BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030476
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2
PE=1 SV=2
Length = 274
Score = 315 bits (808), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 151/178 (84%), Positives = 169/178 (94%), Gaps = 1/178 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
MVSSQL+LHRY TGR+SRVVTALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHG
Sbjct: 97 MVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV +AICSGIFNDLGSGSNVD+CV
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE-GGDAMEE 177
ITKGHKEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL ERVE+VE G+AMEE
Sbjct: 217 ITKGHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLERVEIVEVAGEAMEE 274
>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1
PE=1 SV=2
Length = 273
Score = 313 bits (801), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 147/177 (83%), Positives = 168/177 (94%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
MVSSQL+LHRY TGR+SRV+TALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHG
Sbjct: 97 MVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV ++ICSGIFNDLGSGSNVD+CV
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVEGGDAMEE 177
ITKG+KEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL ERVE+ E G+AMEE
Sbjct: 217 ITKGNKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLERVEITEVGEAMEE 273
>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7
PE=3 SV=1
Length = 266
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 127/171 (74%), Gaps = 3/171 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS+L+LH+ TG+++RV+TALT+LK+ LF YQG++ AAL+LGG+D GP LHTIYPHG
Sbjct: 92 LISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGIDINGPSLHTIYPHG 151
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE+KYK +TK+E I LV +AI SGIFNDLGSGSNVDV V
Sbjct: 152 STDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTV 211
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKITPLRERVEVVE 170
I LRN+ PN R F N Y F + T VL I PL +V V+E
Sbjct: 212 IEPSGVTVLRNYQTPNERKFRN-NPYIFKQGTTPVLKQDIAPLSTKV-VIE 260
>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1
Length = 277
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS L+LH TGR RVVTA +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHG
Sbjct: 101 LISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE K++ + ++E LV +AI +GIFNDLGSGSN+D+CV
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 170
I+K ++LR + +PN + + T VL KITPL +EV+E
Sbjct: 221 ISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPL--EIEVLE 268
>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1
SV=1
Length = 277
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 125/175 (71%), Gaps = 2/175 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS L+LH TGR RVVTA +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHG
Sbjct: 101 LISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE K++ + ++E +LV +AI +GIFNDLGSGSN+D+CV
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERV--EVVEGGD 173
I+K ++LR + +PN + + T VL K+TPL V E+V+ D
Sbjct: 221 ISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPLELEVLEEIVQTMD 275
>sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1
Length = 277
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS L+LH TGR RVVTA +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHG
Sbjct: 101 LISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE K++ + ++E +LV +AI +GIFNDLGSGSN+D+CV
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 170
I+K ++LR +PN + + T VL K+TPL +EV+E
Sbjct: 221 ISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPL--EIEVLE 268
>sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2
Length = 277
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS L+LH TGR RVVTA +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHG
Sbjct: 101 LISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE K++ + ++E QLV +AI +GIFNDLGSGSN+D+CV
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 170
I+K ++LR + +PN + + T VL K+T L +EV+E
Sbjct: 221 ISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTAL--DIEVLE 268
>sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1
Length = 277
Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 126/171 (73%), Gaps = 4/171 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++SS L+LH TGR RVVTA +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHG
Sbjct: 101 LISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LP+ TMGSGSLAAMA+FE K++ + ++E +LV +AI +GIFNDLGSGSN+D+CV
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLT-KITPLRERVEVVE 170
I+K ++LR + +PN + + Y K T +LT K+T L +EV+E
Sbjct: 221 ISKSKLDFLRPYSVPNKKGTRFGR-YRCEKGTNAVLTEKVTTL--EIEVLE 268
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HG
Sbjct: 87 LIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHG 146
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD + ++GSGSLAAMA+ ES +K+ LTK+E I+L DAI +GI+NDLGSGSNVDVCV
Sbjct: 147 STDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 206
Query: 121 ITKGHK-EYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 156
+ G EYLRN+L PN R K Y FP+ T +L
Sbjct: 207 MEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 242
>sp|Q09841|PSB2_SCHPO Probable proteasome subunit beta type-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup1 PE=2 SV=1
Length = 267
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M+SS ++LH +T R+ RVVTALT+LK+HLF YQG++ A LVLGG DC GPHL TI HG
Sbjct: 93 MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHG 152
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S+D LP+ +GSGSLAA+++ E+KY+ L + E ++LV +AI +GIFNDLGSGSN D+ V
Sbjct: 153 SSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVV 212
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 156
I + R + PN R +K Y++ + T +L
Sbjct: 213 IDEEKATPYRGYSKPNERATKQSK-YTYDRGTTAVL 247
>sp|Q3T0T1|PSB10_BOVIN Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1
Length = 273
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 4/171 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M +S ++LH TGRE RV T +L++ LF YQGYV A+L++GGVD TGP L++++PHG
Sbjct: 97 MAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S LPF +GSG AA+A+ E +++ +T + +L+V+AI +GI DLGSG NVD CV
Sbjct: 157 SYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSF-PKKTEVLLTKITPLRERVEVVE 170
IT + LR P + + Y F P T VL + PL +E+VE
Sbjct: 217 ITAAGAKMLRALSSPT-KPIERSSQYRFAPGTTPVLSQTVVPL--TLELVE 264
>sp|P40306|PSB10_HUMAN Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1
Length = 273
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 110/172 (63%), Gaps = 6/172 (3%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
MV+S+++LH TGRE RV T +L++ LF YQG+V A+L++GGVD TGP L+ ++PHG
Sbjct: 97 MVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S LPF +GSG AA+A+ E +++ +T + L+V+A+ +GI DLGSG NVD CV
Sbjct: 157 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKG-YSF-PKKTEVLLTKITPLRERVEVVE 170
ITK + LR L +P V G Y F P T VL + PL +E+VE
Sbjct: 217 ITKTGAKLLRT--LSSPTEPVKRSGRYHFVPGTTAVLTQTVKPL--TLELVE 264
>sp|O35955|PSB10_MOUSE Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1
Length = 273
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M +S+++LH TGRE RV T +L++ LF YQG+V A+LV+GGVD GP L+ ++PHG
Sbjct: 97 MAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S LPF +GSG AA+A+ E +++ +T + +L+V+AI +GI +DLGSG NVD CV
Sbjct: 157 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKG-YSF-PKKTEVLLTKITPL 162
IT G + R L P V G Y F P T VL ++ PL
Sbjct: 217 ITAGGAKLQRA--LSTPTEPVQRAGRYRFAPGTTPVLTREVRPL 258
>sp|Q4KM35|PSB10_RAT Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2
SV=1
Length = 273
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 9/177 (5%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M +S+++LH TGRE RV T +L++ LF YQG+V A+L++GGVD GP L++++PHG
Sbjct: 97 MAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLNGPQLYSVHPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S LPF +GSG AA+A+ E +++ +T + +L+V+AI +GI DLGSG +VD CV
Sbjct: 157 SYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSVDACV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKG-YSFPKKT------EVLLTKITPLRERVEVVE 170
IT G + R L +P V G Y F T EV + L E V+ +E
Sbjct: 217 ITAGGAKLQRA--LSSPIEPVQRAGQYRFAPGTTPVQTQEVRALTLELLEETVQAME 271
>sp|Q8SQN7|PSB2_ENCCU Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PUP1 PE=1 SV=1
Length = 227
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M S +L+L + R V + +HL Y G + AAL++GG+D G HL+ I+PHG
Sbjct: 64 MASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHG 123
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S ++ F ++GSGSL A+A ES+Y+ + KDE I L DA+ +GI NDL SGSN+DVCV
Sbjct: 124 SENSALFVSLGSGSLGAIATLESRYR-AMDKDEAIDLACDAVKAGILNDLYSGSNIDVCV 182
Query: 121 ITKGHKEYLRNH 132
I E+LRN+
Sbjct: 183 IDYSGVEFLRNY 194
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY---VQAALVLGGVDCTGPHLHTIY 57
++S + L++ GR V + TLL +L +GY VQ L++GGVD TGP ++++
Sbjct: 67 IMSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQ--LLVGGVDATGPSVYSVD 124
Query: 58 PHG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNV 116
G +T GSGS A + E +YK+ LT+DE I+L + A+ + + D SG +
Sbjct: 125 AMGGATRESDIVATGSGSPMAYGVLEDRYKKDLTEDEAIELAIRALRAAMRRDSASGEGI 184
Query: 117 DVCVITKGHKEYLRNHLLPNPRTFVNA 143
V +ITK L L V A
Sbjct: 185 HVVIITKDAYSELSEERLEQYTAAVTA 211
>sp|Q18GX3|PSB_HALWD Proteasome subunit beta OS=Haloquadratum walsbyi (strain DSM 16790)
GN=psmB PE=3 SV=1
Length = 243
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGS 61
+ ++++L+ G E + AL+ L + G+ +LGGVD GPH+++I P GS
Sbjct: 108 IRAEVRLYEARRG-EDMSMEALSTLLGNFLRSGGFFIVQPILGGVDDDGPHIYSIDPAGS 166
Query: 62 TDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121
+ GSGS A+ + E +Y E L+ +E + +I S + DL SG+ ++VCV+
Sbjct: 167 IIEEEYTVTGSGSQYALGVLEQQYNEDLSIEEAKTVAARSIESAVERDLASGNGINVCVV 226
Query: 122 TK 123
T+
Sbjct: 227 TE 228
>sp|D4GYZ1|PSB_HALVD Proteasome subunit beta OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmB PE=1 SV=1
Length = 243
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 4 SQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTD 63
++++L+ G E + AL+ L + G+ +LGGVD TGPH+++I P GS
Sbjct: 110 AEVRLYEARRG-EDMSMQALSTLVGNFLRSGGFYVVQPILGGVDETGPHIYSIDPAGSIL 168
Query: 64 TLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 123
+ GSGS A+ + E ++++GL+ +E + AI S + DL SG+ +++ V+T+
Sbjct: 169 EEEYTVTGSGSQYALGVLEQEFEDGLSIEEAKGVATKAIRSAVERDLASGNGINIAVVTE 228
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYP 58
+VS + QL++ ES + + L + N Y + L++GGVD GP ++++ P
Sbjct: 67 LVSVESQLYKMRRN-ESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLDP 125
Query: 59 HG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVD 117
G S + + GSGS A + E +Y+E + EG+ L + AI + D SG N+D
Sbjct: 126 MGGSIEETRISATGSGSPMAYGVLEDQYREDIAVKEGLDLAIRAIHNATKRDSASGENID 185
Query: 118 VCVITKGHKEYLRNHLLPNPRTFVN 142
V VITK + L + + R +N
Sbjct: 186 VVVITKEAFKRLDPEEVKSRRALLN 210
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYVQAALVLGGVDCTGPHLHT 55
+++ + L++ RE V A TLL +L F Y YVQ L++GG+D GP +++
Sbjct: 69 IITVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPY--YVQ--LLVGGIDDHGPSVYS 124
Query: 56 IYPHG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGS 114
+ G +T + GSGS A + E +Y+ G+ +DE ++L V A+ S + D GSG
Sbjct: 125 VDAMGGATKEEDIVSTGSGSPMAYGVLEDRYRPGMNEDEAVELAVRALRSAMKRDAGSGE 184
Query: 115 NVDVCVITKGH-----KEYLRNHL 133
+ V VITK +E ++ HL
Sbjct: 185 GIHVVVITKDRYENVSEETIKKHL 208
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG---YVQAALVLGGVDCTGPHLHTI- 56
+++ + L+ G++ V A T+L +L + YVQ L++GGVD +GP ++++
Sbjct: 69 IINVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQ--LLVGGVDTSGPSVYSVD 126
Query: 57 YPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNV 116
G+T F + GSGSL A + E ++K +T++E I+L V A+ + + D SG
Sbjct: 127 AAGGATLEENFVSTGSGSLTAYGVLEDRFKPNMTEEEAIELAVRALRAAMLRDSASGEGY 186
Query: 117 DVCVITKGHKEYL 129
+V +IT+ EYL
Sbjct: 187 NVVIITQEKFEYL 199
>sp|A1RWY6|PSB1_THEPD Proteasome subunit beta 1 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB1 PE=3 SV=1
Length = 200
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 10 RYH---TGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLP 66
RY+ TG V + TL LF Y+ + +++GGVD GP L ++ G+
Sbjct: 76 RYYKTITGDSMPVKSVATLASLILFQYRPILSVQMLIGGVDSDGPSLFSVDWLGTVTREK 135
Query: 67 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 123
+ GSGS A+++ E +Y+E L+ +E + L V A+ + D GSG VD+ ITK
Sbjct: 136 YTATGSGSPYAVSLLEHEYREDLSLEEAVNLAVKAVNIALARDPGSGEGVDIATITK 192
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYP 58
+VS + QL++ ES + +T L + + Y + L++GGVD GP ++++
Sbjct: 67 LVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDA 125
Query: 59 HG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVD 117
G S + + GSGS A + E +Y+E +T EG+ L + AI + D SG N+D
Sbjct: 126 MGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENID 185
Query: 118 VCVITKGHKEYLRNHLLPNPRTFVN 142
V VITK + L + + R +N
Sbjct: 186 VVVITKEAFKRLDPEEVKSRRALLN 210
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYP 58
+VS + QL++ ES + + L + N Y + L++GGVD GP ++++
Sbjct: 67 LVSVESQLYKMRRN-ESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLDA 125
Query: 59 HG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVD 117
G S + + GSGS A + E +YKE + EG+ L + AI + + D SG N+D
Sbjct: 126 MGGSIEETRISATGSGSPMAYGVLEDQYKEDIAVKEGLDLAIRAIHNAMKRDSASGENID 185
Query: 118 VCVITK 123
V VITK
Sbjct: 186 VVVITK 191
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLL-----KKHLFNYQGYVQAALVLGGVDCTGPHLHT 55
+V ++++L+ + +V T LL ++ LF Y A +V+GG+D G HL++
Sbjct: 63 IVEAEMRLYELDSNISPKVWTVAKLLSYILYERRLFPYY----AEIVVGGLDEEGSHLYS 118
Query: 56 IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN 115
+ P G+ + +GSG+ A+++ ES YK+ ++ DE + L + ++ + + D SG
Sbjct: 119 LDPIGAIIEDDYVALGSGTQLAISIVESNYKKDMSLDEALSLALKSVYAAMKRDAASGDG 178
Query: 116 VDVCVITK 123
VDV VI K
Sbjct: 179 VDVLVIGK 186
>sp|Q97AZ7|PSB_THEVO Proteasome subunit beta OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=psmB
PE=3 SV=1
Length = 211
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPH 59
+ ++L+L+R R + + A+ L ++ N Y+ L++GG+D T PH+ +I
Sbjct: 67 MKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TSPHVFSIDAA 124
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
G + +A+ GSGS + ES+Y E L+ DEG+ LV+ AI + D SG +DV
Sbjct: 125 GGSVEDIYASTGSGSPFVYGVLESQYNEKLSIDEGVDLVIRAISAAKQRDSASGGMIDVA 184
Query: 120 VITK 123
VITK
Sbjct: 185 VITK 188
>sp|P28061|PSB_THEAC Proteasome subunit beta OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=psmB PE=1 SV=1
Length = 211
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPH 59
+ ++L+L+R R + + A+ L ++ N Y+ L++GG+D T PH+ +I
Sbjct: 67 MKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAA 124
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI + D SG +DV
Sbjct: 125 GGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVA 184
Query: 120 VITK 123
VIT+
Sbjct: 185 VITR 188
>sp|Q980L4|PSB1_SULSO Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEVSTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y ++ D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMSLDVATQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
+I K K N +P
Sbjct: 182 IIDK--KGNYENKFIP 195
>sp|D0KRX1|PSB1_SULS9 Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain 98/2)
GN=psmB1 PE=3 SV=1
Length = 196
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEVSTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y ++ D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMSLDVATQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
+I K K N +P
Sbjct: 182 IIDK--KGNYENKFIP 195
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 20 VTALT-LLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYPHGSTDT-LPFATMGSGSLA 76
+ AL+ LL L+ Y+ Y+Q +++GGVD +GP L ++ P G T + F++ GSGS
Sbjct: 84 INALSMLLSNLLWEYRIFYIQ--VLVGGVDKSGPKLFSLDPAGGRITEVKFSSTGSGSPL 141
Query: 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHL 133
A + E +YK+ ++ ++G++L A+ S + D SG+ + CVIT G E +
Sbjct: 142 AYGVLEDRYKQDMSVEQGVELAAKALESAMKRDSASGNGMQFCVITPGKVEIFEREV 198
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYP- 58
V SQL R + ES + + L + N Y + L++GGVD GP ++++
Sbjct: 70 VESQLYKMRRN---ESMTIKGIATLMSNFLNSNRYYPMMVQLLIGGVDKNGPGIYSLDAL 126
Query: 59 HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDV 118
GS + + GSGS A + E +Y+E +T EG+ L + AI + D SG N+DV
Sbjct: 127 GGSIEETRISATGSGSPMAYGVLEDQYREDMTVKEGLDLAIRAIHNATKRDSASGENIDV 186
Query: 119 CVITK 123
VITK
Sbjct: 187 VVITK 191
>sp|Q2NI68|PSB_METST Proteasome subunit beta OS=Methanosphaera stadtmanae (strain DSM
3091) GN=psmB PE=3 SV=1
Length = 205
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
++ +++ L++ ++ + AL +L ++ + Y VQ +L GVD G L+T+ P
Sbjct: 67 ILKAEISLYKLRNEKDMSI-DALAVLTSNILKSRPYYVQT--ILAGVDKDGAKLYTLDPS 123
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS F + GSGS A + E +Y E +T +EG ++ + AI S + D+ SG+N +
Sbjct: 124 GSYIPDTFTSTGSGSPYAFGVLEDRYNEDITTEEGKKIAIKAITSAMERDVYSGNNYRLG 183
Query: 120 VITK-GHKEYLRNHL 133
VITK G K Y + +
Sbjct: 184 VITKDGMKIYTKEEI 198
>sp|Q12YV7|PSB_METBU Proteasome subunit beta OS=Methanococcoides burtonii (strain DSM
6242) GN=psmB PE=3 SV=1
Length = 210
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 15 RESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYP-HGSTDTLPFATMG 71
+ES + +T L ++ + Q Y + L++GGVD GP ++++ G+ + + G
Sbjct: 80 QESITIKGITTLLSNMLSGQRYYPLMVQLLIGGVDKNGPAIYSLDALGGNIEETRAVSTG 139
Query: 72 SGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRN 131
SGS A + E +Y E +T EG+ L + A+ + + D SG N+DV VITK E L
Sbjct: 140 SGSPMAYGVLEDRYTEDMTVVEGVDLAIRALHNAMKRDSASGENIDVVVITKDKYERLDP 199
Query: 132 HLLPNPRTFVN 142
+ R +N
Sbjct: 200 EAVMKKRELLN 210
>sp|C3N7K2|PSB2_SULIY Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
++ K K N +P
Sbjct: 182 IMDK--KGNYENKFIP 195
>sp|C3MY41|PSB2_SULIM Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
++ K K N +P
Sbjct: 182 IMDK--KGNYENKFIP 195
>sp|C3MRE5|PSB2_SULIL Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
++ K K N +P
Sbjct: 182 IMDK--KGNYENKFIP 195
>sp|C4KIR0|PSB2_SULIK Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmB2 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
++ K K N +P
Sbjct: 182 IMDK--KGNYENKFIP 195
>sp|D2PDG6|PSB2_SULID Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.D.8.5
/ Lassen #2) GN=psmB2 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
++ K K N +P
Sbjct: 182 IMDK--KGNYENKFIP 195
>sp|C3MZI0|PSB2_SULIA Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.27)
GN=psmB2 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
++ K K N +P
Sbjct: 182 IMDK--KGNYENKFIP 195
>sp|C3NFX2|PSB1_SULIN Proteasome subunit beta 1 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + TG+ V A LL L+ Y+ + ++ GGVD GP L+ + P
Sbjct: 62 IMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D QL+ AI + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIAAQLITKAIKASIERDITSGDGIDLA 181
Query: 120 VITKGHKEYLRNHLLP 135
++ K K N +P
Sbjct: 182 IMDK--KGNYENKFIP 195
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 9 HRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPF 67
+ GRE RV +L L++Y+ + +V+GG D GP ++ + P GS +
Sbjct: 83 YELQLGREIRVRGLAKILSLILYSYKLAPLMTEVVVGGFDEKGPQIYVLDPVGSLIEDKY 142
Query: 68 ATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 123
+GSG A+ + E +Y+E + DE +L V AI I D SG VDV IT+
Sbjct: 143 VALGSGGPIALGIIEKEYREDIDVDEAEKLAVSAIREAIERDAVSGDGVDVLRITE 198
>sp|B5IEE5|PSB_ACIB4 Proteasome subunit beta OS=Aciduliprofundum boonei (strain DSM
19572 / T469) GN=psmB PE=3 SV=1
Length = 210
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 2 VSSQLQLHRYHTGRESRVVTALTLL-----KKHLFNYQGYVQAALVLGGVDCTGPHLHTI 56
+ +++ L+R V A TLL ++ F Y YV L++GG D G H+ I
Sbjct: 66 MRAEINLYRIRRKMYMPVGAAATLLSNILNERKFFPY--YV--GLLVGGFDSKGYHVFAI 121
Query: 57 YPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNV 116
G +A++GSGSL + E ++K+ L+ DEGI LV+ I + + D SG +
Sbjct: 122 DAAGGAIEDKYASVGSGSLFVYGVLEDRWKDDLSLDEGINLVIRGINAAMRRDAASGDGI 181
Query: 117 DVCVITK 123
V ITK
Sbjct: 182 SVATITK 188
>sp|D5EAS6|PSB_METMS Proteasome subunit beta OS=Methanohalophilus mahii (strain ATCC
35705 / DSM 5219 / SLP) GN=psmB PE=3 SV=1
Length = 210
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYP 58
M+S + +L++ +ES + LT L ++ Q Y + L++GGVD GP + ++
Sbjct: 67 MISVESKLYKMRR-QESITIKGLTTLLSNILGGQRYFPLMVQLLVGGVDKNGPAIFSLDA 125
Query: 59 HGST--DTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNV 116
G +T AT GSGS A + E +Y EG+ DEG++L V A+ + + D SG+ +
Sbjct: 126 MGGNIEETKAVAT-GSGSPMAYGVLEDRYHEGINVDEGMELAVRALYNAMKRDSASGNGI 184
Query: 117 DVCVIT 122
DV IT
Sbjct: 185 DVVKIT 190
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFN----YQGYVQAALVLGGVDCTGPHLHTI 56
++S +++L+ E V A+ L ++ N + +VQ L++GGVD GP +++I
Sbjct: 70 LISVEIKLYEIRK-EEKPTVKAIATLLSNILNSVRWFPYFVQ--LLVGGVDKRGPSIYSI 126
Query: 57 -YPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN 115
G+ + + GSGS A + E +Y +T D+G++L V AI S + D SG
Sbjct: 127 DLLGGAIEEIDIVATGSGSPTAYGVLEDRYTPEITVDDGVELAVRAIYSAMRRDSASGDG 186
Query: 116 VDVCVITK 123
+DV ITK
Sbjct: 187 IDVVKITK 194
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 16 ESRVVTALTLLKKHLFNYQGYVQ--AALVLGGVDCTGPHLHTIYP-HGSTDTLPFATMGS 72
E V A+ L +L N Y L++GGVD TG +++I P G+ + + GS
Sbjct: 81 EEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGVDKTGAKIYSIDPIGGAIEEIDIVATGS 140
Query: 73 GSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129
GS A + E Y++ + DE ++L + AI S + D SG +DV IT KEY+
Sbjct: 141 GSPMAYGVLEDNYRKDINVDEAVELAIRAIYSAMKRDSASGDGIDVVKIT--EKEYV 195
>sp|Q975U8|PSB1_SULTO Proteasome subunit beta 1 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB1 PE=3 SV=1
Length = 197
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPH 59
+++ +++ + + + V A LL L+ Y+ + L+ GGVD GP L + P
Sbjct: 62 LMNVEIKYYEMYNNKPISVKAAAKLLSVILYQYKWTPFISELLFGGVDDEGPKLFVLDPI 121
Query: 60 GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119
GS +A +GSG+ A+ + ES+Y + D+G ++V+ A+ + I D+ SG +D+
Sbjct: 122 GSLIEDNYAAVGSGARVAIGVLESEYDPSMNLDKGKEIVLKALKAAIERDVTSGDGIDIL 181
Query: 120 VITKGH 125
I + +
Sbjct: 182 TIKRDN 187
>sp|Q4JAY3|PSB1_SULAC Proteasome subunit beta 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmB1 PE=3 SV=1
Length = 195
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ---AALVLGGVDCTGPHLHTIY 57
+++ +++ + + R+ A LL L YQ V + L+ GGVD GP L +
Sbjct: 62 IMNVEIKYYEMYNSRKISARAAAKLLSVIL--YQNKVLPYISELLFGGVDEDGPKLFILD 119
Query: 58 PHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVD 117
P GS +A +GSG+ A+ + E++Y E LT + +L + ++ S + D+ SG +D
Sbjct: 120 PIGSLIEDSYAAVGSGARVAIGVLEAEYNESLTSEAAKELAIKSMKSAVERDVMSGDGID 179
Query: 118 VCVITKGH 125
+ +I K +
Sbjct: 180 ILIINKNN 187
>sp|B9LTS6|PSB_HALLT Proteasome subunit beta OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=psmB PE=3 SV=1
Length = 243
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 22 ALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF 81
AL+ L +L + +LGGVD G H+++I G T + GSGS A+ +
Sbjct: 127 ALSTLTGNLLRSGAFYIVQPILGGVDDEGSHIYSIDALGGTTEEEYTVTGSGSQYALGVL 186
Query: 82 ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 122
E +Y + +T DE + AI S + DL SG+ ++V V+T
Sbjct: 187 EQEYDDDVTVDEAKTMAAKAIQSAVERDLASGNGINVAVVT 227
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 10 RYHTGRESRVVTALTL-------LKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGST 62
R + R +R+++A L L L ++ Y+ L++GG + P L+ + P GS
Sbjct: 74 RLYELRHNRMISARALANMISHVLHSSLKAFRPYL-VQLIVGGFNDDDPALYNLDPSGSI 132
Query: 63 DTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 122
+ GSGS A + E++Y+EG++ D+ I++ V A+ S + D G+G V V IT
Sbjct: 133 IEEDYTATGSGSPTAYGVLEAEYEEGMSLDDAIEVAVRAVKSALERDTGTGEGVTVVTIT 192
Query: 123 K--GHKE 127
+ G++E
Sbjct: 193 REEGYRE 199
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB2 PE=3 SV=1
Length = 198
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 33 YQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKD 92
+ G A LV+GG+D +GP + + P G F+ +GSG+ A + E +KEG+++
Sbjct: 95 FSGIYYAELVVGGIDNSGPKIFVLDPAGGLMEENFSAVGSGAQIATGILERFFKEGMSEK 154
Query: 93 EGIQLVVDAICSGIFNDLGSGSNVDVCVIT-KGHK 126
E ++L A+ I D SG +D+ +IT KG +
Sbjct: 155 EAVELAERAMREAISRDALSGDGIDLLIITSKGSR 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,560,245
Number of Sequences: 539616
Number of extensions: 2657560
Number of successful extensions: 6609
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 6327
Number of HSP's gapped (non-prelim): 307
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)