Query 030476
Match_columns 177
No_of_seqs 179 out of 1366
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 23:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3unf_H Proteasome subunit beta 100.0 7.3E-44 2.5E-48 287.8 21.9 173 2-177 59-233 (234)
2 1iru_I 20S proteasome; cell cy 100.0 1.6E-41 5.4E-46 273.9 19.0 174 1-177 58-233 (234)
3 3nzj_H Proteasome component PU 100.0 1.5E-40 5.2E-45 272.3 21.7 164 2-166 88-253 (261)
4 1ryp_I 20S proteasome; multica 100.0 3.5E-39 1.2E-43 258.2 21.9 161 2-163 59-221 (222)
5 1iru_N 20S proteasome; cell cy 100.0 1.4E-31 4.8E-36 213.2 16.7 140 2-141 67-212 (219)
6 1iru_L 20S proteasome; cell cy 100.0 3E-31 1E-35 209.1 17.0 133 2-134 59-192 (204)
7 1ryp_K 20S proteasome; multica 100.0 3.8E-31 1.3E-35 207.5 17.1 132 2-133 60-196 (198)
8 1j2q_H Proteasome beta subunit 100.0 2.9E-31 1E-35 208.9 16.3 133 2-134 59-193 (202)
9 3h4p_a Proteasome subunit beta 100.0 3.6E-31 1.2E-35 211.2 14.7 133 2-134 60-195 (219)
10 1ryp_L 20S proteasome; multica 100.0 1.7E-30 5.9E-35 206.0 17.5 135 2-136 59-195 (212)
11 1yar_H Proteasome beta subunit 100.0 1.5E-30 5.3E-35 207.3 16.3 132 2-134 67-200 (217)
12 1iru_H 20S proteasome; cell cy 100.0 2.6E-30 9E-35 203.8 17.4 133 2-134 59-194 (205)
13 1ryp_N 20S proteasome; multica 100.0 1.6E-30 5.6E-35 209.0 15.3 139 2-140 67-221 (233)
14 3nzj_K Proteasome component PR 100.0 2.4E-30 8.3E-35 214.3 16.7 134 2-135 134-269 (287)
15 1iru_K 20S proteasome; cell cy 100.0 6.4E-30 2.2E-34 201.1 17.5 132 2-133 60-195 (201)
16 1ryp_H 20S proteasome; multica 100.0 6.8E-30 2.3E-34 201.6 16.8 127 2-129 68-195 (205)
17 1yar_A Proteasome alpha subuni 100.0 9E-30 3.1E-34 204.6 16.4 130 2-132 92-227 (233)
18 1iru_B 20S proteasome; cell cy 100.0 1E-29 3.5E-34 204.3 16.3 132 2-134 89-225 (233)
19 1ryp_A 20S proteasome; multica 100.0 1.1E-29 3.7E-34 205.4 15.7 132 2-134 88-232 (243)
20 1iru_M 20S proteasome; cell cy 100.0 4.5E-29 1.5E-33 197.8 18.6 128 2-129 68-206 (213)
21 1g0u_M Proteasome component PR 100.0 1.2E-29 4.2E-34 207.9 15.4 139 2-140 100-254 (266)
22 1ryp_M 20S proteasome; multica 100.0 5.5E-29 1.9E-33 198.9 18.7 128 2-129 68-215 (222)
23 1ryp_J 20S proteasome; multica 100.0 1.2E-28 4.3E-33 194.1 18.6 128 2-129 66-197 (204)
24 1iru_J 20S proteasome; cell cy 100.0 9.6E-29 3.3E-33 194.9 17.9 128 2-129 67-198 (205)
25 3unf_N Proteasome subunit beta 100.0 6.3E-29 2.2E-33 195.0 16.2 134 2-137 59-196 (199)
26 1ryp_G 20S proteasome; multica 100.0 8.9E-29 3E-33 200.4 17.0 133 2-134 88-231 (244)
27 1ryp_F 20S proteasome; multica 100.0 7.2E-29 2.5E-33 199.4 16.0 132 2-134 87-229 (233)
28 1iru_F 20S proteasome; cell cy 100.0 1.6E-28 5.3E-33 201.1 16.7 133 2-134 88-229 (263)
29 1iru_A 20S proteasome; cell cy 100.0 2.3E-28 7.9E-33 197.9 17.1 130 2-132 94-233 (246)
30 1iru_C 20S proteasome; cell cy 100.0 1.3E-28 4.5E-33 201.2 15.0 125 2-126 90-221 (261)
31 1ryp_C 20S proteasome; multica 100.0 3.3E-28 1.1E-32 196.7 16.0 125 2-126 90-222 (244)
32 1ryp_E 20S proteasome; multica 100.0 2.1E-28 7.3E-33 197.6 14.8 129 2-131 84-225 (242)
33 1iru_G 20S proteasome; cell cy 100.0 1.6E-28 5.5E-33 199.9 13.6 131 2-132 91-230 (254)
34 3h4p_A Proteasome subunit alph 100.0 2.6E-28 8.9E-33 200.0 14.8 131 1-133 95-232 (264)
35 1q5q_H Proteasome beta-type su 100.0 7E-28 2.4E-32 194.1 16.6 133 2-134 59-210 (235)
36 1iru_E 20S proteasome; cell cy 100.0 3.3E-28 1.1E-32 196.5 14.3 124 2-126 92-225 (241)
37 3mi0_A Proteasome subunit alph 100.0 7.2E-28 2.5E-32 195.8 16.4 123 2-125 78-217 (248)
38 3nzj_F Proteasome component C1 100.0 9.2E-28 3.1E-32 198.9 16.8 122 2-123 92-221 (288)
39 1ryp_D 20S proteasome; multica 100.0 1.7E-27 5.9E-32 192.2 17.1 130 2-134 87-227 (241)
40 1j2p_A Alpha-ring, proteasome 100.0 1.3E-27 4.6E-32 193.5 16.4 131 2-134 92-229 (246)
41 1iru_D 20S proteasome; cell cy 100.0 9.7E-28 3.3E-32 194.6 14.2 130 2-134 87-225 (248)
42 1q5r_H Proteasome beta-type su 99.9 1.9E-27 6.5E-32 197.5 14.7 133 2-134 124-275 (294)
43 1q5q_A Proteasome alpha-type s 99.9 3.1E-27 1E-31 193.0 14.7 130 2-132 78-226 (259)
44 1ryp_B 20S proteasome; multica 99.9 2.4E-26 8.3E-31 186.5 16.3 125 2-127 89-220 (250)
45 2jay_A Proteasome; hydrolase; 99.9 7.7E-27 2.6E-31 193.6 13.4 133 2-134 116-267 (291)
46 1g3k_A ATP-dependent protease 99.9 7.2E-21 2.5E-25 146.4 13.1 110 2-122 60-173 (174)
47 1m4y_A ATP-dependent protease 99.8 6.6E-20 2.3E-24 140.6 13.3 107 2-121 60-171 (171)
48 2z3b_A ATP-dependent protease 99.8 9E-20 3.1E-24 141.2 12.6 107 2-121 66-179 (180)
49 3fpw_A HBPS, extracellular HAE 46.2 38 0.0013 25.7 5.4 39 86-128 62-100 (192)
50 3ub6_A Chemoreceptor TLPB; hom 45.1 62 0.0021 23.7 6.4 52 75-131 34-85 (181)
51 2a2l_A Unknown; structural gen 42.7 26 0.00089 25.1 3.8 37 87-127 10-46 (145)
52 3lvl_A NIFU-like protein; prot 42.0 44 0.0015 23.4 4.9 53 52-104 43-96 (129)
53 2q8v_A NBLA protein; phycobili 35.3 32 0.0011 21.4 2.8 22 88-109 29-50 (63)
54 1ojh_A NBLA; degradation prote 35.0 33 0.0011 21.5 2.8 22 88-109 24-45 (65)
55 2z7e_A ISCU protein, NIFU-like 34.3 85 0.0029 22.8 5.5 55 52-106 41-97 (157)
56 4gof_A Small glutamine-rich te 30.1 89 0.003 18.5 4.2 35 76-110 8-45 (52)
57 4gdv_A L-asparaginase; NTN enz 29.7 2.2E+02 0.0076 23.0 8.3 63 58-126 206-275 (310)
58 1apy_B Aspartylglucosaminidase 29.4 1.3E+02 0.0043 21.6 5.7 57 66-127 48-108 (141)
59 4asv_A Small glutamine-rich te 29.0 1.1E+02 0.0038 20.3 4.9 34 76-109 25-61 (92)
60 1p4k_A N(4)-(beta-N-acetylgluc 28.3 2.3E+02 0.008 22.7 7.8 69 59-127 189-266 (295)
61 1j98_A Autoinducer-2 productio 27.8 1.1E+02 0.0038 22.4 5.1 54 52-105 75-148 (157)
62 1xjs_A NIFU-like protein; SR17 26.5 1.7E+02 0.0059 20.7 6.0 50 52-102 46-96 (147)
63 2kxe_A DNA polymerase II small 25.2 93 0.0032 19.5 3.7 26 75-100 20-46 (75)
64 1su0_B NIFU like protein ISCU; 24.8 2E+02 0.0068 20.7 6.9 49 52-101 45-94 (159)
65 2lxb_A Small glutamine-rich te 24.1 1.4E+02 0.0049 18.9 4.9 35 76-110 13-50 (74)
66 3fau_A NEDD4-binding protein 2 23.3 60 0.002 20.5 2.7 39 88-126 7-45 (82)
67 2d9i_A NEDD4-binding protein 2 23.1 80 0.0027 20.5 3.4 39 88-126 15-53 (96)
68 1j6x_A Autoinducer-2 productio 22.9 1.9E+02 0.0065 21.2 5.6 52 53-104 72-143 (160)
69 2qq4_A Iron-sulfur cluster bio 21.7 2.1E+02 0.0072 20.0 5.8 52 52-104 44-96 (138)
70 3s4o_A Protein tyrosine phosph 21.2 88 0.003 21.6 3.5 34 68-101 116-149 (167)
No 1
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7.3e-44 Score=287.81 Aligned_cols=173 Identities=44% Similarity=0.719 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF 81 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~L 81 (177)
++.++++|++++|++++++.+++++++++++++++|++++||||||.+||+||++||+|++.+++++|+|+|+..++++|
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 138 (234)
T 3unf_H 59 AASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALL 138 (234)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHH
T ss_pred HHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCccccCCCCCcCCc-ccceeeeeeE
Q 030476 82 ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKIT 160 (177)
Q Consensus 82 e~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (177)
|+.|+++||+|||++++++||..++.+|+.+|++++|++|+++|+++++|+++|++|. .++..|+|+| +|+||+++|.
T Consensus 139 e~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T 3unf_H 139 EDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPV-QRAGRYRFAPGTTPVLTREVR 217 (234)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCC-CCCCCCCCCTTCSCEEEEEEE
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccc-cccccccCCCCCcceeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999 5999999999 9999999999
Q ss_pred ecc-eeeeeeecCCCCCC
Q 030476 161 PLR-ERVEVVEGGDAMEE 177 (177)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~ 177 (177)
++. |.++.++ |+||+
T Consensus 218 ~~~~~~~~~~~--~~~~~ 233 (234)
T 3unf_H 218 PLTLELLEETV--QAMEV 233 (234)
T ss_dssp EC----------------
T ss_pred EeeEEEEEeee--eeccC
Confidence 998 7776666 89986
No 2
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.6e-41 Score=273.93 Aligned_cols=174 Identities=55% Similarity=0.892 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
+++.++++|+++++++++++.+++++++++++++++|++++||||||.+||+||++||+|++.+++++|+|+|+..++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 137 (234)
T 1iru_I 58 LISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAV 137 (234)
T ss_dssp HHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHH
Confidence 37899999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCccccCCCCCcCCc-ccceeeeee
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKI 159 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (177)
||+.|+++||++||++++++||..++.+|..+|++++|++|+++|+++++|+..+++|.+ ++.+|+||+ ||++|+++|
T Consensus 138 Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (234)
T 1iru_I 138 FEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT-RLGRYRCEKGTTAVLTEKI 216 (234)
T ss_dssp HHHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCC-CCSCCCCCTTCSCBSCCCC
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCccccc-cccCcccCCCceeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999995 799999999 999999999
Q ss_pred Eecc-eeeeeeecCCCCCC
Q 030476 160 TPLR-ERVEVVEGGDAMEE 177 (177)
Q Consensus 160 ~~~~-~~~~~~~~~~~~~~ 177 (177)
.++. +.++... ++||+
T Consensus 217 ~~~~~~~~~~~~--~~~~~ 233 (234)
T 1iru_I 217 TPLEIEVLEETV--QTMDT 233 (234)
T ss_dssp CBCC---------------
T ss_pred Eecchhheeccc--ccccC
Confidence 9997 5544333 78885
No 3
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.5e-40 Score=272.31 Aligned_cols=164 Identities=54% Similarity=0.825 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF 81 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~L 81 (177)
++.++++|++++++++++..+++++++++++++++|++++||||||.+||+||++||+|++.+++++|+|+|+..++++|
T Consensus 88 lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~L 167 (261)
T 3nzj_H 88 IGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVL 167 (261)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHH
T ss_pred HHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHH
Confidence 78999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC-eEEecceeCCCCccccCCCCCcCCc-ccceeeeee
Q 030476 82 ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKI 159 (177)
Q Consensus 82 e~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (177)
|+.|+++||+|||++++++||..++.+|..+|++++|++|+++| .+++|||.+|++|.+ ++..|+||+ +|+||+++|
T Consensus 168 e~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (261)
T 3nzj_H 168 ESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGTTAVLKESI 246 (261)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCC-CSSCCCCCTTCSCEEEEEE
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccc-cccccCCCCCCcceeeEEE
Confidence 99999999999999999999999999999999999999999999 899999999999995 999999999 999999999
Q ss_pred Eecceee
Q 030476 160 TPLRERV 166 (177)
Q Consensus 160 ~~~~~~~ 166 (177)
+++.+.+
T Consensus 247 ~~~~~~~ 253 (261)
T 3nzj_H 247 VNICDIQ 253 (261)
T ss_dssp ECCCC--
T ss_pred EEeeeee
Confidence 9997433
No 4
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3.5e-39 Score=258.20 Aligned_cols=161 Identities=55% Similarity=0.842 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF 81 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~L 81 (177)
++.++++|+++++++++++.+++++++++++++++|++++|+||+|.+||+||++||+|++.+++++|+|+|+..++++|
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 138 (222)
T 1ryp_I 59 IGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVL 138 (222)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHH
Confidence 78899999999999999999999999999999989999999999999899999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC-eEEecceeCCCCccccCCCCCcCCc-ccceeeeee
Q 030476 82 ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKI 159 (177)
Q Consensus 82 e~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (177)
|+.|+++||+|||++++++||..++++|..+|++++|++|+++| +++++|+.++++|.+ ++.+|.||+ +|++++++|
T Consensus 139 e~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 217 (222)
T 1ryp_I 139 ESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREE-KQKSYKFPRGTTAVLKESI 217 (222)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCC-CSSCCCCCTTCSCEEEEEE
T ss_pred HhhCCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCcccc-cccCcccCCCceeeeeeee
Confidence 99999999999999999999999999999999999999999999 999999999999995 789999999 999999999
Q ss_pred Eecc
Q 030476 160 TPLR 163 (177)
Q Consensus 160 ~~~~ 163 (177)
+++.
T Consensus 218 ~~~~ 221 (222)
T 1ryp_I 218 VNIC 221 (222)
T ss_dssp CCCC
T ss_pred Eecc
Confidence 8874
No 5
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.98 E-value=1.4e-31 Score=213.20 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=133.9
Q ss_pred HHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHhcC---CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHH
Q 030476 2 VSSQLQLHRY-HTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAA 77 (177)
Q Consensus 2 lr~e~~~~~~-~~g~~~~v~~~a~~l~~~l~~~~---~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a 77 (177)
+|.+++.|++ +++++++++.+++++++++|.++ .||++++||||+|++||+||++||+|++.+++++|+|+|+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a 146 (219)
T 1iru_N 67 LGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLA 146 (219)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHH
Confidence 7889999998 99999999999999999998764 3599999999999889999999999999999999999999999
Q ss_pred HHHHHhhhcC--CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCcccc
Q 030476 78 MAMFESKYKE--GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFV 141 (177)
Q Consensus 78 ~~~Le~~~~~--~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~~ 141 (177)
+++||+.|++ +||++||++++++||..+.++|..++++++|++|+++|.+++.++++++.|.|+
T Consensus 147 ~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~~~ 212 (219)
T 1iru_N 147 QPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIA 212 (219)
T ss_dssp HHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGG
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhhHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999873
No 6
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.97 E-value=3e-31 Score=209.07 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc-ceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~-~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
++.+++.|+++++++++++.++++++++++.++.. +++++|+||||.+||+||++||+|++.++++.|+|+|+..++++
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~ 138 (204)
T 1iru_L 59 LARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGV 138 (204)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHH
Confidence 68899999999999999999999999999999764 99999999999989999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
||+.|+++||++||++++++||..++++|..++++++|++|+++|.+.+.+.++
T Consensus 139 Le~~~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei 192 (204)
T 1iru_L 139 MDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNV 192 (204)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEH
T ss_pred HhccCCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHH
Confidence 999999999999999999999999999999899999999999999988877665
No 7
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.97 E-value=3.8e-31 Score=207.53 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC---CcceeeEEEEEEeC--CCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDC--TGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~---~~~gvslIlaG~D~--~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.++++|+++++++++++.+++++++++++++ .+|++++|+||||+ +||+||++||+|++.+++++|+|+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~ 139 (198)
T 1ryp_K 60 IQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFY 139 (198)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHH
Confidence 788999999999999999999999999998873 47999999999996 7899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEeccee
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHL 133 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~ 133 (177)
++++||+.|+++||+|||++++++||..+.++|..++++++|++|+++|++.+.+++
T Consensus 140 a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 140 TFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 999999999999999999999999999999999999999999999999999988763
No 8
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.97 E-value=2.9e-31 Score=208.87 Aligned_cols=133 Identities=27% Similarity=0.377 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeCCCCeEEEEcCCCceeeeC-eEEEeCChHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDCTGPHLHTIYPHGSTDTLP-FATMGSGSLAAMA 79 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~-~~a~G~gs~~a~~ 79 (177)
++.+++.|+++++++++++.+++++++++++++. +|++++|+||||.+||+||++||+|++.+++ ++|+|+|+..+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~ 138 (202)
T 1j2q_H 59 IKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYG 138 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHH
Confidence 7899999999999999999999999999998764 6999999999999899999999999999999 9999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
+||+.|+++||++||++++++||..++++|..++++++|++|+++|.+.+.+.++
T Consensus 139 ~Le~~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei 193 (202)
T 1j2q_H 139 VLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEV 193 (202)
T ss_dssp HHHHHCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHH
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHH
Confidence 9999999999999999999999999999999899999999999999888766554
No 9
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=3.6e-31 Score=211.25 Aligned_cols=133 Identities=27% Similarity=0.445 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeC-CCCeEEEEcCCCceeeeC-eEEEeCChHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDC-TGPHLHTIYPHGSTDTLP-FATMGSGSLAAM 78 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~-~~a~G~gs~~a~ 78 (177)
++.++++|+++++++++++.+++++++++++++. +|++++||||||. +||+||++||+|++.+++ ++|+|+|+..++
T Consensus 60 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~ 139 (219)
T 3h4p_a 60 LIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAY 139 (219)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHH
Confidence 7889999999999999999999999999998864 5999999999998 789999999999999999 999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 79 AMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 79 ~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
++||+.|+++||+|||++++++||..++++|..+|++++|++|+++|++++.+.++
T Consensus 140 ~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei 195 (219)
T 3h4p_a 140 GVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEI 195 (219)
T ss_dssp HHHHTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHH
Confidence 99999999999999999999999999999999999999999999999998866654
No 10
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.97 E-value=1.7e-30 Score=205.97 Aligned_cols=135 Identities=23% Similarity=0.336 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc-ceeeEEEEEEe-CCCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~-~gvslIlaG~D-~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
++.+++.|+++++++++++.+++++++++++++.. |++++|+|||| .+||+||++||+|++.+++++|+|+|+..+++
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 138 (212)
T 1ryp_L 59 LGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYG 138 (212)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHH
Confidence 78999999999999999999999999999998764 99999999999 47899999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCC
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPN 136 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~ 136 (177)
+||+.|+++||++||++++++||..+.++|..++++++|++|+++|.+.+.+.+++.
T Consensus 139 ~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~ 195 (212)
T 1ryp_L 139 VLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGE 195 (212)
T ss_dssp HHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHH
T ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHH
Confidence 999999999999999999999999999999999999999999999999887776643
No 11
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.97 E-value=1.5e-30 Score=207.25 Aligned_cols=132 Identities=32% Similarity=0.448 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
++.+++.|+++++++++++.+++++++++++++. +|++++|+|||| +||+||++||+|++.+++++|+|+|+..++++
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 145 (217)
T 1yar_H 67 MKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGV 145 (217)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHH
Confidence 7899999999999999999999999999998864 599999999999 99999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEec-CCeEEecceeC
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKEYLRNHLL 134 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k-~g~~~~~~~~~ 134 (177)
||+.|+++||+|||++++++||..++++|..++++++|++|++ +|.+.+.+.++
T Consensus 146 Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei 200 (217)
T 1yar_H 146 LESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQI 200 (217)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHH
T ss_pred HHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHH
Confidence 9999999999999999999999999999998999999999999 88887766554
No 12
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.97 E-value=2.6e-30 Score=203.83 Aligned_cols=133 Identities=26% Similarity=0.381 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
++.++++|+++++++++++.++++++++++.++.+|++++|+||||+ +||+||.+||+|++.+++++++|+|+..++++
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~ 138 (205)
T 1iru_H 59 VTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGY 138 (205)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHH
Confidence 78999999999999999999999999999999889999999999998 78999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE--EecceeC
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE--YLRNHLL 134 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~--~~~~~~~ 134 (177)
||+.|+++||++||++++++||..+.++|..++++++|++|+++|.+ .+.+.++
T Consensus 139 Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei 194 (205)
T 1iru_H 139 VDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQI 194 (205)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGS
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHh
Confidence 99999999999999999999999999999989999999999999975 3444444
No 13
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.97 E-value=1.6e-30 Score=209.04 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=132.9
Q ss_pred HHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHhcC---CcceeeEEEEEEeCC-CCeEEEEcCCCceeeeCeEEEeC
Q 030476 2 VSSQLQLHRY-----HTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGS 72 (177)
Q Consensus 2 lr~e~~~~~~-----~~g~~~~v~~~a~~l~~~l~~~~---~~~gvslIlaG~D~~-gp~Ly~idp~Gs~~~~~~~a~G~ 72 (177)
++.+++.|++ +++++++++.+++++++++|.++ .+|++++||||||.+ ||+||++||+|++.+++++|+|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGs 146 (233)
T 1ryp_N 67 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGF 146 (233)
T ss_dssp HHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTH
T ss_pred HHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECc
Confidence 7889999999 99999999999999999998775 369999999999985 89999999999999999999999
Q ss_pred ChHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecC-CeEEecceeCCCC-ccc
Q 030476 73 GSLAAMAMFESKYKE-----GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEYLRNHLLPNP-RTF 140 (177)
Q Consensus 73 gs~~a~~~Le~~~~~-----~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~-g~~~~~~~~~~~~-~~~ 140 (177)
|+..++++||+.|++ +||+|||++++++||..++++|..++++++|++|+++ |++++.++++... |.|
T Consensus 147 gs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~ 221 (233)
T 1ryp_N 147 GAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDF 221 (233)
T ss_dssp HHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGG
T ss_pred CHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchh
Confidence 999999999999999 9999999999999999999999999999999999999 9999999999988 886
No 14
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.97 E-value=2.4e-30 Score=214.33 Aligned_cols=134 Identities=23% Similarity=0.338 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCc-ceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~-~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
++.++++|+++++++++++.++++++++++.++.. |++++||||||. +||+||++||+|++.+++++|+|+|+..+++
T Consensus 134 lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~ 213 (287)
T 3nzj_K 134 LGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYG 213 (287)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHH
Confidence 78999999999999999999999999999999764 999999999994 7899999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCC
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLP 135 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~ 135 (177)
+||+.|+++||+|||++++++||..+++||..+|++++|++|+++|++++.+.++.
T Consensus 214 ~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~ 269 (287)
T 3nzj_K 214 VLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVG 269 (287)
T ss_dssp HHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHH
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999888763
No 15
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.97 E-value=6.4e-30 Score=201.07 Aligned_cols=132 Identities=19% Similarity=0.265 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHH-Hhc--CCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHL-FNY--QGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAA 77 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l-~~~--~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a 77 (177)
++.++++|+++++++++++.+++++++.+ +.+ +.+|++++|+||||. +||+||++||+|++.+++++|+|+|+..+
T Consensus 60 ~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a 139 (201)
T 1iru_K 60 IQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLT 139 (201)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHH
Confidence 68899999999999999999999998765 442 247999999999997 68999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEeccee
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHL 133 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~ 133 (177)
+++||+.|+++||++||++++++||..+.+||..++.+++|++|+++|++.++++.
T Consensus 140 ~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~ 195 (201)
T 1iru_K 140 LSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNIS 195 (201)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeeccc
Confidence 99999999999999999999999999999999999999999999999999887754
No 16
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.97 E-value=6.8e-30 Score=201.60 Aligned_cols=127 Identities=25% Similarity=0.383 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
++.++++|++++++ ++++.++++++++++.++..|++++|+||||+ +||+||++||+|++.++++.|+|+|+..++++
T Consensus 68 ~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~ 146 (205)
T 1ryp_H 68 VQYHLELYTSQYGT-PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGY 146 (205)
T ss_dssp HHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHH
Confidence 78899999999999 99999999999999999877999999999997 78999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
||+.|+++||++||++++++||..++++|..++++++|++|+++|++..
T Consensus 147 Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~ 195 (205)
T 1ryp_H 147 CDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195 (205)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence 9999999999999999999999999999999999999999999998754
No 17
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.97 E-value=9e-30 Score=204.61 Aligned_cols=130 Identities=21% Similarity=0.336 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-----cceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-----YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-----~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.++++|+++++++++++.++++++++++.++. +|++++||||||++||+||++||+|++.+++++|+|+|+..
T Consensus 92 ~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~ 171 (233)
T 1yar_A 92 ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDA 171 (233)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEcCCcHH
Confidence 6889999999999999999999999999987642 59999999999998999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC-eEEecce
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNH 132 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g-~~~~~~~ 132 (177)
++++||+.|+++||+|||++++++||..+.++|+ ++++++|++|+++| .+++.+.
T Consensus 172 a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ 227 (233)
T 1yar_A 172 VVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQE 227 (233)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHH
Confidence 9999999999999999999999999999999998 79999999999998 5555443
No 18
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.97 E-value=1e-29 Score=204.30 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.++++|+++++++++++.++++++++++.|. .+|++++||||||.+||+||++||+|++.+++++|+|+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~ 168 (233)
T 1iru_B 89 ARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVN 168 (233)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTTHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECCCCHH
Confidence 688999999999999999999999999997663 259999999999988999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
++++||+.|+++||+|||++++++||..+.++| .++++++|++|+++|.+++.+.++
T Consensus 169 a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei 225 (233)
T 1iru_B 169 GKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEV 225 (233)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHH
Confidence 999999999999999999999999999999999 578999999999999888876654
No 19
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.97 E-value=1.1e-29 Score=205.41 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HhcC---CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHL--FNYQ---GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l--~~~~---~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
+|.++++|++++|++++++.+++++++++ |..+ .+|++++||||||+ +||+||++||+|++.+++++|+|+|+.
T Consensus 88 ~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~ 167 (243)
T 1ryp_A 88 AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQ 167 (243)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcH
Confidence 78999999999999999999999999998 3322 36999999999997 789999999999999999999999999
Q ss_pred HHHHHHHhhhcC-------CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeC
Q 030476 76 AAMAMFESKYKE-------GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 76 ~a~~~Le~~~~~-------~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~ 134 (177)
.++++||+.|++ +||+|||++++++||..++++| .++++++|++|+++|.+++.+.++
T Consensus 168 ~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei 232 (243)
T 1ryp_A 168 EITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENI 232 (243)
T ss_dssp HHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHH
T ss_pred HHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHH
Confidence 999999999999 9999999999999999999999 589999999999999777655543
No 20
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.97 E-value=4.5e-29 Score=197.82 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-CcceeeEEEEEEeCCC-CeEEEEcCCCceeeeCeEEEeCChHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-GYVQAALVLGGVDCTG-PHLHTIYPHGSTDTLPFATMGSGSLAAMA 79 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-~~~gvslIlaG~D~~g-p~Ly~idp~Gs~~~~~~~a~G~gs~~a~~ 79 (177)
++.++++|+++++++++++.+++++++++|.++ .+|++++||||||.+| |+||++||+|++.+++++|+|+|+..+++
T Consensus 68 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~ 147 (213)
T 1iru_M 68 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQP 147 (213)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHH
Confidence 788999999999999999999999999998765 3599999999999754 99999999999999999999999999999
Q ss_pred HHHhh---------hcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 80 MFESK---------YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 80 ~Le~~---------~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+||+. |+++||+|||++++++||..+.++|..++++++|++|+++|++..
T Consensus 148 ~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 148 LLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp HHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred HHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 99999 889999999999999999999999999999999999999998754
No 21
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.97 E-value=1.2e-29 Score=207.91 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=132.9
Q ss_pred HHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHhcC---CcceeeEEEEEEeCC-CCeEEEEcCCCceeeeCeEEEeC
Q 030476 2 VSSQLQLHRY-----HTGRESRVVTALTLLKKHLFNYQ---GYVQAALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGS 72 (177)
Q Consensus 2 lr~e~~~~~~-----~~g~~~~v~~~a~~l~~~l~~~~---~~~gvslIlaG~D~~-gp~Ly~idp~Gs~~~~~~~a~G~ 72 (177)
+|.+++.|++ +++++++++.+++++++++|.++ .+|++++||||||.+ ||+||++||+|++.+++++|+|+
T Consensus 100 lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGs 179 (266)
T 1g0u_M 100 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGF 179 (266)
T ss_dssp HHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTH
T ss_pred HHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEcc
Confidence 7889999998 99999999999999999998775 369999999999985 89999999999999999999999
Q ss_pred ChHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecC-CeEEecceeCCCC-ccc
Q 030476 73 GSLAAMAMFESKYKE-----GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEYLRNHLLPNP-RTF 140 (177)
Q Consensus 73 gs~~a~~~Le~~~~~-----~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~-g~~~~~~~~~~~~-~~~ 140 (177)
|+..++++||+.|++ +||+|||++++++||..++++|..++++++|++|+++ |++++.++++.+. |.|
T Consensus 180 gs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~ 254 (266)
T 1g0u_M 180 GAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDF 254 (266)
T ss_dssp HHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGG
T ss_pred CHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhH
Confidence 999999999999999 9999999999999999999999999999999999999 9999999999998 986
No 22
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.97 E-value=5.5e-29 Score=198.89 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeCCC-CeEEEEcCCCceeeeCeEEEeCChHHHH
Q 030476 2 VSSQLQLHRYHTG-RESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDCTG-PHLHTIYPHGSTDTLPFATMGSGSLAAM 78 (177)
Q Consensus 2 lr~e~~~~~~~~g-~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~~g-p~Ly~idp~Gs~~~~~~~a~G~gs~~a~ 78 (177)
++.+++.|+++++ ++++++.+++++++++|.++. +|++++||||||.+| |+||++||+|++.+++++|+|+|+..++
T Consensus 68 ~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~ 147 (222)
T 1ryp_M 68 FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIM 147 (222)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHH
Confidence 7889999999999 999999999999999988764 599999999999754 9999999999999999999999999999
Q ss_pred HHHHhh-----------------hcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 79 AMFESK-----------------YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 79 ~~Le~~-----------------~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
++||+. |+++||+|||++++++||..+.++|..+|++++|++|+++|++..
T Consensus 148 ~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~ 215 (222)
T 1ryp_M 148 PFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE 215 (222)
T ss_dssp HHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred HHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence 999998 889999999999999999999999999999999999999998754
No 23
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.96 E-value=1.2e-28 Score=194.10 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeC--CCCeEEEEcCCCceeee-CeEEEeCChHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDC--TGPHLHTIYPHGSTDTL-PFATMGSGSLAA 77 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~--~gp~Ly~idp~Gs~~~~-~~~a~G~gs~~a 77 (177)
++.+++.|+++++++++++.+++++++++|.+++ +|++++|+||||. +||+||++||+|++.++ +++|+|+|+..+
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a 145 (204)
T 1ryp_J 66 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQL 145 (204)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHH
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHH
Confidence 6889999999999999999999999999987654 5999999999996 78999999999999776 679999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+++||+.|+++||+|||++++++||..+.++|..++++++|++|+++|++..
T Consensus 146 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 197 (204)
T 1ryp_J 146 FGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKR 197 (204)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEE
T ss_pred HHHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEE
Confidence 9999999999999999999999999999999998999999999999998754
No 24
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.96 E-value=9.6e-29 Score=194.87 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC-cceeeEEEEEEeC--CCCeEEEEcCCCceeee-CeEEEeCChHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG-YVQAALVLGGVDC--TGPHLHTIYPHGSTDTL-PFATMGSGSLAA 77 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~-~~gvslIlaG~D~--~gp~Ly~idp~Gs~~~~-~~~a~G~gs~~a 77 (177)
++.++++|+++++++++++.+++++++++|.+++ +|++++|+||||. +||+||++||+|++.++ .|+|+|+|+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a 146 (205)
T 1iru_J 67 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQM 146 (205)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHH
Confidence 6889999999999999999999999999987764 5999999999995 78999999999999776 679999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEe
Q 030476 78 MAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 129 (177)
Q Consensus 78 ~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~ 129 (177)
+++||+.|+++||+|||++++++||..+.++|..++.+++|++|+++|+++.
T Consensus 147 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 198 (205)
T 1iru_J 147 YGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTR 198 (205)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEE
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999998754
No 25
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.96 E-value=6.3e-29 Score=194.97 Aligned_cols=134 Identities=25% Similarity=0.324 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeC-CCCeEEEEcCCCceeeeC-eEEEeCChHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLP-FATMGSGSLAAMA 79 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~-~~a~G~gs~~a~~ 79 (177)
++.++++|+++++++++++.+++++++++++++.+|++++||||||+ +||+||+ |+|++..+. +.++|+|+..+++
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~ 136 (199)
T 3unf_N 59 AAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYG 136 (199)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHH
Confidence 68899999999999999999999999999999889999999999998 6799999 999987765 5667999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEE--ecceeCCCC
Q 030476 80 MFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY--LRNHLLPNP 137 (177)
Q Consensus 80 ~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~--~~~~~~~~~ 137 (177)
+||+.|+++||+|||++++++||..++++|..+|++++|++|+++|+++ +.+.+++.-
T Consensus 137 ~Le~~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~ 196 (199)
T 3unf_N 137 YVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKF 196 (199)
T ss_dssp HHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCC
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccc
Confidence 9999999999999999999999999999999999999999999999654 666666543
No 26
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.96 E-value=8.9e-29 Score=200.39 Aligned_cols=133 Identities=17% Similarity=0.130 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---C--CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---Q--GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~--~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.++++|++++++++++..++++++++++.| . .+|++++||||||.+||+||++||+|++.+++++|+|+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~ 167 (244)
T 1ryp_G 88 GREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQS 167 (244)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECCChHH
Confidence 68899999999999999999999999999765 2 359999999999998999999999999999999999999999
Q ss_pred HHHHHHhh---hcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEec---CCeEEecceeC
Q 030476 77 AMAMFESK---YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK---GHKEYLRNHLL 134 (177)
Q Consensus 77 a~~~Le~~---~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k---~g~~~~~~~~~ 134 (177)
++++||+. |+++||++||++++++||..++++|..++.+++|++|++ +|.+.+.|.++
T Consensus 168 a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~ 231 (244)
T 1ryp_G 168 AKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL 231 (244)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHH
T ss_pred HHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHH
Confidence 99999997 999999999999999999999999998899999999998 88887765543
No 27
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.96 E-value=7.2e-29 Score=199.44 Aligned_cols=132 Identities=21% Similarity=0.222 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----CCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----QGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~-----~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.+++.|++++|++++++.++++++++++.| ..+|++++||||||.+||+||++||+|++.+++++|+|+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~ 166 (233)
T 1ryp_F 87 LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQG 166 (233)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEESTTHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEECCCcHH
Confidence 78999999999999999999999999999654 2369999999999998999999999999999999999999999
Q ss_pred HHHHHHhhhcC--CC--CHHHHHHHHHHHHHHhhhcc-CCCCCcEEEEEEecC-CeEEecceeC
Q 030476 77 AMAMFESKYKE--GL--TKDEGIQLVVDAICSGIFND-LGSGSNVDVCVITKG-HKEYLRNHLL 134 (177)
Q Consensus 77 a~~~Le~~~~~--~m--t~eeai~l~~~al~~~~~~D-~~sg~~vev~vi~k~-g~~~~~~~~~ 134 (177)
++++||+.|++ +| |+|||++++++||..++ +| ..++.+++|++|+++ |.+++.+.++
T Consensus 167 a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei 229 (233)
T 1ryp_F 167 AKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAV 229 (233)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGG
T ss_pred HHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHH
Confidence 99999999999 99 99999999999999999 77 568999999999999 6777766654
No 28
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.96 E-value=1.6e-28 Score=201.07 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.++++|+++++++++++.++++++++++.|. .+|++++||||||.+||+||++||+|++.+++++|+|+|+..
T Consensus 88 ~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~ 167 (263)
T 1iru_F 88 MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQS 167 (263)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTTHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcCcccHH
Confidence 789999999999999999999999999997542 369999999999998999999999999999999999999999
Q ss_pred HHHHHHhhhcC--CCCHHHHHHHHHHHHHHhhhcc-CCCCCcEEEEEEecC-CeEEecceeC
Q 030476 77 AMAMFESKYKE--GLTKDEGIQLVVDAICSGIFND-LGSGSNVDVCVITKG-HKEYLRNHLL 134 (177)
Q Consensus 77 a~~~Le~~~~~--~mt~eeai~l~~~al~~~~~~D-~~sg~~vev~vi~k~-g~~~~~~~~~ 134 (177)
++++||+.|++ +||+|||++++++||..++++| ..++++++|++|+++ +.+++.+.++
T Consensus 168 a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei 229 (263)
T 1iru_F 168 ARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDV 229 (263)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGG
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHH
Confidence 99999999998 9999999999999999999999 478999999999999 6777766655
No 29
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.96 E-value=2.3e-28 Score=197.93 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh---cC--CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFN---YQ--GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~---~~--~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++.++++|+++++++++++.++++++++++. +. .+|++++||||||. +||+||++||+|++.+++++|+|+|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~ 173 (246)
T 1iru_A 94 ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQT 173 (246)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcH
Confidence 7899999999999999999999999988533 32 35999999999997 789999999999999999999999999
Q ss_pred HHHHHHHhhhcC--CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe--EEecce
Q 030476 76 AAMAMFESKYKE--GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK--EYLRNH 132 (177)
Q Consensus 76 ~a~~~Le~~~~~--~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~--~~~~~~ 132 (177)
.++++||+.|++ +||++||++++++||..+.++| .++++++|++|+++|. +++.+.
T Consensus 174 ~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ 233 (246)
T 1iru_A 174 ESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEA 233 (246)
T ss_dssp HHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHH
T ss_pred HHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHH
Confidence 999999999999 9999999999999999999999 7899999999999996 444333
No 30
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.96 E-value=1.3e-28 Score=201.17 Aligned_cols=125 Identities=19% Similarity=0.182 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++.++++|+++++++++++.++++++++++.++ .+|++++||||||. +||+||++||+|++.+++++|+|+|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 169 (261)
T 1iru_C 90 LRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSA 169 (261)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccH
Confidence 788999999999999999999999999998774 25999999999996 789999999999999999999999999
Q ss_pred HHHHHHHhhhcC-CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe
Q 030476 76 AAMAMFESKYKE-GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 126 (177)
Q Consensus 76 ~a~~~Le~~~~~-~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~ 126 (177)
.++++||+.|++ +||++||++++++||..++++|..++++++|++|+++|.
T Consensus 170 ~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~ 221 (261)
T 1iru_C 170 AAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG 221 (261)
T ss_dssp HHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCC
Confidence 999999999999 999999999999999999999999999999999999983
No 31
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.96 E-value=3.3e-28 Score=196.73 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---C--CcceeeEEEEEEe-CCCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---Q--GYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~--~~~gvslIlaG~D-~~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++.++++|+++++++++++.++++++++++.| . .+|++++|||||| .+||+||++||+|++.+++++|+|+|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 169 (244)
T 1ryp_C 90 ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTS 169 (244)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcH
Confidence 78899999999999999999999999998665 2 2599999999999 6889999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEe--cCCe
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT--KGHK 126 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~--k~g~ 126 (177)
.++++||+.|+++||+|||++++++||..++++|..++.+++|++|+ ++|.
T Consensus 170 ~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~ 222 (244)
T 1ryp_C 170 AAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDG 222 (244)
T ss_dssp HHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC
Confidence 99999999999999999999999999999999955579999999999 9874
No 32
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.96 E-value=2.1e-28 Score=197.59 Aligned_cols=129 Identities=20% Similarity=0.202 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc-----------CCcceeeEEEEEEe-CCCCeEEEEcCCCceeeeCeEE
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY-----------QGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFAT 69 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~-----------~~~~gvslIlaG~D-~~gp~Ly~idp~Gs~~~~~~~a 69 (177)
++.++++|++++|++++++.++++++++++.+ ..+|++++|||||| .+||+||++||+|++.+++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a 163 (242)
T 1ryp_E 84 ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKA 163 (242)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEE
Confidence 68899999999999999999999999988764 22699999999999 5789999999999999999999
Q ss_pred EeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe-EEecc
Q 030476 70 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK-EYLRN 131 (177)
Q Consensus 70 ~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~-~~~~~ 131 (177)
+|+|+..++++||+.|+++||++||++++++||..++++ ..++.+++|++|+++|. +++.+
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~ 225 (242)
T 1ryp_E 164 IGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDN 225 (242)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCH
T ss_pred ECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCH
Confidence 999999999999999999999999999999999999999 55789999999999986 44433
No 33
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.96 E-value=1.6e-28 Score=199.93 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEe-CCCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D-~~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++.++++|++++|++++++.++++++++++.|+ .+|++++|||||| ..||+||++||+|++.+++++|+|+|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 170 (254)
T 1iru_G 91 AREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQ 170 (254)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccH
Confidence 789999999999999999999999999998774 3599999999999 6789999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecC--C-eEEecce
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG--H-KEYLRNH 132 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~--g-~~~~~~~ 132 (177)
.++++||+.|+++||++||++++++||..++++|..++.+++|++|+++ | .+++.+.
T Consensus 171 ~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~ 230 (254)
T 1iru_G 171 AAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKD 230 (254)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHH
Confidence 9999999999999999999999999999999888767889999999987 5 5555443
No 34
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.6e-28 Score=199.95 Aligned_cols=131 Identities=23% Similarity=0.330 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++|.++++|+++++++++++.++++++++++.|. .+|+|++||||||.+||+||++||+|++.+++++|+|+|+.
T Consensus 95 ~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~aiGsgs~ 174 (264)
T 3h4p_A 95 RARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRP 174 (264)
T ss_dssp THHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEESTTHH
T ss_pred HHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEEECCCHH
Confidence 4789999999999999999999999999987663 25999999999999899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC--eEEeccee
Q 030476 76 AAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH--KEYLRNHL 133 (177)
Q Consensus 76 ~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g--~~~~~~~~ 133 (177)
.++++||+.|+++||++||++++++||..++++ .+|++++|++|++++ .+.+.+.+
T Consensus 175 ~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~e 232 (264)
T 3h4p_A 175 VVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEE 232 (264)
T ss_dssp HHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTT
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHH
Confidence 999999999999999999999999999999977 588999999999875 44443433
No 35
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.96 E-value=7e-28 Score=194.06 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC----CcceeeEEEEEEeCC-C-----CeEEEEcCCCceeee--CeEE
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ----GYVQAALVLGGVDCT-G-----PHLHTIYPHGSTDTL--PFAT 69 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~----~~~gvslIlaG~D~~-g-----p~Ly~idp~Gs~~~~--~~~a 69 (177)
++.+++.|+++++++++++.+++++++++++++ .+|++++||||||.+ | |+||++||+|++.++ +++|
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~a 138 (235)
T 1q5q_H 59 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHA 138 (235)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEE
T ss_pred HHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEE
Confidence 788999999999999999999999999998753 359999999999985 7 999999999999999 9999
Q ss_pred EeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCc--E-----EEEEEecCCeEEecceeC
Q 030476 70 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN--V-----DVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 70 ~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~--v-----ev~vi~k~g~~~~~~~~~ 134 (177)
+|+|+..++++||+.|+++||++||++++++||..++++|..+|+. + +|++|+++|.+.+.+.++
T Consensus 139 iGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei 210 (235)
T 1q5q_H 139 VGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETT 210 (235)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHH
T ss_pred ECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHH
Confidence 9999999999999999999999999999999999999999987753 3 999999999887765544
No 36
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.96 E-value=3.3e-28 Score=196.48 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc---C-------CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEe
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNY---Q-------GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMG 71 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~---~-------~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G 71 (177)
++.++++|+++++++++++.++++++++++.| . .+|++++||||||.+||+||++||+|++.+++++|+|
T Consensus 92 ~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG 171 (241)
T 1iru_E 92 ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIG 171 (241)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEEecceEEEC
Confidence 68899999999999999999999999998655 2 2699999999999888999999999999999999999
Q ss_pred CChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe
Q 030476 72 SGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 126 (177)
Q Consensus 72 ~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~ 126 (177)
+|+..++++||+.|+++||+|||++++++||..+.++ ..++.+++|++|+++|.
T Consensus 172 sgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 172 SASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN 225 (241)
T ss_dssp TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC
T ss_pred CCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC
Confidence 9999999999999999999999999999999999999 56799999999999985
No 37
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.96 E-value=7.2e-28 Score=195.77 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHH----HHhcCCcceeeEEEEEEeC----CCCeEEEEcCCCceee-eCeEEEe
Q 030476 2 VSSQLQLHRYHTG-RESRVVTALTLLKKH----LFNYQGYVQAALVLGGVDC----TGPHLHTIYPHGSTDT-LPFATMG 71 (177)
Q Consensus 2 lr~e~~~~~~~~g-~~~~v~~~a~~l~~~----l~~~~~~~gvslIlaG~D~----~gp~Ly~idp~Gs~~~-~~~~a~G 71 (177)
++.++++|++.++ .+++++.+++++++. +++...+|+|++||||||. +||+||++||+|++.+ ++++|+|
T Consensus 78 ~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~G 157 (248)
T 3mi0_A 78 GIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMG 157 (248)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEES
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEEC
Confidence 3556667799999 899999999998854 3444457999999999998 7899999999999995 9999999
Q ss_pred CChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhh-------hccCCCCCcEEEEEEecCC
Q 030476 72 SGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI-------FNDLGSGSNVDVCVITKGH 125 (177)
Q Consensus 72 ~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~-------~~D~~sg~~vev~vi~k~g 125 (177)
+|+..++++||++|+++||+|||++++++||..++ .+++ ++++++|+||+++|
T Consensus 158 sgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~-~~~~iev~vv~~~g 217 (248)
T 3mi0_A 158 GTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTL-GVASLEVAVLDANR 217 (248)
T ss_dssp SCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTS
T ss_pred ccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCccccc-CCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999 5665 67999999999998
No 38
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.95 E-value=9.2e-28 Score=198.95 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
+|.++++|++++++++++..++++++++++.|+ .+|+|++||||||.+||+||++||+|++.+++++|+|+|+..
T Consensus 92 lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~ 171 (288)
T 3nzj_F 92 GREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQS 171 (288)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHH
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHH
Confidence 788999999999999999999999999998763 259999999999999999999999999999999999999999
Q ss_pred HHHHHHhh---hcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEec
Q 030476 77 AMAMFESK---YKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 123 (177)
Q Consensus 77 a~~~Le~~---~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k 123 (177)
++++||+. |+++||++||++++++||..++++|..++..++|+||++
T Consensus 172 a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 172 AKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred HHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 99999999 999999999999999999999999988888999999999
No 39
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.95 E-value=1.7e-27 Score=192.24 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC---C--cceeeEEEEEEeC--CCCeEEEEcCCCceeeeCeEEEeCCh
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ---G--YVQAALVLGGVDC--TGPHLHTIYPHGSTDTLPFATMGSGS 74 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~---~--~~gvslIlaG~D~--~gp~Ly~idp~Gs~~~~~~~a~G~gs 74 (177)
++.++++|+++++++++++.++++++++++.++ + +|++++||||||. +||+||++||+|++.+++++|+|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs 166 (241)
T 1ryp_D 87 ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNS 166 (241)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCc
Confidence 788999999999999999999999999998762 2 5999999999998 78999999999999999999999999
Q ss_pred HHHHHHHHhhh---cCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC-eEEecceeC
Q 030476 75 LAAMAMFESKY---KEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLL 134 (177)
Q Consensus 75 ~~a~~~Le~~~---~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g-~~~~~~~~~ 134 (177)
..++++||+.| +++||+|||++++++||..+++ .++++++|++|+++| .+++.+.++
T Consensus 167 ~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei 227 (241)
T 1ryp_D 167 KTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEI 227 (241)
T ss_dssp HHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHH
T ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHH
Confidence 99999999999 9999999999999999999985 578999999999996 666554433
No 40
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.95 E-value=1.3e-27 Score=193.51 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC---C--cceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ---G--YVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLA 76 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~---~--~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~ 76 (177)
++.++++|+++++++++++.++++++++++.|. + +|++++|||||| +||+||++||+|++.+++++|+|+|+..
T Consensus 92 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~ 170 (246)
T 1j2p_A 92 ARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIGMGRMA 170 (246)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEESTTHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEECCCcHH
Confidence 688999999999999999999999999997653 2 599999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEe-c-CCeEEecceeC
Q 030476 77 AMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT-K-GHKEYLRNHLL 134 (177)
Q Consensus 77 a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~-k-~g~~~~~~~~~ 134 (177)
++++||+.|+++||++||++++++||..+.++ ..+|++++|++|+ + +|.+++.+.++
T Consensus 171 a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei 229 (246)
T 1j2p_A 171 VTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEEL 229 (246)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHH
Confidence 99999999999999999999999999999998 6789999999999 6 46777655544
No 41
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.95 E-value=9.7e-28 Score=194.64 Aligned_cols=130 Identities=19% Similarity=0.287 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEe-CCCCeEEEEcCCCceeeeCeEEEeCChH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSL 75 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D-~~gp~Ly~idp~Gs~~~~~~~a~G~gs~ 75 (177)
++.++++|++++++++++..++++++++++.|+ .+|++++|||||| .+||+||++||+|++.+++++|+|+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~ 166 (248)
T 1iru_D 87 ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAK 166 (248)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcH
Confidence 788999999999999999999999999997763 2699999999999 6889999999999999999999999999
Q ss_pred HHHHHHHhhhcCCC--CHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCC-eEEecceeC
Q 030476 76 AAMAMFESKYKEGL--TKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGH-KEYLRNHLL 134 (177)
Q Consensus 76 ~a~~~Le~~~~~~m--t~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g-~~~~~~~~~ 134 (177)
.++++||+.|+++| |++||++++++||..+++ .++++++|++|+++| .+++.+.++
T Consensus 167 ~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei 225 (248)
T 1iru_D 167 SVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEI 225 (248)
T ss_dssp HHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHH
T ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHH
Confidence 99999999999999 999999999999999886 468999999999998 666655544
No 42
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.95 E-value=1.9e-27 Score=197.54 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC----CcceeeEEEEEEeCC-C-----CeEEEEcCCCceeee--CeEE
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ----GYVQAALVLGGVDCT-G-----PHLHTIYPHGSTDTL--PFAT 69 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~----~~~gvslIlaG~D~~-g-----p~Ly~idp~Gs~~~~--~~~a 69 (177)
++.+++.|+++++++++++.+++++++++++++ .+|++++||||||.+ | |+||++||+|++.++ +++|
T Consensus 124 ~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~A 203 (294)
T 1q5r_H 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHA 203 (294)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEE
T ss_pred HHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEE
Confidence 688999999999999999999999999998764 359999999999985 6 999999999999999 8999
Q ss_pred EeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCc--E-----EEEEEecCCeEEecceeC
Q 030476 70 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN--V-----DVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 70 ~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~--v-----ev~vi~k~g~~~~~~~~~ 134 (177)
+|+|+.+++++||+.|+++||+|||++++++||..++++|+.+|+. + +|++|+++|++.+.+.++
T Consensus 204 iGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei 275 (294)
T 1q5r_H 204 VGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETT 275 (294)
T ss_dssp ESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHH
T ss_pred EecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHH
Confidence 9999999999999999999999999999999999999999987653 6 999999999887755543
No 43
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.95 E-value=3.1e-27 Score=193.04 Aligned_cols=130 Identities=16% Similarity=0.235 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHHH---HhcC-CcceeeEEEEEEe----CCCCeEEEEcCCCcee-eeCeEEEe
Q 030476 2 VSSQLQLHRYHTG-RESRVVTALTLLKKHL---FNYQ-GYVQAALVLGGVD----CTGPHLHTIYPHGSTD-TLPFATMG 71 (177)
Q Consensus 2 lr~e~~~~~~~~g-~~~~v~~~a~~l~~~l---~~~~-~~~gvslIlaG~D----~~gp~Ly~idp~Gs~~-~~~~~a~G 71 (177)
++.++++|++.++ ++++++.+++++++++ |.++ .+|+|++|||||| ..||+||++||+|++. +++++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG 157 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMG 157 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEES
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEEC
Confidence 6789999999998 4999999999999953 3333 4699999999999 6889999999999999 88999999
Q ss_pred CChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhh-----hccCCCCCcEEEEEEecC----CeEEecce
Q 030476 72 SGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI-----FNDLGSGSNVDVCVITKG----HKEYLRNH 132 (177)
Q Consensus 72 ~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~-----~~D~~sg~~vev~vi~k~----g~~~~~~~ 132 (177)
+|+..++++||+.|+++||++||++++++||..++ ++|+ ++.+++|++|+++ +.+.+.+.
T Consensus 158 ~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ 226 (259)
T 1q5q_A 158 GTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGT 226 (259)
T ss_dssp SSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHH
T ss_pred CChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHH
Confidence 99999999999999999999999999999999999 8999 8999999999999 45555443
No 44
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.94 E-value=2.4e-26 Score=186.53 Aligned_cols=125 Identities=16% Similarity=0.273 Sum_probs=114.5
Q ss_pred HHHHHHH-HHHhhCCCCCHHHHHHHHHHHHHhcC-----CcceeeEEEEEEeC-CCCeEEEEcCCCceeeeCeEEEeCCh
Q 030476 2 VSSQLQL-HRYHTGRESRVVTALTLLKKHLFNYQ-----GYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGS 74 (177)
Q Consensus 2 lr~e~~~-~~~~~g~~~~v~~~a~~l~~~l~~~~-----~~~gvslIlaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs 74 (177)
++.+++. |++.++.+++++.+++.+++++..+. .+|++++||||||. +||+||++||+|++.+++++|+|+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs 168 (250)
T 1ryp_B 89 SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGS 168 (250)
T ss_dssp HHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCcc
Confidence 6788999 99999999999999888888775542 35999999999997 68999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 75 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 75 ~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
..++++||+.|+++||+|||++++++||..+++++. +|++++|++|++++..
T Consensus 169 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~~~ 220 (250)
T 1ryp_B 169 VAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPD 220 (250)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGG
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccccc
Confidence 999999999999999999999999999999998876 7999999999998643
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.94 E-value=7.7e-27 Score=193.64 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC----cceeeEEEEEEeCC-C-----CeEEEEcCCCcee--eeCeEE
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG----YVQAALVLGGVDCT-G-----PHLHTIYPHGSTD--TLPFAT 69 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~----~~gvslIlaG~D~~-g-----p~Ly~idp~Gs~~--~~~~~a 69 (177)
++.+++.|++.++.+++++.+++++++++++++. +|+|++||||||.. + |+||++||+|++. +++++|
T Consensus 116 lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~a 195 (291)
T 2jay_A 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQA 195 (291)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEE
T ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEE
Confidence 7899999999999999999999999999998753 49999999999984 4 8999999999999 899999
Q ss_pred EeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCc--E-----EEEEEecCCeEEecceeC
Q 030476 70 MGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSN--V-----DVCVITKGHKEYLRNHLL 134 (177)
Q Consensus 70 ~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~--v-----ev~vi~k~g~~~~~~~~~ 134 (177)
+|+|+..|+++||+.|+++||++||++++++||..++++|+.+++. + +|++|+++|.+.+.+.++
T Consensus 196 iGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~~~ei 267 (291)
T 2jay_A 196 VGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRI 267 (291)
T ss_dssp ESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECCHHHH
T ss_pred EecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcCHHHH
Confidence 9999999999999999999999999999999999999999987753 2 699999999888766554
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.85 E-value=7.2e-21 Score=146.42 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeC---eEEEeCChHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLP---FATMGSGSLAAM 78 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~---~~a~G~gs~~a~ 78 (177)
++.++++|++ ++...+..+++.++++++.-.++.+++|+| ||+||++||+|++.+++ +.|+|+|+..|+
T Consensus 60 ~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~r~~~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~ 131 (174)
T 1g3k_A 60 FERKLEMHQG------HLLKSAVELAKDWRTDRALRKLEAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYAL 131 (174)
T ss_dssp HHHHHHHTTT------CHHHHHHHHHHHHHHSTTGGGCCCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHH
T ss_pred HHHHHHHhcC------cHHHHHHHHHHHHHhccCcCcceEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHH
Confidence 6788888886 556778889999998866312457788888 89999999999999988 999999999999
Q ss_pred HHHHhhhc-CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEe
Q 030476 79 AMFESKYK-EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 122 (177)
Q Consensus 79 ~~Le~~~~-~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~ 122 (177)
++||+.|+ ++||.+ +++++||..+.+||..++++++|++|+
T Consensus 132 ~~le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 132 SAARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HHHHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HHHHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 99999999 999955 799999999999999999999999985
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.83 E-value=6.6e-20 Score=140.57 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC--cceeeEEEEEEeCCCCeEEEEcCCCceeeeC--eEEEeCChHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG--YVQAALVLGGVDCTGPHLHTIYPHGSTDTLP--FATMGSGSLAA 77 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~--~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~--~~a~G~gs~~a 77 (177)
++.++++|+++ .+..++++ .+.++++++ +|++++|+| | ||+||++||+|++.+++ +.|+|+|+..+
T Consensus 60 ~~~~~~~~~~~-----~~~~~~~l-~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a 129 (171)
T 1m4y_A 60 FEAKLREWGGN-----LTKAAVEL-AKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYA 129 (171)
T ss_dssp HHHHHHHTTTC-----HHHHHHHH-HHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHH
T ss_pred HHHHHHHhccc-----HHHHHHHH-HHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHH
Confidence 67888888865 25555555 567777654 499999888 6 89999999999999988 99999999999
Q ss_pred HHHHHhhhc-CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 78 MAMFESKYK-EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 78 ~~~Le~~~~-~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
+++||+.|+ ++||. .+++++||..+.+||..+|++++|.++
T Consensus 130 ~~~le~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 130 LAAAKALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 999999999 99997 678999999999999999999999864
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.82 E-value=9e-20 Score=141.18 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC--cceeeEEEEEEeCCCCeEEEEcCCCceee--eCeEEEeCChHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQG--YVQAALVLGGVDCTGPHLHTIYPHGSTDT--LPFATMGSGSLAA 77 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~--~~gvslIlaG~D~~gp~Ly~idp~Gs~~~--~~~~a~G~gs~~a 77 (177)
++.++++|+ | +....+..+++.++++++ +|++++|+| | ||+||++||+|++.+ +++.|+|+|+..|
T Consensus 66 ~~~~~~~y~---g---~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d--~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a 135 (180)
T 2z3b_A 66 FEAKLEEYN---G---NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N--QDTLLLVSGTGEVIEPDDGILAIGSGGNYA 135 (180)
T ss_dssp HHHHHHHTT---T---CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C--SSCEEEECTTCCEECCSSSEEEESTTHHHH
T ss_pred HHHHHHHhc---C---ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c--CCeEEEECCCCcEEEeCCCEEEECCCHHHH
Confidence 678888888 3 334444567888888765 499999999 4 799999999999998 4999999999999
Q ss_pred HHHHHhhhcC---CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 030476 78 MAMFESKYKE---GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 121 (177)
Q Consensus 78 ~~~Le~~~~~---~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi 121 (177)
+++||+.|++ +||.|| ++.+||..+.+||..+|++++|.+|
T Consensus 136 ~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 136 LAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp HHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred HHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 9999999998 999999 5789999999999999999999988
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=46.21 E-value=38 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEE
Q 030476 86 KEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 128 (177)
Q Consensus 86 ~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~ 128 (177)
.+.+|+++|.+++..++..+.++. -.+.|.|++..|.-.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~ll 100 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNTL 100 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCEE
Confidence 357999999999999999988754 479999999888543
No 50
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=45.07 E-value=62 Score=23.70 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecc
Q 030476 75 LAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRN 131 (177)
Q Consensus 75 ~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~ 131 (177)
..|.+.++..+. .++.+||.+.+++.|+.....+ +.--+.+++.+|..+.-|
T Consensus 34 ~~a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g~----~~gY~fv~d~~g~~l~hP 85 (181)
T 3ub6_A 34 KILEQGIHEYYK-SFDNDTARKMALDYFKRINDDK----GMIYMVVVDKNGVVLFDP 85 (181)
T ss_dssp HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTC----SSCEEEEECTTCBEEECT
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCccCC----CCCEEEEEeCCCCEEEeC
Confidence 345666666655 4899999999999998866422 112467788999877655
No 51
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=42.66 E-value=26 Score=25.15 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 87 EGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 87 ~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
+.+|.++|.+++..+...+.++ +-.+.|.|++..|..
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~l 46 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNT 46 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCE
Confidence 4589999999999999998765 357999999988754
No 52
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=42.01 E-value=44 Score=23.41 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=40.2
Q ss_pred eEE-EEcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 030476 52 HLH-TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICS 104 (177)
Q Consensus 52 ~Ly-~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~ 104 (177)
.|| .+|+.|......|.+.|-+...|-+-+=..+-.++|.+||..+..+.+..
T Consensus 43 ~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~ 96 (129)
T 3lvl_A 43 KLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAE 96 (129)
T ss_dssp EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHH
T ss_pred EEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 444 56767888888999999887777766666666799999999887765533
No 53
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=35.34 E-value=32 Score=21.36 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhcc
Q 030476 88 GLTKDEGIQLVVDAICSGIFND 109 (177)
Q Consensus 88 ~mt~eeai~l~~~al~~~~~~D 109 (177)
+||.|+|.++.++.++..+-+|
T Consensus 29 ~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 29 AMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988877665
No 54
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=35.00 E-value=33 Score=21.47 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhcc
Q 030476 88 GLTKDEGIQLVVDAICSGIFND 109 (177)
Q Consensus 88 ~mt~eeai~l~~~al~~~~~~D 109 (177)
+||.|+|.++.++.++..+-+|
T Consensus 24 ~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 24 NMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988877665
No 55
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=34.34 E-value=85 Score=22.81 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=42.2
Q ss_pred eEE-EEc-CCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhh
Q 030476 52 HLH-TIY-PHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 106 (177)
Q Consensus 52 ~Ly-~id-p~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~~~ 106 (177)
.|+ .+| ..|......|.+.|-+...|-+-+=..+-.++|++||..+..+.+...+
T Consensus 41 ~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~L 97 (157)
T 2z7e_A 41 LFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEEL 97 (157)
T ss_dssp EEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHH
T ss_pred EEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHh
Confidence 455 467 5678888899999988888877777677789999999998777554433
No 56
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=30.10 E-value=89 Score=18.50 Aligned_cols=35 Identities=14% Similarity=0.390 Sum_probs=24.6
Q ss_pred HHHHHHHhhhc-CCCCHH--HHHHHHHHHHHHhhhccC
Q 030476 76 AAMAMFESKYK-EGLTKD--EGIQLVVDAICSGIFNDL 110 (177)
Q Consensus 76 ~a~~~Le~~~~-~~mt~e--eai~l~~~al~~~~~~D~ 110 (177)
.+..+|..... ..++.| |.++.|++||..+..-|.
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 44556665544 456665 788999999999987554
No 57
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=29.73 E-value=2.2e+02 Score=22.99 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=41.8
Q ss_pred CCCceeeeC---eEEEeCChHHHHHHHH----hhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe
Q 030476 58 PHGSTDTLP---FATMGSGSLAAMAMFE----SKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 126 (177)
Q Consensus 58 p~Gs~~~~~---~~a~G~gs~~a~~~Le----~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~ 126 (177)
-.|+|.... ..++|.|..++...+- .+.+..++++||.+.+++-+..-+ ++..=+..|+++|.
T Consensus 206 GaG~yAdn~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 275 (310)
T 4gdv_A 206 GAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRV------KGLGGLIVVSKTGD 275 (310)
T ss_dssp TTTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH------CCCEEEEEEETTSC
T ss_pred CceeEecCCcEEEEeecCcHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhc------CCcEEEEEEeCCCC
Confidence 366666543 5689999888776444 233568999999988877665533 12344566788874
No 58
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=29.42 E-value=1.3e+02 Score=21.57 Aligned_cols=57 Identities=14% Similarity=0.023 Sum_probs=35.8
Q ss_pred CeEEEeCChHHHHHHHHh----hhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeE
Q 030476 66 PFATMGSGSLAAMAMFES----KYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 127 (177)
Q Consensus 66 ~~~a~G~gs~~a~~~Le~----~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~ 127 (177)
-..++|.|...+...+-. +.+..++++||.+-+++-|.... .+..--+..++++|..
T Consensus 48 a~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~-----~~~~ggvIa~d~~G~~ 108 (141)
T 1apy_B 48 AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHF-----PEFFGAVICANVTGSY 108 (141)
T ss_dssp EEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTSCE
T ss_pred EEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----CCCcEEEEEEeCCCCE
Confidence 367889887665443322 34468999999888776554422 1123456777888854
No 59
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=28.99 E-value=1.1e+02 Score=20.32 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=23.8
Q ss_pred HHHHHHHhhhc-CCCCHH--HHHHHHHHHHHHhhhcc
Q 030476 76 AAMAMFESKYK-EGLTKD--EGIQLVVDAICSGIFND 109 (177)
Q Consensus 76 ~a~~~Le~~~~-~~mt~e--eai~l~~~al~~~~~~D 109 (177)
.+..+|..... ..++.| |.++.|++||..++.-|
T Consensus 25 sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 44556655544 456765 78899999999998654
No 60
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=28.31 E-value=2.3e+02 Score=22.75 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=42.8
Q ss_pred CCceeee---CeEEEeCChHHHHHHHH----hhhcCCCCHHHHHHHHHHHHHHhhhcc-C-CCCCcEEEEEEecCCeE
Q 030476 59 HGSTDTL---PFATMGSGSLAAMAMFE----SKYKEGLTKDEGIQLVVDAICSGIFND-L-GSGSNVDVCVITKGHKE 127 (177)
Q Consensus 59 ~Gs~~~~---~~~a~G~gs~~a~~~Le----~~~~~~mt~eeai~l~~~al~~~~~~D-~-~sg~~vev~vi~k~g~~ 127 (177)
.|+|... -..++|.|...+...+- .+.+..+++++|.+-+++-+...+.+. - ..+...=+..++++|..
T Consensus 189 aG~yAd~~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~~A~~~ai~~~~~~~~~~~~~~~~~~gG~Iavd~~G~~ 266 (295)
T 1p4k_A 189 AGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEY 266 (295)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSCE
T ss_pred ceeeecCCcEEEEeecccHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCceEEEEEEcCCCCE
Confidence 4555542 36789999887766443 233468999999998887776543211 0 11233445567888844
No 61
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=27.83 E-value=1.1e+02 Score=22.41 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=41.4
Q ss_pred eEEEEcCCCceeeeCeEEEe-CChHHHHHHHHhhhc-------------------CCCCHHHHHHHHHHHHHHh
Q 030476 52 HLHTIYPHGSTDTLPFATMG-SGSLAAMAMFESKYK-------------------EGLTKDEGIQLVVDAICSG 105 (177)
Q Consensus 52 ~Ly~idp~Gs~~~~~~~a~G-~gs~~a~~~Le~~~~-------------------~~mt~eeai~l~~~al~~~ 105 (177)
.+..+.|-|......-...| ..+..+...+++.++ .++|++.|.++|.+.|..+
T Consensus 75 ~iId~sPMGCrTGFYl~l~G~~~~~~v~~~~~~~l~~il~~~eVPga~~~qCGny~~hsL~~Ak~~A~~~L~~~ 148 (157)
T 1j98_A 75 DIIDISPMGCQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQD 148 (157)
T ss_dssp EEEEEEECTTSSEEEEEEEECCCHHHHHHHHHHHHHHHTTCCSCTTCSTTTCTTTTCCCHHHHHHHHHHHHTSC
T ss_pred CEEEeCCcCcccccEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCCCCChhcCCChHHCCHHHHHHHHHHHHHHh
Confidence 56677788988888888888 566677776666332 3689999999999988654
No 62
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=26.54 E-value=1.7e+02 Score=20.73 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=38.4
Q ss_pred eEEE-EcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 030476 52 HLHT-IYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 102 (177)
Q Consensus 52 ~Ly~-idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al 102 (177)
.|+- +| .|......|.+.|-+...|-+-+=..+-.+.|.+||..+...-.
T Consensus 46 ~l~lkv~-~~~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~~~ 96 (147)
T 1xjs_A 46 RLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKIFS 96 (147)
T ss_dssp EEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHHHH
T ss_pred EEEEEEC-CCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4553 45 58888889999998887777766666667999999999877643
No 63
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=25.20 E-value=93 Score=19.53 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhcC-CCCHHHHHHHHHH
Q 030476 75 LAAMAMFESKYKE-GLTKDEGIQLVVD 100 (177)
Q Consensus 75 ~~a~~~Le~~~~~-~mt~eeai~l~~~ 100 (177)
..|+-+|..+|++ +.|+-|.++.|+.
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAks 46 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAKS 46 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHHh
Confidence 4677889999998 9999999998764
No 64
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=24.78 E-value=2e+02 Score=20.74 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=38.5
Q ss_pred eEE-EEcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 030476 52 HLH-TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 101 (177)
Q Consensus 52 ~Ly-~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~a 101 (177)
.|| .+| .|......|.+.|-+...|-+-+=..+-.+.|.+||..+...-
T Consensus 45 ~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f 94 (159)
T 1su0_B 45 SLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIF 94 (159)
T ss_dssp EEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred EEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 454 456 5888888999999888888777666667799999999887763
No 65
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=24.13 E-value=1.4e+02 Score=18.93 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHhhhc-CCCCHH--HHHHHHHHHHHHhhhccC
Q 030476 76 AAMAMFESKYK-EGLTKD--EGIQLVVDAICSGIFNDL 110 (177)
Q Consensus 76 ~a~~~Le~~~~-~~mt~e--eai~l~~~al~~~~~~D~ 110 (177)
.+..+|..... ..++.| |.++.|++||..+..-|.
T Consensus 13 sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 13 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 44556665544 456665 788999999999987553
No 66
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.26 E-value=60 Score=20.48 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe
Q 030476 88 GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 126 (177)
Q Consensus 88 ~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~ 126 (177)
.|+.+||+..+.+.|..+..+-....+.-.+.||+-.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 589999999988888876641000012346778886665
No 67
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=23.08 E-value=80 Score=20.52 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCe
Q 030476 88 GLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHK 126 (177)
Q Consensus 88 ~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~ 126 (177)
.|+.+||+..+.+.|..+...-..+.+.-.|.||+-.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 689999999998888876521000112346888887665
No 68
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=22.87 E-value=1.9e+02 Score=21.20 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=39.8
Q ss_pred EEEEcCCCceeeeCeEEEe-CChHHHHHHHHhhhc-------------------CCCCHHHHHHHHHHHHHH
Q 030476 53 LHTIYPHGSTDTLPFATMG-SGSLAAMAMFESKYK-------------------EGLTKDEGIQLVVDAICS 104 (177)
Q Consensus 53 Ly~idp~Gs~~~~~~~a~G-~gs~~a~~~Le~~~~-------------------~~mt~eeai~l~~~al~~ 104 (177)
+..+.|-|......-...| ..+..+...+++.++ .++|++.|.++|.+.|..
T Consensus 72 iId~sPMGCrTGFYlil~G~~~~~~v~~~~~~~l~~Il~~~eVPga~~~qCGny~~HsL~~Ak~~A~~~L~~ 143 (160)
T 1j6x_A 72 VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDK 143 (160)
T ss_dssp EEEEEECTTSSEEEEEEESCCCHHHHHHHHHHHHHHHTTCSSCTTCSTTTCTTTTSCCHHHHHHHHHHHHHT
T ss_pred eEEECCcCcchhcEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCCCCChhcCCChHHCCHHHHHHHHHHHHHh
Confidence 5666788888888888888 566667776666332 378999999999999976
No 69
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=21.75 E-value=2.1e+02 Score=19.98 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=39.4
Q ss_pred eEE-EEcCCCceeeeCeEEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 030476 52 HLH-TIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICS 104 (177)
Q Consensus 52 ~Ly-~idp~Gs~~~~~~~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~al~~ 104 (177)
.|+ .++ .|......|.+.|-+...|-+-+=..+-.+.|.+||.++...-+..
T Consensus 44 ~l~l~v~-~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~~~m 96 (138)
T 2qq4_A 44 EVMVLLE-GDTIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAM 96 (138)
T ss_dssp EEEEEEE-TTEEEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHH
T ss_pred EEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 344 344 6888888999999888887776666667799999999887665443
No 70
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=21.17 E-value=88 Score=21.58 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=22.5
Q ss_pred EEEeCChHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 030476 68 ATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDA 101 (177)
Q Consensus 68 ~a~G~gs~~a~~~Le~~~~~~mt~eeai~l~~~a 101 (177)
|+.|.|.....-.+--....+++.++|++.+++.
T Consensus 116 C~aG~~RTg~~~a~~L~~~~~~~~~~a~~~vr~~ 149 (167)
T 3s4o_A 116 CVAGLGRAPILVALALVEYGNVSALDAIALIREK 149 (167)
T ss_dssp CSSSSSHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456666655554444445689999999887763
Done!