BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030477
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 111/163 (68%)
Query: 10 PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
PNIL+ LA + L++IN+G+L RE+ L+DG+D+E +C +++ED V D
Sbjct: 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 71
Query: 70 ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
EL++ M +GG IVDYHGCDFFPERWF V VL+T+ +VLY+RL RGY KLT+NI+CE
Sbjct: 72 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 131
Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
IFQVL EEA SY E+IV L S+ E++ N+ + W+ W
Sbjct: 132 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 174
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 111/163 (68%)
Query: 10 PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
PNIL+ LA + L++IN+G+L RE+ L+DG+D+E +C +++ED V D
Sbjct: 5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 64
Query: 70 ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
EL++ M +GG IVDYHGCDFFPERWF V VL+T+ +VLY+RL RGY KLT+NI+CE
Sbjct: 65 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 124
Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
IFQVL EEA SY E+IV L S+ E++ N+ + W+ W
Sbjct: 125 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 167
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 30 AESTQLRHINIGELVREKNLHDGWDDELECHVI---NEDLVCDELEDIM-EQGGNIVDYH 85
AE +H+ +G+LV+E + + +D EL+ H+I +ED + D +E IM +G ++VDYH
Sbjct: 32 AELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYH 91
Query: 86 GCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPED 145
+ FPERWF VVVL T VL++RLTKR Y+ AK N+E EI + EEA+++Y +D
Sbjct: 92 SSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDD 151
Query: 146 IVLALKSDTIEDITRNI 162
IVL ++DT+E + +
Sbjct: 152 IVLVRENDTLEQMAATV 168
>pdb|3HYF|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Active Site Inhibitor
pdb|3QIN|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Pyrimidinol Carboxylic Acid Inhibitor
pdb|3QIO|A Chain A, Crystal Structure Of Hiv-1 Rnase H With Engineered E. Coli
Loop And N- Hydroxy Quinazolinedione Inhibitor
Length = 150
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 111 RLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIE-----DITRNIAIL 165
+L K GY +TN ++ + +++ + I LAL+ +E D + I+
Sbjct: 26 KLGKAGY----VTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGII 81
Query: 166 TDWVRNWQPRS 176
T W+ NW+ R
Sbjct: 82 TQWIHNWKKRG 92
>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTD|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTE|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTE|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTX|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
pdb|2DTX|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
Length = 264
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 28 ALAESTQLRHINIGELVREKNLHDGWD---DELECHVINEDLVCDELEDIMEQGGNI 81
A+AE R ++ G V + ++HD + D +EC V N D V ++ I ++ G+I
Sbjct: 23 AIAE----RFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSI 75
>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of
Thermoplasma Acidophilum Aldohexose Dehydrogenase
(Aldt)
pdb|2ZK7|B Chain B, Structure Of A C-Terminal Deletion Mutant Of
Thermoplasma Acidophilum Aldohexose Dehydrogenase
(Aldt)
Length = 257
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 28 ALAESTQLRHINIGELVREKNLHDGWD---DELECHVINEDLVCDELEDIMEQGGNI 81
A+AE R ++ G V + ++HD + D +EC V N D V ++ I ++ G+I
Sbjct: 30 AIAE----RFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSI 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,969,751
Number of Sequences: 62578
Number of extensions: 192378
Number of successful extensions: 681
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 8
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)