Query 030476
Match_columns 177
No_of_seqs 179 out of 1366
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 14:17:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0173 20S proteasome, regula 100.0 1.3E-43 2.8E-48 282.1 15.1 162 1-163 95-257 (271)
2 cd03763 proteasome_beta_type_7 100.0 4.4E-32 9.5E-37 213.1 18.2 131 2-132 59-189 (189)
3 cd03761 proteasome_beta_type_5 100.0 4.9E-32 1.1E-36 212.9 17.5 129 1-129 58-187 (188)
4 cd03758 proteasome_beta_type_2 100.0 1.5E-30 3.3E-35 205.2 17.1 129 1-129 59-191 (193)
5 cd03762 proteasome_beta_type_6 100.0 5.2E-30 1.1E-34 201.0 17.3 128 1-128 58-186 (188)
6 PTZ00488 Proteasome subunit be 100.0 2.7E-30 5.9E-35 211.1 16.2 134 1-134 97-231 (247)
7 cd03759 proteasome_beta_type_3 100.0 4.1E-30 8.9E-35 203.0 16.6 129 1-129 61-192 (195)
8 cd03765 proteasome_beta_bacter 100.0 5.7E-30 1.2E-34 207.7 17.5 133 1-134 61-210 (236)
9 COG0638 PRE1 20S proteasome, a 100.0 4.3E-30 9.4E-35 208.6 16.6 135 1-135 88-226 (236)
10 cd03764 proteasome_beta_archea 100.0 1.3E-29 2.7E-34 198.8 17.8 128 2-129 59-187 (188)
11 cd03760 proteasome_beta_type_4 100.0 1.2E-29 2.5E-34 200.6 16.6 129 2-130 61-196 (197)
12 TIGR03634 arc_protsome_B prote 100.0 1.7E-29 3.6E-34 197.6 17.1 125 2-126 60-185 (185)
13 cd03757 proteasome_beta_type_1 100.0 2.2E-29 4.8E-34 201.3 17.2 129 1-129 66-205 (212)
14 cd03750 proteasome_alpha_type_ 100.0 8.2E-29 1.8E-33 199.9 16.6 132 2-134 85-222 (227)
15 cd01912 proteasome_beta protea 100.0 2.2E-28 4.8E-33 191.4 17.4 128 2-129 59-188 (189)
16 TIGR03633 arc_protsome_A prote 100.0 2.3E-27 5.1E-32 190.9 17.1 126 2-128 87-217 (224)
17 TIGR03690 20S_bact_beta protea 100.0 1.6E-27 3.5E-32 191.5 15.7 134 1-134 60-207 (219)
18 KOG0175 20S proteasome, regula 100.0 3.7E-28 8.1E-33 194.3 10.2 134 1-134 129-263 (285)
19 cd03749 proteasome_alpha_type_ 100.0 4.8E-27 1E-31 187.7 16.7 121 2-122 83-211 (211)
20 PRK03996 proteasome subunit al 99.9 6.2E-27 1.3E-31 190.4 16.2 125 2-127 94-223 (241)
21 PTZ00246 proteasome subunit al 99.9 8.9E-27 1.9E-31 190.8 16.9 124 2-125 90-219 (253)
22 cd03751 proteasome_alpha_type_ 99.9 8.3E-27 1.8E-31 186.6 15.9 121 1-121 87-212 (212)
23 cd03756 proteasome_alpha_arche 99.9 1.2E-26 2.6E-31 185.2 16.2 121 1-122 85-210 (211)
24 cd03753 proteasome_alpha_type_ 99.9 2E-26 4.3E-31 184.2 15.8 119 2-121 85-213 (213)
25 cd03752 proteasome_alpha_type_ 99.9 2.3E-26 5E-31 183.9 15.8 121 1-121 87-213 (213)
26 KOG0176 20S proteasome, regula 99.9 1E-26 2.2E-31 180.1 13.0 132 2-134 92-234 (241)
27 cd03755 proteasome_alpha_type_ 99.9 3.2E-26 7E-31 182.3 15.6 117 2-121 85-207 (207)
28 cd01906 proteasome_protease_Hs 99.9 8.6E-26 1.9E-30 175.2 15.9 120 2-121 59-182 (182)
29 cd01911 proteasome_alpha prote 99.9 7E-26 1.5E-30 180.5 14.9 119 2-121 85-209 (209)
30 cd03754 proteasome_alpha_type_ 99.9 8.3E-26 1.8E-30 181.1 15.4 120 1-121 86-215 (215)
31 TIGR03691 20S_bact_alpha prote 99.9 1.4E-25 2.9E-30 181.5 15.5 124 2-125 78-211 (228)
32 PF00227 Proteasome: Proteasom 99.9 3.3E-24 7.2E-29 167.4 16.2 121 1-121 63-190 (190)
33 KOG0177 20S proteasome, regula 99.9 6.2E-24 1.3E-28 163.4 12.7 133 1-133 59-195 (200)
34 KOG0181 20S proteasome, regula 99.9 8.8E-24 1.9E-28 163.5 12.4 131 3-134 91-226 (233)
35 KOG0174 20S proteasome, regula 99.9 1.3E-23 2.9E-28 162.3 12.1 129 1-129 77-206 (224)
36 KOG0183 20S proteasome, regula 99.9 4.4E-23 9.5E-28 161.6 11.2 128 2-132 88-224 (249)
37 KOG0179 20S proteasome, regula 99.9 1.8E-22 3.8E-27 157.7 13.4 128 2-129 88-228 (235)
38 KOG0178 20S proteasome, regula 99.9 3.9E-22 8.5E-27 156.0 13.4 127 2-128 90-223 (249)
39 KOG0182 20S proteasome, regula 99.9 6.4E-21 1.4E-25 149.3 13.8 125 2-127 94-226 (246)
40 KOG0180 20S proteasome, regula 99.8 9.3E-20 2E-24 138.8 12.7 126 2-127 67-195 (204)
41 KOG0863 20S proteasome, regula 99.8 1.7E-19 3.7E-24 142.8 13.4 125 1-125 87-219 (264)
42 KOG0185 20S proteasome, regula 99.8 5.8E-20 1.3E-24 145.7 10.6 130 11-140 110-246 (256)
43 KOG0184 20S proteasome, regula 99.8 1.6E-18 3.4E-23 136.7 11.2 122 2-123 92-218 (254)
44 cd01901 Ntn_hydrolase The Ntn 99.8 3E-17 6.6E-22 123.0 13.8 103 1-103 58-163 (164)
45 cd01913 protease_HslV Protease 99.7 2.8E-17 6E-22 127.3 12.3 108 1-120 59-170 (171)
46 PRK05456 ATP-dependent proteas 99.7 4.5E-17 9.8E-22 126.5 11.7 108 1-120 60-171 (172)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.7 1.2E-16 2.5E-21 123.9 11.7 108 1-120 59-170 (171)
48 COG3484 Predicted proteasome-t 98.4 4.9E-07 1.1E-11 71.3 6.2 98 37-135 110-212 (255)
49 PF12465 Pr_beta_C: Proteasome 97.9 5.6E-06 1.2E-10 48.6 1.9 33 135-169 1-35 (38)
50 KOG3361 Iron binding protein i 92.0 0.34 7.3E-06 36.1 4.6 44 54-97 71-114 (157)
51 COG5405 HslV ATP-dependent pro 91.4 0.86 1.9E-05 35.1 6.4 76 37-119 95-173 (178)
52 PF09894 DUF2121: Uncharacteri 88.7 2 4.3E-05 34.0 6.6 50 75-124 131-180 (194)
53 COG4079 Uncharacterized protei 66.0 24 0.00052 29.2 6.2 50 75-124 132-181 (293)
54 COG4245 TerY Uncharacterized p 65.3 12 0.00026 29.7 4.3 53 93-153 22-76 (207)
55 PF03928 DUF336: Domain of unk 63.1 14 0.00031 26.9 4.2 39 87-129 1-39 (132)
56 PRK09732 hypothetical protein; 58.7 28 0.00061 25.9 5.1 37 87-127 5-41 (134)
57 PRK02260 S-ribosylhomocysteina 53.6 67 0.0015 24.7 6.5 60 50-109 71-151 (158)
58 PF08269 Cache_2: Cache domain 53.1 26 0.00056 23.7 3.9 52 76-132 18-73 (95)
59 COG3140 Uncharacterized protei 52.7 40 0.00086 21.3 4.2 37 74-110 13-49 (60)
60 COG3193 GlcG Uncharacterized p 52.0 42 0.0009 25.3 5.0 38 86-127 5-42 (141)
61 PF01592 NifU_N: NifU-like N t 50.7 67 0.0015 23.2 6.0 54 54-107 42-96 (126)
62 COG1754 Uncharacterized C-term 47.6 11 0.00023 31.8 1.4 71 44-119 78-152 (298)
63 COG0822 IscU NifU homolog invo 47.5 84 0.0018 23.8 6.2 49 55-104 48-98 (150)
64 PF11211 DUF2997: Protein of u 47.1 32 0.0007 20.9 3.1 32 54-85 3-34 (48)
65 PRK11325 scaffold protein; Pro 45.7 78 0.0017 23.0 5.6 51 55-105 46-96 (127)
66 PF07499 RuvA_C: RuvA, C-termi 44.8 19 0.00042 21.5 1.9 31 70-100 13-44 (47)
67 cd04513 Glycosylasparaginase G 41.1 1.8E+02 0.004 24.1 7.7 58 67-127 187-248 (263)
68 PF00538 Linker_histone: linke 39.3 56 0.0012 21.4 3.7 40 70-109 20-59 (77)
69 cd04512 Ntn_Asparaginase_2_lik 37.3 2.3E+02 0.005 23.4 7.7 56 66-127 175-234 (248)
70 cd04702 ASRGL1_like ASRGL1_lik 37.0 2.3E+02 0.005 23.6 7.6 56 66-127 178-237 (261)
71 PF05113 DUF693: Protein of un 37.0 93 0.002 26.2 5.3 58 40-99 98-158 (314)
72 PF04485 NblA: Phycobilisome d 35.6 51 0.0011 20.6 2.8 23 87-109 20-42 (53)
73 PF14804 Jag_N: Jag N-terminus 34.2 51 0.0011 20.3 2.7 34 89-129 5-38 (52)
74 TIGR01999 iscU FeS cluster ass 34.1 1.4E+02 0.003 21.5 5.4 51 55-105 44-94 (124)
75 TIGR02000 NifU_proper Fe-S clu 32.9 1.6E+02 0.0035 24.7 6.3 47 55-101 44-91 (290)
76 PF01458 UPF0051: Uncharacteri 32.7 82 0.0018 25.0 4.4 37 63-102 193-229 (229)
77 COG0771 MurD UDP-N-acetylmuram 32.1 38 0.00082 30.4 2.5 63 39-102 346-411 (448)
78 PRK02487 hypothetical protein; 31.4 1.4E+02 0.003 22.6 5.3 36 85-125 19-54 (163)
79 PF14593 PH_3: PH domain; PDB: 27.5 60 0.0013 23.0 2.4 16 49-64 36-51 (104)
80 TIGR02261 benz_CoA_red_D benzo 27.5 85 0.0018 26.1 3.7 51 43-101 104-158 (262)
81 PF05593 RHS_repeat: RHS Repea 26.5 56 0.0012 18.3 1.8 22 50-71 5-26 (38)
82 COG4784 Putative Zn-dependent 26.3 62 0.0013 28.3 2.7 100 76-176 336-440 (479)
83 PF03681 UPF0150: Uncharacteri 25.5 79 0.0017 18.5 2.4 17 90-106 30-46 (48)
84 PRK12413 phosphomethylpyrimidi 23.8 1.3E+02 0.0028 23.9 4.1 40 68-108 203-242 (253)
85 smart00195 DSPc Dual specifici 23.5 1.1E+02 0.0025 21.7 3.4 35 67-101 84-118 (138)
86 cd01262 PH_PDK1 3-Phosphoinosi 23.3 60 0.0013 22.5 1.7 14 49-62 24-37 (89)
87 PF14748 P5CR_dimer: Pyrroline 22.8 1.7E+02 0.0036 20.5 4.0 37 70-106 13-53 (107)
88 COG1577 ERG12 Mevalonate kinas 22.5 4.1E+02 0.0089 22.6 6.9 60 68-131 96-158 (307)
89 KOG2599 Pyridoxal/pyridoxine/p 22.0 5E+02 0.011 22.1 11.3 94 10-108 156-263 (308)
90 PF03701 UPF0181: Uncharacteri 21.3 2.2E+02 0.0047 17.6 4.5 33 75-107 14-46 (51)
91 KOG1930 Focal adhesion protein 21.2 59 0.0013 29.0 1.6 56 81-136 211-280 (483)
92 TIGR03192 benz_CoA_bzdQ benzoy 21.2 1.5E+02 0.0033 25.1 4.0 48 43-98 132-183 (293)
93 PRK12412 pyridoxal kinase; Rev 20.4 1.5E+02 0.0034 24.0 3.9 40 69-109 208-247 (268)
No 1
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=282.12 Aligned_cols=162 Identities=62% Similarity=0.955 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
|+++++++|++++++.++|..+.++++|+|++|+|++++++|+||+|..|||||++.|+|+....+|.++|||+.+|+++
T Consensus 95 m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsv 174 (271)
T KOG0173|consen 95 MISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSV 174 (271)
T ss_pred HHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCccccCCCCCcCCc-ccceeeeee
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKI 159 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (177)
||++|++|||+|||++|+++|+.+++.+|+.||+++++|||++.+++++|+|..|+.+. .|...|+|++ +|+||+++|
T Consensus 175 lEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~~~~-~r~~~y~~~~gtT~VL~~~v 253 (271)
T KOG0173|consen 175 LESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPNEKG-ERTGRYKFKPGTTAVLKEKV 253 (271)
T ss_pred HHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCCCCc-cccceeeeCCCceEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999998 7999999999 999999999
Q ss_pred Eecc
Q 030476 160 TPLR 163 (177)
Q Consensus 160 ~~~~ 163 (177)
.|+.
T Consensus 254 ~~l~ 257 (271)
T KOG0173|consen 254 YPLL 257 (271)
T ss_pred eeee
Confidence 9997
No 2
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-32 Score=213.14 Aligned_cols=131 Identities=69% Similarity=1.090 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF 81 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~L 81 (177)
+|.+++.|+++++++++++.++++++++++.++.+|+|++|+||||.+||+||++||+|++.+++++|+|+|+..++++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L 138 (189)
T cd03763 59 ISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVL 138 (189)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHH
Confidence 78899999999999999999999999999999889999999999998899999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecce
Q 030476 82 ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNH 132 (177)
Q Consensus 82 e~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~ 132 (177)
|++|+++||++||++++++||+.+.+||+.+|++++|++|+++|+++.+||
T Consensus 139 ~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 139 EDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 999999999999999999999999999999999999999999999999987
No 3
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-32 Score=212.88 Aligned_cols=129 Identities=25% Similarity=0.360 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc-ceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~-~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
++|.++++|++++|++|+++.+++++++++|.++.. |++++||||||++||+||++||+|++.+++++|+|+|+..+++
T Consensus 58 ~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~ 137 (188)
T cd03761 58 VLGRECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYG 137 (188)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHH
Confidence 378999999999999999999999999999999765 9999999999998999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+||+.|+++||+|||++++.+||..+++||..+|++++|++|+++|++.+
T Consensus 138 ~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 138 VLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999999999999999999999999999999999999999999753
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.5e-30 Score=205.22 Aligned_cols=129 Identities=24% Similarity=0.307 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---CCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---QGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++|.+++.|+++++++++++.++++++++++.+ +.||++++|+||||. .||+||++||+|++.+++++|+|+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~ 138 (193)
T cd03758 59 YIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYF 138 (193)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHH
Confidence 378999999999999999999999999988654 347999999999996 7899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
++++||+.|+++||+|||++++.+||+.+.+||..++++++|++|+++|++.+
T Consensus 139 ~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 139 CLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 99999999999999999999999999999999999999999999999999864
No 5
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=5.2e-30 Score=201.00 Aligned_cols=128 Identities=30% Similarity=0.427 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
+++.+++.|++.++++++++.+++++++++++++.+|++++||||+|+ +||+||++||+|++.+++++++|+|+..+++
T Consensus 58 ~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~ 137 (188)
T cd03762 58 YVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYG 137 (188)
T ss_pred HHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHH
Confidence 378999999999999999999999999999999888999999999996 7899999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEE
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 128 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~ 128 (177)
+||+.|+++||++||++++++||+.+.+||+.+|++++|++|+++|++.
T Consensus 138 ~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 138 YVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 9999999999999999999999999999999999999999999999874
No 6
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.97 E-value=2.7e-30 Score=211.06 Aligned_cols=134 Identities=23% Similarity=0.308 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc-ceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~-~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
++|.++++|++++|++|+++.++++++++++++|.. +.+++|+||||.+||+||++||+|++.+++++|+|+|+..+++
T Consensus 97 ~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~ 176 (247)
T PTZ00488 97 ELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYG 176 (247)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHH
Confidence 378999999999999999999999999999999865 7778999999998999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
+||+.|+++||.+||++++++||..+.+||..++++++|++|+++|++.+.+.++
T Consensus 177 ~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei 231 (247)
T PTZ00488 177 VLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDC 231 (247)
T ss_pred HHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHH
Confidence 9999999999999999999999999999999999999999999999988866654
No 7
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=4.1e-30 Score=203.01 Aligned_cols=129 Identities=24% Similarity=0.272 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeC-eEEEeCChHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLP-FATMGSGSLAA 77 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~-~~a~G~gs~~a 77 (177)
.+|.+++.|++.+|++|+++.+++++++++|.++ .||++++||||||. .||+||++||+|++..++ ++|+|+|+..+
T Consensus 61 ~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~ 140 (195)
T cd03759 61 KLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQL 140 (195)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHH
Confidence 3789999999999999999999999999998764 46999999999996 569999999999999887 99999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+++||+.|+++||++||++|+++||+.+..||..++++++|++|+++|++..
T Consensus 141 ~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 141 YGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 9999999999999999999999999999999999999999999999998753
No 8
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=5.7e-30 Score=207.71 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHh----cC-------CcceeeEEEEEEeC-CCCeEEEEcCCCceeee--
Q 030476 1 MVSSQLQLHRYHTGR-ESRVVTALTLLKKHLFN----YQ-------GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTL-- 65 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~-~~~v~~~a~~l~~~l~~----~~-------~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~-- 65 (177)
++|.++++|++++|+ +++++.+++++++++++ +. .+|+|++|+||||. .||+||++||+|++.++
T Consensus 61 ~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a 140 (236)
T cd03765 61 LLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATP 140 (236)
T ss_pred HHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecC
Confidence 378999999999999 89999999988876554 44 36999999999995 78999999999999999
Q ss_pred --CeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 66 --PFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 66 --~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
+|+|+|+ +..++++||++|+++||+|||++++++||..++.||..+|++|+|++|+++|.+..+.+.+
T Consensus 141 ~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~ 210 (236)
T cd03765 141 DTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRI 210 (236)
T ss_pred CCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEe
Confidence 5689996 6999999999999999999999999999999999999999999999999999987444444
No 9
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.3e-30 Score=208.64 Aligned_cols=135 Identities=32% Similarity=0.438 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC---cceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG---YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAA 77 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~---~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a 77 (177)
++|.++++|++.+|++|+++.+++++++++++++. ||++++|+||+|.++|+||++||+|++.+++++|+|+|+..|
T Consensus 88 ~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a 167 (236)
T COG0638 88 YARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFA 167 (236)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHHH
Confidence 36889999999999999999999999999999976 799999999999877999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEec-CCeEEecceeCC
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKEYLRNHLLP 135 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k-~g~~~~~~~~~~ 135 (177)
+++||+.|+++|++|||++++++||..+++||..++++++|++|++ +|.+.+.+.++.
T Consensus 168 ~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~ 226 (236)
T COG0638 168 YGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIK 226 (236)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHH
Confidence 9999999999999999999999999999999998999999999999 688887776543
No 10
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.3e-29 Score=198.82 Aligned_cols=128 Identities=35% Similarity=0.462 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
++.+++.|++.++++++++.+++++++++|+++. ||+|++|+||+|.+||+||++||+|++.+++++|+|+|+..++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~ 138 (188)
T cd03764 59 LKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGV 138 (188)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHH
Confidence 6889999999999999999999999999998864 599999999999888999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
||+.|+++|+++||++++++||+.+.+||..++++++|++++++|++.+
T Consensus 139 L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 139 LEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 9999999999999999999999999999999999999999999998765
No 11
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.2e-29 Score=200.62 Aligned_cols=129 Identities=21% Similarity=0.285 Sum_probs=120.5
Q ss_pred HHHHHH-HHHHhhCCCCCHHHHHHHHHHHHHhcC---CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQ-LHRYHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~-~~~~~~g~~~~v~~~a~~l~~~l~~~~---~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
+|.+++ .|++.++.+++++.+++++++++|.++ .||+|++|+||||+ +||+||++||+|++.+++++|+|+|+..
T Consensus 61 ~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~ 140 (197)
T cd03760 61 LDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYL 140 (197)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHH
Confidence 678876 577889999999999999999998765 36999999999997 7899999999999999999999999999
Q ss_pred HHHHHHhhhcC--CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEec
Q 030476 77 AMAMFESKYKE--GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLR 130 (177)
Q Consensus 77 a~~~Le~~~~~--~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~ 130 (177)
++++||+.|++ +||+|||++++.+||..+.+||..++++++|++|+++|++...
T Consensus 141 ~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 196 (197)
T cd03760 141 ALPLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEG 196 (197)
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCC
Confidence 99999999999 9999999999999999999999999999999999999988653
No 12
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.97 E-value=1.7e-29 Score=197.57 Aligned_cols=125 Identities=34% Similarity=0.481 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
++.+++.|++.++++++++.++++++++++.++. ||++++|+||||.+||+||++||+|++.+++++|+|+|+..++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~ 139 (185)
T TIGR03634 60 LKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGV 139 (185)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHH
Confidence 6789999999999999999999999999998854 599999999999989999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 126 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~ 126 (177)
||+.|+++||++||++++++||..+.+||..++++++|++|+++|+
T Consensus 140 Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 140 LEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999999999985
No 13
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.2e-29 Score=201.32 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAM 78 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~ 78 (177)
.+|.+++.|++.+|++++++.+++++++++|.+|. +|++++||||||. ++|+||++||+|++.+++++|+|+|+..++
T Consensus 66 ~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~ 145 (212)
T cd03757 66 RLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQ 145 (212)
T ss_pred HHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHH
Confidence 37899999999999999999999999999998764 6999999999996 569999999999999999999999999999
Q ss_pred HHHHhhhc---------CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 79 AMFESKYK---------EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 79 ~~Le~~~~---------~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
++||+.|+ ++||++||++++.+||+.+.+||+.+|++++|++|+++|++..
T Consensus 146 ~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 146 PLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred HHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 99999986 8999999999999999999999999999999999999998754
No 14
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=8.2e-29 Score=199.86 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc--C---CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY--Q---GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~--~---~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
+|.+++.|++.+|++++++.++++++++++++ + .||++++||||||..||+||++||+|++.+++++|+|+|+..
T Consensus 85 ~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~ 164 (227)
T cd03750 85 ARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSN 164 (227)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECCCCHH
Confidence 78999999999999999999999999988665 2 359999999999988999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecC-CeEEecceeC
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEYLRNHLL 134 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~-g~~~~~~~~~ 134 (177)
++++||++|+++||++||++++++||..+..||+ ++++++|++++++ |.+.+.++++
T Consensus 165 ~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei 222 (227)
T cd03750 165 AKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEI 222 (227)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHH
Confidence 9999999999999999999999999999999887 7899999999995 6887766544
No 15
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=2.2e-28 Score=191.41 Aligned_cols=128 Identities=41% Similarity=0.585 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
++.+++.|++.++++++++.++++++++++.++. ||++++||||+|+ ++|+||++||+|++.+++++|+|+++..+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~ 138 (189)
T cd01912 59 LKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYG 138 (189)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHH
Confidence 6889999999999999999999999999999976 8999999999998 7899999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+||+.|+++||++||++++.+||..+.++|+.++++++|++|+++|++..
T Consensus 139 ~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 139 ILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999999999999999999999999998753
No 16
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.95 E-value=2.3e-27 Score=190.90 Aligned_cols=126 Identities=29% Similarity=0.397 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.++..|++++|++++++.++++++++++.|. .||+|++||||+|.+||+||++||.|++.+++++|+|+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~ 166 (224)
T TIGR03633 87 ARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQA 166 (224)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCCHH
Confidence 678999999999999999999999999986652 369999999999988999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEE
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 128 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~ 128 (177)
++++||+.|+++|+++||++++++||..+.. |+.++++++|++|+++|..+
T Consensus 167 ~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~ 217 (224)
T TIGR03633 167 VTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKF 217 (224)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcE
Confidence 9999999999999999999999999999887 88899999999999998544
No 17
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.95 E-value=1.6e-27 Score=191.46 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC----CcceeeEEEEEEeC--CCCeEEEEcCCC-ceeeeCeEEEeCC
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ----GYVQAALVLGGVDC--TGPHLHTIYPHG-STDTLPFATMGSG 73 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~----~~~gvslIlaG~D~--~gp~Ly~idp~G-s~~~~~~~a~G~g 73 (177)
++|.+++.|+++++++++++.++++++++++++. .+|++++||||||. ++|+||++||+| ++..++++|+|+|
T Consensus 60 ~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g 139 (219)
T TIGR03690 60 LFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSG 139 (219)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEecc
Confidence 3788999999999999999999999999997652 35999999999996 579999999999 5777899999999
Q ss_pred hHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCc-------EEEEEEecCCeEEecceeC
Q 030476 74 SLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN-------VDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 74 s~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~-------vev~vi~k~g~~~~~~~~~ 134 (177)
+..++++||+.|+++||.+||++++++||..+.++|..+++. ++|++|+++|.+.+.+.++
T Consensus 140 ~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei 207 (219)
T TIGR03690 140 SVFAKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESEL 207 (219)
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHH
Confidence 999999999999999999999999999999999999877664 3999999999887755543
No 18
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.7e-28 Score=194.28 Aligned_cols=134 Identities=23% Similarity=0.351 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc-ceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~-~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
+|..||++|++++++.|+|..++++|++++++|+|+ +.+..+|+|||..||.||++|..|+..+-+-.++||||.+|++
T Consensus 129 ~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYG 208 (285)
T KOG0175|consen 129 VLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYG 208 (285)
T ss_pred HHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEE
Confidence 377899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
+|++.|++||+.|||.+|++.||..+..||..||+.|+++.|+++|+..+.+..+
T Consensus 209 VLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv 263 (285)
T KOG0175|consen 209 VLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDV 263 (285)
T ss_pred eeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccH
Confidence 9999999999999999999999999999999999999999999999998877654
No 19
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=4.8e-27 Score=187.70 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~-----~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
+|.++++|+++++++|+++.+++.++.+++++ ..||+|++||||||..||+||++||+|++.+++++|+|+|+..
T Consensus 83 ~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~ 162 (211)
T cd03749 83 MRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARSQS 162 (211)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCcHH
Confidence 78999999999999999999999999877653 2369999999999988999999999999999999999999999
Q ss_pred HHHHHHhhhc--CCCCHHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEe
Q 030476 77 AMAMFESKYK--EGLTKDEGIQLVVDAICSGIFNDL-GSGSNVDVCVIT 122 (177)
Q Consensus 77 a~~~Le~~~~--~~mt~eeai~l~~~al~~~~~~D~-~sg~~vev~vi~ 122 (177)
++++||++|+ ++||++||+++++++|+.++.+|. .++++|||++|+
T Consensus 163 a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 163 ARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999 599999999999999999999886 789999999984
No 20
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.95 E-value=6.2e-27 Score=190.38 Aligned_cols=125 Identities=26% Similarity=0.368 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.+++.|++++|++++++.+++++++.++.|. .||++++||||||..||+||++||+|++.+++++|+|+|+..
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~ 173 (241)
T PRK03996 94 ARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATAIGAGRDT 173 (241)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCcHH
Confidence 688999999999999999999999999886552 259999999999998999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
++++||+.|+++|+++||++++++||..+.+++ .++++++|+|++++|..
T Consensus 174 ~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~-~~~~~i~i~ii~~~~~~ 223 (241)
T PRK03996 174 VMEFLEKNYKEDLSLEEAIELALKALAKANEGK-LDPENVEIAYIDVETKK 223 (241)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEECCCCc
Confidence 999999999999999999999999999998764 57899999999999843
No 21
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.95 E-value=8.9e-27 Score=190.81 Aligned_cols=124 Identities=19% Similarity=0.307 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---CC--cceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---QG--YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~~--~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
+|.+++.|++.++.++++..+++.++..++.| .+ ||+|++||||||+ .||+||++||+|++.+++++|+|+|+.
T Consensus 90 ~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~ 169 (253)
T PTZ00246 90 CRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQ 169 (253)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcH
Confidence 67889999999999999999999988776544 23 5999999999996 789999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 125 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g 125 (177)
.++++||++|+++|+++||++++++||..+..+|..++++++|++|+++|
T Consensus 170 ~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 170 TAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999986
No 22
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=8.3e-27 Score=186.60 Aligned_cols=121 Identities=19% Similarity=0.169 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~-----~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++|.+++.|++++|++++++.++++++++++.| ..||+|++|+||||.+||+||++||+|++.+++++|+|+|+.
T Consensus 87 ~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~ 166 (212)
T cd03751 87 RAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQ 166 (212)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEECCCCH
Confidence 368899999999999999999999999877654 236999999999998899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
.++++||++|+++||++||+++++++|..+++.+...+.++||+++
T Consensus 167 ~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 167 AAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999866556789999874
No 23
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=1.2e-26 Score=185.19 Aligned_cols=121 Identities=26% Similarity=0.415 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
+++.+++.|+++++++++++.++++++.+++.|. .||++++||||||..||+||++||+|++.+++++|+|+|+.
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~g~~ 164 (211)
T cd03756 85 RARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGRQ 164 (211)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECCCCH
Confidence 3688999999999999999999999998876552 25999999999999899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEe
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 122 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~ 122 (177)
.++++||+.|+++||++||++++++||..+..+|. ++++++|++|+
T Consensus 165 ~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 165 AVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 99999999999999999999999999999998887 89999999986
No 24
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=2e-26 Score=184.18 Aligned_cols=119 Identities=22% Similarity=0.343 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC----------CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEe
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ----------GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMG 71 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~----------~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G 71 (177)
+|.+++.|++++|++++++.++++++++++++. .||+|++||||||++||+||++||+|++.+++++|+|
T Consensus 85 ~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~~a~G 164 (213)
T cd03753 85 ARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIG 164 (213)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccEEEEC
Confidence 688999999999999999999999999987652 3599999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 72 SGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 72 ~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
+|+..++++|+++|+++||++||++++++||+.+..++ .++++++|+++
T Consensus 165 ~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 165 SGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred CCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999999999999999999988766 57899999985
No 25
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=2.3e-26 Score=183.88 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---C--CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCCh
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---Q--GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGS 74 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~--~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs 74 (177)
++|.++++|++++|++|+++.++++++.+++.| . .||+|++|++|||. .||+||++||+|++.+++++|+|+|+
T Consensus 87 ~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs 166 (213)
T cd03752 87 YARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNN 166 (213)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCc
Confidence 378999999999999999999999998775443 2 36999999999996 78999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 75 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 75 ~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
..++++||++|+++||++||++++++||..+.+||..++.+++|+++
T Consensus 167 ~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 167 QAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999888999999875
No 26
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-26 Score=180.11 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC----------CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEe
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ----------GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMG 71 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~----------~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G 71 (177)
.|.+|++|+|.||++++|+.+++.++++..+++ .||||++|+||+|+.||+||..||+|++.++++-|+|
T Consensus 92 arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~AKAIG 171 (241)
T KOG0176|consen 92 ARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYKAKAIG 171 (241)
T ss_pred HHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEecceecc
Confidence 478999999999999999999999999988773 2499999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecC-CeEEecceeC
Q 030476 72 SGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEYLRNHLL 134 (177)
Q Consensus 72 ~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~-g~~~~~~~~~ 134 (177)
+|+..|.+.|++.|+++||++||+.+++..|+.+++..+. .+|++++++++. +.+++.|.++
T Consensus 172 SgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~-~~Nvev~~vt~e~~f~~~t~EE~ 234 (241)
T KOG0176|consen 172 SGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLN-SNNVEVAVVTPEGEFHIYTPEEV 234 (241)
T ss_pred ccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcC-ccceEEEEEcccCceEecCHHHH
Confidence 9999999999999999999999999999999999987764 589999999997 5777766544
No 27
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=3.2e-26 Score=182.31 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
+|.+++.|++++|++|+++.+++++++++++|. .||+|++|+||||. .||+||++||+|++.+++++|+|+|+.
T Consensus 85 ~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~ 164 (207)
T cd03755 85 ARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSK 164 (207)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCH
Confidence 789999999999999999999999999986552 26999999999997 589999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
.++++||++|+++||++||++++++||..+++ .+++++||+++
T Consensus 165 ~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 165 TVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 99999999999999999999999999999986 57899999985
No 28
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.94 E-value=8.6e-26 Score=175.23 Aligned_cols=120 Identities=34% Similarity=0.507 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC---CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAA 77 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~---~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a 77 (177)
++.++..|++++|++++++.++++++++++.++ .+|++++|+||+|. .||+||.+||+|++.+++++|+|+|+..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~ 138 (182)
T cd01906 59 LRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYA 138 (182)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHH
Confidence 688999999999999999999999999999987 57999999999997 78999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
+++||+.|+++||.+||++++++||..+.++|..++.+++|++|
T Consensus 139 ~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 139 LGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999999999999999999999989999999875
No 29
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.94 E-value=7e-26 Score=180.47 Aligned_cols=119 Identities=25% Similarity=0.370 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCC-CCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~-gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++.+++.|++++|++++++.+++++++++++|. .|+++++||||||.+ ||+||++||.|++.+++++++|+|+.
T Consensus 85 l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~ 164 (209)
T cd01911 85 ARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQ 164 (209)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcH
Confidence 678999999999999999999999999886552 269999999999975 89999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
.++++||+.|+++|+++||++++++||..+..||+ +++.++|+++
T Consensus 165 ~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 165 EAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 99999999999999999999999999999999999 9999999885
No 30
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=8.3e-26 Score=181.08 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH---hcCC--cceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCCh
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLF---NYQG--YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGS 74 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~---~~~~--~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs 74 (177)
.+|.++++|+++++++++++.++++++++++ ++.+ ||++++|+||||. +||+||++||+|++.+++++|+|+|+
T Consensus 86 ~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs 165 (215)
T cd03754 86 RARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKE 165 (215)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCc
Confidence 3789999999999999999999999998643 3333 6999999999996 78999999999999999999999999
Q ss_pred HHHHHHHHhhhcCC--C--CHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 75 LAAMAMFESKYKEG--L--TKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 75 ~~a~~~Le~~~~~~--m--t~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
..++++||++|+++ | |+|||++++++||..+.+||.. ++++||+|+
T Consensus 166 ~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 166 QEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 99999999999995 7 9999999999999999999975 899999985
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.94 E-value=1.4e-25 Score=181.46 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhc----CCcceeeEEEEEEeC--CCCeEEEEcCCCceeeeC-eEEEeCC
Q 030476 2 VSSQLQLHRYHTG-RESRVVTALTLLKKHLFNY----QGYVQAALVLGGVDC--TGPHLHTIYPHGSTDTLP-FATMGSG 73 (177)
Q Consensus 2 lr~e~~~~~~~~g-~~~~v~~~a~~l~~~l~~~----~~~~gvslIlaG~D~--~gp~Ly~idp~Gs~~~~~-~~a~G~g 73 (177)
++.+++.|++.++ .+++++.+++.++|.+..+ ..||+|++|+||||+ .||+||++||+|++.+++ ++|+|+|
T Consensus 78 ~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~g 157 (228)
T TIGR03691 78 GIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGT 157 (228)
T ss_pred HHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCC
Confidence 4678899999998 6899999999888877642 357999999999984 689999999999999976 8999999
Q ss_pred hHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhh--ccCCCCCcEEEEEEecCC
Q 030476 74 SLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF--NDLGSGSNVDVCVITKGH 125 (177)
Q Consensus 74 s~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~--~D~~sg~~vev~vi~k~g 125 (177)
+..++++||++|+++||+|||++|+++||..+++ +|..++.++||+++++++
T Consensus 158 s~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 158 TEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 9999999999999999999999999999999964 666788999999999865
No 32
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.92 E-value=3.3e-24 Score=167.37 Aligned_cols=121 Identities=30% Similarity=0.417 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHH----HHHhc-CCcceeeEEEEEEeCCC-CeEEEEcCCCceeee-CeEEEeCC
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKK----HLFNY-QGYVQAALVLGGVDCTG-PHLHTIYPHGSTDTL-PFATMGSG 73 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~----~l~~~-~~~~gvslIlaG~D~~g-p~Ly~idp~Gs~~~~-~~~a~G~g 73 (177)
+++.+++.|++.++++++++.+++.+++ .++.. +.++++++|+||+|+.| |+||.+||+|++.++ +++|+|+|
T Consensus 63 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g 142 (190)
T PF00227_consen 63 RLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSG 142 (190)
T ss_dssp HHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTT
T ss_pred hhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhc
Confidence 3788999999999999999965555443 33332 45699999999999865 999999999999999 69999999
Q ss_pred hHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 74 SLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 74 s~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
+..++++||+.|+++||++||++++.+||+.+.++|..++++++|+||
T Consensus 143 ~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 143 SQFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred chhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999999999999999999999986
No 33
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.2e-24 Score=163.42 Aligned_cols=133 Identities=20% Similarity=0.251 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---CCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---QGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
|++.++++|++++|.++++..++++.++.+..+ +.+|.|++|+||+|. .||.||++|.-|+..+.++++.|.|+.+
T Consensus 59 yi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f 138 (200)
T KOG0177|consen 59 YIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYF 138 (200)
T ss_pred HHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhh
Confidence 578999999999999999999999999999866 456999999999998 6899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEeccee
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHL 133 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~ 133 (177)
+.++|++.|+||||.|||+++..+|+..+-.|-...-.++.|.||+|||++.+....
T Consensus 139 ~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~i~ 195 (200)
T KOG0177|consen 139 CLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDDIN 195 (200)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccccc
Confidence 999999999999999999999999999999998777789999999999999876553
No 34
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.8e-24 Score=163.47 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=119.3
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---CC--cceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHH
Q 030476 3 SSQLQLHRYHTGRESRVVTALTLLKKHLFNY---QG--YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAA 77 (177)
Q Consensus 3 r~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~~--~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a 77 (177)
|..++.|...|+++||+..+++.++..++.| .| +||++++++|||.++|.||++||+|++..|+++|+|.+...+
T Consensus 91 rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~a 170 (233)
T KOG0181|consen 91 RKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVNA 170 (233)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhhccCcchH
Confidence 6678889999999999999999988777655 44 499999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
..+||++|+++|.+++|+..++-.|+...+... +.+++||+++..++.+.+.+-++
T Consensus 171 ktFlEkR~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~F~~lt~~eI 226 (233)
T KOG0181|consen 171 KTFLEKRYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFRRLTPAEI 226 (233)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCceeecCHHHH
Confidence 999999999999999999999999999998876 46899999999988887765443
No 35
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-23 Score=162.28 Aligned_cols=129 Identities=27% Similarity=0.401 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
+++..+..|....+.++.|...++.++++.|+|+..+.+.+|+||||+ .|.++|.+-..|+..+.++..-||||.++++
T Consensus 77 ~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYG 156 (224)
T KOG0174|consen 77 IVRYHLELYTIQENKPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYG 156 (224)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeee
Confidence 367889999999999999999999999999999999999999999998 7899999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+++..|+++||+||+++++.+|+..++.||-.||+.|.+.+|+++|++..
T Consensus 157 f~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~ 206 (224)
T KOG0174|consen 157 FCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERR 206 (224)
T ss_pred eehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEE
Confidence 99999999999999999999999999999999999999999999999843
No 36
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.4e-23 Score=161.61 Aligned_cols=128 Identities=23% Similarity=0.328 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCcceeeEEEEEEeCCC-CeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTG-PHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~-----~~~~gvslIlaG~D~~g-p~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
.|.||+.|+++.+.+++++.++++++++-++| +.|||++.+++|+|++| |+||++||+|.+.+|++.|+|.++.
T Consensus 88 ArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk 167 (249)
T KOG0183|consen 88 ARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSK 167 (249)
T ss_pred HhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccH
Confidence 47899999999999999999999999777666 23599999999999976 9999999999999999999999999
Q ss_pred HHHHHHHhhhcCC--CCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC-eEEecce
Q 030476 76 AAMAMFESKYKEG--LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNH 132 (177)
Q Consensus 76 ~a~~~Le~~~~~~--mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g-~~~~~~~ 132 (177)
.+..+||++|.++ .|..++++|++++|..+...+ +++++++|+++++ .+++...
T Consensus 168 ~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~l~~~ 224 (249)
T KOG0183|consen 168 TVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKMLESE 224 (249)
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceeecCHH
Confidence 9999999999987 788999999999999988753 5899999999987 6666443
No 37
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-22 Score=157.68 Aligned_cols=128 Identities=22% Similarity=0.339 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc-ceeeEEEEEEeCCC-CeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTG-PHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~-~gvslIlaG~D~~g-p~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
|+++++.|++.+++.|++..+|++|+.+||.+|.+ |++..||||+|+.| +.+|+.||.|++.+..+.|.|+++..+++
T Consensus 88 i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~P 167 (235)
T KOG0179|consen 88 IKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQP 167 (235)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhh
Confidence 67889999999999999999999999999999975 99999999999955 99999999999999999999999999999
Q ss_pred HHHhhhc-----------CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 80 MFESKYK-----------EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 80 ~Le~~~~-----------~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+|++... ..||+|+|+.|+.+++..|.+||+..|+.++|+|++++|++..
T Consensus 168 fLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e 228 (235)
T KOG0179|consen 168 FLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVE 228 (235)
T ss_pred hhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEE
Confidence 9996542 3589999999999999999999999999999999999998753
No 38
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.9e-22 Score=155.97 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHH---HHHHhcCC--cceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLK---KHLFNYQG--YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~---~~l~~~~~--~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
+|..+|.|.+++|.++|++.++..++ |-++||.| |||||+|.+|||. .|.+||+.||+|++..|++.++|..+.
T Consensus 90 aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~ 169 (249)
T KOG0178|consen 90 ARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSG 169 (249)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchH
Confidence 68889999999999999999988776 55678876 4999999999998 689999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCC-HHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEE
Q 030476 76 AAMAMFESKYKEGLT-KDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 128 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt-~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~ 128 (177)
+|+++|...|+++.+ ++||..+|++.|...++.+..+...+|++.++++..+-
T Consensus 170 Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 170 AAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT 223 (249)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence 999999999998755 99999999999999999888888999999999987664
No 39
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.4e-21 Score=149.26 Aligned_cols=125 Identities=25% Similarity=0.279 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHH---HHhcCC--cceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKH---LFNYQG--YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~---l~~~~~--~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
+|.++.+++|+||.+||++.|+++++++ ++|+.. ++||.+++.|+|+ .||.+|.+||.|.+..++++|.|....
T Consensus 94 ar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~ 173 (246)
T KOG0182|consen 94 ARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQ 173 (246)
T ss_pred HHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchh
Confidence 5789999999999999999999987644 455533 4999999999998 789999999999999999999999999
Q ss_pred HHHHHHHhhhcCC--CCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 76 AAMAMFESKYKEG--LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 76 ~a~~~Le~~~~~~--mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
.+.++||++|+++ +|.+|++++++.||..++.-|..+ +.+||++++++..+
T Consensus 174 e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~p~ 226 (246)
T KOG0182|consen 174 EATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKS-SELEVGVVTVDNPE 226 (246)
T ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCCcc
Confidence 9999999999987 789999999999999999999864 89999999998753
No 40
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.3e-20 Score=138.76 Aligned_cols=126 Identities=22% Similarity=0.270 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-CcceeeEEEEEEeC-CCCeEEEEcCCCceeee-CeEEEeCChHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTL-PFATMGSGSLAAM 78 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~-~~~a~G~gs~~a~ 78 (177)
++...++|+++.++.|.++.+++++|.++|++| ++|.+..++||.|+ +.|.+...|..|....- +|++.|.++...+
T Consensus 67 ~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~ 146 (204)
T KOG0180|consen 67 LRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLY 146 (204)
T ss_pred HHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHH
Confidence 677889999999999999999999999999998 56889999999998 45999999999999874 8999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 79 AMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 79 ~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
+++|..|+|||..|+..+.+.+||..+.+||+.||....+.+|+||++.
T Consensus 147 GmCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 147 GMCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 9999999999999999999999999999999999999999999999875
No 41
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-19 Score=142.83 Aligned_cols=125 Identities=22% Similarity=0.275 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHH---Hhc--CCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHL---FNY--QGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l---~~~--~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
+||.||..+++.+++++++..+...|.+-+ +|+ |.+|||.++++|+|+.|||||+++|+|.+.++++.+||+.|+
T Consensus 87 Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQ 166 (264)
T KOG0863|consen 87 YLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQ 166 (264)
T ss_pred HHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchh
Confidence 589999999999999999999988876544 344 446999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc--CCCCHHHHHHHHHHHHHHhhhcc-CCCCCcEEEEEEecCC
Q 030476 76 AAMAMFESKYK--EGLTKDEGIQLVVDAICSGIFND-LGSGSNVDVCVITKGH 125 (177)
Q Consensus 76 ~a~~~Le~~~~--~~mt~eeai~l~~~al~~~~~~D-~~sg~~vev~vi~k~g 125 (177)
.|..+||++.. .+++.||.+..++.||+..+-.| ...+.+++|.|+.+|.
T Consensus 167 sARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~ 219 (264)
T KOG0863|consen 167 SARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE 219 (264)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence 99999999886 48999999999999999988643 5577999999999985
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.8e-20 Score=145.69 Aligned_cols=130 Identities=18% Similarity=0.288 Sum_probs=122.8
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhcCC---cceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHHHHHHhhhc
Q 030476 11 YHTGRESRVVTALTLLKKHLFNYQG---YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 86 (177)
Q Consensus 11 ~~~g~~~~v~~~a~~l~~~l~~~~~---~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~ 86 (177)
+..|+.+.++.+..+|.+.||++|+ |++..++|||+|. +.|.|-.+|.-|..++.+..|+|.|...|.++|++.|.
T Consensus 110 ~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~ 189 (256)
T KOG0185|consen 110 LDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWE 189 (256)
T ss_pred cccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhh
Confidence 4455899999999999999999876 4999999999999 45999999999999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCccc
Q 030476 87 ---EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTF 140 (177)
Q Consensus 87 ---~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~ 140 (177)
++++.+||..++.+||+....||+.+.+.++|++|+++|+++..||++.++|.|
T Consensus 190 ~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~f 246 (256)
T KOG0185|consen 190 KKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWDF 246 (256)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecchh
Confidence 479999999999999999999999999999999999999999999999999997
No 43
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-18 Score=136.71 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
+|.|+..|+-+|+.++|...++.+++++++-+. .+|||+.|+++||.+||+||.+||+|.+++++++|+|.|.+.
T Consensus 92 ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~ 171 (254)
T KOG0184|consen 92 ARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQA 171 (254)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHH
Confidence 588999999999999999999999999988663 259999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEec
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 123 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k 123 (177)
|...||+.--++|+.+|+++-+.+.|..+-+......-.+|+.|+..
T Consensus 172 aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~ 218 (254)
T KOG0184|consen 172 AKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGE 218 (254)
T ss_pred HHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEe
Confidence 99999999888999999999999999887654332223578899875
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.75 E-value=3e-17 Score=123.04 Aligned_cols=103 Identities=30% Similarity=0.347 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC--CcceeeEEEEEEeCCCCeEEEEcCCCceeee-CeEEEeCChHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ--GYVQAALVLGGVDCTGPHLHTIYPHGSTDTL-PFATMGSGSLAA 77 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~--~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~-~~~a~G~gs~~a 77 (177)
+++.+++.|++.+++++++..+++.+++.++.++ .++++++|+||+|.++|+||.+||+|++..+ .++++|+++..+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~ 137 (164)
T cd01901 58 RLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRA 137 (164)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHH
Confidence 3688999999999999999999999999999875 4599999999999988999999999999999 999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHH
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAIC 103 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~ 103 (177)
.++|++.|+++|+++||++++.+||.
T Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 138 KSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999985
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.74 E-value=2.8e-17 Score=127.32 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-HhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeC--eEEEeCChHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHL-FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLP--FATMGSGSLAA 77 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l-~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~--~~a~G~gs~~a 77 (177)
+++.++++|+++.++ .+++++++++ ++++.++.+.+|++++ ++||.+||.|+..+.+ +.++||||.+|
T Consensus 59 ~~~~~~~~y~~~~~~-----~aa~l~~~l~~~~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya 129 (171)
T cd01913 59 RFEAKLEQYPGNLLR-----AAVELAKDWRTDRYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYA 129 (171)
T ss_pred HHHHHHHHhhchHHH-----HHHHHHHHHHhccCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHH
Confidence 478999999999884 4566655553 4555556677777655 3999999999999984 99999999999
Q ss_pred HHHHHhhhcCC-CCHHHHHHHHHHHHHHhhhccCCCCCcEEEEE
Q 030476 78 MAMFESKYKEG-LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120 (177)
Q Consensus 78 ~~~Le~~~~~~-mt~eeai~l~~~al~~~~~~D~~sg~~vev~v 120 (177)
+++||.+|+++ || +.++|++|++.+++||..||++++|-.
T Consensus 130 ~g~ld~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 130 LAAARALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 99999999995 99 559999999999999999999998753
No 46
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.73 E-value=4.5e-17 Score=126.52 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-HhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeee--CeEEEeCChHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHL-FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTL--PFATMGSGSLAA 77 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l-~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~--~~~a~G~gs~~a 77 (177)
+++.++++|+... ++.+++..+.+. +.++.++.+.+|++ | .|+||.+||.|++.+. ++.|+|||+.++
T Consensus 60 ~l~~~~~~y~~~~-----~~~~a~l~~~l~~~~~~~~l~~~~lv~--d--~~~ly~id~~G~~~~~~~~~~a~GSGs~~a 130 (172)
T PRK05456 60 RFEAKLEEHQGNL-----LRAAVELAKDWRTDRYLRRLEAMLIVA--D--KEHSLIISGNGDVIEPEDGIIAIGSGGNYA 130 (172)
T ss_pred HHHHHHHHccCcc-----HHHHHHHHHHHHhccCCCccEEEEEEE--c--CCcEEEECCCCcEeccCCCeEEEecCHHHH
Confidence 3678888888322 466666554442 33444577999984 3 3799999999999776 799999999999
Q ss_pred HHHHHhhhc-CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEE
Q 030476 78 MAMFESKYK-EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120 (177)
Q Consensus 78 ~~~Le~~~~-~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~v 120 (177)
+++||+.|+ ++| ||++|+++|+..+.+||..||++++|-.
T Consensus 131 ~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 131 LAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999 999 9999999999999999999999998754
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.71 E-value=1.2e-16 Score=123.86 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeee--CeEEEeCChHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKH-LFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTL--PFATMGSGSLAA 77 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~-l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~--~~~a~G~gs~~a 77 (177)
+++.++++|++.. .+.+++.++++ .+++..++.+.+|++|+ ++||.+||.|++.+. ++.++||||.+|
T Consensus 59 ~~~~~~~~y~~~~-----~~~~a~l~~~~~~~~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a 129 (171)
T TIGR03692 59 RFEAKLEEYQGNL-----TRAAVELAKDWRTDRYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYA 129 (171)
T ss_pred HHHHHHHHccCch-----HHHHHHHHHHHhhcccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHH
Confidence 4788888888754 46777777774 24444446677777654 499999999999996 699999999999
Q ss_pred HHHHHhhhc-CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEE
Q 030476 78 MAMFESKYK-EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120 (177)
Q Consensus 78 ~~~Le~~~~-~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~v 120 (177)
+++||..|+ ++|+ |+++|++|++.+++||..||++++|-.
T Consensus 130 ~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 130 LAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999994 7777 999999999999999999999998753
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.9e-07 Score=71.26 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=87.5
Q ss_pred ceeeEEEEEEeCCC-CeEEEEcCCCceee----eCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCC
Q 030476 37 VQAALVLGGVDCTG-PHLHTIYPHGSTDT----LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLG 111 (177)
Q Consensus 37 ~gvslIlaG~D~~g-p~Ly~idp~Gs~~~----~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~ 111 (177)
|.|++|+||.-.++ |.||.|.|.|++.+ .+|.-+|. +.+-.++|++.+..++++|||.+++.-++...+..++.
T Consensus 110 fn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiS 188 (255)
T COG3484 110 FNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNIS 188 (255)
T ss_pred eeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhcccc
Confidence 99999999997755 89999999999997 37999998 46788999999999999999999999999999999998
Q ss_pred CCCcEEEEEEecCCeEEecceeCC
Q 030476 112 SGSNVDVCVITKGHKEYLRNHLLP 135 (177)
Q Consensus 112 sg~~vev~vi~k~g~~~~~~~~~~ 135 (177)
.|-.+++.++.+|....-+.+++.
T Consensus 189 VGlPldLl~~e~ds~~v~~~~ri~ 212 (255)
T COG3484 189 VGLPLDLLVYEADSFSVRHTLRIR 212 (255)
T ss_pred ccCCceeEEEeccceeeeeeeEec
Confidence 999999999999987766666553
No 49
>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []. This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....
Probab=97.93 E-value=5.6e-06 Score=48.55 Aligned_cols=33 Identities=36% Similarity=0.619 Sum_probs=11.8
Q ss_pred CCCccccCCCCCcCCc-ccceeeeeeEecc-eeeeee
Q 030476 135 PNPRTFVNAKGYSFPK-KTEVLLTKITPLR-ERVEVV 169 (177)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 169 (177)
||.++ .++.+|+|++ ||+||+++| ++. ++++++
T Consensus 1 pN~kg-~r~~~Ykf~~GTTaVL~e~V-~~~~~v~eE~ 35 (38)
T PF12465_consen 1 PNEKG-ERQGSYKFKRGTTAVLKEKV-PLKLDVVEET 35 (38)
T ss_dssp TT------SS-----TT-S-EEEEEE-E---------
T ss_pred CCcCc-ccccccccCCCceeeEEEEe-ccEeEEEEEE
Confidence 67888 7999999999 999999999 554 555543
No 50
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=91.99 E-value=0.34 Score=36.15 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=41.0
Q ss_pred EEEcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHH
Q 030476 54 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQL 97 (177)
Q Consensus 54 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l 97 (177)
..+|-+|.....+|-+.|-||..|-+.+-..|-.++|+|||..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 57889999999999999999999999999999999999999764
No 51
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.86 Score=35.14 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=52.8
Q ss_pred ceeeEEEEEEeCCCCeEEEEcCCCceeee--CeEEEeCChHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHhhhccCCCC
Q 030476 37 VQAALVLGGVDCTGPHLHTIYPHGSTDTL--PFATMGSGSLAAMAMFESKYKE-GLTKDEGIQLVVDAICSGIFNDLGSG 113 (177)
Q Consensus 37 ~gvslIlaG~D~~gp~Ly~idp~Gs~~~~--~~~a~G~gs~~a~~~Le~~~~~-~mt~eeai~l~~~al~~~~~~D~~sg 113 (177)
+-+-++++ | .-+++-+.-.|...+- ...|||||..+|++.....++. ++| |.+++.++|..+.+-+..+.
T Consensus 95 LEAmllVa--d--~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN 167 (178)
T COG5405 95 LEAMLLVA--D--KTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTN 167 (178)
T ss_pred HhhheeEe--C--CCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecC
Confidence 44445554 3 3467778788888763 5999999999999988887764 555 55678888887765555555
Q ss_pred CcEEEE
Q 030476 114 SNVDVC 119 (177)
Q Consensus 114 ~~vev~ 119 (177)
.++.|-
T Consensus 168 ~ni~ve 173 (178)
T COG5405 168 HNIVVE 173 (178)
T ss_pred CcEEEE
Confidence 555443
No 52
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=88.73 E-value=2 Score=33.97 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecC
Q 030476 75 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 124 (177)
Q Consensus 75 ~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~ 124 (177)
+.|...|.++|++.|+++++..+..++|..+.......+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 67788999999999999999999999999987665555577888766543
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.99 E-value=24 Score=29.20 Aligned_cols=50 Identities=4% Similarity=0.084 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecC
Q 030476 75 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 124 (177)
Q Consensus 75 ~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~ 124 (177)
+.+..+|.++|.+.++++++.++...+|..+...-..-++.+++...+++
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 45677899999999999999999999999987555555577888777654
No 54
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=65.27 E-value=12 Score=29.72 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC-eEEecceeCCCCccccCCCCCcCCc-ccc
Q 030476 93 EGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLLPNPRTFVNAKGYSFPK-KTE 153 (177)
Q Consensus 93 eai~l~~~al~~~~~~D~~sg~~vev~vi~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (177)
||++..++.|...+..|...-..+++.||+-+| .+...|+ ..-.+|.+|+ ++.
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf--------~~~~nF~~p~L~a~ 76 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPF--------TDAANFNPPILTAQ 76 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEech--------hhHhhcCCCceecC
Confidence 678888888888888888877899999999886 4445454 3446677776 443
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=63.11 E-value=14 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 87 EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 87 ~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
|.+|.++|.+++..++..+.++. -++.|+|++..|....
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-EEE
T ss_pred CCcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCCEEE
Confidence 34789999999999999988653 4689999999996654
No 56
>PRK09732 hypothetical protein; Provisional
Probab=58.69 E-value=28 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 87 EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 87 ~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
+.||++.|.+++..++..+.+. |.++.|+|++..|.-
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l 41 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHL 41 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCE
Confidence 4689999999999999998864 468999999998854
No 57
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=53.60 E-value=67 Score=24.68 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCceeeeCeEEEe-CChHHHHHHHHhhhc--------------------CCCCHHHHHHHHHHHHHHhhhc
Q 030476 50 GPHLHTIYPHGSTDTLPFATMG-SGSLAAMAMFESKYK--------------------EGLTKDEGIQLVVDAICSGIFN 108 (177)
Q Consensus 50 gp~Ly~idp~Gs~~~~~~~a~G-~gs~~a~~~Le~~~~--------------------~~mt~eeai~l~~~al~~~~~~ 108 (177)
+-.+..+.|-|..........| ..+..+...+++.++ .+++++.|...|.+.|...+..
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4567888899999999999999 677777777776543 2679999999999999877654
Q ss_pred c
Q 030476 109 D 109 (177)
Q Consensus 109 D 109 (177)
+
T Consensus 151 ~ 151 (158)
T PRK02260 151 N 151 (158)
T ss_pred C
Confidence 3
No 58
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=53.09 E-value=26 Score=23.71 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHhhhc----CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecce
Q 030476 76 AAMAMFESKYK----EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNH 132 (177)
Q Consensus 76 ~a~~~Le~~~~----~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~ 132 (177)
.+.++++..+. ..+|.+||.+.++++|..... ++.=-+.+++.+|+...-|.
T Consensus 18 ~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l~hp~ 73 (95)
T PF08269_consen 18 SAISLIESYYAQAQAGKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVLAHPS 73 (95)
T ss_dssp HHHHHTHHHHHC-STT-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEEEESS
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEEEcCC
Confidence 34455554443 369999999999999987654 22235678899998877554
No 59
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.74 E-value=40 Score=21.29 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccC
Q 030476 74 SLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDL 110 (177)
Q Consensus 74 s~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~ 110 (177)
.+.|..-+.+....+||--||+.++.+.|+.--..|.
T Consensus 13 QQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 13 QQKAVERIQELMAEGMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHhcccc
Confidence 3455666777777899999999999999998766554
No 60
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=52.01 E-value=42 Score=25.32 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=31.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 86 KEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 86 ~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
++.+|++.|.+++..++..+.+. +.+|.+.|++..|--
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~ 42 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHL 42 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCE
Confidence 35789999999999999988753 679999999998843
No 61
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=50.70 E-value=67 Score=23.20 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=42.8
Q ss_pred EEEcCC-CceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhh
Q 030476 54 HTIYPH-GSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 107 (177)
Q Consensus 54 y~idp~-Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~ 107 (177)
..+|.+ |.....+|.+.|-+...|-+-+=..+-.++|.+||..+..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 567887 788888999999887777776666667799999998887776766553
No 62
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=47.56 E-value=11 Score=31.78 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=45.3
Q ss_pred EEEeC-CC-CeEEEEcCCCceeeeCeEEEeCC-hHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 030476 44 GGVDC-TG-PHLHTIYPHGSTDTLPFATMGSG-SLAAMAMFESKYKE-GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVC 119 (177)
Q Consensus 44 aG~D~-~g-p~Ly~idp~Gs~~~~~~~a~G~g-s~~a~~~Le~~~~~-~mt~eeai~l~~~al~~~~~~D~~sg~~vev~ 119 (177)
.|.|+ .| +-.......|-|... ..|.. -....+.|-+.|.+ ++|+|+|++|..- -..+..+..+|..|.+.
T Consensus 78 LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsL--PR~iG~hp~sge~I~ag 152 (298)
T COG1754 78 LGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSL--PRVIGKHPDSGEEISAG 152 (298)
T ss_pred cccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcC--chhhCCCCCCCcEEEec
Confidence 46775 44 556666677777654 45655 55666677788886 7999999988643 33333444455566553
No 63
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=47.46 E-value=84 Score=23.75 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=39.9
Q ss_pred EEcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHH--HHHHHH
Q 030476 55 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLV--VDAICS 104 (177)
Q Consensus 55 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~--~~al~~ 104 (177)
.+| .|......|-..|-+...|-+-+-..+=.+.|.+||+++. ...+..
T Consensus 48 kv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 48 KVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 355 8888888999999988888888888888899999999998 444443
No 64
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=47.14 E-value=32 Score=20.91 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=26.2
Q ss_pred EEEcCCCceeeeCeEEEeCChHHHHHHHHhhh
Q 030476 54 HTIYPHGSTDTLPFATMGSGSLAAMAMFESKY 85 (177)
Q Consensus 54 y~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~ 85 (177)
|.|+|+|.....--...|+....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999998888888888888877777643
No 65
>PRK11325 scaffold protein; Provisional
Probab=45.70 E-value=78 Score=23.03 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=40.2
Q ss_pred EEcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 030476 55 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSG 105 (177)
Q Consensus 55 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~ 105 (177)
.+|++|......|.+.|-+...|-+.+=..+-.+.|++||..+..+.+...
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~ 96 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEE 96 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHH
Confidence 566678888889999998877777776667777999999999988766543
No 66
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=44.84 E-value=19 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=22.2
Q ss_pred EeCChHHHHHHHHhhh-cCCCCHHHHHHHHHH
Q 030476 70 MGSGSLAAMAMFESKY-KEGLTKDEGIQLVVD 100 (177)
Q Consensus 70 ~G~gs~~a~~~Le~~~-~~~mt~eeai~l~~~ 100 (177)
.|.....+...+.+-. .++++.++.++.+.+
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 4777778888888776 788999887776654
No 67
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=41.15 E-value=1.8e+02 Score=24.14 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=40.3
Q ss_pred eEEEeCChHHHHHHHHh----hhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 67 FATMGSGSLAAMAMFES----KYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 67 ~~a~G~gs~~a~~~Le~----~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
..++|.|...+...+-. +.+..++++||.+.+++-+..... ..+...-+..++++|..
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCE
Confidence 56889998887765542 344689999999988877655332 12345677788888754
No 68
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=39.34 E-value=56 Score=21.43 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=32.1
Q ss_pred EeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhcc
Q 030476 70 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFND 109 (177)
Q Consensus 70 ~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D 109 (177)
.|+....+..+|+.+|.-+.+....-.++..+|+.+..+.
T Consensus 20 ~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G 59 (77)
T PF00538_consen 20 KGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKG 59 (77)
T ss_dssp SSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCC
Confidence 3677889999999999767777667788888998888643
No 69
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=37.27 E-value=2.3e+02 Score=23.36 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=39.5
Q ss_pred CeEEEeCChHHHHHHHHh----hhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 66 PFATMGSGSLAAMAMFES----KYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 66 ~~~a~G~gs~~a~~~Le~----~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
-..++|.|...+...+-. +.+..+++++|.+.+++-|... .+...-+..++++|..
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGEF 234 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCCE
Confidence 477889998888776553 4456799999998887776543 1234567777888753
No 70
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=37.04 E-value=2.3e+02 Score=23.59 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=39.0
Q ss_pred CeEEEeCChHHHHHHHHh----hhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 66 PFATMGSGSLAAMAMFES----KYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 66 ~~~a~G~gs~~a~~~Le~----~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
-..++|.|...+...+-. +.+..++++||.+.+++-+.... +...-+..++++|..
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~~ 237 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGEV 237 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCCE
Confidence 367899998888775553 44568999999998887765432 234566677888743
No 71
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=37.02 E-value=93 Score=26.23 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=41.0
Q ss_pred eEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHH---HhhhcCCCCHHHHHHHHH
Q 030476 40 ALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF---ESKYKEGLTKDEGIQLVV 99 (177)
Q Consensus 40 slIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~L---e~~~~~~mt~eeai~l~~ 99 (177)
.+|.+|+ -|+-+-..-|+|.+.-.--.-.=+.+.+...-| +..-.++||.++|++.|.
T Consensus 98 ~FImaGy--Lg~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~svF 158 (314)
T PF05113_consen 98 DFIMAGY--LGAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSVF 158 (314)
T ss_pred cEEeecc--cCCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHhC
Confidence 4677887 366566666888888766666667777777777 444446889998888763
No 72
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=35.65 E-value=51 Score=20.60 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcc
Q 030476 87 EGLTKDEGIQLVVDAICSGIFND 109 (177)
Q Consensus 87 ~~mt~eeai~l~~~al~~~~~~D 109 (177)
.+||.|+|.++.++.++..+-+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988877655
No 73
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=34.17 E-value=51 Score=20.30 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 89 LTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 89 mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
-|.|||++.|++-|.. +.+.+++-||.+...-++
T Consensus 5 kt~eeAi~~A~~~l~~-------~~~~~~~eVi~~g~kGf~ 38 (52)
T PF14804_consen 5 KTVEEAIEKALKELGV-------PREELEYEVIEEGKKGFF 38 (52)
T ss_dssp SSHHHHHHHHHHHTT---------GGGEEEEEEE--B----
T ss_pred CCHHHHHHHHHHHhCC-------ChHHEEEEEEEcCCCcEE
Confidence 4889999988887643 236789999887544444
No 74
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=34.14 E-value=1.4e+02 Score=21.53 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=38.9
Q ss_pred EEcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 030476 55 TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSG 105 (177)
Q Consensus 55 ~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~ 105 (177)
.++..|...+..|.+.|-+...|-+-+=..+-.+.|++||..+.-+.+...
T Consensus 44 ~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i~~~~i~~~ 94 (124)
T TIGR01999 44 KVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKIKNTEIAKE 94 (124)
T ss_pred EECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhccHHHHHHH
Confidence 456668888889999988777777666666667899999999987665543
No 75
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=32.89 E-value=1.6e+02 Score=24.70 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=32.3
Q ss_pred EEcC-CCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 030476 55 TIYP-HGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 101 (177)
Q Consensus 55 ~idp-~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~a 101 (177)
.+|+ .|......|.+.|-+...|-+-+=..+-.+.|.+||.++..+.
T Consensus 44 ~vd~~~~~I~d~~F~~~GCais~ASAs~~~eli~Gktv~ea~~i~~~d 91 (290)
T TIGR02000 44 KVDPESDKIVDAGFQTFGCGSAIASSSALTEMIKGLTLDEALKVSNQD 91 (290)
T ss_pred EEcCCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHH
Confidence 5676 6777788899888777766665555555677777766655433
No 76
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=32.72 E-value=82 Score=25.04 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=29.7
Q ss_pred eeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 030476 63 DTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 102 (177)
Q Consensus 63 ~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al 102 (177)
.-...+++|.=....+-+|..+ +++++||..|+++++
T Consensus 193 ~a~H~AtvG~idee~LFYL~SR---Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 193 KASHGATVGQIDEEQLFYLMSR---GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEEEEEEES-HHHHHHHHCT---T--HHHHHHHHHHHH
T ss_pred EEEEeeEeecCCHHHHHHHHHc---CCCHHHHHHHHHhhC
Confidence 4457889999999999999986 999999999998875
No 77
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=32.08 E-value=38 Score=30.35 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=44.4
Q ss_pred eeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHHHhh---hcCCCCHHHHHHHHHHHH
Q 030476 39 AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESK---YKEGLTKDEGIQLVVDAI 102 (177)
Q Consensus 39 vslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~---~~~~mt~eeai~l~~~al 102 (177)
+.+|+||.|.++. +-...+.-.-.......+|.........|++. +..--++++|++.+.+..
T Consensus 346 v~lI~GG~~Kg~d-f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDDKGAD-FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCCCCCC-hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 7788899887544 22222222222345889999999999999877 666778999998877754
No 78
>PRK02487 hypothetical protein; Provisional
Probab=31.44 E-value=1.4e+02 Score=22.62 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=29.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC
Q 030476 85 YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH 125 (177)
Q Consensus 85 ~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g 125 (177)
..+.+|.++|.+++..++..+..+ +.++.|+|++ .|
T Consensus 19 ~~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G 54 (163)
T PRK02487 19 VFPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NG 54 (163)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CC
Confidence 346899999999999999998753 4578888885 55
No 79
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=27.55 E-value=60 Score=23.03 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCCeEEEEcCCCceee
Q 030476 49 TGPHLHTIYPHGSTDT 64 (177)
Q Consensus 49 ~gp~Ly~idp~Gs~~~ 64 (177)
++|+||++||.+...+
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 5799999999987765
No 80
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=27.48 E-value=85 Score=26.07 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=32.4
Q ss_pred EEEEeCCCCeEEEEcCCCceeee---CeEEEeCChHHHHHHHHhhhc-CCCCHHHHHHHHHHH
Q 030476 43 LGGVDCTGPHLHTIYPHGSTDTL---PFATMGSGSLAAMAMFESKYK-EGLTKDEGIQLVVDA 101 (177)
Q Consensus 43 laG~D~~gp~Ly~idp~Gs~~~~---~~~a~G~gs~~a~~~Le~~~~-~~mt~eeai~l~~~a 101 (177)
+||.| .....+|..|....+ +-||.|.|+. ||..=+ =+++++|.-+++.++
T Consensus 104 IGGQD---~K~I~~~~~G~v~~f~MNdkCAAGTG~F-----Le~~A~~L~i~leel~~~a~~~ 158 (262)
T TIGR02261 104 IGALH---GRAIRMDERGKVEAYKMTSQCASGSGQF-----LENIARYLGIAQDEIGSLSQQA 158 (262)
T ss_pred eCCCc---eEEEEEcCCCcEeeEEecCcccccccHH-----HHHHHHHhCCCHHHHHHHHhcC
Confidence 45554 467889999988865 7899999863 332211 156666665555443
No 81
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=26.50 E-value=56 Score=18.32 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=10.3
Q ss_pred CCeEEEEcCCCceeeeCeEEEe
Q 030476 50 GPHLHTIYPHGSTDTLPFATMG 71 (177)
Q Consensus 50 gp~Ly~idp~Gs~~~~~~~a~G 71 (177)
|--+=.+||.|....+.|-+.|
T Consensus 5 G~l~~~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 5 GRLTSVTDPDGRTTRYTYDAAG 26 (38)
T ss_pred CCEEEEEcCCCCEEEEEECCCC
Confidence 3333444555555555444443
No 82
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=26.33 E-value=62 Score=28.35 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=61.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCcc----ccCCCCCcCCcc
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRT----FVNAKGYSFPKK 151 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~----~~~~~~~~~~~~ 151 (177)
..-.+|.+.|-..+..+-..+..+..+.++.-+....+..++|.||...+..+.----+|.-.. -.+.-.-.|.+-
T Consensus 336 sltdyirsgwv~gl~~etvkq~~iNG~~Aata~a~A~~w~fdvaVI~~g~rvyrfltavp~gs~~l~~~a~sv~~SFR~l 415 (479)
T COG4784 336 SLTDYIRSGWVAGLDPETVKQTTINGLEAATARASADRWQFDVAVIRAGDRVYRFLTAVPKGSTALEPRANSVRRSFRPL 415 (479)
T ss_pred CHHHHHHHhhhccCChhhhhhhccCCchhcccCCCcccccceEEEEEeCCEEEEEEEecccCcchhhHHHHHHHhhcccC
Confidence 3457899999999988888888899999888777666678999999987644331112221110 011122235553
Q ss_pred cceeeeeeEecc-eeeeeeecCCCCC
Q 030476 152 TEVLLTKITPLR-ERVEVVEGGDAME 176 (177)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (177)
|+-.+...+|+. .++++.. +|.|+
T Consensus 416 t~~E~a~lkPlrirvvtVk~-GqT~~ 440 (479)
T COG4784 416 TPAERAALKPLRIRVVTVKP-GQTMA 440 (479)
T ss_pred CHhHHhccCceEEEEEEecC-CccHH
Confidence 333444556666 5565555 56654
No 83
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=25.55 E-value=79 Score=18.51 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHhh
Q 030476 90 TKDEGIQLVVDAICSGI 106 (177)
Q Consensus 90 t~eeai~l~~~al~~~~ 106 (177)
|++||++.+.+||...+
T Consensus 30 t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 30 TLEEALENAKEALELWL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 77888888888876644
No 84
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=23.78 E-value=1.3e+02 Score=23.93 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=32.4
Q ss_pred EEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhc
Q 030476 68 ATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFN 108 (177)
Q Consensus 68 ~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~ 108 (177)
..+|.|..++-+++-... .+++.+||++.+..++..++++
T Consensus 203 ~~~GaGDaf~a~~~~~l~-~g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 203 NNIGAGCTFASSIASQLV-KGKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred CCCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 358999988777776654 4789999999999998888865
No 85
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=23.50 E-value=1.1e+02 Score=21.68 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=20.6
Q ss_pred eEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 030476 67 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 101 (177)
Q Consensus 67 ~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~a 101 (177)
.|..|.+...+....--.+..+++.++|++.+..+
T Consensus 84 HC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~ 118 (138)
T smart00195 84 HCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDR 118 (138)
T ss_pred ECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44556555444333222334578999999987653
No 86
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.25 E-value=60 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.2
Q ss_pred CCCeEEEEcCCCce
Q 030476 49 TGPHLHTIYPHGST 62 (177)
Q Consensus 49 ~gp~Ly~idp~Gs~ 62 (177)
++|+|+++||.--.
T Consensus 24 d~PrL~yvdp~~~~ 37 (89)
T cd01262 24 NGPRLIYVDPVKKV 37 (89)
T ss_pred cCceEEEEcCCcCe
Confidence 48999999998433
No 87
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=22.79 E-value=1.7e+02 Score=20.50 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=25.3
Q ss_pred EeCChHHHHHHHHh----hhcCCCCHHHHHHHHHHHHHHhh
Q 030476 70 MGSGSLAAMAMFES----KYKEGLTKDEGIQLVVDAICSGI 106 (177)
Q Consensus 70 ~G~gs~~a~~~Le~----~~~~~mt~eeai~l~~~al~~~~ 106 (177)
.|++-.+..-+++. .-+.+++.++|.+++.+.+.-+.
T Consensus 13 sGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a 53 (107)
T PF14748_consen 13 SGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAA 53 (107)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 46665555555554 33569999999999999987655
No 88
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=22.47 E-value=4.1e+02 Score=22.55 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=42.8
Q ss_pred EEEeCChHHHHHHHH---hhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecc
Q 030476 68 ATMGSGSLAAMAMFE---SKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRN 131 (177)
Q Consensus 68 ~a~G~gs~~a~~~Le---~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~ 131 (177)
+..||.+....+++. +.|..+++.++-.+++-++-..+- ..++.+|+.+++-+|.-..+.
T Consensus 96 ~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vq----G~~Sg~D~a~~~~gg~v~~~~ 158 (307)
T COG1577 96 AGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQ----GKASGIDIATITYGGLVAFKK 158 (307)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc----CCCCcccceEEEeCCEEEEec
Confidence 344554444444444 555679999999999999876654 345789999999999876654
No 89
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=21.97 E-value=5e+02 Score=22.06 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhcCCc-----------c-eeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHH
Q 030476 10 RYHTGRESRVVTALTLLKKHLFNYQGY-----------V-QAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAA 77 (177)
Q Consensus 10 ~~~~g~~~~v~~~a~~l~~~l~~~~~~-----------~-gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a 77 (177)
+.-+|.++..+.-+...-..+||..-+ + +..+...|.+.+.+.++..=| +.++.=+|.|..+.
T Consensus 156 EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ip-----ki~~~FtGTGDLfs 230 (308)
T KOG2599|consen 156 EILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIP-----KIDGVFTGTGDLFS 230 (308)
T ss_pred hhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEec-----ccceEEecccHHHH
Confidence 345777887777777777778776321 1 333444455443322111112 24677789988777
Q ss_pred HHHHHhhhcC--CCCHHHHHHHHHHHHHHhhhc
Q 030476 78 MAMFESKYKE--GLTKDEGIQLVVDAICSGIFN 108 (177)
Q Consensus 78 ~~~Le~~~~~--~mt~eeai~l~~~al~~~~~~ 108 (177)
-=+|...++. +-++..|++.++.++...+.+
T Consensus 231 aLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 231 ALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5555555443 368888888888888887764
No 90
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=21.35 E-value=2.2e+02 Score=17.64 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhh
Q 030476 75 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 107 (177)
Q Consensus 75 ~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~ 107 (177)
+.|..-+......+||--|||.++.+-|+....
T Consensus 14 Q~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 14 QQAVERIQELMAQGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 345556666677899999999999999987654
No 91
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=21.19 E-value=59 Score=29.00 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=32.1
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHH-hhhccCCCCC---cEEEEEEec-------CCe---EEecceeCCC
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICS-GIFNDLGSGS---NVDVCVITK-------GHK---EYLRNHLLPN 136 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~-~~~~D~~sg~---~vev~vi~k-------~g~---~~~~~~~~~~ 136 (177)
-+-.||+++|.|+||.|.++.=-- -+-||..+-. .+-+.|-+. +|. +..|.|.+++
T Consensus 211 SKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~ 280 (483)
T KOG1930|consen 211 SKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEP 280 (483)
T ss_pred cccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheecc
Confidence 344678999999999997764111 1225543322 234444432 343 6677777753
No 92
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=21.16 E-value=1.5e+02 Score=25.05 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=30.4
Q ss_pred EEEEeCCCCeEEEEcCCCceeee---CeEEEeCChHHHHHHHHhhhcC-CCCHHHHHHHH
Q 030476 43 LGGVDCTGPHLHTIYPHGSTDTL---PFATMGSGSLAAMAMFESKYKE-GLTKDEGIQLV 98 (177)
Q Consensus 43 laG~D~~gp~Ly~idp~Gs~~~~---~~~a~G~gs~~a~~~Le~~~~~-~mt~eeai~l~ 98 (177)
+||.| ..+..+|.+|..... +-||.|.|+ +||..=+. +++++|.-+++
T Consensus 132 IGGQD---sK~I~~d~~G~v~dF~MNdkCAAGTGr-----FLE~~A~~Lgi~leel~~~a 183 (293)
T TIGR03192 132 MGGQD---CKAIHCDEKGKVTNFLMNDKCAAGTGR-----GMEVISDLMQIPIADLGPRS 183 (293)
T ss_pred eCCCc---eEEEEEcCCCcEeeeeecCcccccccH-----HHHHHHHHcCCCHHHHHHHH
Confidence 45555 568888999987764 788999986 33332211 55666654443
No 93
>PRK12412 pyridoxal kinase; Reviewed
Probab=20.36 E-value=1.5e+02 Score=23.96 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=32.4
Q ss_pred EEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhcc
Q 030476 69 TMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFND 109 (177)
Q Consensus 69 a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D 109 (177)
.+|.|..++-+++-... .+++.+||++.+..++..++.+-
T Consensus 208 t~GaGD~f~aa~aa~l~-~g~~l~eA~~~A~~~~~~~i~~~ 247 (268)
T PRK12412 208 THGAGCTYSAAITAELA-KGKPVKEAVKTAKEFITAAIRYS 247 (268)
T ss_pred CCchHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 36999988877776654 47899999999999999888653
Done!