHcCCeEE
Confidence 56688999999998 78999987654333 44567888887765
No 277
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.46 E-value=1.2e+02 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCCCChhHHHHHHHHhCCCcee
Q 030474 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKYVNSSPYI 140 (177)
Q Consensus 95 ~~nl~~ii~~~r~~~p~~~vil~tp~p~~~~~~~~~~a~~~~vp~i 140 (177)
.+.+.++++.++++ ++++|+..+..-. ...+.++++.+++.+
T Consensus 209 ~~~l~~l~~~ik~~--~v~~if~e~~~~~--~~~~~ia~~~g~~v~ 250 (284)
T 2prs_A 209 AQRLHEIRTQLVEQ--KATCVFAEPQFRP--AVVESVARGTSVRMG 250 (284)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEECTTSCS--HHHHHHTTTSCCEEE
T ss_pred HHHHHHHHHHHHHc--CCCEEEEeCCCCh--HHHHHHHHHcCCeEE
Confidence 55688899999998 7899999865433 345677888898876
No 278
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.39 E-value=1.9e+02 Score=18.81 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=27.3
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecc
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ 74 (177)
.+|+++.|+-.. ...+...+. .++.+.-. + +...+++.+.+ .+||+|++-+..
T Consensus 15 ~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~--~--~~~~al~~~~~-------~~~dlvl~D~~m 68 (143)
T 3m6m_D 15 MRMLVADDHEAN--------RMVLQRLLEKAGHKVLCV--N--GAEQVLDAMAE-------EDYDAVIVDLHM 68 (143)
T ss_dssp CEEEEECSSHHH--------HHHHHHHHHC--CEEEEE--S--SHHHHHHHHHH-------SCCSEEEEESCC
T ss_pred ceEEEEeCCHHH--------HHHHHHHHHHcCCeEEEe--C--CHHHHHHHHhc-------CCCCEEEEeCCC
Confidence 478888887553 234555552 23444321 1 22334443322 568999994443
No 279
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=20.39 E-value=3.4e+02 Score=21.79 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=42.8
Q ss_pred ceEEEEecccCccccCCCChHHHHHHHHc-ccCcEEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEeccccccccC
Q 030474 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (177)
Q Consensus 3 ~~I~~~GDSit~gg~~~~~w~~~l~~~l~-~~~~v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~~~~ 81 (177)
++|+++-|+-.. ...+...+. .++.|. ...+| ..+++.+.+ .+||+|++ |...++
T Consensus 2 ~~iLivdD~~~~--------~~~l~~~L~~~~~~v~-~a~~~---~~al~~~~~-------~~~dlvll-----D~~mp~ 57 (459)
T 1w25_A 2 ARILVVDDIEAN--------VRLLEAKLTAEYYEVS-TAMDG---PTALAMAAR-------DLPDIILL-----DVMMPG 57 (459)
T ss_dssp CEEEEECSSTTH--------HHHHHHHHHHTTCEEE-EESSH---HHHHHHHHH-------HCCSEEEE-----ESCCSS
T ss_pred CeEEEEeCCHHH--------HHHHHHHHHHcCCEEE-EECCH---HHHHHHHhc-------CCCCEEEE-----cCCCCC
Confidence 578999997663 234554442 234443 22222 333433322 45899998 554431
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHh--CCCCEEEEEcCC
Q 030474 82 RTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPP 120 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~nl~~ii~~~r~~--~p~~~vil~tp~ 120 (177)
.+- -++++.+++. .+.++||++|..
T Consensus 58 -------~~G-------~~~~~~l~~~~~~~~~pii~lt~~ 84 (459)
T 1w25_A 58 -------MDG-------FTVCRKLKDDPTTRHIPVVLITAL 84 (459)
T ss_dssp -------SCH-------HHHHHHHHHSTTTTTSCEEEEECS
T ss_pred -------CCH-------HHHHHHHhcCcccCCCCEEEEECC
Confidence 111 1345556653 356789988854
No 280
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=20.32 E-value=97 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=25.4
Q ss_pred EEEcccCCcchhhHHHhhcccCCCCCCCCCcEEEEEecccccc
Q 030474 36 VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (177)
Q Consensus 36 v~N~G~~G~ts~~~l~~l~~~~~~~~~~~pd~Vvi~~G~ND~~ 78 (177)
++|...+|.......+|+... . .+||.+.+..|+....
T Consensus 84 ii~~TTg~~~~~~~eeR~~~~-~----~~Pe~asl~~gs~Nf~ 121 (282)
T 2y7e_A 84 IIQISTGGAVGESFDKRLAPL-A----LKPEMATLNAGTLNFG 121 (282)
T ss_dssp EEEECSSCSTTCCHHHHHGGG-G----GCCSEEEEECCCEEET
T ss_pred EEEeCCCCCCCCCHHHHHHHh-h----cCCCEEEecccccccc
Confidence 667666655433455666655 4 5899999999986643
Done!