BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030476
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS L+LH TGR RVVTA +LK+ LF Y+GY+ AALVLGGVD TGPHL++IYPHG
Sbjct: 58 LISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE K++ + ++E LV +AI +GIFNDLGSGSN+D+CV
Sbjct: 118 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 170
I+K ++LR + +PN + + T VL KITPL +EV+E
Sbjct: 178 ISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPL--EIEVLE 225
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS L+LH TGR RVVTA +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHG
Sbjct: 58 LISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE K++ + ++E +LV +AI +GIFNDLGSGSN+D+CV
Sbjct: 118 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 177
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 170
I+K ++LR +PN + + T VL K+TPL +EV+E
Sbjct: 178 ISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPL--EIEVLE 225
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 173 bits (438), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HG
Sbjct: 58 LIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD + ++GSGSLAAMA+ ES +K+ LTK+E I+L DAI +GI+NDLGSGSNVDVCV
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177
Query: 121 ITKGHK-EYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 156
+ G EYLRN+L PN R K Y FP+ T +L
Sbjct: 178 MEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGTTAVL 213
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 173 bits (438), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HG
Sbjct: 87 LIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHG 146
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD + ++GSGSLAAMA+ ES +K+ LTK+E I+L DAI +GI+NDLGSGSNVDVCV
Sbjct: 147 STDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 206
Query: 121 ITKGHK-EYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 156
+ G EYLRN+L PN R K Y FP+ T +L
Sbjct: 207 MEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 242
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HG
Sbjct: 58 LIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD + ++GSGSLAAMA+ ES +K+ LTK+E I+L DAI +GI+NDLGSGSNVDVCV
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177
Query: 121 ITKGHK-EYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 156
+ G EYLRN+L PN R K Y FP+ T +L
Sbjct: 178 MEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 213
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M +S+++LH TGRE RV T +L++ LF YQG+V A+LV+GGVD GP L+ ++PHG
Sbjct: 58 MAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S LPF +GSG AA+A+ E +++ +T + +L+V+AI +GI +DLGSG NVD CV
Sbjct: 118 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACV 177
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKG-YSF-PKKTEVLLTKITPL 162
IT G + R L P V G Y F P T VL ++ PL
Sbjct: 178 ITAGGAKLQRA--LSTPTEPVQRAGRYRFAPGTTPVLTREVRPL 219
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPH 59
+ ++L+L+R R + + A+ L ++ N Y+ L++GG+D T PH+ +I
Sbjct: 67 MKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAA 124
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI + D SG +DV
Sbjct: 125 GGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVA 184
Query: 120 VITK 123
VIT+
Sbjct: 185 VITR 188
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPH 59
+ ++L+L+R R + + A+ L ++ N Y+ L++GG+D T PH+ +I
Sbjct: 67 MKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAA 124
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI + D SG +DV
Sbjct: 125 GGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVA 184
Query: 120 VITK 123
VIT+
Sbjct: 185 VITR 188
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 4 SQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPHGS 61
++L+L+R R + + A+ L ++ N Y+ L++GG+D T PH+ +I G
Sbjct: 61 AELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGG 118
Query: 62 TDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121
+ +A+ GSGS + ES+Y E +T DEG+ LV+ AI + D SG +DV VI
Sbjct: 119 SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVI 178
Query: 122 TK 123
T+
Sbjct: 179 TR 180
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 5 QLQLHRYHTGRESR-VVTALTLLKKHLFNYQGYVQ--AALVLGGVDCTGPHLHTIYP-HG 60
+++ + Y RE + V A+ L +L N Y L++GG+D G +++I P G
Sbjct: 60 KIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGG 119
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
+ + GSGSL A + E ++ + DE ++L V AI S + D SG +DV
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179
Query: 121 ITK 123
IT+
Sbjct: 180 ITE 182
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 5 QLQLHRYHTGRESRVVTALTLLKKHLFNY-QGYVQ--------AALVLGGVDCTGPHLHT 55
+ Q++R G E ++ +L K + + Q Y Q +L++ G+D L
Sbjct: 99 EAQIYRLTYGEE----ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFE 154
Query: 56 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN 115
P G+ +GSG M + E +Y++ +T DEG++L + A+ N+ N
Sbjct: 155 TDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKA--NEDIKPEN 212
Query: 116 VDVCVIT 122
VDVC+IT
Sbjct: 213 VDVCIIT 219
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDC-TGPHLHTIYP 58
++ ++ +L++ TGR + TLL L + + + +++GG D G L ++ P
Sbjct: 59 LLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDP 118
Query: 59 HGS-TDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVD 117
G + F GSGS A + E+ Y ++ +EGI+L ++A+ S + D SG+ +
Sbjct: 119 LGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGIS 178
Query: 118 VCVITK 123
+ VITK
Sbjct: 179 LAVITK 184
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT-GPHLHTIYPHG 60
V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G
Sbjct: 59 VTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGG 118
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
FA GSGS ++ Y+EG+TKDE +Q +A+ + D SG + +
Sbjct: 119 MMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 121 ITKGHKE 127
I + E
Sbjct: 179 IQESGVE 185
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT-GPHLHTIYPHG 60
V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G
Sbjct: 59 VTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGG 118
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
FA GSGS ++ Y+EG+TK+E +Q +A+ + D SG + +
Sbjct: 119 MMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 121 ITKGHKE 127
I + E
Sbjct: 179 IAESGVE 185
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 19 VVTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATM 70
+V L+K+ Q Y Q +L+ G+D GP L P G+ + +
Sbjct: 106 LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAI 165
Query: 71 GSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 106
GSG A ++ E +YKE L + E + L + A+ S +
Sbjct: 166 GSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 201
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 19 VVTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATM 70
+V L+K+ Q Y Q +L+ G+D GP L P G+ + +
Sbjct: 106 LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAI 165
Query: 71 GSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 106
GSG A ++ E +YKE L + E + L + A+ S +
Sbjct: 166 GSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 201
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 19 VVTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATM 70
+V L+K+ Q Y Q +L+ G+D GP L P G+ + +
Sbjct: 100 LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAI 159
Query: 71 GSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 106
GSG A ++ E +YKE L + E + L + A+ S +
Sbjct: 160 GSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 195
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 19 VVTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATM 70
+V L+K+ Q Y Q +L+ G+D GP L P G+ + +
Sbjct: 106 LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAI 165
Query: 71 GSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 106
GSG A ++ E +YKE L + E + L + A+ S +
Sbjct: 166 GSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 201
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 19 VVTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATM 70
+V L+K+ Q Y Q +L+ G+D GP L P G+ + +
Sbjct: 110 LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAI 169
Query: 71 GSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 106
GSG A ++ E +YKE L + E + L + A+ S +
Sbjct: 170 GSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 205
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 19 VVTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATM 70
+V L+K+ Q Y Q +L+ G+D GP L P G+ + +
Sbjct: 110 LVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAI 169
Query: 71 GSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 106
GSG A ++ E +YKE L + E + L + A+ S +
Sbjct: 170 GSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 205
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPH 59
+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI
Sbjct: 77 IVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLG 135
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS LP+A GSGS + ++E ++K+E + + ++ I D SG + +
Sbjct: 136 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMV 195
Query: 120 VITKGHKEYL 129
V+T E L
Sbjct: 196 VLTAAGVERL 205
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPH 59
+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI
Sbjct: 58 IVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLG 116
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS LP+A GSGS + ++E ++K+E + + ++ I D SG + +
Sbjct: 117 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMV 176
Query: 120 VITKGHKEYL 129
V+T E L
Sbjct: 177 VLTAAGVERL 186
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPH 59
+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI
Sbjct: 67 IVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLG 125
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS LP+A GSGS + ++E ++K+E + + ++ I D SG + +
Sbjct: 126 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMV 185
Query: 120 VITKGHKEYL 129
V+T E L
Sbjct: 186 VLTAAGVERL 195
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPH 59
+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI
Sbjct: 58 IVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLG 116
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS LP+A GSGS + ++E ++K+E + + ++ I D SG + +
Sbjct: 117 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMV 176
Query: 120 VITKGHKEYL 129
V+T E L
Sbjct: 177 VLTAAGVERL 186
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-----TGPHLHT 55
+ SQ +LH V A +L ++ Y+G A L +G + C GP ++
Sbjct: 133 WLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMICGYTRKEGPTIYY 189
Query: 56 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN 115
+ G+ +GSG A + +S YK L+ ++ + L +I + D SG +
Sbjct: 190 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 249
Query: 116 VDVCVITKGHKEYLRNH 132
V++ +T+ Y NH
Sbjct: 250 VNLYHVTEDGWIYHGNH 266
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-----TGPHLHT 55
+ SQ +LH V A +L ++ Y+G A L +G + C GP ++
Sbjct: 133 WLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMICGYTRKEGPTIYY 189
Query: 56 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN 115
+ G+ +GSG A + +S YK L+ ++ + L +I + D SG +
Sbjct: 190 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 249
Query: 116 VDVCVITKGHKEYLRNH 132
V++ +T+ Y NH
Sbjct: 250 VNLYHVTEDGWIYHGNH 266
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1FNT|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1VSY|L Chain L, Proteasome Activator Complex
pdb|1VSY|Z Chain Z, Proteasome Activator Complex
pdb|3L5Q|P Chain P, Proteasome Activator Complex
pdb|3L5Q|2 Chain 2, Proteasome Activator Complex
Length = 212
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-----TGPHLHT 55
+ SQ +LH V A +L ++ Y+G A L +G + C GP ++
Sbjct: 58 WLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMICGYTRKEGPTIYY 114
Query: 56 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN 115
+ G+ +GSG A + +S YK L+ ++ + L +I + D SG +
Sbjct: 115 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 174
Query: 116 VDVCVITKGHKEYLRNH 132
V++ +T+ Y NH
Sbjct: 175 VNLYHVTEDGWIYHGNH 191
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Y Chain Y, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|K Chain K, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|R Chain R, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|K Chain K, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Y Chain Y, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|K Chain K, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Y Chain Y, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|K Chain K, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Y Chain Y, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|K Chain K, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Y Chain Y, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|K Chain K, Proteasome Inhibition By Fellutamide B
pdb|3D29|Y Chain Y, Proteasome Inhibition By Fellutamide B
pdb|3E47|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|K Chain K, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Y Chain Y, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|K Chain K, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Y Chain Y, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|K Chain K, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Y Chain Y, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|K Chain K, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Y Chain Y, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|K Chain K, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Y Chain Y, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|K Chain K, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Y Chain Y, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Y Chain Y, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|3UN4|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|K Chain K, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Y Chain Y, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|L Chain L, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|K Chain K, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Y Chain Y, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|K Chain K, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Y Chain Y, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 212
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-----TGPHLHT 55
+ SQ +LH V A +L ++ Y+G A L +G + C GP ++
Sbjct: 58 WLGSQCRLHELREKERISVAAASKILSNLVYQYKG---AGLSMGTMICGYTRKEGPTIYY 114
Query: 56 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN 115
+ G+ +GSG A + +S YK L+ ++ + L +I + D SG +
Sbjct: 115 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 174
Query: 116 VDVCVITKGHKEYLRNH 132
V++ +T+ Y NH
Sbjct: 175 VNLYHVTEDGWIYHGNH 191
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ Q +++ V A LL ++ Y+G + ++ G D GP L+ +
Sbjct: 58 LLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSE 117
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDV 118
G+ + ++GSGS+ A + + Y L +E L AI + D SG V++
Sbjct: 118 GNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNL 176
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ + +L+ G V A LL + Y+G + ++ G D GP L+ + +
Sbjct: 58 LLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDN 117
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDV 118
G+ + + GSG+ A + +S Y++ L+ +E L AI D SG V++
Sbjct: 118 GTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNM 176
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ Q +++ V A LL ++ Y+G + ++ G D GP L+ +
Sbjct: 58 LLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSE 117
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDV 118
G+ + ++GSGS+ A + + Y L ++ L AI + D SG V++
Sbjct: 118 GNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 40 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 99
AL+ GGVD GP L + P G+ +GS S A + + Y + +T E I+ +
Sbjct: 140 ALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSL 199
Query: 100 DAICSGIFNDLGSGSNVDVCVITKGH 125
I + + + +N+++ + G
Sbjct: 200 -IILKQVMEEKLNATNIELATVQPGQ 224
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 40 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVV 99
AL+ GGVD GP L + P G+ +GS S A + + Y + +T E I+ +
Sbjct: 140 ALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSL 199
Query: 100 DAICSGIFNDLGSGSNVDVCVITKGH 125
I + + + +N+++ + G
Sbjct: 200 -IILKQVMEEKLNATNIELATVQPGQ 224
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALT------LLKKHLFNYQGYVQAALVLGGVDCTGP-HL 53
++ ++L++++ H+ ++ A+ L + F Y Y ++GG+D G +
Sbjct: 67 IIEARLKMYK-HSNNKAMTTGAIAAMLSTILYSRRFFPYYVYN----IIGGLDEEGKGAV 121
Query: 54 HTIYPHGSTDTLPFATMGSGSLAAMAMFESK--YKE-------GLTKDEGIQLVVDAICS 104
++ P GS F GS S + +++ +K LT D ++LV D S
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFIS 181
Query: 105 GIFNDLGSGSNVDVCVITKGHKEYLRNHLLP 135
D+ +G + +C++T KE +R +P
Sbjct: 182 AAERDVYTGDALRICIVT---KEGIREETVP 209
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 42 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 98
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 133 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 192
Query: 99 VDAI 102
I
Sbjct: 193 AKII 196
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 42 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 98
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 131 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 190
Query: 99 VDAI 102
I
Sbjct: 191 AKII 194
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 42 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 98
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 137 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 196
Query: 99 VDAI 102
I
Sbjct: 197 AKII 200
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 42 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 98
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 137 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 196
Query: 99 VDAI 102
I
Sbjct: 197 AKII 200
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 42 VLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLV 98
+ GGVD G HL+ + P GS A G G +A A E + EGL+ E ++
Sbjct: 136 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 195
Query: 99 VDAI 102
I
Sbjct: 196 AKII 199
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALT------LLKKHLFNYQGYVQAALVLGGVDCTGP-HL 53
++ ++L++++ H+ ++ A+ L + F Y Y ++GG+D G +
Sbjct: 67 IIEARLKMYK-HSNNKAMTTGAIAAMLSTILYSRRFFPYYVYN----IIGGLDEEGKGAV 121
Query: 54 HTIYPHGSTDTLPFATMGSGSLAAMAMFESK--YKE-------GLTKDEGIQLVVDAICS 104
++ P GS F GS S + +++ +K L+ D ++LV D S
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181
Query: 105 GIFNDLGSGSNVDVCVITK 123
D+ +G + +C++TK
Sbjct: 182 AAERDVYTGDALRICIVTK 200
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 20 VTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMG 71
+T L KK Q Y Q +L++ GV+ P L+ P G+ +G
Sbjct: 107 ITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATAIG 165
Query: 72 SGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDL 110
G +A FE +Y++ L+ D+ + L + A+ I ++L
Sbjct: 166 MGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL 204
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 20 VTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMG 71
+T L KK Q Y Q +L++ GVD P L+ P G+ +G
Sbjct: 98 ITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEV-PKLYETDPSGALLEYKATAIG 156
Query: 72 SGSLAAMAMFESKYKEGLTKDEGIQL 97
G A FE +Y++ L+ D+ + L
Sbjct: 157 MGRNAVTEFFEKEYRDDLSFDDAMVL 182
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 34 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 84
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 120 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 179
Query: 85 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 180 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 222
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 34 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 84
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 120 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 179
Query: 85 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 180 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 222
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 34 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 84
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 119 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 178
Query: 85 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 179 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 221
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 19 VVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAA 77
V+ A ++K + Y+ + A L++ G D G ++ G PF GSGS
Sbjct: 76 VLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTM-GGMLIRQPFTIGGSGSSYI 134
Query: 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG---HKEYLRNHL 133
++ YK G+T +E + +AI + D SG + + IT H+ L + L
Sbjct: 135 YGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDEL 193
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 34 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 84
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 110 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 169
Query: 85 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 170 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 212
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 18 RVVTALTLLKKHLFNYQG---YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGS 74
++VTAL +K+ + G + + L +G G L+ P G+ +G+ S
Sbjct: 109 QLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNS 168
Query: 75 LAAMAMFESKYKEG-LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 123
AA++M + YKEG +T + L V + + S V++ +T+
Sbjct: 169 AAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTR 218
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 34 QGYVQ--------AALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK 84
QGY Q + + G D G L+T P G+ ++G+ + AA + +
Sbjct: 107 QGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 166
Query: 85 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127
YK+ + D+ I+L + + + + ++ I KG +
Sbjct: 167 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 209
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 41 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQ---L 97
L+ G + G L+ + P GS +G GS+AA E ++ + L ++ I L
Sbjct: 116 LIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALL 175
Query: 98 VVDAICSGIFNDLGSGSNVDVCVI 121
+ G FN G +++ +I
Sbjct: 176 TLKESVEGEFN----GDTIELAII 195
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 18 RVVTALTLLKKHLFNYQG---YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGS 74
++VTAL +K+ + G + + L +G G L+ P G+ +G+ S
Sbjct: 109 QLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNS 168
Query: 75 LAAMAMFESKYKEG-LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 123
AA++M + YKEG +T + L + + + S V++ +T+
Sbjct: 169 AAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTR 218
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 41 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQ---L 97
L+ G + G L+ + P GS +G GS+AA E ++ + L ++ I L
Sbjct: 135 LIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALL 194
Query: 98 VVDAICSGIFNDLGSGSNVDVCVI 121
+ G FN G +++ +I
Sbjct: 195 TLKESVEGEFN----GDTIELAII 214
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 38 QAALVLGGVDC--TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGI 95
Q +++GG D P L+ I G+ LP+ G ++ + Y+ +T +EG+
Sbjct: 99 QVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158
Query: 96 QLV 98
L+
Sbjct: 159 DLL 161
>pdb|3CJI|C Chain C, Structure Of Seneca Valley Virus-001
Length = 284
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 36 YVQAALVLGGVDCTGPHLHTIYPH------------------GSTDTLPFATMGSGSLAA 77
Y + G + P+ T++PH G T T T S +L
Sbjct: 181 YYRPPNWTWGPNFINPYQVTVFPHQILNARTSTSVDINVPYIGETPTQSSETQNSWTLLV 240
Query: 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDL 110
M + YKEG T D I V S FN L
Sbjct: 241 MVLVPLDYKEGATTDPEITFSVRP-TSPYFNGL 272
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 70 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
M G L A+ E + +G++K+E I ++ A+ S + G+ NV+V +
Sbjct: 1 MNIGLLEALDQLEEE--KGISKEEVIPILEKALVSAYRKNFGNSKNVEVVI 49
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 73 GSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
G L A+ E + +G++K+E I ++ A+ S + G+ NV+V +
Sbjct: 29 GLLEALDQLEEE--KGISKEEVIPILEKALVSAYRKNFGNSKNVEVVI 74
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 41 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQ 96
L++ G D +G HL P G+ L +G+ S A E + DE I+
Sbjct: 132 LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIK 191
Query: 97 LVVDAICSGIFNDLGSGSNVDVCVITK 123
V+AI + ++ + N+ + ++ K
Sbjct: 192 AGVEAISQSLRDESLTVDNLSIAIVGK 218
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 41 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQ 96
L++ G D +G HL P G+ L +G+ S A E + DE I+
Sbjct: 133 LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIK 192
Query: 97 LVVDAICSGIFNDLGSGSNVDVCVITK 123
V+AI + ++ + N+ + ++ K
Sbjct: 193 AGVEAISQSLRDESLTVDNLSIAIVGK 219
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 41 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQ 96
L++ G D +G HL P G+ L +G+ S A E + DE I+
Sbjct: 131 LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIK 190
Query: 97 LVVDAICSGIFNDLGSGSNVDVCVITK 123
V+AI + ++ + N+ + ++ K
Sbjct: 191 AGVEAISQSLRDESLTVDNLSIAIVGK 217
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 41 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQ 96
L++ G D +G HL P G+ L +G+ S A E + DE I+
Sbjct: 132 LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIK 191
Query: 97 LVVDAICSGIFNDLGSGSNVDVCVITK 123
V+AI + ++ + N+ + ++ K
Sbjct: 192 AGVEAISQSLRDESLTVDNLSIAIVGK 218
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 41 LVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGL----TKDEGIQ 96
L++ G D +G HL P G+ L +G+ S A E + DE I+
Sbjct: 131 LLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIK 190
Query: 97 LVVDAICSGIFNDLGSGSNVDVCVITK 123
V+AI + ++ + N+ + ++ K
Sbjct: 191 AGVEAISQSLRDESLTVDNLSIAIVGK 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,365,146
Number of Sequences: 62578
Number of extensions: 209582
Number of successful extensions: 495
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 74
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)