Query 030477
Match_columns 176
No_of_seqs 122 out of 1730
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 14:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3347 Predicted nucleotide k 100.0 1.1E-33 2.5E-38 187.1 15.9 168 7-174 5-172 (176)
2 COG1936 Predicted nucleotide k 100.0 5.3E-28 1.2E-32 164.6 15.4 161 10-173 1-161 (180)
3 COG0703 AroK Shikimate kinase 99.9 4.3E-22 9.4E-27 137.0 7.6 154 9-166 2-166 (172)
4 PRK03839 putative kinase; Prov 99.9 3.6E-20 7.8E-25 131.0 16.5 148 11-167 2-152 (180)
5 PRK14532 adenylate kinase; Pro 99.9 3.8E-20 8.3E-25 131.7 14.7 152 11-167 2-186 (188)
6 PLN02200 adenylate kinase fami 99.8 1.8E-19 4E-24 132.0 17.7 166 5-172 39-228 (234)
7 KOG3079 Uridylate kinase/adeny 99.8 9.7E-20 2.1E-24 125.2 14.8 158 5-167 4-192 (195)
8 PRK14531 adenylate kinase; Pro 99.8 1.6E-19 3.4E-24 128.1 15.8 150 10-166 3-182 (183)
9 PRK13948 shikimate kinase; Pro 99.8 1.7E-20 3.6E-25 132.2 10.3 159 6-168 7-175 (182)
10 TIGR01359 UMP_CMP_kin_fam UMP- 99.8 3.7E-19 7.9E-24 126.1 16.7 156 11-166 1-182 (183)
11 PRK13808 adenylate kinase; Pro 99.8 7.2E-19 1.6E-23 133.5 17.6 156 11-171 2-196 (333)
12 PRK14527 adenylate kinase; Pro 99.8 7.2E-19 1.6E-23 125.5 16.1 157 5-166 2-190 (191)
13 COG1102 Cmk Cytidylate kinase 99.8 3.2E-19 6.9E-24 120.3 13.0 159 10-170 1-174 (179)
14 PRK14528 adenylate kinase; Pro 99.8 3.6E-19 7.7E-24 126.5 14.1 151 10-165 2-185 (186)
15 PRK00131 aroK shikimate kinase 99.8 3.7E-19 7.9E-24 125.0 13.3 156 6-167 1-170 (175)
16 PRK13949 shikimate kinase; Pro 99.8 3.8E-20 8.3E-25 129.4 8.2 149 10-163 2-166 (169)
17 PLN02674 adenylate kinase 99.8 5.7E-19 1.2E-23 129.3 14.6 155 7-166 29-243 (244)
18 PRK05057 aroK shikimate kinase 99.8 6.9E-20 1.5E-24 128.5 9.3 155 6-167 1-170 (172)
19 TIGR01360 aden_kin_iso1 adenyl 99.8 3.6E-18 7.8E-23 121.4 16.4 161 8-168 2-187 (188)
20 PRK13947 shikimate kinase; Pro 99.8 1.7E-19 3.6E-24 126.5 8.9 152 10-164 2-163 (171)
21 PRK04182 cytidylate kinase; Pr 99.8 1.2E-18 2.5E-23 123.1 13.3 158 10-168 1-173 (180)
22 PRK00625 shikimate kinase; Pro 99.8 1.7E-19 3.7E-24 126.3 7.8 147 11-163 2-168 (173)
23 PRK14530 adenylate kinase; Pro 99.8 1.2E-17 2.5E-22 121.4 17.5 153 10-167 4-212 (215)
24 PLN02459 probable adenylate ki 99.8 8.3E-18 1.8E-22 123.7 15.8 156 8-168 28-251 (261)
25 PLN02199 shikimate kinase 99.8 1.5E-18 3.2E-23 129.1 10.5 159 8-169 101-289 (303)
26 PRK02496 adk adenylate kinase; 99.8 1.3E-17 2.9E-22 118.3 14.6 150 10-166 2-182 (184)
27 TIGR01351 adk adenylate kinase 99.8 1.9E-17 4.1E-22 119.9 14.9 150 12-166 2-209 (210)
28 PRK00279 adk adenylate kinase; 99.8 1.5E-17 3.3E-22 120.8 14.4 152 11-167 2-213 (215)
29 TIGR02173 cyt_kin_arch cytidyl 99.8 3E-17 6.5E-22 115.0 15.3 154 10-166 1-170 (171)
30 PRK13946 shikimate kinase; Pro 99.8 4E-17 8.6E-22 115.8 15.7 158 8-169 9-177 (184)
31 PRK14529 adenylate kinase; Pro 99.8 3.5E-17 7.7E-22 118.5 14.3 151 11-166 2-222 (223)
32 PTZ00088 adenylate kinase 1; P 99.8 6E-17 1.3E-21 118.1 15.6 104 8-116 5-131 (229)
33 PRK14526 adenylate kinase; Pro 99.7 7.7E-17 1.7E-21 116.3 14.6 152 11-167 2-208 (211)
34 PRK03731 aroL shikimate kinase 99.7 2.1E-16 4.6E-21 110.8 14.0 153 10-167 3-169 (171)
35 PRK04040 adenylate kinase; Pro 99.7 6.8E-16 1.5E-20 109.7 16.1 106 9-114 2-130 (188)
36 PRK01184 hypothetical protein; 99.7 6.6E-16 1.4E-20 109.6 16.0 157 9-173 1-183 (184)
37 cd01428 ADK Adenylate kinase ( 99.7 2.6E-16 5.6E-21 112.4 13.9 103 11-118 1-128 (194)
38 PRK08154 anaerobic benzoate ca 99.7 2.5E-16 5.4E-21 120.1 14.6 162 5-169 129-302 (309)
39 PRK06762 hypothetical protein; 99.7 3.6E-16 7.9E-21 109.1 13.8 148 9-166 2-162 (166)
40 PRK06217 hypothetical protein; 99.7 3.4E-16 7.4E-21 111.0 13.7 102 10-117 2-106 (183)
41 PRK14021 bifunctional shikimat 99.7 2.6E-17 5.6E-22 133.7 8.9 158 7-168 4-176 (542)
42 COG1428 Deoxynucleoside kinase 99.7 1.1E-15 2.4E-20 107.8 15.3 78 94-171 126-212 (216)
43 COG0283 Cmk Cytidylate kinase 99.7 9.2E-16 2E-20 108.6 14.9 158 8-167 3-218 (222)
44 cd00464 SK Shikimate kinase (S 99.7 1.5E-16 3.2E-21 109.6 10.0 141 11-156 1-153 (154)
45 PRK08118 topology modulation p 99.7 1.4E-16 3E-21 111.3 9.5 96 10-115 2-99 (167)
46 PRK13951 bifunctional shikimat 99.7 1.3E-16 2.8E-21 127.9 10.1 145 11-162 2-155 (488)
47 PRK13973 thymidylate kinase; P 99.7 6.2E-15 1.3E-19 106.9 17.5 161 8-169 2-207 (213)
48 PF01202 SKI: Shikimate kinase 99.7 2.5E-17 5.3E-22 114.2 2.7 144 18-166 1-157 (158)
49 PTZ00451 dephospho-CoA kinase; 99.7 3.5E-15 7.5E-20 109.6 13.8 159 10-173 2-212 (244)
50 PRK13477 bifunctional pantoate 99.7 4.8E-15 1E-19 118.7 15.5 157 8-168 283-503 (512)
51 PLN02842 nucleotide kinase 99.7 5.9E-15 1.3E-19 117.4 15.2 151 13-169 1-203 (505)
52 PRK14730 coaE dephospho-CoA ki 99.6 9.7E-15 2.1E-19 104.4 14.5 152 10-167 2-193 (195)
53 PRK08233 hypothetical protein; 99.6 3.2E-15 6.9E-20 105.7 11.8 158 8-167 2-176 (182)
54 PRK00081 coaE dephospho-CoA ki 99.6 4E-15 8.7E-20 106.4 12.2 152 10-168 3-193 (194)
55 PRK14733 coaE dephospho-CoA ki 99.6 6.9E-15 1.5E-19 105.3 13.0 160 8-172 5-202 (204)
56 COG0563 Adk Adenylate kinase a 99.6 1.2E-14 2.7E-19 102.1 13.8 102 10-116 1-128 (178)
57 PRK13975 thymidylate kinase; P 99.6 3.3E-14 7.2E-19 101.7 15.3 157 9-167 2-189 (196)
58 PF00406 ADK: Adenylate kinase 99.6 4.7E-15 1E-19 102.0 10.4 96 14-114 1-122 (151)
59 COG3265 GntK Gluconate kinase 99.6 1.7E-14 3.8E-19 96.1 12.3 140 15-166 1-157 (161)
60 cd00227 CPT Chloramphenicol (C 99.6 1.9E-14 4E-19 101.4 13.3 151 8-166 1-174 (175)
61 COG0237 CoaE Dephospho-CoA kin 99.6 9E-15 1.9E-19 104.4 11.7 157 9-171 2-195 (201)
62 PRK08356 hypothetical protein; 99.6 5.4E-14 1.2E-18 100.7 15.8 156 9-170 5-194 (195)
63 PRK14734 coaE dephospho-CoA ki 99.6 3.5E-14 7.5E-19 101.9 13.6 155 10-171 2-197 (200)
64 PF13671 AAA_33: AAA domain; P 99.6 3.3E-15 7.1E-20 101.6 7.6 127 11-138 1-140 (143)
65 TIGR01313 therm_gnt_kin carboh 99.6 3.4E-14 7.5E-19 98.8 12.7 147 12-166 1-161 (163)
66 COG0125 Tmk Thymidylate kinase 99.6 1.9E-13 4.1E-18 98.1 16.7 161 8-169 2-204 (208)
67 PRK00023 cmk cytidylate kinase 99.6 7.1E-14 1.5E-18 102.0 14.7 159 8-168 3-221 (225)
68 PLN02422 dephospho-CoA kinase 99.6 4E-14 8.7E-19 103.1 13.1 154 10-170 2-196 (232)
69 KOG3354 Gluconate kinase [Carb 99.6 1.3E-13 2.8E-18 92.6 14.3 147 9-167 12-187 (191)
70 TIGR00017 cmk cytidylate kinas 99.6 4.7E-14 1E-18 102.3 13.0 105 10-116 3-159 (217)
71 cd02020 CMPK Cytidine monophos 99.6 9.6E-15 2.1E-19 99.7 8.9 103 11-115 1-103 (147)
72 PRK14732 coaE dephospho-CoA ki 99.6 6.9E-14 1.5E-18 100.0 13.1 153 11-170 1-192 (196)
73 PRK14731 coaE dephospho-CoA ki 99.6 1.3E-13 2.9E-18 99.6 14.6 157 8-170 4-204 (208)
74 PF13207 AAA_17: AAA domain; P 99.6 3.3E-15 7.2E-20 98.8 5.6 102 11-113 1-108 (121)
75 PRK07261 topology modulation p 99.6 1.3E-14 2.9E-19 101.7 8.0 96 10-115 1-99 (171)
76 TIGR00152 dephospho-CoA kinase 99.6 9.2E-14 2E-18 98.9 11.9 147 11-163 1-187 (188)
77 PRK00698 tmk thymidylate kinas 99.6 4.2E-13 9.2E-18 96.6 15.2 74 94-169 127-203 (205)
78 TIGR00041 DTMP_kinase thymidyl 99.5 2.9E-13 6.3E-18 96.8 13.6 153 8-162 2-195 (195)
79 cd02030 NDUO42 NADH:Ubiquinone 99.5 7.1E-13 1.5E-17 96.5 15.6 60 94-153 142-203 (219)
80 PF13238 AAA_18: AAA domain; P 99.5 2.6E-14 5.7E-19 95.3 7.4 108 12-122 1-119 (129)
81 PRK05541 adenylylsulfate kinas 99.5 9E-14 1.9E-18 98.0 9.8 149 6-164 4-168 (176)
82 PRK10078 ribose 1,5-bisphospho 99.5 5E-13 1.1E-17 95.0 13.6 143 10-167 3-175 (186)
83 cd01672 TMPK Thymidine monopho 99.5 2.5E-12 5.4E-17 91.9 16.5 157 10-167 1-199 (200)
84 PRK14737 gmk guanylate kinase; 99.5 2.8E-13 6.1E-18 96.1 11.4 152 8-167 3-183 (186)
85 PRK11860 bifunctional 3-phosph 99.5 8.6E-13 1.9E-17 110.0 16.0 159 8-168 441-655 (661)
86 PRK03333 coaE dephospho-CoA ki 99.5 3.8E-13 8.3E-18 105.7 13.0 151 10-169 2-193 (395)
87 PRK05480 uridine/cytidine kina 99.5 1E-12 2.2E-17 95.1 14.2 113 5-117 2-148 (209)
88 PRK05416 glmZ(sRNA)-inactivati 99.5 3.4E-13 7.4E-18 101.4 11.9 142 7-167 4-159 (288)
89 PLN02924 thymidylate kinase 99.5 1.6E-12 3.5E-17 94.5 14.6 156 7-169 14-204 (220)
90 PF01121 CoaE: Dephospho-CoA k 99.5 1.4E-13 3.1E-18 96.9 8.8 104 11-116 2-144 (180)
91 cd02021 GntK Gluconate kinase 99.5 7.8E-13 1.7E-17 90.7 12.2 103 11-116 1-119 (150)
92 PRK09518 bifunctional cytidyla 99.5 4.3E-13 9.3E-18 112.6 12.9 157 10-170 2-233 (712)
93 COG0194 Gmk Guanylate kinase [ 99.5 1.7E-12 3.8E-17 90.2 13.2 146 8-166 3-180 (191)
94 cd02022 DPCK Dephospho-coenzym 99.5 3E-13 6.4E-18 95.6 9.6 36 11-47 1-36 (179)
95 COG2019 AdkA Archaeal adenylat 99.5 4.1E-12 8.8E-17 86.6 13.9 106 9-114 4-129 (189)
96 PRK09825 idnK D-gluconate kina 99.5 2.3E-12 5E-17 90.7 13.2 152 8-167 2-167 (176)
97 PRK05537 bifunctional sulfate 99.5 3.8E-13 8.2E-18 109.8 10.5 155 6-168 389-562 (568)
98 PRK13974 thymidylate kinase; P 99.5 5.7E-12 1.2E-16 91.3 15.4 71 94-168 134-206 (212)
99 COG0529 CysC Adenylylsulfate k 99.5 1.1E-13 2.3E-18 95.1 5.9 105 5-114 19-140 (197)
100 PRK12269 bifunctional cytidyla 99.4 5E-12 1.1E-16 107.0 15.9 163 8-173 33-290 (863)
101 PRK11545 gntK gluconate kinase 99.4 2.9E-12 6.3E-17 89.2 11.5 142 15-169 1-161 (163)
102 PRK07933 thymidylate kinase; V 99.4 1.4E-11 3.1E-16 89.2 15.4 73 94-166 132-211 (213)
103 PRK03846 adenylylsulfate kinas 99.4 4.3E-12 9.3E-17 91.1 12.3 150 7-167 22-191 (198)
104 PRK13976 thymidylate kinase; P 99.4 4E-11 8.7E-16 86.6 17.0 156 10-169 1-202 (209)
105 cd01673 dNK Deoxyribonucleosid 99.4 4.3E-12 9.4E-17 90.6 11.9 28 11-38 1-28 (193)
106 PRK12338 hypothetical protein; 99.4 1.2E-11 2.5E-16 93.8 14.6 42 6-47 1-42 (319)
107 PRK14738 gmk guanylate kinase; 99.4 2.8E-12 6.2E-17 92.5 10.7 154 7-168 11-194 (206)
108 PF03668 ATP_bind_2: P-loop AT 99.4 1.2E-11 2.6E-16 91.8 14.1 139 9-167 1-155 (284)
109 PHA02530 pseT polynucleotide k 99.4 5.9E-12 1.3E-16 95.8 12.6 105 9-117 2-125 (300)
110 cd02024 NRK1 Nicotinamide ribo 99.4 1.9E-12 4.2E-17 91.6 8.7 107 11-117 1-153 (187)
111 KOG3220 Similar to bacterial d 99.4 5.3E-12 1.1E-16 88.4 10.6 154 9-170 1-196 (225)
112 COG4088 Predicted nucleotide k 99.4 3.4E-12 7.3E-17 89.9 9.3 123 9-140 1-140 (261)
113 PRK00300 gmk guanylate kinase; 99.4 8.1E-12 1.7E-16 90.0 11.5 158 5-169 1-185 (205)
114 TIGR02322 phosphon_PhnN phosph 99.4 2.3E-11 4.9E-16 85.9 13.4 146 10-167 2-177 (179)
115 PF07931 CPT: Chloramphenicol 99.4 7.5E-12 1.6E-16 87.5 10.1 149 10-166 2-173 (174)
116 PRK06547 hypothetical protein; 99.4 1.9E-11 4E-16 85.7 11.9 111 6-117 12-140 (172)
117 KOG3877 NADH:ubiquinone oxidor 99.4 1.7E-11 3.6E-16 89.9 11.7 115 7-121 69-244 (393)
118 TIGR03574 selen_PSTK L-seryl-t 99.4 1.7E-11 3.7E-16 91.0 11.9 102 11-117 1-118 (249)
119 PRK00889 adenylylsulfate kinas 99.3 2.5E-11 5.3E-16 85.4 11.7 152 7-167 2-169 (175)
120 KOG3327 Thymidylate kinase/ade 99.3 5.2E-11 1.1E-15 82.4 12.5 159 6-171 2-198 (208)
121 COG0572 Udk Uridine kinase [Nu 99.3 1.5E-11 3.2E-16 88.0 10.1 111 7-117 6-150 (218)
122 PTZ00301 uridine kinase; Provi 99.3 5.8E-11 1.3E-15 85.7 13.3 110 8-117 2-149 (210)
123 PF02223 Thymidylate_kin: Thym 99.3 3.4E-12 7.4E-17 90.7 6.8 67 94-162 118-186 (186)
124 TIGR03263 guanyl_kin guanylate 99.3 2.3E-11 5E-16 85.9 9.6 37 9-45 1-37 (180)
125 PF01583 APS_kinase: Adenylyls 99.3 8.6E-12 1.9E-16 85.4 7.1 102 8-113 1-118 (156)
126 COG0645 Predicted kinase [Gene 99.3 4E-11 8.7E-16 82.1 10.0 107 10-117 2-126 (170)
127 PRK06696 uridine kinase; Valid 99.3 1.3E-10 2.8E-15 84.9 12.9 39 7-45 20-63 (223)
128 TIGR01663 PNK-3'Pase polynucle 99.3 4.7E-11 1E-15 96.4 11.4 114 7-139 367-491 (526)
129 TIGR00455 apsK adenylylsulfate 99.3 2.3E-11 5.1E-16 86.2 8.6 102 7-111 16-132 (184)
130 PRK12339 2-phosphoglycerate ki 99.3 1.4E-10 3E-15 83.0 12.5 40 8-47 2-41 (197)
131 COG1660 Predicted P-loop-conta 99.3 2.2E-10 4.7E-15 83.4 13.0 139 9-167 1-156 (286)
132 PHA00729 NTP-binding motif con 99.2 1.1E-11 2.4E-16 89.6 5.5 109 9-125 17-149 (226)
133 cd02023 UMPK Uridine monophosp 99.2 5.9E-10 1.3E-14 80.0 13.9 35 11-45 1-38 (198)
134 TIGR00235 udk uridine kinase. 99.2 3.8E-10 8.3E-15 81.5 12.7 110 7-117 4-148 (207)
135 PF08433 KTI12: Chromatin asso 99.2 1.5E-10 3.3E-15 86.5 10.7 105 9-117 1-121 (270)
136 smart00072 GuKc Guanylate kina 99.2 3.2E-10 7E-15 80.4 11.3 25 9-33 2-26 (184)
137 PRK05506 bifunctional sulfate 99.2 1.4E-10 3.1E-15 96.5 9.4 151 8-167 459-627 (632)
138 PRK07667 uridine kinase; Provi 99.2 4.2E-10 9.1E-15 80.4 10.5 39 8-46 16-59 (193)
139 COG3709 Uncharacterized compon 99.2 1.1E-09 2.3E-14 74.5 11.5 149 8-164 4-178 (192)
140 PLN02348 phosphoribulokinase 99.1 8.2E-10 1.8E-14 85.7 11.5 109 7-117 47-205 (395)
141 PF00485 PRK: Phosphoribulokin 99.1 1.9E-10 4.1E-15 82.3 7.0 105 11-117 1-149 (194)
142 PF00625 Guanylate_kin: Guanyl 99.1 2.7E-10 5.8E-15 80.8 7.3 152 8-168 1-182 (183)
143 cd02027 APSK Adenosine 5'-phos 99.1 9.2E-10 2E-14 75.5 8.7 101 11-114 1-116 (149)
144 PRK05439 pantothenate kinase; 99.1 1.1E-09 2.3E-14 83.2 9.6 108 6-116 83-238 (311)
145 PRK07429 phosphoribulokinase; 99.1 2.3E-09 4.9E-14 82.3 11.2 39 6-44 5-46 (327)
146 KOG3078 Adenylate kinase [Nucl 99.1 6.5E-10 1.4E-14 80.4 7.0 103 8-115 14-138 (235)
147 cd02028 UMPK_like Uridine mono 99.0 2.2E-09 4.7E-14 75.9 9.5 37 11-47 1-42 (179)
148 TIGR00554 panK_bact pantothena 99.0 1.5E-09 3.3E-14 81.8 8.6 39 6-44 59-104 (290)
149 PRK09270 nucleoside triphospha 99.0 2.5E-09 5.4E-14 78.5 9.0 27 7-33 31-57 (229)
150 cd02025 PanK Pantothenate kina 99.0 1.9E-09 4.1E-14 78.6 8.2 34 11-44 1-41 (220)
151 TIGR03575 selen_PSTK_euk L-ser 99.0 2.1E-09 4.5E-14 82.6 8.8 106 11-116 1-123 (340)
152 PLN02772 guanylate kinase 99.0 8.5E-09 1.8E-13 80.1 10.2 151 8-166 134-316 (398)
153 COG4639 Predicted kinase [Gene 99.0 2E-08 4.2E-13 68.0 10.6 104 9-116 2-118 (168)
154 KOG0730 AAA+-type ATPase [Post 98.9 1.5E-09 3.3E-14 87.9 6.2 112 3-114 462-612 (693)
155 PF06414 Zeta_toxin: Zeta toxi 98.9 3.9E-09 8.5E-14 75.8 6.5 110 7-116 13-142 (199)
156 PRK04220 2-phosphoglycerate ki 98.9 5.6E-08 1.2E-12 73.4 12.6 37 7-43 90-127 (301)
157 PRK15453 phosphoribulokinase; 98.9 2.3E-08 5E-13 74.6 10.1 40 6-45 2-46 (290)
158 KOG0733 Nuclear AAA ATPase (VC 98.9 8.1E-09 1.7E-13 83.4 7.3 39 3-41 217-255 (802)
159 KOG0744 AAA+-type ATPase [Post 98.8 1.6E-08 3.4E-13 76.2 8.1 30 7-36 175-204 (423)
160 PHA03132 thymidine kinase; Pro 98.8 2.5E-08 5.4E-13 81.2 9.7 30 9-38 257-286 (580)
161 cd02026 PRK Phosphoribulokinas 98.8 2.8E-08 6.1E-13 74.7 9.3 34 11-44 1-37 (273)
162 COG1222 RPT1 ATP-dependent 26S 98.8 1.2E-08 2.6E-13 77.7 7.1 111 3-113 179-331 (406)
163 KOG0635 Adenosine 5'-phosphosu 98.8 2.4E-08 5.2E-13 67.3 7.0 101 7-112 29-146 (207)
164 KOG0731 AAA+-type ATPase conta 98.8 1.4E-08 3E-13 84.4 5.8 111 4-114 339-492 (774)
165 COG1072 CoaA Panthothenate kin 98.8 1.1E-07 2.5E-12 70.1 9.8 106 7-117 80-233 (283)
166 PF13189 Cytidylate_kin2: Cyti 98.7 7.3E-08 1.6E-12 68.1 8.1 105 11-116 1-135 (179)
167 PF01745 IPT: Isopentenyl tran 98.7 1.3E-07 2.7E-12 67.6 8.8 38 9-46 1-38 (233)
168 PF00004 AAA: ATPase family as 98.7 1.7E-08 3.7E-13 67.3 4.1 28 12-39 1-28 (132)
169 KOG0734 AAA+-type ATPase conta 98.7 1.1E-08 2.5E-13 81.5 3.1 34 7-40 335-368 (752)
170 PRK12337 2-phosphoglycerate ki 98.7 7.4E-07 1.6E-11 70.9 12.8 36 8-43 254-290 (475)
171 cd02029 PRK_like Phosphoribulo 98.7 2.1E-07 4.6E-12 69.0 9.2 35 11-45 1-40 (277)
172 cd02019 NK Nucleoside/nucleoti 98.7 3.8E-08 8.2E-13 58.5 4.1 23 11-33 1-23 (69)
173 PLN02318 phosphoribulokinase/u 98.6 1.8E-07 4E-12 76.2 9.0 37 8-44 64-101 (656)
174 PLN02165 adenylate isopentenyl 98.6 5.2E-08 1.1E-12 74.5 4.9 37 7-43 41-77 (334)
175 KOG3062 RNA polymerase II elon 98.6 6.9E-07 1.5E-11 64.1 9.9 109 9-118 1-125 (281)
176 PRK00091 miaA tRNA delta(2)-is 98.6 5.1E-08 1.1E-12 74.3 4.5 37 7-43 2-38 (307)
177 KOG0733 Nuclear AAA ATPase (VC 98.6 1.7E-07 3.8E-12 75.9 7.1 36 5-40 541-576 (802)
178 COG2074 2-phosphoglycerate kin 98.6 2.7E-06 6E-11 62.2 12.2 42 5-46 85-126 (299)
179 PRK09087 hypothetical protein; 98.6 4.1E-07 8.8E-12 66.6 8.0 106 9-114 44-163 (226)
180 TIGR01243 CDC48 AAA family ATP 98.5 6.7E-07 1.4E-11 76.0 9.1 36 5-40 483-518 (733)
181 PTZ00322 6-phosphofructo-2-kin 98.5 1.2E-06 2.6E-11 73.6 9.7 34 6-39 212-245 (664)
182 cd00071 GMPK Guanosine monopho 98.5 1.6E-07 3.5E-12 63.4 3.7 24 11-34 1-24 (137)
183 PF05496 RuvB_N: Holliday junc 98.5 1.9E-07 4.1E-12 67.5 4.0 31 8-38 49-79 (233)
184 PLN02840 tRNA dimethylallyltra 98.5 2E-07 4.3E-12 73.4 4.5 38 6-43 18-55 (421)
185 PRK06893 DNA replication initi 98.5 6.1E-07 1.3E-11 65.9 6.7 35 8-42 38-77 (229)
186 CHL00176 ftsH cell division pr 98.4 6.2E-07 1.3E-11 74.6 6.9 36 5-40 212-247 (638)
187 TIGR00390 hslU ATP-dependent p 98.4 2.7E-07 5.8E-12 72.5 4.4 35 8-42 46-80 (441)
188 PRK06761 hypothetical protein; 98.4 2.4E-07 5.3E-12 69.6 4.0 33 9-41 3-35 (282)
189 PF01591 6PF2K: 6-phosphofruct 98.4 4.2E-06 9.1E-11 60.9 10.3 41 8-48 11-56 (222)
190 KOG0736 Peroxisome assembly fa 98.4 6.9E-07 1.5E-11 74.2 6.6 37 4-40 700-736 (953)
191 CHL00195 ycf46 Ycf46; Provisio 98.4 3.1E-07 6.8E-12 74.1 4.6 37 4-40 254-290 (489)
192 PRK09169 hypothetical protein; 98.4 2.5E-06 5.3E-11 77.6 10.1 134 9-151 2110-2264(2316)
193 PLN00020 ribulose bisphosphate 98.4 3.8E-07 8.3E-12 70.5 4.4 39 5-43 144-184 (413)
194 TIGR03689 pup_AAA proteasome A 98.4 1.3E-06 2.9E-11 70.7 7.5 33 4-36 211-243 (512)
195 KOG0707 Guanylate kinase [Nucl 98.4 7.4E-06 1.6E-10 59.1 10.1 45 6-50 34-79 (231)
196 smart00382 AAA ATPases associa 98.4 4.5E-07 9.7E-12 60.4 3.7 28 9-36 2-29 (148)
197 KOG3308 Uncharacterized protei 98.4 2.2E-06 4.7E-11 60.6 7.1 39 7-45 2-41 (225)
198 PRK03992 proteasome-activating 98.4 3.9E-07 8.4E-12 71.9 3.8 36 4-39 160-195 (389)
199 KOG4235 Mitochondrial thymidin 98.3 1.2E-05 2.7E-10 56.6 10.6 43 95-137 154-196 (244)
200 COG3911 Predicted ATPase [Gene 98.3 5.8E-07 1.3E-11 60.5 3.9 37 1-38 1-37 (183)
201 PRK06620 hypothetical protein; 98.3 1.6E-06 3.4E-11 63.0 6.5 30 10-39 45-74 (214)
202 PHA02575 1 deoxynucleoside mon 98.3 7.8E-07 1.7E-11 64.3 4.7 37 10-47 1-38 (227)
203 PF13521 AAA_28: AAA domain; P 98.3 4.1E-07 8.9E-12 63.2 3.2 33 11-46 1-33 (163)
204 smart00763 AAA_PrkA PrkA AAA d 98.3 5.5E-07 1.2E-11 69.6 4.1 28 8-35 77-104 (361)
205 COG1618 Predicted nucleotide k 98.3 5.7E-07 1.2E-11 61.4 3.7 26 8-33 4-29 (179)
206 PLN02748 tRNA dimethylallyltra 98.3 7E-07 1.5E-11 71.5 4.7 36 7-42 20-55 (468)
207 PRK05201 hslU ATP-dependent pr 98.3 5.6E-07 1.2E-11 70.8 4.0 34 9-42 50-83 (443)
208 PTZ00454 26S protease regulato 98.3 7.7E-07 1.7E-11 70.3 4.6 37 4-40 174-210 (398)
209 COG3896 Chloramphenicol 3-O-ph 98.3 5E-05 1.1E-09 51.9 12.5 155 4-166 18-203 (205)
210 PF07728 AAA_5: AAA domain (dy 98.3 7.2E-07 1.6E-11 60.2 3.8 27 12-38 2-28 (139)
211 PRK08084 DNA replication initi 98.3 1.8E-06 4E-11 63.6 6.2 36 8-43 44-84 (235)
212 KOG1384 tRNA delta(2)-isopente 98.3 1.3E-05 2.8E-10 60.7 10.6 36 8-43 6-41 (348)
213 TIGR00174 miaA tRNA isopenteny 98.3 7.4E-07 1.6E-11 67.2 4.0 33 11-43 1-33 (287)
214 TIGR00150 HI0065_YjeE ATPase, 98.3 1.1E-06 2.5E-11 58.7 4.3 30 7-36 20-49 (133)
215 KOG0738 AAA+-type ATPase [Post 98.3 6.4E-06 1.4E-10 63.8 8.8 36 7-42 243-278 (491)
216 COG0465 HflB ATP-dependent Zn 98.3 1.4E-06 3E-11 71.3 5.1 35 6-40 180-214 (596)
217 TIGR01241 FtsH_fam ATP-depende 98.3 1.1E-06 2.3E-11 71.6 4.4 36 5-40 84-119 (495)
218 TIGR01242 26Sp45 26S proteasom 98.3 1.4E-06 3E-11 68.2 4.8 36 5-40 152-187 (364)
219 PRK05800 cobU adenosylcobinami 98.2 1.4E-06 3E-11 61.1 4.0 27 10-36 2-28 (170)
220 KOG0735 AAA+-type ATPase [Post 98.2 6.6E-06 1.4E-10 68.1 8.4 38 3-40 695-732 (952)
221 KOG0739 AAA+-type ATPase [Post 98.2 5.6E-06 1.2E-10 62.2 7.4 39 8-46 165-205 (439)
222 PF13173 AAA_14: AAA domain 98.2 1.9E-06 4.1E-11 57.5 4.3 36 9-44 2-41 (128)
223 COG0324 MiaA tRNA delta(2)-iso 98.2 2E-06 4.3E-11 65.1 4.7 36 8-43 2-37 (308)
224 TIGR01650 PD_CobS cobaltochela 98.2 1.3E-06 2.8E-11 66.8 3.7 31 8-38 63-93 (327)
225 PTZ00361 26 proteosome regulat 98.2 1.9E-06 4.1E-11 68.7 4.7 36 4-39 212-247 (438)
226 COG2256 MGS1 ATPase related to 98.2 1.5E-06 3.3E-11 67.3 4.0 35 8-42 47-81 (436)
227 PRK05642 DNA replication initi 98.2 6.6E-06 1.4E-10 60.6 7.3 36 10-45 46-86 (234)
228 PHA03136 thymidine kinase; Pro 98.2 7.4E-06 1.6E-10 63.5 7.7 27 94-120 191-217 (378)
229 cd00009 AAA The AAA+ (ATPases 98.2 2.2E-06 4.8E-11 57.5 4.3 26 8-33 18-43 (151)
230 TIGR02640 gas_vesic_GvpN gas v 98.2 2E-06 4.4E-11 64.4 4.2 31 8-38 20-50 (262)
231 PF03215 Rad17: Rad17 cell cyc 98.2 2.4E-06 5.3E-11 69.5 4.7 31 8-38 44-74 (519)
232 PRK05342 clpX ATP-dependent pr 98.2 2.1E-06 4.6E-11 68.1 4.1 33 9-41 108-140 (412)
233 KOG0737 AAA+-type ATPase [Post 98.2 1.6E-06 3.4E-11 66.5 3.2 35 6-40 124-158 (386)
234 PRK14729 miaA tRNA delta(2)-is 98.2 3.3E-06 7E-11 64.1 4.8 37 6-43 1-37 (300)
235 PF08303 tRNA_lig_kinase: tRNA 98.2 6.1E-05 1.3E-09 51.9 10.5 34 12-45 2-36 (168)
236 TIGR02881 spore_V_K stage V sp 98.2 2.3E-06 4.9E-11 64.0 4.0 26 8-33 41-66 (261)
237 PRK11784 tRNA 2-selenouridine 98.1 1.7E-05 3.7E-10 61.5 8.6 109 7-117 139-257 (345)
238 KOG2702 Predicted panthothenat 98.1 1E-05 2.2E-10 58.6 6.8 27 8-34 118-144 (323)
239 CHL00206 ycf2 Ycf2; Provisiona 98.1 2.6E-06 5.6E-11 77.0 4.3 41 4-44 1625-1667(2281)
240 PRK10751 molybdopterin-guanine 98.1 3.1E-06 6.8E-11 59.2 3.8 27 7-33 4-30 (173)
241 PF03266 NTPase_1: NTPase; In 98.1 2.9E-06 6.2E-11 59.3 3.5 23 11-33 1-23 (168)
242 PF13245 AAA_19: Part of AAA d 98.1 4.1E-06 8.9E-11 50.6 3.6 25 8-32 9-33 (76)
243 COG1223 Predicted ATPase (AAA+ 98.1 3E-06 6.5E-11 62.5 3.5 33 8-40 150-182 (368)
244 TIGR00382 clpX endopeptidase C 98.1 3.9E-06 8.4E-11 66.4 4.4 32 9-40 116-147 (413)
245 KOG4238 Bifunctional ATP sulfu 98.1 3.3E-06 7.2E-11 64.8 3.8 105 8-116 49-171 (627)
246 COG0464 SpoVK ATPases of the A 98.1 4.2E-06 9.2E-11 68.1 4.7 37 5-41 272-308 (494)
247 KOG0743 AAA+-type ATPase [Post 98.1 2.6E-06 5.6E-11 67.0 3.3 32 9-40 235-266 (457)
248 PRK08099 bifunctional DNA-bind 98.1 3.8E-06 8.3E-11 66.4 4.2 31 8-38 218-248 (399)
249 TIGR00635 ruvB Holliday juncti 98.1 4.4E-06 9.6E-11 63.8 4.4 30 8-37 29-58 (305)
250 PF00910 RNA_helicase: RNA hel 98.1 2.7E-06 5.9E-11 55.0 2.8 22 12-33 1-22 (107)
251 PF05729 NACHT: NACHT domain 98.1 3.7E-06 8E-11 58.0 3.5 24 10-33 1-24 (166)
252 cd00820 PEPCK_HprK Phosphoenol 98.1 5E-06 1.1E-10 53.4 3.7 36 7-44 13-48 (107)
253 PHA02244 ATPase-like protein 98.1 4E-06 8.6E-11 65.1 3.8 36 8-43 118-153 (383)
254 PRK00080 ruvB Holliday junctio 98.1 4.9E-06 1.1E-10 64.3 4.3 31 8-38 50-80 (328)
255 PRK04195 replication factor C 98.1 4.8E-06 1E-10 67.6 4.3 32 9-40 39-70 (482)
256 PF01712 dNK: Deoxynucleoside 98.1 1.3E-06 2.8E-11 59.7 0.9 72 95-166 68-142 (146)
257 PF07726 AAA_3: ATPase family 98.1 2.4E-06 5.1E-11 56.5 2.0 28 12-39 2-29 (131)
258 PRK10733 hflB ATP-dependent me 98.1 2.3E-05 5E-10 65.8 8.3 33 8-40 184-216 (644)
259 COG4619 ABC-type uncharacteriz 98.0 4.7E-06 1E-10 57.6 3.4 25 7-31 27-51 (223)
260 PF02367 UPF0079: Uncharacteri 98.0 4.5E-06 9.8E-11 55.1 3.2 30 7-36 13-42 (123)
261 PLN02796 D-glycerate 3-kinase 98.0 5.6E-06 1.2E-10 63.8 4.1 37 8-44 99-140 (347)
262 PRK08903 DnaA regulatory inact 98.0 9E-06 1.9E-10 59.5 5.0 38 8-45 41-83 (227)
263 TIGR03420 DnaA_homol_Hda DnaA 98.0 7.1E-06 1.5E-10 59.8 4.4 39 7-45 36-79 (226)
264 COG1126 GlnQ ABC-type polar am 98.0 4.7E-06 1E-10 59.8 3.3 25 6-30 25-49 (240)
265 PRK13342 recombination factor 98.0 6.4E-06 1.4E-10 65.6 4.4 33 8-40 35-67 (413)
266 CHL00181 cbbX CbbX; Provisiona 98.0 6.1E-06 1.3E-10 62.6 4.0 26 8-33 58-83 (287)
267 PF07724 AAA_2: AAA domain (Cd 98.0 6.7E-06 1.5E-10 57.6 3.9 38 8-45 2-45 (171)
268 TIGR01243 CDC48 AAA family ATP 98.0 6.6E-06 1.4E-10 70.0 4.5 36 5-40 208-243 (733)
269 PF01695 IstB_IS21: IstB-like 98.0 9.8E-06 2.1E-10 57.2 4.7 42 7-48 45-91 (178)
270 COG0466 Lon ATP-dependent Lon 98.0 5.6E-06 1.2E-10 68.5 3.8 33 7-39 348-380 (782)
271 PF10662 PduV-EutP: Ethanolami 98.0 6.1E-06 1.3E-10 55.8 3.2 24 9-32 1-24 (143)
272 TIGR01526 nadR_NMN_Atrans nico 98.0 7.7E-06 1.7E-10 63.1 4.2 31 9-39 162-192 (325)
273 PRK08727 hypothetical protein; 98.0 1.2E-05 2.5E-10 59.2 4.8 35 10-44 42-81 (233)
274 KOG1969 DNA replication checkp 98.0 7.7E-06 1.7E-10 67.8 4.1 34 7-40 324-357 (877)
275 KOG1532 GTPase XAB1, interacts 98.0 5.3E-05 1.2E-09 56.3 8.0 43 6-48 16-63 (366)
276 TIGR02880 cbbX_cfxQ probable R 98.0 1E-05 2.2E-10 61.3 4.5 25 9-33 58-82 (284)
277 PF13401 AAA_22: AAA domain; P 98.0 5.8E-06 1.3E-10 55.0 2.9 26 8-33 3-28 (131)
278 cd01918 HprK_C HprK/P, the bif 98.0 1E-05 2.2E-10 55.2 3.9 33 8-42 13-45 (149)
279 PHA03135 thymidine kinase; Pro 98.0 0.00036 7.9E-09 53.6 12.6 29 4-32 5-33 (343)
280 KOG1970 Checkpoint RAD17-RFC c 98.0 8.2E-06 1.8E-10 65.7 3.7 32 8-39 109-140 (634)
281 PF06068 TIP49: TIP49 C-termin 98.0 6E-06 1.3E-10 63.8 2.9 37 7-43 48-88 (398)
282 PRK07003 DNA polymerase III su 97.9 3E-05 6.5E-10 65.2 7.1 27 9-35 38-64 (830)
283 PRK06526 transposase; Provisio 97.9 9.2E-06 2E-10 60.5 3.6 39 8-46 97-140 (254)
284 COG1136 SalX ABC-type antimicr 97.9 9.8E-06 2.1E-10 58.9 3.5 26 6-31 28-53 (226)
285 PF06309 Torsin: Torsin; Inte 97.9 1.2E-05 2.6E-10 53.0 3.6 28 6-33 50-77 (127)
286 PF03029 ATP_bind_1: Conserved 97.9 7.3E-06 1.6E-10 60.5 2.8 30 14-43 1-35 (238)
287 PRK12377 putative replication 97.9 2.1E-05 4.5E-10 58.3 5.2 38 9-46 101-143 (248)
288 TIGR02639 ClpA ATP-dependent C 97.9 0.00045 9.8E-09 59.0 13.8 35 11-45 486-522 (731)
289 PRK08181 transposase; Validate 97.9 1.8E-05 4E-10 59.3 4.8 40 8-47 105-149 (269)
290 PF13555 AAA_29: P-loop contai 97.9 1.6E-05 3.5E-10 45.8 3.5 22 10-31 24-45 (62)
291 COG1116 TauB ABC-type nitrate/ 97.9 1.1E-05 2.4E-10 59.0 3.5 27 6-32 26-52 (248)
292 PLN03046 D-glycerate 3-kinase; 97.9 1.3E-05 2.8E-10 63.2 3.9 37 8-44 211-252 (460)
293 COG2255 RuvB Holliday junction 97.9 1.1E-05 2.5E-10 60.1 3.4 29 9-37 52-80 (332)
294 PF03308 ArgK: ArgK protein; 97.9 9.1E-06 2E-10 59.9 2.9 26 8-33 28-53 (266)
295 PRK12402 replication factor C 97.9 2E-05 4.3E-10 60.9 4.9 25 9-33 36-60 (337)
296 PF13191 AAA_16: AAA ATPase do 97.9 9.5E-06 2.1E-10 57.1 2.9 27 7-33 22-48 (185)
297 cd01131 PilT Pilus retraction 97.9 1.2E-05 2.6E-10 57.7 3.4 25 10-34 2-26 (198)
298 PRK09435 membrane ATPase/prote 97.9 1.4E-05 3.1E-10 61.6 4.0 27 7-33 54-80 (332)
299 TIGR03015 pepcterm_ATPase puta 97.9 1.5E-05 3.2E-10 59.7 4.0 26 9-34 43-68 (269)
300 PRK10646 ADP-binding protein; 97.9 2E-05 4.4E-10 53.9 4.2 29 7-35 26-54 (153)
301 KOG0727 26S proteasome regulat 97.9 1.4E-05 2.9E-10 58.9 3.5 44 3-46 183-228 (408)
302 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00089 1.9E-08 58.1 15.0 36 11-46 598-638 (852)
303 PRK09183 transposase/IS protei 97.9 2.1E-05 4.5E-10 58.8 4.6 38 7-44 100-142 (259)
304 COG3839 MalK ABC-type sugar tr 97.9 1.3E-05 2.8E-10 61.7 3.5 26 6-31 26-51 (338)
305 PF00308 Bac_DnaA: Bacterial d 97.9 6.5E-05 1.4E-09 54.8 7.0 38 9-46 34-78 (219)
306 PLN03025 replication factor C 97.9 1.5E-05 3.3E-10 61.4 3.8 26 8-33 33-58 (319)
307 COG0542 clpA ATP-binding subun 97.9 0.00026 5.6E-09 59.9 11.2 38 10-47 522-564 (786)
308 KOG0729 26S proteasome regulat 97.9 1.8E-05 3.9E-10 58.7 4.0 37 4-40 206-242 (435)
309 KOG2004 Mitochondrial ATP-depe 97.9 1.4E-05 3.1E-10 66.2 3.8 33 7-39 436-468 (906)
310 PHA02624 large T antigen; Prov 97.9 2.3E-05 5E-10 64.3 4.9 36 5-40 427-462 (647)
311 TIGR00763 lon ATP-dependent pr 97.9 1.6E-05 3.5E-10 68.1 4.2 32 8-39 346-377 (775)
312 COG2884 FtsE Predicted ATPase 97.9 1.7E-05 3.7E-10 55.9 3.5 28 6-33 25-52 (223)
313 cd03115 SRP The signal recogni 97.8 2.1E-05 4.5E-10 55.1 4.0 32 11-42 2-38 (173)
314 TIGR03709 PPK2_rel_1 polyphosp 97.8 0.00096 2.1E-08 49.8 12.6 27 8-34 55-81 (264)
315 CHL00095 clpC Clp protease ATP 97.8 0.001 2.2E-08 57.6 14.6 33 11-43 541-578 (821)
316 cd01130 VirB11-like_ATPase Typ 97.8 1.8E-05 3.9E-10 56.2 3.4 27 7-33 23-49 (186)
317 PRK14962 DNA polymerase III su 97.8 1.7E-05 3.8E-10 64.0 3.7 26 10-35 37-62 (472)
318 COG0802 Predicted ATPase or ki 97.8 2.7E-05 5.8E-10 52.7 4.0 29 7-35 23-51 (149)
319 TIGR02237 recomb_radB DNA repa 97.8 2.5E-05 5.3E-10 56.4 4.1 38 5-42 8-50 (209)
320 TIGR03707 PPK2_P_aer polyphosp 97.8 0.00076 1.6E-08 49.4 11.8 28 8-35 30-57 (230)
321 COG1703 ArgK Putative periplas 97.8 1.9E-05 4.1E-10 59.3 3.4 27 7-33 49-75 (323)
322 KOG0651 26S proteasome regulat 97.8 3E-05 6.4E-10 58.6 4.4 34 5-38 162-195 (388)
323 COG1124 DppF ABC-type dipeptid 97.8 2E-05 4.4E-10 57.4 3.4 26 7-32 31-56 (252)
324 COG1219 ClpX ATP-dependent pro 97.8 2.4E-05 5.1E-10 59.3 3.8 34 9-42 97-130 (408)
325 COG4185 Uncharacterized protei 97.8 0.00028 6.1E-09 48.4 8.6 44 9-52 2-47 (187)
326 TIGR02639 ClpA ATP-dependent C 97.8 0.00039 8.4E-09 59.4 11.5 26 8-33 202-227 (731)
327 PF03205 MobB: Molybdopterin g 97.8 2E-05 4.4E-10 53.4 3.1 24 10-33 1-24 (140)
328 KOG0991 Replication factor C, 97.8 2.2E-05 4.7E-10 57.2 3.3 27 7-33 46-72 (333)
329 PRK14961 DNA polymerase III su 97.8 2.2E-05 4.8E-10 61.5 3.6 26 10-35 39-64 (363)
330 COG1117 PstB ABC-type phosphat 97.8 2.4E-05 5.2E-10 56.2 3.4 29 4-33 28-56 (253)
331 TIGR01223 Pmev_kin_anim phosph 97.8 0.0007 1.5E-08 47.3 10.4 148 11-170 1-179 (182)
332 COG1855 ATPase (PilT family) [ 97.8 1.9E-05 4.2E-10 62.3 3.1 26 8-33 262-287 (604)
333 cd00544 CobU Adenosylcobinamid 97.8 3.1E-05 6.7E-10 54.2 3.8 26 11-36 1-26 (169)
334 PRK13341 recombination factor 97.8 3E-05 6.6E-10 65.6 4.4 34 8-41 51-84 (725)
335 PHA02544 44 clamp loader, smal 97.8 2.6E-05 5.7E-10 59.8 3.7 29 9-37 43-71 (316)
336 TIGR03708 poly_P_AMP_trns poly 97.8 0.00092 2E-08 54.2 12.4 33 7-39 38-73 (493)
337 cd01120 RecA-like_NTPases RecA 97.8 2.4E-05 5.2E-10 53.6 3.1 23 11-33 1-23 (165)
338 COG1224 TIP49 DNA helicase TIP 97.8 2.6E-05 5.6E-10 59.9 3.4 34 5-38 61-96 (450)
339 PRK15455 PrkA family serine pr 97.8 2.4E-05 5.1E-10 64.0 3.4 27 7-33 101-127 (644)
340 PF00448 SRP54: SRP54-type pro 97.7 2.2E-05 4.8E-10 56.2 2.9 25 9-33 1-25 (196)
341 PRK14956 DNA polymerase III su 97.7 2.8E-05 6.2E-10 62.5 3.7 26 10-35 41-66 (484)
342 COG4240 Predicted kinase [Gene 97.7 4.4E-05 9.5E-10 55.3 4.2 38 7-44 48-91 (300)
343 PRK08116 hypothetical protein; 97.7 5.5E-05 1.2E-09 56.9 5.0 38 9-46 114-156 (268)
344 cd03116 MobB Molybdenum is an 97.7 3.3E-05 7.1E-10 53.5 3.5 25 9-33 1-25 (159)
345 PRK13695 putative NTPase; Prov 97.7 3.3E-05 7.1E-10 54.2 3.5 24 10-33 1-24 (174)
346 COG3842 PotA ABC-type spermidi 97.7 2.9E-05 6.4E-10 60.1 3.5 26 6-31 28-53 (352)
347 TIGR00101 ureG urease accessor 97.7 3.3E-05 7.2E-10 55.5 3.6 25 9-33 1-25 (199)
348 TIGR01166 cbiO cobalt transpor 97.7 3.2E-05 6.9E-10 55.0 3.5 28 6-33 15-42 (190)
349 TIGR00960 3a0501s02 Type II (G 97.7 3.1E-05 6.6E-10 56.2 3.5 27 7-33 27-53 (216)
350 PRK06835 DNA replication prote 97.7 5.3E-05 1.1E-09 58.5 4.8 39 9-47 183-226 (329)
351 PRK08939 primosomal protein Dn 97.7 6.5E-05 1.4E-09 57.5 5.3 40 8-47 155-199 (306)
352 TIGR01618 phage_P_loop phage n 97.7 3.3E-05 7.2E-10 56.2 3.5 33 8-42 11-43 (220)
353 PF00005 ABC_tran: ABC transpo 97.7 2E-05 4.3E-10 52.9 2.2 28 6-33 8-35 (137)
354 PRK06645 DNA polymerase III su 97.7 3.3E-05 7.1E-10 62.9 3.8 28 9-36 43-70 (507)
355 cd03292 ABC_FtsE_transporter F 97.7 3.3E-05 7.2E-10 55.9 3.5 28 6-33 24-51 (214)
356 cd03269 ABC_putative_ATPase Th 97.7 3.4E-05 7.5E-10 55.7 3.5 28 6-33 23-50 (210)
357 cd01124 KaiC KaiC is a circadi 97.7 3.8E-05 8.3E-10 54.2 3.7 31 11-41 1-36 (187)
358 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 3.4E-05 7.4E-10 56.0 3.5 28 6-33 27-54 (218)
359 PRK13768 GTPase; Provisional 97.7 4.1E-05 8.8E-10 57.1 3.9 34 9-42 2-40 (253)
360 PRK14086 dnaA chromosomal repl 97.7 7.5E-05 1.6E-09 61.7 5.7 105 10-114 315-456 (617)
361 PRK07952 DNA replication prote 97.7 6.4E-05 1.4E-09 55.6 4.9 37 10-46 100-141 (244)
362 cd03238 ABC_UvrA The excision 97.7 3.8E-05 8.2E-10 54.1 3.4 26 6-31 18-43 (176)
363 PRK11331 5-methylcytosine-spec 97.7 3.5E-05 7.5E-10 61.4 3.6 27 8-34 193-219 (459)
364 COG0714 MoxR-like ATPases [Gen 97.7 3.9E-05 8.6E-10 59.3 3.9 31 8-38 42-72 (329)
365 PF03976 PPK2: Polyphosphate k 97.7 0.00051 1.1E-08 50.3 9.3 32 9-40 31-65 (228)
366 cd03225 ABC_cobalt_CbiO_domain 97.7 3.7E-05 8.1E-10 55.5 3.4 28 6-33 24-51 (211)
367 PRK10416 signal recognition pa 97.7 3.9E-05 8.5E-10 59.0 3.7 27 7-33 112-138 (318)
368 COG1484 DnaC DNA replication p 97.7 6.5E-05 1.4E-09 56.0 4.7 40 8-47 104-148 (254)
369 cd03263 ABC_subfamily_A The AB 97.7 3.9E-05 8.5E-10 55.8 3.5 28 6-33 25-52 (220)
370 cd03283 ABC_MutS-like MutS-lik 97.7 4.1E-05 8.9E-10 55.0 3.5 25 7-31 23-47 (199)
371 PHA03134 thymidine kinase; Pro 97.7 0.00083 1.8E-08 51.6 10.6 27 96-122 165-191 (340)
372 TIGR02673 FtsE cell division A 97.7 4.1E-05 8.8E-10 55.5 3.5 27 7-33 26-52 (214)
373 cd03261 ABC_Org_Solvent_Resist 97.7 4E-05 8.6E-10 56.4 3.5 28 6-33 23-50 (235)
374 TIGR02315 ABC_phnC phosphonate 97.7 4.1E-05 8.8E-10 56.6 3.5 28 6-33 25-52 (243)
375 cd03226 ABC_cobalt_CbiO_domain 97.7 4E-05 8.6E-10 55.2 3.4 28 6-33 23-50 (205)
376 cd03262 ABC_HisP_GlnQ_permease 97.7 4.2E-05 9.2E-10 55.3 3.5 28 6-33 23-50 (213)
377 cd01394 radB RadB. The archaea 97.7 4.8E-05 1E-09 55.3 3.8 37 5-41 15-56 (218)
378 cd03260 ABC_PstB_phosphate_tra 97.7 4.2E-05 9E-10 56.0 3.5 28 6-33 23-50 (227)
379 TIGR02211 LolD_lipo_ex lipopro 97.7 4.1E-05 8.9E-10 55.7 3.5 28 6-33 28-55 (221)
380 TIGR00064 ftsY signal recognit 97.7 4.3E-05 9.4E-10 57.5 3.6 35 7-41 70-109 (272)
381 PRK14974 cell division protein 97.7 4.3E-05 9.2E-10 59.1 3.7 26 8-33 139-164 (336)
382 PRK10787 DNA-binding ATP-depen 97.7 5.3E-05 1.1E-09 64.8 4.5 33 7-39 347-379 (784)
383 cd03259 ABC_Carb_Solutes_like 97.7 4.3E-05 9.3E-10 55.3 3.5 28 6-33 23-50 (213)
384 PRK09361 radB DNA repair and r 97.7 6.2E-05 1.3E-09 55.0 4.4 37 5-41 19-60 (225)
385 cd03224 ABC_TM1139_LivF_branch 97.7 3.8E-05 8.2E-10 55.9 3.2 28 6-33 23-50 (222)
386 cd03235 ABC_Metallic_Cations A 97.7 3.9E-05 8.4E-10 55.6 3.2 28 6-33 22-49 (213)
387 PRK07764 DNA polymerase III su 97.7 0.00011 2.4E-09 63.1 6.3 26 10-35 38-63 (824)
388 cd03264 ABC_drug_resistance_li 97.7 4.1E-05 8.9E-10 55.3 3.2 26 7-33 24-49 (211)
389 cd03230 ABC_DR_subfamily_A Thi 97.7 4.7E-05 1E-09 53.4 3.4 27 7-33 24-50 (173)
390 cd03256 ABC_PhnC_transporter A 97.7 4.6E-05 9.9E-10 56.2 3.5 28 6-33 24-51 (241)
391 PRK11034 clpA ATP-dependent Cl 97.7 5E-05 1.1E-09 64.6 4.1 34 10-43 489-524 (758)
392 PRK11629 lolD lipoprotein tran 97.7 4.5E-05 9.7E-10 56.1 3.5 28 6-33 32-59 (233)
393 cd03219 ABC_Mj1267_LivG_branch 97.7 4.1E-05 8.9E-10 56.3 3.3 28 6-33 23-50 (236)
394 cd03258 ABC_MetN_methionine_tr 97.7 4.7E-05 1E-09 55.9 3.5 28 6-33 28-55 (233)
395 PRK15177 Vi polysaccharide exp 97.7 4.7E-05 1E-09 55.3 3.5 28 6-33 10-37 (213)
396 PRK13851 type IV secretion sys 97.7 4.3E-05 9.4E-10 59.3 3.5 27 7-33 160-186 (344)
397 TIGR02782 TrbB_P P-type conjug 97.7 5.3E-05 1.1E-09 57.8 3.8 26 8-33 131-156 (299)
398 TIGR03608 L_ocin_972_ABC putat 97.7 4.6E-05 9.9E-10 54.8 3.4 28 6-33 21-48 (206)
399 KOG0726 26S proteasome regulat 97.7 3.4E-05 7.5E-10 57.9 2.7 38 3-40 213-250 (440)
400 cd03223 ABCD_peroxisomal_ALDP 97.7 5.3E-05 1.1E-09 52.8 3.5 28 6-33 24-51 (166)
401 cd03301 ABC_MalK_N The N-termi 97.7 4.9E-05 1.1E-09 55.0 3.5 28 6-33 23-50 (213)
402 cd03222 ABC_RNaseL_inhibitor T 97.7 5E-05 1.1E-09 53.5 3.4 27 7-33 23-49 (177)
403 cd03293 ABC_NrtD_SsuB_transpor 97.6 4.3E-05 9.4E-10 55.6 3.2 27 7-33 28-54 (220)
404 cd01128 rho_factor Transcripti 97.6 5.6E-05 1.2E-09 56.1 3.8 30 5-34 12-41 (249)
405 PRK13541 cytochrome c biogenes 97.6 5.1E-05 1.1E-09 54.2 3.5 28 6-33 23-50 (195)
406 TIGR03499 FlhF flagellar biosy 97.6 5.4E-05 1.2E-09 57.3 3.8 27 7-33 192-218 (282)
407 TIGR03410 urea_trans_UrtE urea 97.6 4.9E-05 1.1E-09 55.7 3.4 28 6-33 23-50 (230)
408 COG2805 PilT Tfp pilus assembl 97.6 0.00023 5E-09 53.7 6.9 28 7-34 123-150 (353)
409 cd03229 ABC_Class3 This class 97.6 5.3E-05 1.2E-09 53.4 3.5 27 7-33 24-50 (178)
410 PRK12724 flagellar biosynthesi 97.6 5.5E-05 1.2E-09 59.9 3.9 26 8-33 222-247 (432)
411 TIGR00176 mobB molybdopterin-g 97.6 5E-05 1.1E-09 52.4 3.2 23 11-33 1-23 (155)
412 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 5.1E-05 1.1E-09 55.9 3.5 28 6-33 24-51 (236)
413 cd03296 ABC_CysA_sulfate_impor 97.6 5.1E-05 1.1E-09 55.9 3.5 28 6-33 25-52 (239)
414 PRK11124 artP arginine transpo 97.6 5.2E-05 1.1E-09 56.0 3.5 28 6-33 25-52 (242)
415 cd03247 ABCC_cytochrome_bd The 97.6 5.5E-05 1.2E-09 53.3 3.5 28 6-33 25-52 (178)
416 cd03265 ABC_DrrA DrrA is the A 97.6 5.4E-05 1.2E-09 55.1 3.6 27 7-33 24-50 (220)
417 TIGR03771 anch_rpt_ABC anchore 97.6 5.6E-05 1.2E-09 55.2 3.6 28 6-33 3-30 (223)
418 cd03232 ABC_PDR_domain2 The pl 97.6 4.7E-05 1E-09 54.3 3.2 25 7-31 31-55 (192)
419 PRK14722 flhF flagellar biosyn 97.6 5.9E-05 1.3E-09 59.0 3.9 28 6-33 134-161 (374)
420 PRK10247 putative ABC transpor 97.6 5.6E-05 1.2E-09 55.3 3.5 28 6-33 30-57 (225)
421 cd03257 ABC_NikE_OppD_transpor 97.6 5.3E-05 1.2E-09 55.3 3.4 28 6-33 28-55 (228)
422 TIGR00750 lao LAO/AO transport 97.6 5.9E-05 1.3E-09 57.6 3.8 27 7-33 32-58 (300)
423 PRK10584 putative ABC transpor 97.6 5.6E-05 1.2E-09 55.3 3.5 27 7-33 34-60 (228)
424 TIGR01978 sufC FeS assembly AT 97.6 5.4E-05 1.2E-09 55.9 3.5 27 6-32 23-49 (243)
425 PF01078 Mg_chelatase: Magnesi 97.6 5.4E-05 1.2E-09 54.3 3.3 25 9-33 22-46 (206)
426 cd03246 ABCC_Protease_Secretio 97.6 6.2E-05 1.3E-09 52.8 3.6 27 7-33 26-52 (173)
427 PF08477 Miro: Miro-like prote 97.6 5.9E-05 1.3E-09 49.2 3.3 23 11-33 1-23 (119)
428 PRK04296 thymidine kinase; Pro 97.6 4.7E-05 1E-09 54.3 3.0 25 9-33 2-26 (190)
429 PRK14490 putative bifunctional 97.6 5.9E-05 1.3E-09 59.3 3.8 28 7-34 3-30 (369)
430 COG1120 FepC ABC-type cobalami 97.6 6.4E-05 1.4E-09 55.8 3.7 35 6-40 25-63 (258)
431 PF13086 AAA_11: AAA domain; P 97.6 5.1E-05 1.1E-09 55.2 3.2 23 11-33 19-41 (236)
432 PRK13833 conjugal transfer pro 97.6 5E-05 1.1E-09 58.4 3.2 26 8-33 143-168 (323)
433 TIGR03167 tRNA_sel_U_synt tRNA 97.6 0.00044 9.6E-09 53.0 8.3 106 8-117 126-244 (311)
434 PRK11248 tauB taurine transpor 97.6 5.8E-05 1.3E-09 56.3 3.5 28 6-33 24-51 (255)
435 CHL00095 clpC Clp protease ATP 97.6 0.0017 3.6E-08 56.3 12.7 26 8-33 199-224 (821)
436 PRK14250 phosphate ABC transpo 97.6 6E-05 1.3E-09 55.7 3.5 27 7-33 27-53 (241)
437 cd03268 ABC_BcrA_bacitracin_re 97.6 6.1E-05 1.3E-09 54.3 3.4 28 6-33 23-50 (208)
438 cd03214 ABC_Iron-Siderophores_ 97.6 6.6E-05 1.4E-09 53.0 3.5 28 6-33 22-49 (180)
439 cd03218 ABC_YhbG The ABC trans 97.6 6.2E-05 1.3E-09 55.2 3.5 28 6-33 23-50 (232)
440 PF03193 DUF258: Protein of un 97.6 6.7E-05 1.5E-09 51.8 3.4 26 8-33 34-59 (161)
441 PRK13540 cytochrome c biogenes 97.6 6.5E-05 1.4E-09 53.9 3.5 28 6-33 24-51 (200)
442 cd03216 ABC_Carb_Monos_I This 97.6 6.5E-05 1.4E-09 52.2 3.4 28 6-33 23-50 (163)
443 KOG0732 AAA+-type ATPase conta 97.6 0.00018 3.9E-09 62.4 6.6 30 4-33 294-323 (1080)
444 cd03237 ABC_RNaseL_inhibitor_d 97.6 7.1E-05 1.5E-09 55.6 3.8 28 6-33 22-49 (246)
445 PRK14242 phosphate transporter 97.6 6E-05 1.3E-09 56.0 3.4 27 6-32 29-55 (253)
446 TIGR02770 nickel_nikD nickel i 97.6 6.2E-05 1.3E-09 55.2 3.4 28 6-33 9-36 (230)
447 TIGR02524 dot_icm_DotB Dot/Icm 97.6 6.9E-05 1.5E-09 58.5 3.9 26 8-33 133-158 (358)
448 PRK14957 DNA polymerase III su 97.6 6.2E-05 1.4E-09 61.7 3.7 26 10-35 39-64 (546)
449 cd03245 ABCC_bacteriocin_expor 97.6 6.5E-05 1.4E-09 54.6 3.5 28 6-33 27-54 (220)
450 PRK14247 phosphate ABC transpo 97.6 6.4E-05 1.4E-09 55.8 3.5 28 6-33 26-53 (250)
451 PRK10744 pstB phosphate transp 97.6 6.3E-05 1.4E-09 56.2 3.5 28 6-33 36-63 (260)
452 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 6.7E-05 1.4E-09 51.1 3.3 28 6-33 23-50 (144)
453 cd03254 ABCC_Glucan_exporter_l 97.6 6.7E-05 1.5E-09 54.9 3.5 28 6-33 26-53 (229)
454 PRK13764 ATPase; Provisional 97.6 6.5E-05 1.4E-09 62.1 3.8 28 7-34 255-282 (602)
455 PRK14949 DNA polymerase III su 97.6 6E-05 1.3E-09 64.6 3.6 27 10-36 39-65 (944)
456 PRK00411 cdc6 cell division co 97.6 9E-05 1.9E-09 58.6 4.5 26 8-33 54-79 (394)
457 cd03250 ABCC_MRP_domain1 Domai 97.6 7E-05 1.5E-09 53.9 3.5 28 6-33 28-55 (204)
458 cd03234 ABCG_White The White s 97.6 6.2E-05 1.3E-09 55.0 3.2 28 6-33 30-57 (226)
459 TIGR01184 ntrCD nitrate transp 97.6 6.9E-05 1.5E-09 55.0 3.5 28 6-33 8-35 (230)
460 KOG0652 26S proteasome regulat 97.6 4.8E-05 1E-09 56.4 2.6 37 3-39 199-235 (424)
461 PRK11264 putative amino-acid A 97.6 6.9E-05 1.5E-09 55.6 3.5 28 6-33 26-53 (250)
462 TIGR02323 CP_lyasePhnK phospho 97.6 6.4E-05 1.4E-09 55.9 3.4 28 6-33 26-53 (253)
463 PRK14963 DNA polymerase III su 97.6 6E-05 1.3E-09 61.4 3.4 26 10-35 37-62 (504)
464 cd03266 ABC_NatA_sodium_export 97.6 7.1E-05 1.5E-09 54.4 3.5 27 7-33 29-55 (218)
465 PRK14960 DNA polymerase III su 97.6 6.8E-05 1.5E-09 62.4 3.7 27 9-35 37-63 (702)
466 PRK14493 putative bifunctional 97.6 7.3E-05 1.6E-09 56.3 3.6 25 9-33 1-25 (274)
467 PRK10908 cell division protein 97.6 7.3E-05 1.6E-09 54.5 3.5 28 6-33 25-52 (222)
468 PRK13539 cytochrome c biogenes 97.6 7.4E-05 1.6E-09 53.9 3.5 28 6-33 25-52 (207)
469 cd03228 ABCC_MRP_Like The MRP 97.6 7.9E-05 1.7E-09 52.1 3.6 27 7-33 26-52 (171)
470 cd03295 ABC_OpuCA_Osmoprotecti 97.6 7.3E-05 1.6E-09 55.2 3.5 28 6-33 24-51 (242)
471 cd03215 ABC_Carb_Monos_II This 97.6 7.2E-05 1.6E-09 52.9 3.3 28 6-33 23-50 (182)
472 PRK10895 lipopolysaccharide AB 97.6 7.2E-05 1.6E-09 55.2 3.5 28 6-33 26-53 (241)
473 PRK10771 thiQ thiamine transpo 97.6 7.2E-05 1.6E-09 54.9 3.4 28 6-33 22-49 (232)
474 PF00437 T2SE: Type II/IV secr 97.6 6.2E-05 1.3E-09 56.6 3.1 26 8-33 126-151 (270)
475 PRK09493 glnQ glutamine ABC tr 97.6 7.5E-05 1.6E-09 55.1 3.5 28 6-33 24-51 (240)
476 TIGR00073 hypB hydrogenase acc 97.6 7.6E-05 1.6E-09 53.9 3.4 28 7-34 20-47 (207)
477 PRK11247 ssuB aliphatic sulfon 97.6 7.6E-05 1.6E-09 55.8 3.5 28 6-33 35-62 (257)
478 COG0396 sufC Cysteine desulfur 97.6 9.1E-05 2E-09 53.7 3.7 33 6-38 27-59 (251)
479 TIGR03005 ectoine_ehuA ectoine 97.6 7.4E-05 1.6E-09 55.6 3.4 28 6-33 23-50 (252)
480 cd03251 ABCC_MsbA MsbA is an e 97.6 7.8E-05 1.7E-09 54.7 3.5 28 6-33 25-52 (234)
481 TIGR01189 ccmA heme ABC export 97.6 7.9E-05 1.7E-09 53.4 3.5 28 6-33 23-50 (198)
482 COG1220 HslU ATP-dependent pro 97.6 9.3E-05 2E-09 56.6 3.9 31 8-38 49-79 (444)
483 PRK13648 cbiO cobalt transport 97.6 7.7E-05 1.7E-09 56.0 3.5 27 7-33 33-59 (269)
484 PRK14274 phosphate ABC transpo 97.6 7.8E-05 1.7E-09 55.7 3.5 28 6-33 35-62 (259)
485 cd03298 ABC_ThiQ_thiamine_tran 97.6 8E-05 1.7E-09 53.8 3.5 28 6-33 21-48 (211)
486 TIGR00972 3a0107s01c2 phosphat 97.6 8E-05 1.7E-09 55.2 3.5 28 6-33 24-51 (247)
487 PRK13538 cytochrome c biogenes 97.5 8.2E-05 1.8E-09 53.6 3.4 28 6-33 24-51 (204)
488 PRK14256 phosphate ABC transpo 97.5 8.1E-05 1.8E-09 55.3 3.5 28 6-33 27-54 (252)
489 PRK14255 phosphate ABC transpo 97.5 8.1E-05 1.7E-09 55.3 3.5 27 6-32 28-54 (252)
490 cd03252 ABCC_Hemolysin The ABC 97.5 8.1E-05 1.8E-09 54.8 3.5 27 7-33 26-52 (237)
491 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00013 2.9E-09 45.4 4.0 31 11-41 1-34 (99)
492 PRK14267 phosphate ABC transpo 97.5 8.1E-05 1.7E-09 55.4 3.5 28 6-33 27-54 (253)
493 PRK14262 phosphate ABC transpo 97.5 8.3E-05 1.8E-09 55.2 3.5 26 6-31 26-51 (250)
494 TIGR01420 pilT_fam pilus retra 97.5 8.9E-05 1.9E-09 57.7 3.8 26 8-33 121-146 (343)
495 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 8E-05 1.7E-09 54.4 3.4 28 6-33 45-72 (224)
496 PF01443 Viral_helicase1: Vira 97.5 6E-05 1.3E-09 55.2 2.7 22 12-33 1-22 (234)
497 PRK14964 DNA polymerase III su 97.5 7.9E-05 1.7E-09 60.3 3.6 27 9-35 35-61 (491)
498 PRK11889 flhF flagellar biosyn 97.5 0.00011 2.4E-09 57.8 4.2 35 8-42 240-279 (436)
499 KOG2028 ATPase related to the 97.5 0.0001 2.3E-09 57.0 4.0 34 8-41 161-197 (554)
500 cd03244 ABCC_MRP_domain2 Domai 97.5 8.9E-05 1.9E-09 54.0 3.6 27 7-33 28-54 (221)
No 1
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=187.07 Aligned_cols=168 Identities=61% Similarity=1.072 Sum_probs=160.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHG 86 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~ 86 (176)
+-.+.|+|+|-||+||||+|..||+.+|+++++.++++++...+..+++.++..+++++.+++.++..+..+|.|+|+|.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVDyHg 84 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVDYHG 84 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEEeecc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHH
Q 030477 87 CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 87 ~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~ 166 (176)
.+.||..++|+||+|.||..++.+|+..|+++...+.++.+.+++..+.++..+.|.+..+......+.++....+.+++
T Consensus 85 Cd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~s~~~Eem~~ni~ri~ 164 (176)
T KOG3347|consen 85 CDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQSETKEEMESNISRIL 164 (176)
T ss_pred cCccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999988888899999999999
Q ss_pred HHHHhhcc
Q 030477 167 DWVRNWQP 174 (176)
Q Consensus 167 ~~~~~~~~ 174 (176)
+|.+.|.+
T Consensus 165 ~w~~~w~~ 172 (176)
T KOG3347|consen 165 NWTRMWKK 172 (176)
T ss_pred HHHHHHhh
Confidence 99999974
No 2
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.96 E-value=5.3e-28 Score=164.58 Aligned_cols=161 Identities=33% Similarity=0.527 Sum_probs=145.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDF 89 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~ 89 (176)
++|.|+|.||+||||+|+.|+ ++|+.+++..+++.........++...++..+.+.+...+...+..++.|+|+|...+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl 79 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHL 79 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhhc
Confidence 579999999999999999998 8999999999999999988888887888888999999999887777889999999999
Q ss_pred CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 90 FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 90 ~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
++. +|+||+|.++|+++.+|+..|||+.+++.+|.+.+.+.-.+.+..+.+.+...+++.+.|++++.+.+..++++-
T Consensus 80 ~~~--~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~~ 157 (180)
T COG1936 80 LPD--CDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGGG 157 (180)
T ss_pred CCC--CCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHccc
Confidence 983 799999999999999999999999999999999999999999999888666777777779999999999999875
Q ss_pred Hhhc
Q 030477 170 RNWQ 173 (176)
Q Consensus 170 ~~~~ 173 (176)
+.|.
T Consensus 158 ~~~~ 161 (180)
T COG1936 158 RKKR 161 (180)
T ss_pred ccCC
Confidence 5544
No 3
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.87 E-value=4.3e-22 Score=137.02 Aligned_cols=154 Identities=25% Similarity=0.347 Sum_probs=100.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhccccc-chH-HHHHHHHH----HhhcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVI-NED-LVCDELED----IMEQGG 79 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~-~l~~~i~~----~~~~~~ 79 (176)
++.|+|+|++||||||+++.||+.|+++|+|.|.++....-. +-+......+|. .+. .+.+.... +..+||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG 81 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG 81 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 467999999999999999999999999999999998775321 112222222333 122 22222222 124566
Q ss_pred eEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHHH
Q 030477 80 NIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIED 157 (176)
Q Consensus 80 ~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~e 157 (176)
+|+.......+.. ...+|||++|++++.+|+.. +..+|........+.+..+++++.+.|.+ +.++..+..+ ++
T Consensus 82 ~v~~~enr~~l~~--~g~vv~L~~~~e~l~~Rl~~-~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~-~~ 157 (172)
T COG0703 82 AVLSEENRNLLKK--RGIVVYLDAPFETLYERLQR-DRKRPLLQTEDPREELEELLEERQPLYREVADFIIDTDDRS-EE 157 (172)
T ss_pred cccCHHHHHHHHh--CCeEEEEeCCHHHHHHHhcc-ccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCCCCc-HH
Confidence 6665555555554 34799999999999999983 33344444333346688999999999998 3444444334 55
Q ss_pred HHHHHHHHH
Q 030477 158 ITRNIAILT 166 (176)
Q Consensus 158 v~~~i~~~~ 166 (176)
+.+.+...+
T Consensus 158 v~~~i~~~l 166 (172)
T COG0703 158 VVEEILEAL 166 (172)
T ss_pred HHHHHHHHH
Confidence 555555444
No 4
>PRK03839 putative kinase; Provisional
Probab=99.86 E-value=3.6e-20 Score=131.04 Aligned_cols=148 Identities=28% Similarity=0.426 Sum_probs=92.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCCC
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFF 90 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~~ 90 (176)
.|+|+|+|||||||+++.|++++|++++++|++++.......+...... ....+...+.....+.++|+|.+.....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~vIidG~~~~l~ 78 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEI---DFDKLAYFIEEEFKEKNVVLDGHLSHLL 78 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhc---CHHHHHHHHHHhccCCCEEEEecccccc
Confidence 6999999999999999999999999999999998776443333222211 1123333333333456788986543322
Q ss_pred CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecC--CCHHHHHHHHHHHHH
Q 030477 91 PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKS--DTIEDITRNIAILTD 167 (176)
Q Consensus 91 ~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~s~~ev~~~i~~~~~ 167 (176)
.++.+|||+++++++.+|+..|+..++...+.... .+.... ..+.|. ...++.++. .+++++.+.+...++
T Consensus 79 ---~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~-~~~~~~--~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~ 152 (180)
T PRK03839 79 ---PVDYVIVLRAHPKIIKERLKERGYSKKKILENVEA-ELVDVC--LCEALEEKEKVIEVDTTGKTPEEVVEEILELIK 152 (180)
T ss_pred ---CCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHH--HHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 26789999999999999999887533222211111 111110 011121 223344444 489988888877664
No 5
>PRK14532 adenylate kinase; Provisional
Probab=99.85 E-value=3.8e-20 Score=131.74 Aligned_cols=152 Identities=20% Similarity=0.371 Sum_probs=101.5
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh----hcCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM----EQGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~~ 80 (176)
.|+|.|+|||||||+|+.|++++|+.+++.+++++.... ....+..... ..+..+.+.+.+...+ .++++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 589999999999999999999999999999999987521 1122211111 1123344444444432 45789
Q ss_pred EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccch--hHHHHHHHHHHHHH---
Q 030477 81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN--IECEIFQVLLEEAK--- 139 (176)
Q Consensus 81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~--~~~~~~~~~~~~~~--- 139 (176)
|+| .||+. .++.+|+|++|++++.+|+..|.....+..+. .-..++..++....
T Consensus 82 vld-----g~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~ 156 (188)
T PRK14532 82 IFD-----GFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLL 156 (188)
T ss_pred EEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 44431 36789999999999999999885322222222 22345666655553
Q ss_pred hcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 140 ESYPE-DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 140 ~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
+.|.. +.++.+++. +++++.+.|...++
T Consensus 157 ~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 157 PYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 45654 567778774 89999988887763
No 6
>PLN02200 adenylate kinase family protein
Probab=99.85 E-value=1.8e-19 Score=132.00 Aligned_cols=166 Identities=14% Similarity=0.261 Sum_probs=103.8
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHh---
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIM--- 75 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~--- 75 (176)
++..+.+|+|+|+|||||||+|+.|++++|+++++.+++++..... ...+..... -.+..+...+.+...+
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~ 118 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS 118 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 3445678999999999999999999999999999999999875322 111111111 1123344444443322
Q ss_pred hcCCeEEcCCCCC-----CCC---CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHH---HHhcC
Q 030477 76 EQGGNIVDYHGCD-----FFP---ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEE---AKESY 142 (176)
Q Consensus 76 ~~~~~vid~~~~~-----~~~---~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~---~~~~~ 142 (176)
...++|+|+.-.. .+. ...++.+|+|++|++++.+|+.+|+.. +..++.+ ..++..+... ....|
T Consensus 119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~--r~dd~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQG--RVDDNIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357999953110 000 113788999999999999999988642 2222221 1233333332 23345
Q ss_pred CC-CcEEEecCC-CHHHHHHHHHHHHHHHHhh
Q 030477 143 PE-DIVLALKSD-TIEDITRNIAILTDWVRNW 172 (176)
Q Consensus 143 ~~-~~~i~~~~~-s~~ev~~~i~~~~~~~~~~ 172 (176)
.. +.++.+|+. ++++|.+.+..++....+-
T Consensus 197 ~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~~ 228 (234)
T PLN02200 197 SKKGKLYTINAVGTVDEIFEQVRPIFAACEAM 228 (234)
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHHcCCc
Confidence 44 456777766 8999999999888665443
No 7
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.85 E-value=9.7e-20 Score=125.24 Aligned_cols=158 Identities=21% Similarity=0.386 Sum_probs=113.7
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--CCchhhhccc-----ccchHHHHHHHHHHh--
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--DGWDDELECH-----VINEDLVCDELEDIM-- 75 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~l~~~i~~~~-- 75 (176)
.+.++++|++.|+|||||-|+|..+++++|+.++++++++|..... ..++.....+ +...+.+++.++..+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999999987543 2233222222 123345555555533
Q ss_pred --hcCCeEEcCCCCCCCCCC-------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHH--HHHHHHHHHH
Q 030477 76 --EQGGNIVDYHGCDFFPER-------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC--EIFQVLLEEA 138 (176)
Q Consensus 76 --~~~~~vid~~~~~~~~~~-------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~--~~~~~~~~~~ 138 (176)
...+++|| +||++ .+++++|++|+.+++.+|+..|+....+..++.+. .++..+....
T Consensus 84 ~~~~~~fLID-----GyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t 158 (195)
T KOG3079|consen 84 SGDSNGFLID-----GYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKST 158 (195)
T ss_pred cCCCCeEEec-----CCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcc
Confidence 22448999 78874 26799999999999999999999864566555543 2344443333
Q ss_pred ---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 139 ---KESYPE-DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 139 ---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
.+.|.. +.+..++.. ++++|-..+.++++
T Consensus 159 ~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 159 LPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred hHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence 345665 677788876 89999988888775
No 8
>PRK14531 adenylate kinase; Provisional
Probab=99.84 E-value=1.6e-19 Score=128.06 Aligned_cols=150 Identities=27% Similarity=0.492 Sum_probs=100.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh---hcCCe
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM---EQGGN 80 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~---~~~~~ 80 (176)
+.|+|+|+|||||||+++.|++++|+++++.+++++.... ....+..... ..+.+..+...+...+ ...++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~ 82 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW 82 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence 4699999999999999999999999999999999887532 2223222211 1234444555554333 34689
Q ss_pred EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH---Hhc
Q 030477 81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA---KES 141 (176)
Q Consensus 81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~ 141 (176)
|+| ++|+. .++.+++|++|++++.+|+..|++.... . ..-..++..+.... ...
T Consensus 83 ilD-----Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~-~-e~i~~Rl~~y~~~~~pv~~~ 155 (183)
T PRK14531 83 LLD-----GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDN-E-AVIRNRLEVYREKTAPLIDH 155 (183)
T ss_pred EEe-----CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCC-H-HHHHHHHHHHHHHHHHHHHH
Confidence 999 55543 2567999999999999999988753221 1 11123444443333 345
Q ss_pred CCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477 142 YPE-DIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 142 ~~~-~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
|.. +.++.+++. +++++.+.+...+
T Consensus 156 y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 156 YRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 554 466777775 8888888887654
No 9
>PRK13948 shikimate kinase; Provisional
Probab=99.84 E-value=1.7e-20 Score=132.23 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=101.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhcccccc-hHHHHHHHHH----H-hh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVIN-EDLVCDELED----I-ME 76 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~~~i~~----~-~~ 76 (176)
+.++..|+|+|++||||||+++.|++.+|++++|.|.++...... +.+......++.. +..+++.+.. + ..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~ 86 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL 86 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 557789999999999999999999999999999999887654321 1111111112211 1122222211 1 12
Q ss_pred cCCeEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCH
Q 030477 77 QGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTI 155 (176)
Q Consensus 77 ~~~~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~ 155 (176)
+++++++......+.. ...+|||++|++++.+|+..+ .++........+.+..+++.+.+.|.. +.++++++.++
T Consensus 87 GgG~v~~~~n~~~l~~--~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t~~~~~ 162 (182)
T PRK13948 87 GGGTFMHEENRRKLLS--RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPVYRQATIHVSTDGRRS 162 (182)
T ss_pred CCcEEcCHHHHHHHHc--CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence 3344443323233333 356999999999999999543 234443222235678888888888865 67777777799
Q ss_pred HHHHHHHHHHHHH
Q 030477 156 EDITRNIAILTDW 168 (176)
Q Consensus 156 ~ev~~~i~~~~~~ 168 (176)
+++.+.|...+..
T Consensus 163 ~ei~~~i~~~l~~ 175 (182)
T PRK13948 163 EEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888777644
No 10
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.84 E-value=3.7e-19 Score=126.13 Aligned_cols=156 Identities=21% Similarity=0.402 Sum_probs=97.2
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHhh---cCCeE
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIME---QGGNI 81 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~~---~~~~v 81 (176)
+|+|+|+|||||||+|+.|++++|+.+++.+++++..... ...+..... ..+..+.+.+.+...+. +.++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 5899999999999999999999999999999998876431 122221111 12334444555554332 45799
Q ss_pred EcCCCCC---------CCC-CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHH---HhcCCC-C
Q 030477 82 VDYHGCD---------FFP-ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEA---KESYPE-D 145 (176)
Q Consensus 82 id~~~~~---------~~~-~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~-~ 145 (176)
+|..... .+. ...++.+|+|++|++++.+|+..|+....+..++.+ ..++..+.... .+.|.. +
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~ 160 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG 160 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9953210 000 014678999999999999999988753222222221 12233232222 233443 3
Q ss_pred cEEEecCC-CHHHHHHHHHHHH
Q 030477 146 IVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 146 ~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
.++.+|+. +++++.+.+.+++
T Consensus 161 ~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 161 KVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 55666665 8889888887765
No 11
>PRK13808 adenylate kinase; Provisional
Probab=99.83 E-value=7.2e-19 Score=133.49 Aligned_cols=156 Identities=21% Similarity=0.341 Sum_probs=104.1
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh----hcCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM----EQGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~~ 80 (176)
.|+|+|||||||||+++.|++.+|+.+++.+++++.... ....+..... .....+.+...+...+ ...+|
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ 81 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF 81 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence 589999999999999999999999999999999986421 1222221111 1233445555554433 34689
Q ss_pred EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCC------CccccchhH--HHHHHHHHH
Q 030477 81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYT------GAKLTNNIE--CEIFQVLLE 136 (176)
Q Consensus 81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~------~~~~~~~~~--~~~~~~~~~ 136 (176)
||| +||++ .+|++|+|++|++++.+|+..|... ..+.+++.+ ..++..+..
T Consensus 82 ILD-----GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~ 156 (333)
T PRK13808 82 ILD-----GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRA 156 (333)
T ss_pred EEe-----CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHH
Confidence 999 66654 4789999999999999999987321 112222221 123433333
Q ss_pred HH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHHHHh
Q 030477 137 EA---KESYPE-DIVLALKSD-TIEDITRNIAILTDWVRN 171 (176)
Q Consensus 137 ~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~~~ 171 (176)
.. ...|.+ +.++.+|+. ++++|.+.|..+++.+..
T Consensus 157 ~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 157 QTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 32 345665 467788876 789999999999976543
No 12
>PRK14527 adenylate kinase; Provisional
Probab=99.83 E-value=7.2e-19 Score=125.50 Aligned_cols=157 Identities=20% Similarity=0.308 Sum_probs=103.2
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhh----ccc-ccchHHHHHHHHHHhh--
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDEL----ECH-VINEDLVCDELEDIME-- 76 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~----~~~-~~~~~~l~~~i~~~~~-- 76 (176)
.+.++++|+|+|+|||||||+|+.|++++|+.+++.+++++.... ....+... ... ....+.+...+...+.
T Consensus 2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~ 81 (191)
T PRK14527 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM 81 (191)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 345789999999999999999999999999999999999876432 11222111 111 1233445555555443
Q ss_pred -cCCeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHH
Q 030477 77 -QGGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEE 137 (176)
Q Consensus 77 -~~~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~ 137 (176)
..++|+| +||+. .++.+++|++|++++.+|+.+|+....+..++. -..++..+...
T Consensus 82 ~~~~~VlD-----Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~ 156 (191)
T PRK14527 82 EPVRVIFD-----GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQ 156 (191)
T ss_pred CCCcEEEc-----CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 2569999 34432 256789999999999999999875433433322 12234334333
Q ss_pred HH---hcCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477 138 AK---ESYPE-DIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 138 ~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
.. ..|.+ +.++.+++. +++++.+.+...+
T Consensus 157 ~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 157 TQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred hHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 32 35665 567778776 8988888877653
No 13
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.83 E-value=3.2e-19 Score=120.32 Aligned_cols=159 Identities=20% Similarity=0.259 Sum_probs=103.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch-hhhccccc---chHHHHHHH-HHHhhcCCeEEcC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD-DELECHVI---NEDLVCDEL-EDIMEQGGNIVDY 84 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~i-~~~~~~~~~vid~ 84 (176)
++|.|.|+|||||||+++.||+++|+++++.+.++++........ .++..+.- .-+...+.- ..+...+++|++.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVleg 80 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLEG 80 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEhh
Confidence 478999999999999999999999999999999988874322221 12221111 112222222 2234578999998
Q ss_pred CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHH-HHH-HhcCCC--------CcEEEecCCC
Q 030477 85 HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLL-EEA-KESYPE--------DIVLALKSDT 154 (176)
Q Consensus 85 ~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~--------~~~i~~~~~s 154 (176)
+...++.+..+++-|||.+|..++.+|+.+|.. ....+........... ..+ ...|.- +.+++++.-+
T Consensus 81 rLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REg--i~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~ 158 (179)
T COG1102 81 RLAGWIVREYADLKIWLKAPLEVRAERIAKREG--IDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWD 158 (179)
T ss_pred hhHHHHhccccceEEEEeCcHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCC
Confidence 887777776788999999999999999998863 2222111111111111 111 123443 3666666668
Q ss_pred HHHHHHHHHHHHHHHH
Q 030477 155 IEDITRNIAILTDWVR 170 (176)
Q Consensus 155 ~~ev~~~i~~~~~~~~ 170 (176)
++++...+...++...
T Consensus 159 ~~~v~~il~~aid~~~ 174 (179)
T COG1102 159 PEEVFLILLDAIDALS 174 (179)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9888888877776543
No 14
>PRK14528 adenylate kinase; Provisional
Probab=99.83 E-value=3.6e-19 Score=126.48 Aligned_cols=151 Identities=21% Similarity=0.325 Sum_probs=100.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHH----HhhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELED----IMEQGG 79 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~----~~~~~~ 79 (176)
+.|+|+|+|||||||+|+.|++++|+++++.+++++.... ....+.....++ .....+...+.+ .....+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 6799999999999999999999999999999999877532 222222211111 122333333333 323467
Q ss_pred eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHH---
Q 030477 80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEA--- 138 (176)
Q Consensus 80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~--- 138 (176)
+|+| ++|+. .++.+|+|++|++++.+|+..|.....+..++.+ ..++..+....
T Consensus 82 ~viD-----G~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv 156 (186)
T PRK14528 82 FLLD-----GFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPL 156 (186)
T ss_pred EEEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHH
Confidence 9999 44432 3789999999999999999988654334333332 23444444433
Q ss_pred HhcCCC-CcEEEecCC-CHHHHHHHHHHH
Q 030477 139 KESYPE-DIVLALKSD-TIEDITRNIAIL 165 (176)
Q Consensus 139 ~~~~~~-~~~i~~~~~-s~~ev~~~i~~~ 165 (176)
...|.. +.++.+++. ++++|.+.+...
T Consensus 157 ~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 157 LDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 345665 567788876 899888887654
No 15
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.82 E-value=3.7e-19 Score=124.98 Aligned_cols=156 Identities=22% Similarity=0.278 Sum_probs=95.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh----cccccchHHHHHHHHHHhhcCCeE
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL----ECHVINEDLVCDELEDIMEQGGNI 81 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~v 81 (176)
|.+++.|+|+|+|||||||+|+.|++.+|+++++.|++....... .....+ ...+. +...+.+..+....++|
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~-~~~~~~~~~g~~~~~--~~~~~~~~~l~~~~~~v 77 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK-SIPEIFEEEGEAAFR--ELEEEVLAELLARHNLV 77 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC-CHHHHHHHHCHHHHH--HHHHHHHHHHHhcCCCE
Confidence 567889999999999999999999999999999999887653211 111100 00000 11122233333332333
Q ss_pred EcC--------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEec
Q 030477 82 VDY--------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALK 151 (176)
Q Consensus 82 id~--------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~ 151 (176)
+.. .....+.. ...+|||++|++++.+|+..|.. ++........+.+..++..+.+.|.. +.+++++
T Consensus 78 i~~g~~~~~~~~~r~~l~~--~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~ 154 (175)
T PRK00131 78 ISTGGGAVLREENRALLRE--RGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPLYEEVADITVETD 154 (175)
T ss_pred EEeCCCEeecHHHHHHHHh--CCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCC
Confidence 321 11112211 35789999999999999987653 22222111223455555555554433 5778888
Q ss_pred CCCHHHHHHHHHHHHH
Q 030477 152 SDTIEDITRNIAILTD 167 (176)
Q Consensus 152 ~~s~~ev~~~i~~~~~ 167 (176)
+.+++++.+.|...++
T Consensus 155 ~~~~~e~~~~I~~~v~ 170 (175)
T PRK00131 155 GRSPEEVVNEILEKLE 170 (175)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8899999888888875
No 16
>PRK13949 shikimate kinase; Provisional
Probab=99.82 E-value=3.8e-20 Score=129.41 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=91.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC--C-chhhhccccc-chHHHHHHHHHHhhcCCeEE-cC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD--G-WDDELECHVI-NEDLVCDELEDIMEQGGNIV-DY 84 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-~~~~l~~~i~~~~~~~~~vi-d~ 84 (176)
..|+|.|+|||||||+++.|++.+|+++++.|.++....... . +.......+. .+..++.. +....++|+ ..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~---l~~~~~~vis~G 78 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHE---VAEFEDVVISTG 78 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHH---HHhCCCEEEEcC
Confidence 579999999999999999999999999999998876542110 0 1111111111 11122222 222234444 22
Q ss_pred -------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchh---HHHHHHHHHHHHHhcCCC-CcEEEecCC
Q 030477 85 -------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI---ECEIFQVLLEEAKESYPE-DIVLALKSD 153 (176)
Q Consensus 85 -------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~~~~~ 153 (176)
.....++. .+.+|||++|++++.+|+..+...+|...... ..+.+..+++.+.+.|.. +.++++++.
T Consensus 79 gg~~~~~~~~~~l~~--~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~ 156 (169)
T PRK13949 79 GGAPCFFDNMELMNA--SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNADKL 156 (169)
T ss_pred CcccCCHHHHHHHHh--CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECCCC
Confidence 22223333 46899999999999999985443344442211 123456677888887776 567777777
Q ss_pred CHHHHHHHHH
Q 030477 154 TIEDITRNIA 163 (176)
Q Consensus 154 s~~ev~~~i~ 163 (176)
+++++.+.|.
T Consensus 157 ~~~e~~~~I~ 166 (169)
T PRK13949 157 EDESQIEQLV 166 (169)
T ss_pred CHHHHHHHHH
Confidence 8876666554
No 17
>PLN02674 adenylate kinase
Probab=99.82 E-value=5.7e-19 Score=129.25 Aligned_cols=155 Identities=20% Similarity=0.377 Sum_probs=104.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhcccc-----cchHHHHHHHHHHh----h
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECHV-----INEDLVCDELEDIM----E 76 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~~i~~~~----~ 76 (176)
...+.|+|.|||||||||+|+.|++++|+++++.+++++... .....+.....++ ...+.+...+...+ .
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 445789999999999999999999999999999999998763 2223333222221 23344444454433 3
Q ss_pred cCCeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC---------------------
Q 030477 77 QGGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG--------------------- 119 (176)
Q Consensus 77 ~~~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~--------------------- 119 (176)
..++|+| +||++ .++.+|+|++|.+++.+|+..|....
T Consensus 109 ~~g~ilD-----GfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~ 183 (244)
T PLN02674 109 QKGFILD-----GFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 183 (244)
T ss_pred CCcEEEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccc
Confidence 4689999 77764 36789999999999999999883210
Q ss_pred ------ccccchhH--HHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477 120 ------AKLTNNIE--CEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 120 ------~~~~~~~~--~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
.+..++.+ ..++..+.... .+.|.. +.++.+++. ++++|.+.|..++
T Consensus 184 ~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 184 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 01111111 23444444433 345766 577788876 8999999888765
No 18
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.82 E-value=6.9e-20 Score=128.54 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=99.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch---hh-hccccc-chHHHHHHHHHHhhcCCe
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD---DE-LECHVI-NEDLVCDELEDIMEQGGN 80 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~-~~~~l~~~i~~~~~~~~~ 80 (176)
|.++..|+|.|++||||||+++.|++.+|+++++.|..+...... ... .. ....+. .+..+++.+ ....++
T Consensus 1 ~~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~-~i~~~~~~~g~~~fr~~e~~~l~~l---~~~~~~ 76 (172)
T PRK05057 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA-DIGWVFDVEGEEGFRDREEKVINEL---TEKQGI 76 (172)
T ss_pred CCCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc-CHhHHHHHhCHHHHHHHHHHHHHHH---HhCCCE
Confidence 345678999999999999999999999999999999765543211 111 10 111111 112222222 222333
Q ss_pred EEcC--------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEe
Q 030477 81 IVDY--------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLAL 150 (176)
Q Consensus 81 vid~--------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~ 150 (176)
|+.. .....+.. .+.+|||++|++++.+|+..+.. +|...+....+.+..+++.+.+.|.. +.++++
T Consensus 77 vi~~ggg~v~~~~~~~~l~~--~~~vv~L~~~~e~~~~Ri~~~~~-rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~idt 153 (172)
T PRK05057 77 VLATGGGSVKSRETRNRLSA--RGVVVYLETTIEKQLARTQRDKK-RPLLQVDDPREVLEALANERNPLYEEIADVTIRT 153 (172)
T ss_pred EEEcCCchhCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEEC
Confidence 3321 11223332 46799999999999999985543 34443222234577788888888876 677777
Q ss_pred cCCCHHHHHHHHHHHHH
Q 030477 151 KSDTIEDITRNIAILTD 167 (176)
Q Consensus 151 ~~~s~~ev~~~i~~~~~ 167 (176)
+..+++++.+.+.+.++
T Consensus 154 ~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 154 DDQSAKVVANQIIHMLE 170 (172)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 77799998888776653
No 19
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.81 E-value=3.6e-18 Score=121.38 Aligned_cols=161 Identities=20% Similarity=0.322 Sum_probs=100.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc----c-cccchHHHHHHHHHH----h-h
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE----C-HVINEDLVCDELEDI----M-E 76 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~~~~~l~~~i~~~----~-~ 76 (176)
+.++|+|.|+|||||||+++.|++++|+.+++.+++++..... ...+.... . .....+.+.+.+... + .
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence 4579999999999999999999999999999999988775321 11111111 1 112233344444432 2 3
Q ss_pred cCCeEEcCCCCCC-----CCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHHHH---hcCCC
Q 030477 77 QGGNIVDYHGCDF-----FPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEEAK---ESYPE 144 (176)
Q Consensus 77 ~~~~vid~~~~~~-----~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~ 144 (176)
+.++|+|...... +.. ..++.+|||++|++++.+|+..|+....+..+.. -.+++..++.... ..|..
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~ 161 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYET 161 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4678998532110 000 1367899999999999999998875333333221 1234554444433 23443
Q ss_pred -CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477 145 -DIVLALKSD-TIEDITRNIAILTDW 168 (176)
Q Consensus 145 -~~~i~~~~~-s~~ev~~~i~~~~~~ 168 (176)
+.++.+|+. +++++.+.+...++.
T Consensus 162 ~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 162 KGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 345556554 899998888877753
No 20
>PRK13947 shikimate kinase; Provisional
Probab=99.81 E-value=1.7e-19 Score=126.55 Aligned_cols=152 Identities=21% Similarity=0.285 Sum_probs=91.6
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC---chhhhcccccc-hHHHHHHHHH----Hh-hcCCe
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG---WDDELECHVIN-EDLVCDELED----IM-EQGGN 80 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~i~~----~~-~~~~~ 80 (176)
+.|+|+|+|||||||+|+.||+.+|+++++.|.++........ +.......+.+ +..+++.+.. ++ .++++
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~ 81 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV 81 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence 4699999999999999999999999999999988766421110 11111111111 1122222221 00 12334
Q ss_pred EEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCHHHHH
Q 030477 81 IVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTIEDIT 159 (176)
Q Consensus 81 vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~ev~ 159 (176)
+++......+.. .+.+|||++|++++.+|+..|... +........+.+...+..+.+.|.. +.++++++.+++++.
T Consensus 82 vl~~~~~~~l~~--~~~vv~L~~~~~~l~~Rl~~r~~r-p~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~ 158 (171)
T PRK13947 82 VLNPENVVQLRK--NGVVICLKARPEVILRRVGKKKSR-PLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTIDEVA 158 (171)
T ss_pred cCCHHHHHHHHh--CCEEEEEECCHHHHHHHhcCCCCC-CCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHH
Confidence 444333333332 356999999999999999876542 2222121123344556666666644 677877777999888
Q ss_pred HHHHH
Q 030477 160 RNIAI 164 (176)
Q Consensus 160 ~~i~~ 164 (176)
+.|..
T Consensus 159 ~~I~~ 163 (171)
T PRK13947 159 EEIIK 163 (171)
T ss_pred HHHHH
Confidence 88776
No 21
>PRK04182 cytidylate kinase; Provisional
Probab=99.81 E-value=1.2e-18 Score=123.06 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=92.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCc-----hhhhcccccchHHHHHHHHHHh-hcCCeEEc
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGW-----DDELECHVINEDLVCDELEDIM-EQGGNIVD 83 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~~~-~~~~~vid 83 (176)
++|+|+|++||||||+++.|++++|+++++.+++.+........ .............+...+.... .++++|++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 80 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVLE 80 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEEE
Confidence 37999999999999999999999999999988876654211111 1100101100112222333333 45678888
Q ss_pred CCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccc--hhHH------HHHHHHHHHHHhcCCC-CcEEEecCCC
Q 030477 84 YHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN--NIEC------EIFQVLLEEAKESYPE-DIVLALKSDT 154 (176)
Q Consensus 84 ~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~-~~~i~~~~~s 154 (176)
......+....++++|||++|++++.+|+..|... +.... .... ..+..++....+.|.. +.+++++..+
T Consensus 81 g~~~~~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~-~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~ 159 (180)
T PRK04182 81 GRLAGWMAKDYADLKIWLKAPLEVRAERIAEREGI-SVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWD 159 (180)
T ss_pred EeecceEecCCCCEEEEEECCHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCC
Confidence 65444443333678999999999999999887532 11110 0000 0111111111111222 5677777779
Q ss_pred HHHHHHHHHHHHHH
Q 030477 155 IEDITRNIAILTDW 168 (176)
Q Consensus 155 ~~ev~~~i~~~~~~ 168 (176)
++++.+.|...+..
T Consensus 160 ~~~~~~~I~~~~~~ 173 (180)
T PRK04182 160 PEGVFDIILTAIDK 173 (180)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888877754
No 22
>PRK00625 shikimate kinase; Provisional
Probab=99.80 E-value=1.7e-19 Score=126.29 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=85.6
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhh----hccccc-chHHHHHHHHH---H-hhcC
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDE----LECHVI-NEDLVCDELED---I-MEQG 78 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~-~~~~l~~~i~~---~-~~~~ 78 (176)
.|+|+|+|||||||+++.|++++|++++++|++++..... ....+. ....+. .+..+++.+.. + ..++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~GG 81 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVALGG 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEECCC
Confidence 5999999999999999999999999999999998764221 111111 111111 11112222110 0 0222
Q ss_pred CeEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEe------
Q 030477 79 GNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLAL------ 150 (176)
Q Consensus 79 ~~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~------ 150 (176)
+.+++......+.. .+.+|||++|++++.+|+..|+....... .+.+..+++.+.+.|.. +.++++
T Consensus 82 g~~~~~e~~~~l~~--~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~----~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~~~ 155 (173)
T PRK00625 82 GTLMIEPSYAHIRN--RGLLVLLSLPIATIYQRLQKRGLPERLKH----APSLEEILSQRIDRMRSIADYIFSLDHVAET 155 (173)
T ss_pred CccCCHHHHHHHhc--CCEEEEEECCHHHHHHHHhcCCCCcccCc----HHHHHHHHHHHHHHHHHHCCEEEeCCCcccC
Confidence 33333222223322 35799999999999999998865321111 23466677777777754 444444
Q ss_pred cCCCHHHHHHHHH
Q 030477 151 KSDTIEDITRNIA 163 (176)
Q Consensus 151 ~~~s~~ev~~~i~ 163 (176)
++.+...+.+.+.
T Consensus 156 ~~~~~~~~~~~~~ 168 (173)
T PRK00625 156 SSESLMRACQSFC 168 (173)
T ss_pred CCCCHHHHHHHHH
Confidence 3445555554443
No 23
>PRK14530 adenylate kinase; Provisional
Probab=99.80 E-value=1.2e-17 Score=121.40 Aligned_cols=153 Identities=25% Similarity=0.458 Sum_probs=99.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc------CCCchhh---hcc-cccchHHHHHHHHHHh-hcC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL------HDGWDDE---LEC-HVINEDLVCDELEDIM-EQG 78 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~------~~~~~~~---~~~-~~~~~~~l~~~i~~~~-~~~ 78 (176)
+.|+|.|+|||||||+|+.|++++|+++++.+++++.... ...++.. ... .....+.+...+...+ ...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~~ 83 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDAD 83 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999987641 1222211 111 1122334444555544 346
Q ss_pred CeEEcCCCCCCCCCC-----------cccEEEEEeCChHHHHHHHhhcCCCCc---------------------------
Q 030477 79 GNIVDYHGCDFFPER-----------WFDRVVVLQTENSVLYDRLTKRGYTGA--------------------------- 120 (176)
Q Consensus 79 ~~vid~~~~~~~~~~-----------~~~~vi~l~~~~~~~~~R~~~r~~~~~--------------------------- 120 (176)
++|+|. +++. .++.+|+|++|++++.+|+.+|.....
T Consensus 84 ~~IldG-----~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~ 158 (215)
T PRK14530 84 GFVLDG-----YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQ 158 (215)
T ss_pred CEEEcC-----CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccC
Confidence 899994 4432 378899999999999999998753110
Q ss_pred cccchh--HHHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 121 KLTNNI--ECEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 121 ~~~~~~--~~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
+..+.. -..++..+.... ...|.. +.++.+|+. +++++.+.+...++
T Consensus 159 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 159 RDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 111111 122444444333 235554 467778876 89999999888775
No 24
>PLN02459 probable adenylate kinase
Probab=99.79 E-value=8.3e-18 Score=123.75 Aligned_cols=156 Identities=23% Similarity=0.328 Sum_probs=105.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh------
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM------ 75 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~------ 75 (176)
+++.|+|.|||||||||+|+.|++++|+.+++.+++++.... ...++.....+ +...+.+.+.+...+
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 446688899999999999999999999999999999987532 22333322222 234455555555433
Q ss_pred hcCCeEEcCCCCCCCCCC-----------cccEEEEEeCChHHHHHHHhhcCCCC-------------------------
Q 030477 76 EQGGNIVDYHGCDFFPER-----------WFDRVVVLQTENSVLYDRLTKRGYTG------------------------- 119 (176)
Q Consensus 76 ~~~~~vid~~~~~~~~~~-----------~~~~vi~l~~~~~~~~~R~~~r~~~~------------------------- 119 (176)
...++|+| +||++ ..+.+|+|++|.+++.+|+..|....
T Consensus 108 ~~~g~iLD-----GFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~ 182 (261)
T PLN02459 108 GESGFILD-----GFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMP 182 (261)
T ss_pred CCceEEEe-----CCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCC
Confidence 23689999 77774 35789999999999999999874210
Q ss_pred -------------ccccchhH--HHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477 120 -------------AKLTNNIE--CEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTDW 168 (176)
Q Consensus 120 -------------~~~~~~~~--~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~ 168 (176)
.+..++.+ ..++..+..+.. ..|.. +.++.+++. ++++|.+.+..+++.
T Consensus 183 p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 183 PLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred CCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 01111111 234444444433 45665 577888876 899999999988753
No 25
>PLN02199 shikimate kinase
Probab=99.78 E-value=1.5e-18 Score=129.13 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=100.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch----hhhccccc-chHHHHHHHHH----H-hhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD----DELECHVI-NEDLVCDELED----I-MEQ 77 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~i~~----~-~~~ 77 (176)
+++.|+|+|++||||||+++.|++.+|++++|+|.++.......... ......+. .+..++..+.. + ..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStG 180 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTG 180 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 56789999999999999999999999999999999988752111111 11111222 12222222221 1 133
Q ss_pred CCeEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcC-CCCccccc-hhH-----HHHHHHHHHHHHhcCCC-CcEEE
Q 030477 78 GGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRG-YTGAKLTN-NIE-----CEIFQVLLEEAKESYPE-DIVLA 149 (176)
Q Consensus 78 ~~~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~-~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~-~~~i~ 149 (176)
+|+++.......+. .+.+|||++|++++.+|+...+ ..+|.... +.+ .+.+..+++++.+.|.. +.+|.
T Consensus 181 GG~V~~~~n~~~L~---~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~ 257 (303)
T PLN02199 181 GGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVS 257 (303)
T ss_pred CcccCCHHHHHHHh---CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEe
Confidence 44444433333333 2579999999999999998522 23444321 111 24678889999998887 56666
Q ss_pred ------------ecCCCHHHHHHHHHHHHHHH
Q 030477 150 ------------LKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 150 ------------~~~~s~~ev~~~i~~~~~~~ 169 (176)
+++.+++++...|...+...
T Consensus 258 ~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~ 289 (303)
T PLN02199 258 LENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF 289 (303)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 55668888777766665443
No 26
>PRK02496 adk adenylate kinase; Provisional
Probab=99.78 E-value=1.3e-17 Score=118.29 Aligned_cols=150 Identities=25% Similarity=0.437 Sum_probs=96.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHh----hcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIM----EQGG 79 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~ 79 (176)
+.|+|+|+|||||||+++.|++++|+++++.+++++..... ...+..... .....+.+...+...+ ...+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 56899999999999999999999999999999998775321 122211111 1123344444444433 3357
Q ss_pred eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH---Hh
Q 030477 80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA---KE 140 (176)
Q Consensus 80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~ 140 (176)
+|+| +||+. .++.+|+|++|++++.+|+..|+.... .+..-..++..+.... ..
T Consensus 82 ~vld-----GfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd--~~~~~~~r~~~y~~~~~~v~~ 154 (184)
T PRK02496 82 WILD-----GFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDD--TEEVIRRRLEVYREQTAPLID 154 (184)
T ss_pred EEEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999 44431 367899999999999999998865321 1122222333333322 22
Q ss_pred cCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477 141 SYPE-DIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 141 ~~~~-~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
.|.. +.++.+|+. +++++.+.+..++
T Consensus 155 ~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 155 YYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 4443 456677765 8999988887665
No 27
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.77 E-value=1.9e-17 Score=119.88 Aligned_cols=150 Identities=22% Similarity=0.393 Sum_probs=98.2
Q ss_pred EEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc----c-cccchHHHHHHHHHHhh-----cCCe
Q 030477 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE----C-HVINEDLVCDELEDIME-----QGGN 80 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~~~~~l~~~i~~~~~-----~~~~ 80 (176)
|+|+|+|||||||+|+.|++++|+++++.+++++..... ...+.... . .....+.+.+.+...+. ..+|
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 899999999999999999999999999999999875321 12222111 1 12234445555554332 3589
Q ss_pred EEcCCCCCCCCCC-------------cccEEEEEeCChHHHHHHHhhcCCCC---------------------------c
Q 030477 81 IVDYHGCDFFPER-------------WFDRVVVLQTENSVLYDRLTKRGYTG---------------------------A 120 (176)
Q Consensus 81 vid~~~~~~~~~~-------------~~~~vi~l~~~~~~~~~R~~~r~~~~---------------------------~ 120 (176)
|+| ++|+. .++.+|+|++|++++.+|+..|.... .
T Consensus 82 ilD-----GfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~ 156 (210)
T TIGR01351 82 ILD-----GFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQ 156 (210)
T ss_pred EEe-----CCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCcccc
Confidence 999 45442 36789999999999999999885210 0
Q ss_pred cccchh--HHHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477 121 KLTNNI--ECEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 121 ~~~~~~--~~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
+..++. -..++..+.... ...|.. +.++.+++. ++++|.+.|..++
T Consensus 157 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 157 REDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 111111 112444444333 235554 467778876 8999988887765
No 28
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.77 E-value=1.5e-17 Score=120.80 Aligned_cols=152 Identities=19% Similarity=0.368 Sum_probs=99.1
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHh----hcCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIM----EQGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~~ 80 (176)
.|+|+|+|||||||+|+.|++++|+.+++.+++++..... ...+..... .....+.+.+.+...+ ...++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~ 81 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF 81 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence 5999999999999999999999999999999998864321 222222111 1223444555555433 23589
Q ss_pred EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC-------------------------
Q 030477 81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG------------------------- 119 (176)
Q Consensus 81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~------------------------- 119 (176)
|+|. +|+. .++.+|+|++|.+++.+|+..|....
T Consensus 82 VlDG-----fPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ 156 (215)
T PRK00279 82 LLDG-----FPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEE 156 (215)
T ss_pred EEec-----CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCc
Confidence 9993 3332 25689999999999999999885311
Q ss_pred --ccccchh--HHHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 120 --AKLTNNI--ECEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 120 --~~~~~~~--~~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
.+..+.. -..++..+.... ...|.. +.++.+|+. ++++|.+.+..+++
T Consensus 157 l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 157 LIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 1111111 112333333332 345655 467788876 89999999888875
No 29
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.77 E-value=3e-17 Score=114.97 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=90.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch-hhhcccc-c---chHHHHHHHHHHh-hcCCeEEc
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD-DELECHV-I---NEDLVCDELEDIM-EQGGNIVD 83 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~l~~~i~~~~-~~~~~vid 83 (176)
++|+|+|++||||||+|+.|++++|+++++.+++.+......... ..+.... . -...+...+.... .++++|++
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~ 80 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLE 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEE
Confidence 379999999999999999999999999999988776542111110 0000000 0 0122233333333 45678888
Q ss_pred CCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCC-CccccchhHHHHHHHHHHHH-HhcCCC--------CcEEEecCC
Q 030477 84 YHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYT-GAKLTNNIECEIFQVLLEEA-KESYPE--------DIVLALKSD 153 (176)
Q Consensus 84 ~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~i~~~~~ 153 (176)
......+....++++|||++|++++.+|+.+|+.. .+........ .......+ ...|.. +.+++++..
T Consensus 81 g~~~~~~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~--~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~ 158 (171)
T TIGR02173 81 SRLAGWIVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIE--REESEKRRYLKFYGIDIDDLSIYDLVINTSNW 158 (171)
T ss_pred ecccceeecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHH--HHHHHHHHHHHHhCCCccccccccEEEECCCC
Confidence 76544433444678999999999999999988632 1111111100 00011111 112222 567777777
Q ss_pred CHHHHHHHHHHHH
Q 030477 154 TIEDITRNIAILT 166 (176)
Q Consensus 154 s~~ev~~~i~~~~ 166 (176)
++++ .+.|..++
T Consensus 159 ~~~~-~~~i~~~~ 170 (171)
T TIGR02173 159 DPNN-VDIILDAL 170 (171)
T ss_pred CHHH-HHHHHHHh
Confidence 9998 77777654
No 30
>PRK13946 shikimate kinase; Provisional
Probab=99.77 E-value=4e-17 Score=115.84 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=95.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh---hhc-ccccchHHHHHHHHHHhhcCCeEEc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD---ELE-CHVINEDLVCDELEDIMEQGGNIVD 83 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~i~~~~~~~~~vid 83 (176)
.++.|+|+|++||||||+++.|++++|+++++.|.+...... ....+ .+. .++. ..-.+.+..+...+.+||.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~--~~e~~~l~~l~~~~~~Vi~ 85 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFR--DLERRVIARLLKGGPLVLA 85 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHH--HHHHHHHHHHHhcCCeEEE
Confidence 457899999999999999999999999999999987654421 11111 110 0111 1112233333334444553
Q ss_pred C-CCCCCCCC-----CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCHH
Q 030477 84 Y-HGCDFFPE-----RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTIE 156 (176)
Q Consensus 84 ~-~~~~~~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~ 156 (176)
. ......+. ...+.+|||++|++++.+|+..|... +........+.+..+++.+.+.|.. +.+++++..+++
T Consensus 86 ~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~r-p~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~~~~ 164 (184)
T PRK13946 86 TGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTR-PLLRTADPKETLARLMEERYPVYAEADLTVASRDVPKE 164 (184)
T ss_pred CCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCC-CcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHH
Confidence 2 21111221 02457899999999999999877532 2222111123456666666666654 566666666888
Q ss_pred HHHHHHHHHHHHH
Q 030477 157 DITRNIAILTDWV 169 (176)
Q Consensus 157 ev~~~i~~~~~~~ 169 (176)
++.+.+...++..
T Consensus 165 ~~~~~i~~~i~~~ 177 (184)
T PRK13946 165 VMADEVIEALAAY 177 (184)
T ss_pred HHHHHHHHHHHHh
Confidence 8877777766543
No 31
>PRK14529 adenylate kinase; Provisional
Probab=99.76 E-value=3.5e-17 Score=118.51 Aligned_cols=151 Identities=19% Similarity=0.312 Sum_probs=102.3
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHHHhh---cCCeE
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELEDIME---QGGNI 81 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~~~~---~~~~v 81 (176)
.|+|.|||||||||+++.|++++++++++.+++++.... ....+.....++ ...+.+.+.+...+. ..++|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i 81 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence 589999999999999999999999999999999987532 223333332222 233445555554332 46899
Q ss_pred EcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC--------------------------
Q 030477 82 VDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG-------------------------- 119 (176)
Q Consensus 82 id~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~-------------------------- 119 (176)
+| +||++ .++.+|+|++|.+++.+|+..|....
T Consensus 82 LD-----GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~ 156 (223)
T PRK14529 82 LD-----GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGG 156 (223)
T ss_pred Ee-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCC
Confidence 99 67764 36789999999999999999884211
Q ss_pred ---ccccch---hHHHHHHHHHHH------HHhcCC------CCcEEEecCC-CHHHHHHHHHHHH
Q 030477 120 ---AKLTNN---IECEIFQVLLEE------AKESYP------EDIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 120 ---~~~~~~---~~~~~~~~~~~~------~~~~~~------~~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
.+..+. .-..++..+..+ ..+.|. .+.++.+++. ++++|.+.|..++
T Consensus 157 ~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 157 ELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 022221 112355555543 123566 3567888876 8899988887765
No 32
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.76 E-value=6e-17 Score=118.13 Aligned_cols=104 Identities=29% Similarity=0.442 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHHHh------
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELEDIM------ 75 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~~~------ 75 (176)
.++.|+|.|||||||||+|+.|++++|+++++++++++.... ....+.....++ ...+.+.+.+...+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 445699999999999999999999999999999999987532 223333322221 23344444444422
Q ss_pred hcCCeEEcCCCCCCCCCC-----------cccEEEEEeCChHHHHHHHhhcC
Q 030477 76 EQGGNIVDYHGCDFFPER-----------WFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 76 ~~~~~vid~~~~~~~~~~-----------~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
...+|++| ++|++ .++.+++|++|.+++.+|+..|.
T Consensus 85 ~~~g~iLD-----GfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 85 CFKGFILD-----GFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred cCceEEEe-----cCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 23679999 55542 46789999999999999999874
No 33
>PRK14526 adenylate kinase; Provisional
Probab=99.75 E-value=7.7e-17 Score=116.33 Aligned_cols=152 Identities=20% Similarity=0.354 Sum_probs=99.8
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh----hcCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM----EQGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~~~~ 80 (176)
.|+|+|+|||||||+++.|++.+|+.+++.+++++.... ....+.....+ ....+.+.+.+...+ ...++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 488999999999999999999999999999999987532 22222222111 123344445444433 34689
Q ss_pred EEcCCCCCCCCCC----------c-ccEEEEEeCChHHHHHHHhhcCCCC---------------------------ccc
Q 030477 81 IVDYHGCDFFPER----------W-FDRVVVLQTENSVLYDRLTKRGYTG---------------------------AKL 122 (176)
Q Consensus 81 vid~~~~~~~~~~----------~-~~~vi~l~~~~~~~~~R~~~r~~~~---------------------------~~~ 122 (176)
|+| +||+. . ...+++|.+|++++.+|+..|.... .+.
T Consensus 82 ilD-----GfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~ 156 (211)
T PRK14526 82 ILD-----GFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRK 156 (211)
T ss_pred EEE-----CCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccC
Confidence 999 77764 1 1357889999999999999885211 112
Q ss_pred cchhH--HHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 123 TNNIE--CEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 123 ~~~~~--~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
.++.+ ..++..+.... .+.|.. +.++.+++. ++++|.+.+..+++
T Consensus 157 DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~ 208 (211)
T PRK14526 157 DDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIIS 208 (211)
T ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 22221 23444444443 345665 567788876 89999999888775
No 34
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.73 E-value=2.1e-16 Score=110.84 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=86.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC--chhhhcccccchHHHHHHHHHHhhcCCeEEc----
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG--WDDELECHVINEDLVCDELEDIMEQGGNIVD---- 83 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid---- 83 (176)
..|+|+|++||||||+++.|++.+|+++++.|.+......... +........+. +.-.+.++. +....+|+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~-~~e~~~~~~-~~~~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFR-ARESAALEA-VTAPSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHH-HHHHHHHHH-hcCCCeEEECCCC
Confidence 4689999999999999999999999999999988765421110 11111100010 001111211 222333443
Q ss_pred ----CCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCC--CccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCH
Q 030477 84 ----YHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYT--GAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTI 155 (176)
Q Consensus 84 ----~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~ 155 (176)
......+. ..+.+|||++|++++.+|+..|... ++........+.....++.+.+.|.. .++|+.+ .++
T Consensus 81 ~vl~~~~~~~l~--~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~~-~~~ 157 (171)
T PRK03731 81 IILTEENRHFMR--NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDAT-QPP 157 (171)
T ss_pred ccCCHHHHHHHH--hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcCC-CCH
Confidence 22222222 2467999999999999999876421 12121111112344455555556654 3444433 478
Q ss_pred HHHHHHHHHHHH
Q 030477 156 EDITRNIAILTD 167 (176)
Q Consensus 156 ~ev~~~i~~~~~ 167 (176)
+++.+.+..++.
T Consensus 158 e~v~~~i~~~l~ 169 (171)
T PRK03731 158 SQVVSEILSALA 169 (171)
T ss_pred HHHHHHHHHHHh
Confidence 888888776664
No 35
>PRK04040 adenylate kinase; Provisional
Probab=99.72 E-value=6.8e-16 Score=109.65 Aligned_cols=106 Identities=25% Similarity=0.384 Sum_probs=68.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCCCc---hhhhcccccchH-----HHHHHHHHHhhcC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHDGW---DDELECHVINED-----LVCDELEDIMEQG 78 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~l~~~i~~~~~~~ 78 (176)
+++|+|+|+|||||||+++.|++++ ++.+++.++++.......++ .++....-...+ .....++....++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~ 81 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG 81 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence 5789999999999999999999999 89999999987654322221 122222111111 1222222222334
Q ss_pred CeEEcCCCC--------CCCC-----CCcccEEEEEeCChHHHHHHHhh
Q 030477 79 GNIVDYHGC--------DFFP-----ERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 79 ~~vid~~~~--------~~~~-----~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
.+|+|.|.. ..++ ...++.+|++.++|+++.+|...
T Consensus 82 ~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 82 PVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred CEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhc
Confidence 588898652 1122 12578899999999999888774
No 36
>PRK01184 hypothetical protein; Provisional
Probab=99.72 E-value=6.6e-16 Score=109.57 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=91.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCCchhhhccc------ccchHHHHHHHHH-Hhh--
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDGWDDELECH------VINEDLVCDELED-IME-- 76 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~l~~~i~~-~~~-- 76 (176)
+++|+|+|+|||||||+++ +++++|+++++++++++.... .......+... .+....+...+.. +..
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKG 79 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcC
Confidence 4689999999999999998 678899999999998877531 11111111110 0111222222111 222
Q ss_pred cCCeEEcCC-CC-------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH-----HhcCC
Q 030477 77 QGGNIVDYH-GC-------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA-----KESYP 143 (176)
Q Consensus 77 ~~~~vid~~-~~-------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 143 (176)
+..+|+|.. .. ..++ ....+|+++||++++.+|+..|++...... .+.+....... .+.+.
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~--~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~----~~~~~~r~~~q~~~~~~~~~~ 153 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFP--EDFILIAIHAPPEVRFERLKKRGRSDDPKS----WEELEERDERELSWGIGEVIA 153 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCC--cccEEEEEECCHHHHHHHHHHcCCCCChhh----HHHHHHHHHHHhccCHHHHHH
Confidence 346777853 10 0122 134799999999999999998875321111 11222222111 11222
Q ss_pred C-CcEEEecCCCHHHHHHHHHHHHHHHHhhc
Q 030477 144 E-DIVLALKSDTIEDITRNIAILTDWVRNWQ 173 (176)
Q Consensus 144 ~-~~~i~~~~~s~~ev~~~i~~~~~~~~~~~ 173 (176)
. +.+|+ |+++.+++.+.+.++++.+...+
T Consensus 154 ~ad~vI~-N~~~~~~l~~~v~~~~~~~~~~~ 183 (184)
T PRK01184 154 LADYMIV-NDSTLEEFRARVRKLLERILRSR 183 (184)
T ss_pred hcCEEEe-CCCCHHHHHHHHHHHHHHHhccC
Confidence 2 45554 66689999999999988776543
No 37
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.72 E-value=2.6e-16 Score=112.39 Aligned_cols=103 Identities=30% Similarity=0.501 Sum_probs=73.7
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhc-----ccccchHHHHHHHHHHhh----cCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELE-----CHVINEDLVCDELEDIME----QGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~l~~~i~~~~~----~~~~ 80 (176)
.|+|+|+|||||||+|+.|++++|+.+++.+++++...... ..+.... ......+.+...+...+. ..++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 48999999999999999999999999999999988753221 1221111 112233445555555443 4689
Q ss_pred EEcCCCCCCCCCC---------------cccEEEEEeCChHHHHHHHhhcCCC
Q 030477 81 IVDYHGCDFFPER---------------WFDRVVVLQTENSVLYDRLTKRGYT 118 (176)
Q Consensus 81 vid~~~~~~~~~~---------------~~~~vi~l~~~~~~~~~R~~~r~~~ 118 (176)
|+| ++|+. .++.+|+|++|++++.+|+..|...
T Consensus 81 vld-----g~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 81 ILD-----GFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred EEe-----CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 998 33331 4678999999999999999988753
No 38
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.72 E-value=2.5e-16 Score=120.06 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=99.6
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC--CchhhhcccccchHHHHHHHHHHhh-cCCeE
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD--GWDDELECHVINEDLVCDELEDIME-QGGNI 81 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~v 81 (176)
.+.+...|+|+|++||||||+++.|++++|+++++.|..+....... .+........+. ..-.+.+..++. .+.+|
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr-~~e~~~l~~ll~~~~~~V 207 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYR-RLERRALERLIAEHEEMV 207 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHH-HHHHHHHHHHHhhCCCEE
Confidence 45678899999999999999999999999999999998766542110 000000100110 111122233232 23344
Q ss_pred EcCCCC--------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecC
Q 030477 82 VDYHGC--------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKS 152 (176)
Q Consensus 82 id~~~~--------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 152 (176)
+..... ..+.. ...+|||++|++++.+|+.+|+..++........+.+....+.+.+.|.. +.+++++.
T Consensus 208 I~~Ggg~v~~~~~~~~l~~--~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~~ 285 (309)
T PRK08154 208 LATGGGIVSEPATFDLLLS--HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDTSG 285 (309)
T ss_pred EECCCchhCCHHHHHHHHh--CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCC
Confidence 432110 01111 34699999999999999988764333232222234556666666666665 56677776
Q ss_pred CCHHHHHHHHHHHHHHH
Q 030477 153 DTIEDITRNIAILTDWV 169 (176)
Q Consensus 153 ~s~~ev~~~i~~~~~~~ 169 (176)
.+++++.+.|...+...
T Consensus 286 ~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 286 LTVAQSLARLRELVRPA 302 (309)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 79999999888877544
No 39
>PRK06762 hypothetical protein; Provisional
Probab=99.72 E-value=3.6e-16 Score=109.12 Aligned_cols=148 Identities=14% Similarity=-0.004 Sum_probs=91.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcC-CeEEcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQG-GNIVDYH 85 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~~vid~~ 85 (176)
+.+|+|+|+|||||||+|+.|++.+ ++.+++.|.+....... ... .. ....+.+.+.++..+..+ .+|+|..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~--~~~-~~--~~~~~~~~~~~~~~~~~g~~vild~~ 76 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRV--KDG-PG--NLSIDLIEQLVRYGLGHCEFVILEGI 76 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccc--cCC-CC--CcCHHHHHHHHHHHHhCCCEEEEchh
Confidence 4689999999999999999999998 56778877665432111 100 00 011233333333334333 4667753
Q ss_pred CCCC-----CC----C-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCH
Q 030477 86 GCDF-----FP----E-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTI 155 (176)
Q Consensus 86 ~~~~-----~~----~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 155 (176)
.... +. . ..+..+|||++|++++.+|..+|+..... ..+.+..+++.....+..+.++.+++.++
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 151 (166)
T PRK06762 77 LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEF-----GEDDMRRWWNPHDTLGVIGETIFTDNLSL 151 (166)
T ss_pred hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccC-----CHHHHHHHHhhcCCcCCCCeEEecCCCCH
Confidence 2110 11 0 11347899999999999999988753221 12345556665554444466777777799
Q ss_pred HHHHHHHHHHH
Q 030477 156 EDITRNIAILT 166 (176)
Q Consensus 156 ~ev~~~i~~~~ 166 (176)
+++.+.+...+
T Consensus 152 ~~v~~~i~~~~ 162 (166)
T PRK06762 152 KDIFDAILTDI 162 (166)
T ss_pred HHHHHHHHHHh
Confidence 98888877665
No 40
>PRK06217 hypothetical protein; Validated
Probab=99.72 E-value=3.4e-16 Score=110.98 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=70.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHH-HhhcCCeEEcCCCCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELED-IMEQGGNIVDYHGCD 88 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~vid~~~~~ 88 (176)
+.|+|+|+|||||||+|+.|++.+|+++++.|++.+.+.... +.... ..+.....+.. +..+.++|+|.....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~vi~G~~~~ 75 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP-FTTKR-----PPEERLRLLLEDLRPREGWVLSGSALG 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC-ccccC-----CHHHHHHHHHHHHhcCCCEEEEccHHH
Confidence 569999999999999999999999999999999887653211 11110 11122222222 334568899854322
Q ss_pred CCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 89 FFP--ERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 89 ~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
... ...++.+|||++|.+++.+|+..|..
T Consensus 76 ~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 76 WGDPLEPLFDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred HHHHHHhhCCEEEEEECCHHHHHHHHHcCcc
Confidence 211 12368899999999999999998864
No 41
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.72 E-value=2.6e-17 Score=133.72 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=104.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCCchhhhcccccc-hHHHHHH-HHH---Hh-hc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDGWDDELECHVIN-EDLVCDE-LED---IM-EQ 77 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~l~~~-i~~---~~-~~ 77 (176)
.+.+.|+|.|+|||||||+++.||+.+|++|+|+|+.+.+..- .+-+.+.....+.+ +..+++. ... ++ .+
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G 83 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG 83 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 4568999999999999999999999999999999998876532 11122222223331 2222222 211 11 34
Q ss_pred CCeEEcCCCCCCC----CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEec
Q 030477 78 GGNIVDYHGCDFF----PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALK 151 (176)
Q Consensus 78 ~~~vid~~~~~~~----~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~ 151 (176)
+|++++......+ .. ...+|||++|++++.+|+..+. .+|..... ..+.+.++++.+.+.|.. +..++++
T Consensus 84 GG~v~~~~n~~~L~~~~~~--~g~vv~L~~~~~~l~~Rl~~~~-~RPll~~~-~~~~~~~l~~~R~~~Y~~~Ad~~i~~~ 159 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAH--GGRVVYLDADPKEAMERANRGG-GRPMLNGD-ANKRWKKLFKQRDPVFRQVANVHVHTR 159 (542)
T ss_pred CchhCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHhCCC-CCCCCCCC-cHHHHHHHHHHHHHHHHhhCCEEEECC
Confidence 4545443333322 22 2479999999999999997433 34544322 235678888888888876 6777777
Q ss_pred CCCHHHHHHHHHHHHHH
Q 030477 152 SDTIEDITRNIAILTDW 168 (176)
Q Consensus 152 ~~s~~ev~~~i~~~~~~ 168 (176)
+.+++++.+.+.+.+..
T Consensus 160 ~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 160 GLTPQAAAKKLIDMVAE 176 (542)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 77999988888776643
No 42
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.71 E-value=1.1e-15 Score=107.83 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=54.7
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccchh---HHHHHHHHHHHHHhcCCCCcEEEecCC------CHHHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI---ECEIFQVLLEEAKESYPEDIVLALKSD------TIEDITRNIAI 164 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~------s~~ev~~~i~~ 164 (176)
.|+++|||+|+.+++.+|+.+||++-+....+. ..+.+...+..+...|..+.++.++.. ++++....+.+
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~ 205 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQ 205 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHH
Confidence 489999999999999999999998766333333 345677777777777876555555432 56666666666
Q ss_pred HHHHHHh
Q 030477 165 LTDWVRN 171 (176)
Q Consensus 165 ~~~~~~~ 171 (176)
+.+.+..
T Consensus 206 I~~~~~~ 212 (216)
T COG1428 206 ILAKLKL 212 (216)
T ss_pred HHHHHhh
Confidence 6555543
No 43
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.71 E-value=9.2e-16 Score=108.56 Aligned_cols=158 Identities=19% Similarity=0.256 Sum_probs=94.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---C--Cchh-------------hh---ccccc-ch-
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---D--GWDD-------------EL---ECHVI-NE- 64 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~--~~~~-------------~~---~~~~~-~~- 64 (176)
..+.|.|-||+||||||+|+.||++||+.|++.+.+.|-.... . ++.+ .+ ..+++ .+
T Consensus 3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred CceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 3488999999999999999999999999999998876654210 0 0000 00 01111 00
Q ss_pred ------------------------HHHHHHHHHHhhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 65 ------------------------DLVCDELEDIMEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 65 ------------------------~~l~~~i~~~~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+.+.+..+.+... +++|+|+.... .||. .++-|||+++++++.+|--+...
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~Pd--A~lKiFLtAS~e~RA~RR~~q~~ 160 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPD--AELKIFLTASPEERAERRYKQLQ 160 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceECCC--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 1244444445555 67999976543 5665 57899999999999776543332
Q ss_pred CCccc--cchhHHHHHHHHHHHH-H--hcCCC---CcEEEecCCCHHHHHHHHHHHHH
Q 030477 118 TGAKL--TNNIECEIFQVLLEEA-K--ESYPE---DIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 118 ~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~---~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
..... .+....+...+=.... + .++.+ ...+++++.|.+||.+.+..+++
T Consensus 161 ~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 161 AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 22211 1222222111111111 1 12222 36677777799999999888876
No 44
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.70 E-value=1.5e-16 Score=109.61 Aligned_cols=141 Identities=23% Similarity=0.275 Sum_probs=84.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHH----HHHHHhhcCCeEEcCCC
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD----ELEDIMEQGGNIVDYHG 86 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~i~~~~~~~~~vid~~~ 86 (176)
.|+|+|+|||||||+++.|++.+|+++++.|.++...... ...+-... ..++.+.. .+..+....++|++...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~-~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~vi~~g~ 77 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM-SIPEIFAE--EGEEGFRELEREVLLLLLTKENAVIATGG 77 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC-CHHHHHHH--HCHHHHHHHHHHHHHHHhccCCcEEECCC
Confidence 3899999999999999999999999999999887654321 11110000 01111111 22223334455554321
Q ss_pred CCCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHH
Q 030477 87 CDFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIE 156 (176)
Q Consensus 87 ~~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ 156 (176)
...+.. .....+|||++|++++.+|+..|.. ++...... .+.+...++.+.+.|.. +.++++++.+++
T Consensus 78 ~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~-r~~~~~~~-~~~~~~~~~~r~~~Y~~~ad~~i~~~~~~~~ 153 (154)
T cd00464 78 GAVLREENRRLLLENGIVVWLDASPEELLERLARDKT-RPLLQDED-PERLRELLEEREPLYREVADLTIDTDELSPE 153 (154)
T ss_pred CccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCC-CCCCCCCC-HHHHHHHHHHHHHHHHHhCcEEEECCCCCCC
Confidence 111111 1245799999999999999988762 23332221 14566666777776655 677777776654
No 45
>PRK08118 topology modulation protein; Reviewed
Probab=99.70 E-value=1.4e-16 Score=111.26 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=72.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDF 89 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~ 89 (176)
+.|+|+|+|||||||+|+.|++.+|+++++.|++.+.+.- .. ...+.+...++.++...++|+|......
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w-~~---------~~~~~~~~~~~~~~~~~~wVidG~~~~~ 71 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNW-EG---------VPKEEQITVQNELVKEDEWIIDGNYGGT 71 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCC-cC---------CCHHHHHHHHHHHhcCCCEEEeCCcchH
Confidence 5799999999999999999999999999999999875431 11 1123344455555666789999754332
Q ss_pred CCC--CcccEEEEEeCChHHHHHHHhhc
Q 030477 90 FPE--RWFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 90 ~~~--~~~~~vi~l~~~~~~~~~R~~~r 115 (176)
++. ..+|.+|||++|.+++..|+.+|
T Consensus 72 ~~~~l~~~d~vi~Ld~p~~~~~~R~~~R 99 (167)
T PRK08118 72 MDIRLNAADTIIFLDIPRTICLYRAFKR 99 (167)
T ss_pred HHHHHHhCCEEEEEeCCHHHHHHHHHHH
Confidence 221 23789999999999999998877
No 46
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.69 E-value=1.3e-16 Score=127.88 Aligned_cols=145 Identities=20% Similarity=0.316 Sum_probs=95.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC--C-chhhhccccc-ch-HHHHHHHHH---Hh-hcCCeE
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD--G-WDDELECHVI-NE-DLVCDELED---IM-EQGGNI 81 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-~~-~~l~~~i~~---~~-~~~~~v 81 (176)
.|+|+|+|||||||+++.|++++|++++++|+++.+..... . +......++. .+ ..+.+.... ++ +++++|
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv 81 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVV 81 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCccc
Confidence 59999999999999999999999999999999886642111 0 1111111221 11 222222211 11 445677
Q ss_pred EcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHH
Q 030477 82 VDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRN 161 (176)
Q Consensus 82 id~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~ 161 (176)
++....+.+.. ..+|||++|++++.+|+..+++ +..... .+.+.++++.+.+.|..-..+++++.+++++...
T Consensus 82 ~~~~~r~~l~~---~~vI~L~as~e~l~~Rl~~~~R--PLl~~~--~e~l~~L~~~R~~lY~~~~~IDt~~~s~~e~~~~ 154 (488)
T PRK13951 82 IDPENRELLKK---EKTLFLYAPPEVLMERVTTENR--PLLREG--KERIREIWERRKQFYTEFRGIDTSKLNEWETTAL 154 (488)
T ss_pred cChHHHHHHhc---CeEEEEECCHHHHHHHhccCCC--CCcccc--HHHHHHHHHHHHHHHhcccEEECCCCCHHHHHHH
Confidence 77655555543 3589999999999999986643 433221 2356678888888888756788887788765554
Q ss_pred H
Q 030477 162 I 162 (176)
Q Consensus 162 i 162 (176)
+
T Consensus 155 i 155 (488)
T PRK13951 155 V 155 (488)
T ss_pred H
Confidence 4
No 47
>PRK13973 thymidylate kinase; Provisional
Probab=99.69 E-value=6.2e-15 Score=106.90 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=93.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh--------hHHHhhcccCC---Cchhhhcccccc---hHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINI--------GELVREKNLHD---GWDDELECHVIN---EDLVCDE 70 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~--------~~~~~~~~~~~---~~~~~~~~~~~~---~~~l~~~ 70 (176)
++++|+|.|++||||||+++.|++.+ |..++.. ++.++...... .++......++. .+.+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 81 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV 81 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999 8887755 44454432211 122211112221 1233344
Q ss_pred HHHHhhcCCeEE-cCCC-----CCCCCC-----------------CcccEEEEEeCChHHHHHHHhhcCCCC--ccccc-
Q 030477 71 LEDIMEQGGNIV-DYHG-----CDFFPE-----------------RWFDRVVVLQTENSVLYDRLTKRGYTG--AKLTN- 124 (176)
Q Consensus 71 i~~~~~~~~~vi-d~~~-----~~~~~~-----------------~~~~~vi~l~~~~~~~~~R~~~r~~~~--~~~~~- 124 (176)
+...+..+.+|| |... .+..+. ..|++++||++|++++.+|+.+|+... .....
T Consensus 82 i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~ 161 (213)
T PRK13973 82 IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKE 161 (213)
T ss_pred HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhc
Confidence 554555555544 5211 111110 148999999999999999999886422 22221
Q ss_pred h-hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 125 N-IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 125 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
+ ...+.....+.+....+. ..++.+|+. +++++.+.|..++..+
T Consensus 162 ~~~~~~~~~~~y~~l~~~~~-~~~~~Ida~~~~e~V~~~I~~~i~~~ 207 (213)
T PRK13973 162 DLAFHEKRREAFLQIAAQEP-ERCVVIDATASPEAVAAEIWAAVDQR 207 (213)
T ss_pred hHHHHHHHHHHHHHHHHhCC-CcEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 1 111122222222222233 245556655 8999999999988654
No 48
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.67 E-value=2.5e-17 Score=114.17 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=84.6
Q ss_pred CCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhcccccchHHHHHHHHHHhhcCCeEEcC--------CC
Q 030477 18 PGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVINEDLVCDELEDIMEQGGNIVDY--------HG 86 (176)
Q Consensus 18 ~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~--------~~ 86 (176)
|||||||+++.||+.||++|+|.|+.+...... +.+.......+. ..-.+.+..+....+.||.. ..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr--~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~ 78 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFR--ELESEALRELLKENNCVIACGGGIVLKEEN 78 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHH--HHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHH--HHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence 799999999999999999999999988665321 111111111111 11122233333333444432 11
Q ss_pred CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHHHHHHHHHH
Q 030477 87 CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDITRNIAI 164 (176)
Q Consensus 87 ~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ev~~~i~~ 164 (176)
.+.+. ....+|||+++++++.+|+..+.. +|..............+..+.+.|.. +.+++++..+++++.+.|.+
T Consensus 79 ~~~L~--~~g~vI~L~~~~~~l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~~~~~~~~i~~~i~~ 155 (158)
T PF01202_consen 79 RELLK--ENGLVIYLDADPEELAERLRARDN-RPLLKGKMEHEEILELLFEREPLYEQAADIVVDTDGSPPEEIAEEILE 155 (158)
T ss_dssp HHHHH--HHSEEEEEE--HHHHHHHHHHHCT-SGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEETSSCHHHHHHHHHHH
T ss_pred HHHHH--hCCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeCCCCCHHHHHHHHHH
Confidence 22222 145799999999999999987765 45555444322233333366667766 45666665566888777776
Q ss_pred HH
Q 030477 165 LT 166 (176)
Q Consensus 165 ~~ 166 (176)
.+
T Consensus 156 ~l 157 (158)
T PF01202_consen 156 FL 157 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 49
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.66 E-value=3.5e-15 Score=109.56 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=91.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC---------Cchh------------hhcccccchHH--
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD---------GWDD------------ELECHVINEDL-- 66 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~~~~~-- 66 (176)
.+|.|||.+||||||+++.|.+++|++++|+|.+.++..... .|+. .....++....
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 579999999999999999998889999999999877642100 1111 01111121111
Q ss_pred ----------HHHHHHHHh--------------hc-CCeEEcCCCC-C-CCCCCcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477 67 ----------VCDELEDIM--------------EQ-GGNIVDYHGC-D-FFPERWFDRVVVLQTENSVLYDRLTKRGYTG 119 (176)
Q Consensus 67 ----------l~~~i~~~~--------------~~-~~~vid~~~~-~-~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~ 119 (176)
+...+...+ .+ ..+|+|.... + .+....+|.+|++.||.+++.+|+.+|+.
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g-- 159 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG-- 159 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC--
Confidence 111111111 11 2456675431 1 11122368999999999999999998852
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCcEEEecC--CCHHHHHHHHHHHHHHHHhhc
Q 030477 120 AKLTNNIECEIFQVLLEEAKESYPEDIVLALKS--DTIEDITRNIAILTDWVRNWQ 173 (176)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~s~~ev~~~i~~~~~~~~~~~ 173 (176)
...+.... +..............+.+ ..|+ ++.+++...+..+++++++..
T Consensus 160 -~s~eea~~-Ri~~Q~~~~ek~~~aD~V-I~N~~~g~~~~L~~~v~~~~~~~~~~~ 212 (244)
T PTZ00451 160 -FSKEEALQ-RIGSQMPLEEKRRLADYI-IENDSADDLDELRGSVCDCVAWMSRQS 212 (244)
T ss_pred -CCHHHHHH-HHHhCCCHHHHHHhCCEE-EECCCCCCHHHHHHHHHHHHHHHHhhC
Confidence 11112211 222221111111112344 4556 689999999999998877543
No 50
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.66 E-value=4.8e-15 Score=118.71 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=99.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCC--chh--h-----------h-------ccccc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDG--WDD--E-----------L-------ECHVI 62 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~--~~~--~-----------~-------~~~~~ 62 (176)
++.+|.|.||+||||||+++.|++++|+.+++.+.+.+.... ... +.. . . ..+++
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~ 362 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI 362 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence 678999999999999999999999999999998888766310 000 000 0 0 00000
Q ss_pred ----------ch----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhh
Q 030477 63 ----------NE----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 63 ----------~~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
.+ +.+.+..+++...+++|+|+.+.. .+|. .++-|||++|++++.+|...
T Consensus 363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~P~--AdlKIfL~As~evRa~RR~~ 440 (512)
T PRK13477 363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPD--AELKIFLTASVEERARRRAL 440 (512)
T ss_pred CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEcCC--CCEEEEEECCHHHHHHHHHh
Confidence 00 123334444455678999976533 4555 68899999999999998654
Q ss_pred cCCCCccccchhHHHHHHHHHHHHH---------hcCCC--CcEEEecCCCHHHHHHHHHHHHHH
Q 030477 115 RGYTGAKLTNNIECEIFQVLLEEAK---------ESYPE--DIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
+...++....+. +.+...+.++. +.|.. ..++++++.+++++.+.|...++.
T Consensus 441 ~l~~Rpll~~~~--e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 441 DLQAQGFPVIDL--EQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred hhhhCCCccCCH--HHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 422222211111 22333334444 55655 366777777999999888887754
No 51
>PLN02842 nucleotide kinase
Probab=99.66 E-value=5.9e-15 Score=117.40 Aligned_cols=151 Identities=19% Similarity=0.352 Sum_probs=97.2
Q ss_pred EEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHHHh-----hcCCeE
Q 030477 13 LVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELEDIM-----EQGGNI 81 (176)
Q Consensus 13 ~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~~~-----~~~~~v 81 (176)
+|.|+|||||||+|+.|++++|+.+++.+++++.... ....+.....++ ...+.+...+.+.+ ...++|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 4899999999999999999999999999999876532 222232222221 23344455554433 346799
Q ss_pred EcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCC-----------------------ccccchh
Q 030477 82 VDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTG-----------------------AKLTNNI 126 (176)
Q Consensus 82 id~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~-----------------------~~~~~~~ 126 (176)
+| ++|+. .++.+|+|++|++++.+|+..|.... .+..++.
T Consensus 81 LD-----GfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~e 155 (505)
T PLN02842 81 LD-----GYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTE 155 (505)
T ss_pred Ee-----CCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCH
Confidence 98 44442 37899999999999999998774211 0111111
Q ss_pred --HHHHHHHHHHHHH---hcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 127 --ECEIFQVLLEEAK---ESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 127 --~~~~~~~~~~~~~---~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
-..++..+..... ..|. ..++.+++. ++++|.+.+..+++.+
T Consensus 156 E~IkkRL~~Y~~~t~pIl~~Y~-~rl~~IDAsqs~EeVfeeI~~iL~~~ 203 (505)
T PLN02842 156 EKVKARLQIYKKNAEAILSTYS-DIMVKIDGNRPKEVVFEEISSLLSQI 203 (505)
T ss_pred HHHHHHHHHHHHHhhhHHHhcC-cEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 1234444444433 2343 355667765 8999999999888644
No 52
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.65 E-value=9.7e-15 Score=104.38 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=85.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-C--------Cchhh-------------hcccccchHH-
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-D--------GWDDE-------------LECHVINEDL- 66 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~--------~~~~~-------------~~~~~~~~~~- 66 (176)
++|.|+|++||||||+++.|++.+|++++++|++.+..... . .++.. ....++....
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 57999999999999999999998899999999987764211 0 11110 1111121111
Q ss_pred -----------HHHHHHHHhh----cCCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHH
Q 030477 67 -----------VCDELEDIME----QGGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129 (176)
Q Consensus 67 -----------l~~~i~~~~~----~~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~ 129 (176)
+.+.+...+. ...+++|.... ..+. ..+|.+|+++||.+++.+|+.+|+. ...+... .
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~-~~~D~ii~V~a~~e~r~~Rl~~R~g---~s~e~~~-~ 156 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLT-DLCSEIWVVDCSPEQQLQRLIKRDG---LTEEEAE-A 156 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchH-hCCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-H
Confidence 1122222121 12345564321 1121 1368899999999999999998852 1111111 1
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHH
Q 030477 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
+...... ..+.-....++..|+++.+++.+.+.+++.
T Consensus 157 ri~~Q~~-~~~k~~~aD~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 157 RINAQWP-LEEKVKLADVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred HHHhCCC-HHHHHhhCCEEEECCCCHHHHHHHHHHHHh
Confidence 2211111 111111123344566689999999988764
No 53
>PRK08233 hypothetical protein; Provisional
Probab=99.65 E-value=3.2e-15 Score=105.67 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=84.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-CeEeehhHHHhhccc--CCCchhhhccc-ccchHHHHHHHHHHhhcC--Ce-
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVREKNL--HDGWDDELECH-VINEDLVCDELEDIMEQG--GN- 80 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~~~i~~~~~~~--~~- 80 (176)
+..+|+|+|+|||||||+|+.|++.++ ..++..|........ ...+......+ .++.+.+.+.+....... .+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 81 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI 81 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence 458999999999999999999999986 333333332111100 00111100111 122345555665555443 44
Q ss_pred EEcCCCCCCCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH-------hcCCCCcEEEec
Q 030477 81 IVDYHGCDFFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK-------ESYPEDIVLALK 151 (176)
Q Consensus 81 vid~~~~~~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~ 151 (176)
++|+......+. ..++.+|||++|++++.+|..+|.+..... +... ..+..++.... ..+.....+.++
T Consensus 82 ivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~-~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~vId 159 (182)
T PRK08233 82 IVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTG-NEIH-NDLKHYLNYARPLYLEALHTVKPNADIVLD 159 (182)
T ss_pred EEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccc-cchh-hHHHHHHHHHHHHHHHHhhcCccCCeEEEc
Confidence 446543222221 247899999999999999988776432111 1111 11222222222 222222334455
Q ss_pred CC-CHHHHHHHHHHHHH
Q 030477 152 SD-TIEDITRNIAILTD 167 (176)
Q Consensus 152 ~~-s~~ev~~~i~~~~~ 167 (176)
+. +.+++.+.+..++.
T Consensus 160 ~~~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 160 GALSVEEIINQIEEELY 176 (182)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 44 78888888888765
No 54
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.65 E-value=4e-15 Score=106.39 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=85.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---------CCchhh------------hcccccchHH--
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---------DGWDDE------------LECHVINEDL-- 66 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~-- 66 (176)
.+|+|+|++||||||+++.|++ +|++++++|.+.+..... ..++.. +...++....
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5899999999999999999988 999999999987765211 011111 1111121111
Q ss_pred ----------HHHHHHHHhhc----CCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477 67 ----------VCDELEDIMEQ----GGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI 130 (176)
Q Consensus 67 ----------l~~~i~~~~~~----~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~ 130 (176)
+.+.+...+.. .-++++.... ..+. ..+|.+|+++||++++.+|+.+|+. ...+.. ..+
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~-~~~D~vi~V~a~~e~~~~Rl~~R~~---~s~e~~-~~r 156 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLE-KLVDRVLVVDAPPETQLERLMARDG---LSEEEA-EAI 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCch-hhCCeEEEEECCHHHHHHHHHHcCC---CCHHHH-HHH
Confidence 11222222211 3356664321 1221 2368999999999999999998852 111111 112
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHH
Q 030477 131 FQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
+..+..........+.+| .|+++.+++.+++..+++.
T Consensus 157 i~~Q~~~~~~~~~ad~vI-~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 157 IASQMPREEKLARADDVI-DNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHhCCHHHHHHhCCEEE-ECCCCHHHHHHHHHHHHHh
Confidence 222111111111123444 3445899999988887653
No 55
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.64 E-value=6.9e-15 Score=105.31 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=92.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--------CCchhh-----------hcccccchH---
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--------DGWDDE-----------LECHVINED--- 65 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~--- 65 (176)
.+..|.|+|++||||||+++.|++++|++++++|.+.+..... ..++.. ....++...
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 4578999999999999999999988999999999887665211 111111 111112111
Q ss_pred ---------HHHHHHHHHhh--c-CCeEEcCCCC--CCCC-CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477 66 ---------LVCDELEDIME--Q-GGNIVDYHGC--DFFP-ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI 130 (176)
Q Consensus 66 ---------~l~~~i~~~~~--~-~~~vid~~~~--~~~~-~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~ 130 (176)
.+.+.+...+. . ..+++|.... ..+. ...+|.++++.||.+++.+|+.+|+. ...+... .+
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~---~s~~~a~-~r 160 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDG---KNRQQAV-AF 160 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HH
Confidence 12222222221 1 2355665332 1111 12368899999999999999998853 1111111 12
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHHhh
Q 030477 131 FQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVRNW 172 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~~ 172 (176)
...+.......-..+.+|+ |++ +.+++.+.+.++++.+...
T Consensus 161 i~~Q~~~eek~~~aD~VI~-N~g~~~~~l~~~~~~~~~~~~~~ 202 (204)
T PRK14733 161 INLQISDKEREKIADFVID-NTELTDQELESKLITTINEITNL 202 (204)
T ss_pred HHhCCCHHHHHHhCCEEEE-CcCCCHHHHHHHHHHHHHHHHhc
Confidence 2222221111111245554 455 8999999999999887543
No 56
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.64 E-value=1.2e-14 Score=102.10 Aligned_cols=102 Identities=27% Similarity=0.501 Sum_probs=72.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcccc-----cchHHHHHHHHHHh----hcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECHV-----INEDLVCDELEDIM----EQGG 79 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~~~i~~~~----~~~~ 79 (176)
+.|+|.|+|||||||+|+.|+++++++++|.+++.+..... ...+.....++ ...+.+...+...+ +..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 36899999999999999999999999999999998876432 33333332222 22233333333333 2237
Q ss_pred eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcC
Q 030477 80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
+|+| .+|+. ..+.++.++++.+.+..|+..|.
T Consensus 81 ~I~d-----g~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 81 FILD-----GFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred EEEe-----CCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence 8888 55552 35789999999999999999775
No 57
>PRK13975 thymidylate kinase; Provisional
Probab=99.63 E-value=3.3e-14 Score=101.75 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=82.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeE--eehh----HHHhhcccCCCchhhhcccccchH--HHHHHHHHHhhcCCe
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRH--INIG----ELVREKNLHDGWDDELECHVINED--LVCDELEDIMEQGGN 80 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~i~~~~~~~~~ 80 (176)
+++|+|.|++||||||+++.|+++++..+ ...+ ..++............-..++..+ ..+..++..+....+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~~~v 81 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKKRDV 81 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 36999999999999999999999998533 2222 222221111111110000111111 112233333333456
Q ss_pred EEcCCC--------CCCCC----------CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh--
Q 030477 81 IVDYHG--------CDFFP----------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE-- 140 (176)
Q Consensus 81 vid~~~--------~~~~~----------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-- 140 (176)
+.|... ..... ...++++|||++|++++.+|+..|+. +........+.....+.+...
T Consensus 82 i~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~--~~~~~~~~~~~~~~~y~~~~~~~ 159 (196)
T PRK13975 82 VCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDK--EIFEKKEFLKKVQEKYLELANNE 159 (196)
T ss_pred EEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCc--cccchHHHHHHHHHHHHHHHhhc
Confidence 666210 00000 01478999999999999999998863 222221112233333433332
Q ss_pred cCC-CC--cEEEecCCCHHHHHHHHHHHHH
Q 030477 141 SYP-ED--IVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 141 ~~~-~~--~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
.|. .. .++++++.+++++.+.|...+.
T Consensus 160 ~~~~~~~~~~Id~~~~~~eev~~~I~~~i~ 189 (196)
T PRK13975 160 KFMPKYGFIVIDTTNKSIEEVFNEILNKIK 189 (196)
T ss_pred ccCCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 122 22 3444444589998888877664
No 58
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.63 E-value=4.7e-15 Score=101.98 Aligned_cols=96 Identities=30% Similarity=0.505 Sum_probs=67.0
Q ss_pred EECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh----hcCCeEEc
Q 030477 14 VTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM----EQGGNIVD 83 (176)
Q Consensus 14 l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~~~~vid 83 (176)
|.|||||||||+|+.|++++|+.+++.+++++..... ...+...... .+..+.+.+.+...+ ...++|+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 6899999999999999999999999999999876422 1222222111 223445555555432 34789999
Q ss_pred CCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhh
Q 030477 84 YHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 84 ~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~ 114 (176)
+||++ .++.+|+|++|.+++.+|+..
T Consensus 81 -----GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 81 -----GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp -----SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred -----eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 66664 367899999999999999986
No 59
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.7e-14 Score=96.13 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=89.3
Q ss_pred ECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-----CCCchhhhcccccchHHHHHHHHH----Hhhc-CCeEEcC
Q 030477 15 TGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-----HDGWDDELECHVINEDLVCDELED----IMEQ-GGNIVDY 84 (176)
Q Consensus 15 ~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~----~~~~-~~~vid~ 84 (176)
+|.+||||||++++||+++|+.|++.|++.-..++ ..++.++-+ -.+++.+.+ .... ...|+-.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR------~pWL~~l~~~~~~~~~~~~~~vi~C 74 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDR------WPWLEALGDAAASLAQKNKHVVIAC 74 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchh------hHHHHHHHHHHHHhhcCCCceEEec
Confidence 59999999999999999999999999987544332 222222111 234444444 2222 2234422
Q ss_pred -----CCCCCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHH
Q 030477 85 -----HGCDFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSD-TIED 157 (176)
Q Consensus 85 -----~~~~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~e 157 (176)
..++.++...++ .+|||+.+.+.+.+|+..|.. ..+. ...++.++...+++-.++.++.++.. ++++
T Consensus 75 SALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~g--HFM~----~~ll~SQfa~LE~P~~de~vi~idi~~~~e~ 148 (161)
T COG3265 75 SALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKG--HFMP----ASLLDSQFATLEEPGADEDVLTIDIDQPPEE 148 (161)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhccc--CCCC----HHHHHHHHHHhcCCCCCCCEEEeeCCCCHHH
Confidence 223344444444 489999999999999998874 2332 23566777777766665567777765 6777
Q ss_pred HHHHHHHHH
Q 030477 158 ITRNIAILT 166 (176)
Q Consensus 158 v~~~i~~~~ 166 (176)
+.+.+...+
T Consensus 149 vv~~~~~~l 157 (161)
T COG3265 149 VVAQALAWL 157 (161)
T ss_pred HHHHHHHHH
Confidence 766655544
No 60
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.62 E-value=1.9e-14 Score=101.38 Aligned_cols=151 Identities=15% Similarity=0.060 Sum_probs=83.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeE--eehhHHHhhcccCC-C----c--hh---hhccccc--chHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRH--INIGELVREKNLHD-G----W--DD---ELECHVI--NEDLVCDELED 73 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~--~~~~~~~~~~~~~~-~----~--~~---~~~~~~~--~~~~l~~~i~~ 73 (176)
++++|+|+|+|||||||+++.|++.++..+ ++.|++........ . . .. +...... .-..+...++.
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 80 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA 80 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence 357899999999999999999999886654 46666654332110 0 0 00 0000000 01233444444
Q ss_pred Hh-hcCCeEEcCCCC--CCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC
Q 030477 74 IM-EQGGNIVDYHGC--DFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE 144 (176)
Q Consensus 74 ~~-~~~~~vid~~~~--~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (176)
.+ .+..+|+|.... ..++. ...-..|+|.||.+++.+|+.+|+...+. . .........+.-..
T Consensus 81 ~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~~----~----~~~~~~~~~~~~~~ 152 (175)
T cd00227 81 MARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVPG----Q----ARKQARVVHAGVEY 152 (175)
T ss_pred HHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccch----H----HHHHHHHhcCCCcc
Confidence 44 445678885322 11111 01235799999999999999988742111 1 11111111111122
Q ss_pred CcEEEecCCCHHHHHHHHHHHH
Q 030477 145 DIVLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 145 ~~~i~~~~~s~~ev~~~i~~~~ 166 (176)
+.+++++..++++..+.+...+
T Consensus 153 dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 153 DLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred eEEEECCCCCHHHHHHHHHHhc
Confidence 5677776668887776665543
No 61
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.62 E-value=9e-15 Score=104.43 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=89.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---------CCCchh------------hhcccccchH--
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---------HDGWDD------------ELECHVINED-- 65 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~-- 65 (176)
+.+|.|||.+||||||+++.+++ +|++++++|++.++..- ...++. .....++...
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57899999999999999999988 99999999999884310 011110 1111122111
Q ss_pred ----------HHHHHHHHHh--hcC-CeEEcCCC-CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHH
Q 030477 66 ----------LVCDELEDIM--EQG-GNIVDYHG-CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIF 131 (176)
Q Consensus 66 ----------~l~~~i~~~~--~~~-~~vid~~~-~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~ 131 (176)
.+...+.... ... -+++|.+. .+.....+++.+|+++||+++..+|+.+|+. ...+.... +.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~---~~~e~~~~-~~ 156 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG---LDEEDAEA-RL 156 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCC---CCHHHHHH-HH
Confidence 0111111111 112 23445332 1111112267899999999999999999972 22112222 22
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477 132 QVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRN 171 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~ 171 (176)
...... .+.+.-..++..|+.+.+.+.+++.++++.+..
T Consensus 157 ~~Q~~~-~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 157 ASQRDL-EEKLALADVVIDNDGSIENLLEQIEKLLKELLG 195 (201)
T ss_pred HhcCCH-HHHHhhcCChhhcCCCHHHHHHHHHHHHHHHHh
Confidence 222222 222343334445556788888888888877654
No 62
>PRK08356 hypothetical protein; Provisional
Probab=99.62 E-value=5.4e-14 Score=100.67 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=86.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--CC--ch-h-hh------cccc---------cchHHH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--DG--WD-D-EL------ECHV---------INEDLV 67 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--~~--~~-~-~~------~~~~---------~~~~~l 67 (176)
.++|+|+|||||||||+|+.|+ ++|+++++.++..+...-. .. |. . .. ..++ +..+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 4679999999999999999996 5899999998854432100 00 00 0 00 0000 001222
Q ss_pred HHHHHHHh-hcCCeEEcCCCCCC-----CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc
Q 030477 68 CDELEDIM-EQGGNIVDYHGCDF-----FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES 141 (176)
Q Consensus 68 ~~~i~~~~-~~~~~vid~~~~~~-----~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (176)
.+.+.... ....+++|.- ... +.. ....+||+++|++++.+|+..|+...+..... .+.+..+.......
T Consensus 84 ~~~~~~~~~~~~~ividG~-r~~~q~~~l~~-~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~--~e~~~~~~~~~~~l 159 (195)
T PRK08356 84 IRLAVDKKRNCKNIAIDGV-RSRGEVEAIKR-MGGKVIYVEAKPEIRFERLRRRGAEKDKGIKS--FEDFLKFDEWEEKL 159 (195)
T ss_pred HHHHHHHhccCCeEEEcCc-CCHHHHHHHHh-cCCEEEEEECCHHHHHHHHHhcCCcccccccc--HHHHHHHHHHHHHh
Confidence 22222222 1235777732 111 111 12479999999999999999887643321111 11222222221111
Q ss_pred CC-------CCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477 142 YP-------EDIVLALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 142 ~~-------~~~~i~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
|. .+.+| +|+.+.+++.+.+..+++.+.
T Consensus 160 ~~~~~~~~~aD~vI-~N~~~~e~~~~~i~~~~~~~~ 194 (195)
T PRK08356 160 YHTTKLKDKADFVI-VNEGTLEELRKKVEEILRELS 194 (195)
T ss_pred hhhhhHHHhCcEEE-ECCCCHHHHHHHHHHHHHHhc
Confidence 11 13444 555699999999999887653
No 63
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=3.5e-14 Score=101.92 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=85.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-----C----Cchh------------hhcccccchHH--
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-----D----GWDD------------ELECHVINEDL-- 66 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-----~----~~~~------------~~~~~~~~~~~-- 66 (176)
.+|.|+|++||||||+++.|++ +|++++++|++.+..... . .++. .....++....
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5799999999999999999987 899999999876554211 0 1111 01112221111
Q ss_pred ----------HHHHHHHHh----hcC--CeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477 67 ----------VCDELEDIM----EQG--GNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC 128 (176)
Q Consensus 67 ----------l~~~i~~~~----~~~--~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~ 128 (176)
+.+.+...+ ..+ .++++.... ..+. ..+|.+||++||.+++.+|+..|+. ...+.. .
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~-~~~D~vi~V~a~~e~ri~Rl~~R~g---~s~e~~-~ 155 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLD-RKMDLVVVVDVDVEERVRRLVEKRG---LDEDDA-R 155 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCcc-ccCCeEEEEECCHHHHHHHHHHcCC---CCHHHH-H
Confidence 112222211 111 244443221 1221 1368999999999999999998741 111111 1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477 129 EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRN 171 (176)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~ 171 (176)
.++..+.......-..+.+ ..|+++.+++.+.+..+++.+.+
T Consensus 156 ~ri~~Q~~~~~k~~~ad~v-I~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 156 RRIAAQIPDDVRLKAADIV-VDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHHHhcCCHHHHHHhCCEE-EECcCCHHHHHHHHHHHHHHHHh
Confidence 1222222211111112333 34556899999999998877654
No 64
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.60 E-value=3.3e-15 Score=101.63 Aligned_cols=127 Identities=23% Similarity=0.288 Sum_probs=74.7
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh--hcccccchHHHHHHHHHHh-hcCCeEEcCCCC
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE--LECHVINEDLVCDELEDIM-EQGGNIVDYHGC 87 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~~~-~~~~~vid~~~~ 87 (176)
+|+++|+|||||||+++.|++.+++.+++.|++............. ....-...+.+...++..+ .+..+|+|....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~ 80 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNL 80 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcC
Confidence 5899999999999999999999999999999887654331111100 0000001123344454444 345678885432
Q ss_pred CCCCC----------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477 88 DFFPE----------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA 138 (176)
Q Consensus 88 ~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 138 (176)
..-.+ .....+|+|++|.+++.+|+..|+...+... ....+.+..+.+..
T Consensus 81 ~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~-~~~~~~~~~~~~~~ 140 (143)
T PF13671_consen 81 SREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRF-EVPEEVFDRMLARF 140 (143)
T ss_dssp SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccc-cCcHHHHHHHHHhh
Confidence 21100 1133689999999999999999887543322 23333455555443
No 65
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.60 E-value=3.4e-14 Score=98.84 Aligned_cols=147 Identities=17% Similarity=0.247 Sum_probs=81.2
Q ss_pred EEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcCC
Q 030477 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDYH 85 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~~ 85 (176)
|+|+|++||||||+++.|++.+|..+++.|++.... .....+........+ ..+.+.+...+. +..+|++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~Vi~~t 78 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWL--QNLNDASTAAAAKNKVGIITCS 78 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHH--HHHHHHHHHHHhcCCCEEEEec
Confidence 578999999999999999999999999988864221 111111111000000 122333333333 344566643
Q ss_pred CC-----CCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc-CCCCcEEEecCC-CHHH
Q 030477 86 GC-----DFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES-YPEDIVLALKSD-TIED 157 (176)
Q Consensus 86 ~~-----~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-s~~e 157 (176)
.. ..+....++ .++||++|++++.+|+..|... ... .+.+...+.....+ +.+..++.+|+. ++++
T Consensus 79 ~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~---~~~---~~~i~~~~~~~~~~~~~e~~~~~id~~~~~~~ 152 (163)
T TIGR01313 79 ALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGH---FMK---ADMLESQFAALEEPLADETDVLRVDIDQPLEG 152 (163)
T ss_pred ccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCC---CCC---HHHHHHHHHHhCCCCCCCCceEEEECCCCHHH
Confidence 21 111111222 4699999999999999988631 111 12344444433332 333344555544 6777
Q ss_pred HHHHHHHHH
Q 030477 158 ITRNIAILT 166 (176)
Q Consensus 158 v~~~i~~~~ 166 (176)
+.+.+..++
T Consensus 153 ~~~~~~~~~ 161 (163)
T TIGR01313 153 VEEDCIAVV 161 (163)
T ss_pred HHHHHHHHH
Confidence 777766553
No 66
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.60 E-value=1.9e-13 Score=98.07 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=89.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh--------hHHHhhcccC--CCchhhhcccccc---hHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINI--------GELVREKNLH--DGWDDELECHVIN---EDLVCDEL 71 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~~i 71 (176)
++++|+|.|+.||||||+++.|++.+ |+.++-. ++.++..... ..........++. .+.+.+.+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i 81 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI 81 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999987 5444421 2223332221 1122211111221 12234444
Q ss_pred HHHhhcCCeEE-cCCC-----CC----------------CCC-CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH-
Q 030477 72 EDIMEQGGNIV-DYHG-----CD----------------FFP-ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE- 127 (176)
Q Consensus 72 ~~~~~~~~~vi-d~~~-----~~----------------~~~-~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~- 127 (176)
...+..+.+|| |-.. .+ ..+ ...||+++||++|+++..+|+.+|+....+++....
T Consensus 82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~ 161 (208)
T COG0125 82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDE 161 (208)
T ss_pred HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHH
Confidence 44444455544 4210 00 111 014799999999999999999988754233332221
Q ss_pred -HHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 128 -CEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
.+.....+......+.. .++.+|+. +.++|.+.+..++..+
T Consensus 162 f~~kvr~~Y~~la~~~~~-r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 162 FLEKVREGYLELAAKFPE-RIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred HHHHHHHHHHHHHhhCCC-eEEEEECCCCHHHHHHHHHHHHHHh
Confidence 12222223333333332 35566665 7999999998888654
No 67
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.60 E-value=7.1e-14 Score=102.03 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=89.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--------CCCc---hh---h----h-------ccccc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--------HDGW---DD---E----L-------ECHVI 62 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--------~~~~---~~---~----~-------~~~~~ 62 (176)
++.+|.|.|++||||||+++.|++++|+++++.+.+.+.... .... .+ . + ..++.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLN 82 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEEC
Confidence 468999999999999999999999999999999997554210 0110 00 0 0 00000
Q ss_pred c-------------------------hHHHHHHHHHHhhcCCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhc
Q 030477 63 N-------------------------EDLVCDELEDIMEQGGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 63 ~-------------------------~~~l~~~i~~~~~~~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r 115 (176)
. .+.+......+...+++|++.... ..++. .++.|||++|.+++.+|...+
T Consensus 83 ~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~vl~~--a~~~ifl~a~~e~R~~Rr~~~ 160 (225)
T PRK00023 83 GEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTVVFPD--AELKIFLTASAEERAERRYKE 160 (225)
T ss_pred CcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheEEeCC--CCEEEEEECCHHHHHHHHHHH
Confidence 0 012333333344557889886542 24444 578999999999887765433
Q ss_pred CCCC--ccccchhHHHHHHHHHHHHH---hcCCC---CcEEEecCCCHHHHHHHHHHHHHH
Q 030477 116 GYTG--AKLTNNIECEIFQVLLEEAK---ESYPE---DIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 116 ~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
.... ....+.........-..... .++.. ..+++++..+.+++.+.|..+++.
T Consensus 161 ~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~ 221 (225)
T PRK00023 161 LQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVEE 221 (225)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 2111 11111111111111010001 11111 255556556999999999888753
No 68
>PLN02422 dephospho-CoA kinase
Probab=99.59 E-value=4e-14 Score=103.09 Aligned_cols=154 Identities=14% Similarity=0.190 Sum_probs=87.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---------CCCchhh------------hcccccchHH--
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---------HDGWDDE------------LECHVINEDL-- 66 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~-- 66 (176)
++|.|+|.+||||||+++.|+ ++|++++|+|++.+.... ...++.. ....++....
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 479999999999999999998 589999999998766421 0111111 1111221111
Q ss_pred ----------HHHHHHH----H-hhc-CCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477 67 ----------VCDELED----I-MEQ-GGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC 128 (176)
Q Consensus 67 ----------l~~~i~~----~-~~~-~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~ 128 (176)
+.+.+.. . ..+ ..+++|.... ..+. ..+|.+++++||++++.+|+.+|+. ...+...
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~-~~~D~vI~V~a~~e~ri~RL~~R~g---~s~eea~- 155 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMD-KWTKPVVVVWVDPETQLERLMARDG---LSEEQAR- 155 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchh-hhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-
Confidence 1111111 1 111 2455665431 1111 1368999999999999999999862 1111111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477 129 EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
.++....... +......++..|+++.+++...+.++++.+.
T Consensus 156 ~Ri~~Q~~~e-ek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 156 NRINAQMPLD-WKRSKADIVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHHHcCChh-HHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 1221111110 1112123444556689999999998887763
No 69
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.3e-13 Score=92.61 Aligned_cols=147 Identities=20% Similarity=0.294 Sum_probs=87.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCC--chhhhcccccchHHHHHHHHH-----HhhcC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDG--WDDELECHVINEDLVCDELED-----IMEQG 78 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~l~~~i~~-----~~~~~ 78 (176)
+-.|++.|++||||||++++|++++|+.|++.|++....+. .+. +.++-+ =.+++.+.. +..+.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR------~pWL~~i~~~~~~~l~~~q 85 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDR------WPWLKKIAVELRKALASGQ 85 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccc------cHHHHHHHHHHHHHhhcCC
Confidence 34899999999999999999999999999999987543321 111 111100 012222221 22445
Q ss_pred CeEEcCCC-----CC--------CCCCC---cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC
Q 030477 79 GNIVDYHG-----CD--------FFPER---WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY 142 (176)
Q Consensus 79 ~~vid~~~-----~~--------~~~~~---~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (176)
++|+.... ++ +-+.. ..-.+|+|.++.+++.+|+..|.. ..+. .+.++.+++..+.+-
T Consensus 86 ~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g--HFMp----~~lleSQf~~LE~p~ 159 (191)
T KOG3354|consen 86 GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG--HFMP----ADLLESQFATLEAPD 159 (191)
T ss_pred eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc--ccCC----HHHHHHHHHhccCCC
Confidence 66663211 01 11111 122589999999999999998864 2222 234666666655433
Q ss_pred CC-CcEEEe--cCCCHHHHHHHHHHHHH
Q 030477 143 PE-DIVLAL--KSDTIEDITRNIAILTD 167 (176)
Q Consensus 143 ~~-~~~i~~--~~~s~~ev~~~i~~~~~ 167 (176)
.+ ..++.+ ++.+++++.+.|.+.+.
T Consensus 160 ~~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 160 ADEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred CCccceEEEeeccCCHHHHHHHHHHHHH
Confidence 33 344444 44478777777776654
No 70
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.59 E-value=4.7e-14 Score=102.34 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=70.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc---------cC---------CCchhhh---c----------
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN---------LH---------DGWDDEL---E---------- 58 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~---------~~---------~~~~~~~---~---------- 58 (176)
++|.|.||+||||||+++.|++++|+++++.+++.+... .. ..++..+ +
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGE 82 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCc
Confidence 579999999999999999999999999999998765431 00 0000000 0
Q ss_pred ---ccccch----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcC
Q 030477 59 ---CHVINE----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 59 ---~~~~~~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
..+..+ ..+.+.++++...+++|++..... .++. .++.|||++|+++..+|...+.
T Consensus 83 ~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~~~v~~~--a~~~ifl~a~~~~Ra~Rr~~~~ 159 (217)
T TIGR00017 83 DVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIGTVVFPN--AEVKIFLDASVEERAKRRYKQL 159 (217)
T ss_pred chHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcceEEeCC--CCEEEEEECCHHHHHHHHHHHH
Confidence 001110 234445555556678999876533 3443 6789999999999988887664
No 71
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.59 E-value=9.6e-15 Score=99.68 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCCC
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFF 90 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~~ 90 (176)
+|+|+|+|||||||+|+.|++++|+++++.+.+..... ............-...+.+.+..+...+++|+|......+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~ 78 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV--GKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV 78 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH--HHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE
Confidence 58999999999999999999999999999884322110 0000000000001122333333344556799987654333
Q ss_pred CCCcccEEEEEeCChHHHHHHHhhc
Q 030477 91 PERWFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 91 ~~~~~~~vi~l~~~~~~~~~R~~~r 115 (176)
.....+.+|||++|++.+.+|+.+|
T Consensus 79 ~~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 79 VFPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EcCCCCEEEEEECCHHHHHHHHHHH
Confidence 2223678999999999999999884
No 72
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=6.9e-14 Score=99.99 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=85.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---------CCchhh------------hcccccchH----
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---------DGWDDE------------LECHVINED---- 65 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~---- 65 (176)
+|.|+|++||||||+++.|++ +|+.++++|++.+..... ..|+.. ....++...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 488999999999999999965 799999999987664211 111111 111112111
Q ss_pred --------HHHHHHHHHh---hcC-CeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHH
Q 030477 66 --------LVCDELEDIM---EQG-GNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIF 131 (176)
Q Consensus 66 --------~l~~~i~~~~---~~~-~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~ 131 (176)
.+.+.+...+ ..+ -+++|.... ..+. ..+|.+|++++|++++.+|+.+|+. ...+... .++
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~-~~~D~vi~V~a~~e~r~~RL~~R~g---~s~e~a~-~ri 154 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAY-TLCDATVTVDSDPEESILRTISRDG---MKKEDVL-ARI 154 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCch-hhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HHH
Confidence 1111222211 122 345564321 0111 2368999999999999999998853 1111111 112
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477 132 QVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
..... ..+.-....++..|+++.+++...+.++.+.+.
T Consensus 155 ~~Q~~-~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 155 ASQLP-ITEKLKRADYIVRNDGNREGLKEECKILYSTLL 192 (196)
T ss_pred HHcCC-HHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 11111 111111123444566689999999998886553
No 73
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=1.3e-13 Score=99.57 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=87.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-----C----Cchh----------------hhccccc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-----D----GWDD----------------ELECHVI 62 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-----~----~~~~----------------~~~~~~~ 62 (176)
.+.+|.|+|++||||||+++.|++ +|++++++|.+.+..... . .++. .....++
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 456788999999999999999976 999999999776543110 0 0010 1111222
Q ss_pred chHH------------HHHHHHH----Hhhc-CC-eEEcCCCC-CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCcccc
Q 030477 63 NEDL------------VCDELED----IMEQ-GG-NIVDYHGC-DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLT 123 (176)
Q Consensus 63 ~~~~------------l~~~i~~----~~~~-~~-~vid~~~~-~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~ 123 (176)
.... +...++. .... .. ++++.... +.-....++.+|++.||.+++.+|+.+|+.. ..
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~---s~ 159 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMG---SR 159 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCC---CH
Confidence 1111 1112222 1112 13 44454321 1111123689999999999999999999742 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477 124 NNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
+... .++..+....... ....++..|+++.+++.+.+..+++.+.
T Consensus 160 e~~~-~Ri~~q~~~~~~~-~~ad~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 160 EEIR-RRIAAQWPQEKLI-ERADYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred HHHH-HHHHHcCChHHHH-HhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 1111 1222221111111 1122334555689999999999987664
No 74
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.58 E-value=3.3e-15 Score=98.84 Aligned_cols=102 Identities=28% Similarity=0.364 Sum_probs=59.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh-cccccchHHHHHHHHHHh---hcCCeEEcCCC
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL-ECHVINEDLVCDELEDIM---EQGGNIVDYHG 86 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~---~~~~~vid~~~ 86 (176)
+|+|+|+|||||||+|+.|++++|+++++.|++++..... ...... .......+.+.+.+.... ....+|+|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~~ 79 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI-ERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGSY 79 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC-HGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECCS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc-ccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCCC
Confidence 5899999999999999999999999999999954333222 111111 111112233344444432 23458888632
Q ss_pred CC--CCCCCcccEEEEEeCChHHHHHHHh
Q 030477 87 CD--FFPERWFDRVVVLQTENSVLYDRLT 113 (176)
Q Consensus 87 ~~--~~~~~~~~~vi~l~~~~~~~~~R~~ 113 (176)
.. .+.....+.+||+.++.++...|+.
T Consensus 80 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~ 108 (121)
T PF13207_consen 80 ESEMEIRLPEFDHVIYLDAPDEECRERRL 108 (121)
T ss_dssp CHCCHSCCHHGGCEEEEEEEEHHHHHHHH
T ss_pred ccchhhhhhcCCEEEEEECCCHHHHHHHH
Confidence 11 1122234578999988874444443
No 75
>PRK07261 topology modulation protein; Provisional
Probab=99.56 E-value=1.3e-14 Score=101.70 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=71.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDF 89 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~ 89 (176)
+.|+|+|+|||||||+++.|++.+|.++++.|.+.+.+. +.. .+.+.+...+...+..+.+|+|++....
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~wIidg~~~~~ 70 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----WQE------RDDDDMIADISNFLLKHDWIIDGNYSWC 70 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----ccc------CCHHHHHHHHHHHHhCCCEEEcCcchhh
Confidence 368999999999999999999999999999888765332 110 1224456666666766779999876542
Q ss_pred C-CC--CcccEEEEEeCChHHHHHHHhhc
Q 030477 90 F-PE--RWFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 90 ~-~~--~~~~~vi~l~~~~~~~~~R~~~r 115 (176)
. +. ...|.+|+|++|..++..|+.+|
T Consensus 71 ~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 71 LYEERMQEADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred hHHHHHHHCCEEEEEcCCHHHHHHHHHHH
Confidence 2 11 14688999999999999999777
No 76
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.56 E-value=9.2e-14 Score=98.94 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=80.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---------CCchhh------------hcccccch-H---
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---------DGWDDE------------LECHVINE-D--- 65 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~-~--- 65 (176)
+|+|+|.+||||||+++.|++..|++++++|++.+..... ..++.. ....++.. .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 4899999999999999999987779999999987663211 111111 11111211 1
Q ss_pred ------------HHHHHHHHHhhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477 66 ------------LVCDELEDIMEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI 130 (176)
Q Consensus 66 ------------~l~~~i~~~~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~ 130 (176)
.+.+.+...... ..++++.+... .+. ..++.++++++|.+++.+|+..|+. ...+... .+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~-~~~D~vv~V~~~~~~~~~Rl~~R~~---~s~~~~~-~r 155 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLR-SLCDRVIVVDVSPQLQLERLMQRDN---LTEEEVQ-KR 155 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcH-HhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HH
Confidence 111222222122 24566654321 121 2367899999999999999998862 1111111 12
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHH
Q 030477 131 FQVLLEEAKESYPEDIVLALKSDTIEDITRNIA 163 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~ 163 (176)
+.............+.+| .|+++.+++...+.
T Consensus 156 ~~~q~~~~~~~~~ad~vI-~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 156 LASQMDIEERLARADDVI-DNSATLADLVKQLE 187 (188)
T ss_pred HHhcCCHHHHHHhCCEEE-ECCCCHHHHHHHHh
Confidence 222211111111223444 55568888877664
No 77
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.55 E-value=4.2e-13 Score=96.58 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=44.7
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccc-h-hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTN-N-IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
.++.+|||++|++++.+|+.+|+.. ..... . .........+......+. ..++.+|+. +++++.+.|.+++..+
T Consensus 127 ~pd~~i~l~~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 127 RPDLTLYLDVPPEVGLARIRARGEL-DRIEQEGLDFFERVREGYLELAEKEP-ERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCc-chhhhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999988732 11111 1 111222222333222222 234555554 8899999998888654
No 78
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.54 E-value=2.9e-13 Score=96.77 Aligned_cols=153 Identities=22% Similarity=0.271 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC---CeEee--------hhHHHhhcccCC---Cchhhhcccccc---hHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ---LRHIN--------IGELVREKNLHD---GWDDELECHVIN---EDLVCDE 70 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~---~~~l~~~ 70 (176)
++++|+|.|++||||||+++.|++.++ ..++- .++.++...... .+.......++. .+.+.+.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~ 81 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK 81 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999884 33321 122222221110 011000011111 1223333
Q ss_pred HHHHhhcCC-eEEcCCC-----CCC----------------CCCCcccEEEEEeCChHHHHHHHhhcCCCCcc-ccchhH
Q 030477 71 LEDIMEQGG-NIVDYHG-----CDF----------------FPERWFDRVVVLQTENSVLYDRLTKRGYTGAK-LTNNIE 127 (176)
Q Consensus 71 i~~~~~~~~-~vid~~~-----~~~----------------~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~-~~~~~~ 127 (176)
+...+..+. +|+|... ... ++...++++|||++|++++.+|+..|+..... ......
T Consensus 82 i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~~ 161 (195)
T TIGR00041 82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLDF 161 (195)
T ss_pred HHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHHH
Confidence 443343443 4556210 000 11112789999999999999999988642111 111111
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHH
Q 030477 128 CEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNI 162 (176)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i 162 (176)
.+.....+.+.... ...++.+++. +++++.+.|
T Consensus 162 ~~~~~~~y~~~~~~--~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 162 FEKVRQRYLELADK--EKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHHHHHHHHHHHcC--CCcEEEEeCCCCHHHHHhhC
Confidence 12222222222222 2344555554 788877653
No 79
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.54 E-value=7.1e-13 Score=96.52 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=38.6
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH-hcCCC-CcEEEecCC
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK-ESYPE-DIVLALKSD 153 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~ 153 (176)
.|+++|||++|++++.+|+.+|++..+........+.+...+.... +.|.. ..++.+|..
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~ 203 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWT 203 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence 4799999999999999999998864333222222345555555553 33443 466666654
No 80
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.54 E-value=2.6e-14 Score=95.27 Aligned_cols=108 Identities=30% Similarity=0.358 Sum_probs=58.1
Q ss_pred EEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh---hcccccch---HHHHHHHHHHh----hcCCeE
Q 030477 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE---LECHVINE---DLVCDELEDIM----EQGGNI 81 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~l~~~i~~~~----~~~~~v 81 (176)
|+|+|+|||||||+|+.|+++++..+.+ .............. ........ ..+.+.+.... ....+|
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRD---IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNII 77 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHH---HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHH---HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEE
Confidence 7899999999999999999987222211 11111111000000 00011111 22333333321 245678
Q ss_pred EcCCCCCCCCCCcccEE-EEEeCChHHHHHHHhhcCCCCccc
Q 030477 82 VDYHGCDFFPERWFDRV-VVLQTENSVLYDRLTKRGYTGAKL 122 (176)
Q Consensus 82 id~~~~~~~~~~~~~~v-i~l~~~~~~~~~R~~~r~~~~~~~ 122 (176)
+|............... |||+||++++.+|+..|++.....
T Consensus 78 id~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~~~~ 119 (129)
T PF13238_consen 78 IDGILSNLELERLFDIKFIFLDCSPEELRKRLKKRGRKEEKK 119 (129)
T ss_dssp EEESSEEECETTEEEESSEEEE--HHHHHHHHHCTTTSCHHH
T ss_pred EecccchhcccccceeeEEEEECCHHHHHHHHHhCCCCCCCc
Confidence 88654433333222333 999999999999999988754443
No 81
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.53 E-value=9e-14 Score=97.96 Aligned_cols=149 Identities=23% Similarity=0.173 Sum_probs=77.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcC-
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQG- 78 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~- 78 (176)
+.++.+|+|+|+|||||||+++.|+++++ ..+++.+.+..... ...+..... .........+...+ ..+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~---~~~~~~~~~l~~~l~~~g~ 79 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSR---IEMALKRAKLAKFLADQGM 79 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHH---HHHHHHHHHHHHHHHhCCC
Confidence 56788999999999999999999999885 66777555433211 111111000 00011112222222 223
Q ss_pred CeEEcCCCCC--CCCC----CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEe
Q 030477 79 GNIVDYHGCD--FFPE----RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLAL 150 (176)
Q Consensus 79 ~~vid~~~~~--~~~~----~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~ 150 (176)
.+|+|..... .... .....+|||++|++++.+|+..+... . ...+.+...+..+.+.|.. +.+|++
T Consensus 80 ~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~-~-----~~~~~~~~~~~~~~~~~~~~Ad~vI~~ 153 (176)
T PRK05541 80 IVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYT-K-----ALKGEIKNVVGVDIPFDEPKADLVIDN 153 (176)
T ss_pred EEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHH-H-----HHcCcccccccCCCcccCCCCCEEEeC
Confidence 4566643211 0000 01246899999999999997532110 0 0011233334444444433 566666
Q ss_pred cC-CCHHHHHHHHHH
Q 030477 151 KS-DTIEDITRNIAI 164 (176)
Q Consensus 151 ~~-~s~~ev~~~i~~ 164 (176)
++ .+++++.+.+..
T Consensus 154 ~~~~~~~~~v~~i~~ 168 (176)
T PRK05541 154 SCRTSLDEKVDLILN 168 (176)
T ss_pred CCCCCHHHHHHHHHH
Confidence 54 255554444433
No 82
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.53 E-value=5e-13 Score=95.00 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=78.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHH--------------------
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD-------------------- 69 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------- 69 (176)
.+++|.||+||||||+++.|+..++..++..+..+...... . .. +.+.+..+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA-G-SE--NHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch-h-HH--hheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 58999999999999999999998776666655443322110 0 00 001111111111
Q ss_pred --HHHHHhh-cCCeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh
Q 030477 70 --ELEDIME-QGGNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE 140 (176)
Q Consensus 70 --~i~~~~~-~~~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (176)
.++..+. +..+|++... ...+.. ...+|||++|.+++.+|+..|+... .+. +...+. +.+
T Consensus 79 ~~~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~--~~~vi~l~~s~e~l~~RL~~R~~~~---~~~-----i~~rl~-r~~ 147 (186)
T PRK10078 79 GIEIDLWLHAGFDVLVNGSRAHLPQARARYQS--ALLPVCLQVSPEILRQRLENRGREN---ASE-----INARLA-RAA 147 (186)
T ss_pred cHHHHHHHhCCCEEEEeChHHHHHHHHHHcCC--CEEEEEEeCCHHHHHHHHHHhCCCC---HHH-----HHHHHH-Hhh
Confidence 1222232 3445665432 111221 3468999999999999998775321 111 222221 223
Q ss_pred cCCC-CcEEEecCCCHHHHHHHHHHHHH
Q 030477 141 SYPE-DIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 141 ~~~~-~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
.|.. +.++..++.+++++.+.+..++.
T Consensus 148 ~~~~ad~~vi~~~~s~ee~~~~i~~~l~ 175 (186)
T PRK10078 148 RYQPQDCHTLNNDGSLRQSVDTLLTLLH 175 (186)
T ss_pred hhccCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 3443 32333355589999888887764
No 83
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.52 E-value=2.5e-12 Score=91.93 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=79.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---CCeEeehhH--------HHhhcccCC---Cchhhhccccc--c-hHHHHHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---QLRHINIGE--------LVREKNLHD---GWDDELECHVI--N-EDLVCDELE 72 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~--~-~~~l~~~i~ 72 (176)
++|+|.|++||||||+++.|++.+ |..++.... .++...... .........++ + ...+.+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999988 665554322 222211100 01110010110 0 011222222
Q ss_pred HHhhcC-CeEEcCCC-------CCCC---------------CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchh-HH
Q 030477 73 DIMEQG-GNIVDYHG-------CDFF---------------PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI-EC 128 (176)
Q Consensus 73 ~~~~~~-~~vid~~~-------~~~~---------------~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~-~~ 128 (176)
.....+ .+|+|... .... ....++.+|||++|++++.+|+.+|+.......... ..
T Consensus 81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 160 (200)
T cd01672 81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFH 160 (200)
T ss_pred HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHH
Confidence 223233 45556211 0000 001378999999999999999998875322101111 11
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHH
Q 030477 129 EIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
+.....+......+.. .++.+++. +++++.+.+...+.
T Consensus 161 ~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 161 ERVREGYLELAAQEPE-RIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred HHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHHHHHHHHh
Confidence 2222223322222222 34555554 78888888877653
No 84
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.52 E-value=2.8e-13 Score=96.12 Aligned_cols=152 Identities=19% Similarity=0.263 Sum_probs=83.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchH----------------------
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINED---------------------- 65 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 65 (176)
++++|+|+|||||||||+++.|.+++.-.++..+...|.+...+.-+.++ ++.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY--~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTY--FFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCcee--EeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 67899999999999999999998887444556566666655443322222 222222
Q ss_pred -HHHHHHHHHhhcC-CeEEcCC--CCCCCCCCccc--EEEEEeC-ChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477 66 -LVCDELEDIMEQG-GNIVDYH--GCDFFPERWFD--RVVVLQT-ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA 138 (176)
Q Consensus 66 -~l~~~i~~~~~~~-~~vid~~--~~~~~~~~~~~--~vi~l~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 138 (176)
.-.+.++..+..+ .+|+|.. ....+....++ .+||+.+ |.+++.+|+.+|+... .+... .++.....+.
T Consensus 81 Gt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s---~e~i~-~Rl~~~~~e~ 156 (186)
T PRK14737 81 GTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDS---EESIE-KRIENGIIEL 156 (186)
T ss_pred cCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCC---HHHHH-HHHHHHHHHH
Confidence 2333344444443 4555531 11111111222 5788877 4689999999887421 11121 2333332222
Q ss_pred HhcCCCCcEEEecCCCHHHHHHHHHHHHH
Q 030477 139 KESYPEDIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 139 ~~~~~~~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
......+.+| +|+ +.++..+.+..++.
T Consensus 157 ~~~~~~D~vI-~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 157 DEANEFDYKI-IND-DLEDAIADLEAIIC 183 (186)
T ss_pred hhhccCCEEE-ECc-CHHHHHHHHHHHHh
Confidence 2111123343 443 67877777776653
No 85
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.51 E-value=8.6e-13 Score=109.96 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=94.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCC--chh--hhc-------------ccccc----
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDG--WDD--ELE-------------CHVIN---- 63 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~--~~~--~~~-------------~~~~~---- 63 (176)
+.+.|.|.||+||||||+++.|++++|+++++.+.+.+.... ... +.+ ... .++++
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV 520 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence 356899999999999999999999999999999998777521 111 100 000 01110
Q ss_pred ------h----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477 64 ------E----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTG 119 (176)
Q Consensus 64 ------~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~ 119 (176)
+ ..+.+..+++...+++|+|..+.. .+|. .++-|||+++++++.+|..+.....
T Consensus 521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdigtvv~p~--a~~kifl~a~~~~Ra~Rr~~~~~~~ 598 (661)
T PRK11860 521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMGTVIFPD--AALKVFLTASAEARAERRYKQLISK 598 (661)
T ss_pred hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCccEECCC--CCeEEEEECChhHHHHHHHHHHHhC
Confidence 0 123334444445578999876644 4555 6789999999999988875421111
Q ss_pred --ccccchhHHHHHHH-HHHHHH--hcCCC---CcEEEecCCCHHHHHHHHHHHHHH
Q 030477 120 --AKLTNNIECEIFQV-LLEEAK--ESYPE---DIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 120 --~~~~~~~~~~~~~~-~~~~~~--~~~~~---~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
+...+....+..++ ..+..+ .++.. ..+|+++..+.+|+.+.|..+++.
T Consensus 599 ~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 599 GISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred CCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 11111221111111 111111 11222 356666667999999888887754
No 86
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.51 E-value=3.8e-13 Score=105.66 Aligned_cols=151 Identities=23% Similarity=0.295 Sum_probs=82.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---------CCCchhh------------hcccccchH---
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---------HDGWDDE------------LECHVINED--- 65 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~--- 65 (176)
..|.|+|++||||||+++.|++ +|++++|+|.+.+...- ...++.. +...++...
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999977 89999999998776311 1112211 111122111
Q ss_pred ---------HHHHHHHHHh---hcCCeEE-cCCCC-C-CCCCCcccEEEEEeCChHHHHHHHhhc-CCCCccccchhHHH
Q 030477 66 ---------LVCDELEDIM---EQGGNIV-DYHGC-D-FFPERWFDRVVVLQTENSVLYDRLTKR-GYTGAKLTNNIECE 129 (176)
Q Consensus 66 ---------~l~~~i~~~~---~~~~~vi-d~~~~-~-~~~~~~~~~vi~l~~~~~~~~~R~~~r-~~~~~~~~~~~~~~ 129 (176)
.+.+.+...+ .++.+++ +.... + .+. ..+|.+||+++|.+++.+|+..| +.... ... .
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~~~-~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~----~a~-~ 154 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESGMA-PLFHLVVVVDADVEVRVRRLVEQRGMAEA----DAR-A 154 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCCch-hhCCEEEEEECCHHHHHHHHHhcCCCCHH----HHH-H
Confidence 1222222222 1233444 32211 0 111 23688999999999999999874 32211 111 1
Q ss_pred HHHHH-HHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 130 IFQVL-LEEAKESYPEDIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
++... ..+.....+ +.+++ |+.+.+++...+..+++..
T Consensus 155 ri~~Q~~~e~k~~~A-D~vId-N~~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 155 RIAAQASDEQRRAVA-DVWLD-NSGTPDELVEAVRALWADR 193 (395)
T ss_pred HHHhcCChHHHHHhC-CEEEE-CCCCHHHHHHHHHHHHHHH
Confidence 11111 111111111 34444 5568888888888776443
No 87
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.51 E-value=1e-12 Score=95.07 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHHhhcccCCCc---hhhhc-ccccchHHHHHHHHHHhhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELVREKNLHDGW---DDELE-CHVINEDLVCDELEDIMEQ 77 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~l~~~i~~~~~~ 77 (176)
++.++.+|.|+|++||||||+++.|++.++ +.+++.|++.......... ...+. ...++.+.+.+.+..+..+
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 456888999999999999999999999883 4567777765432110000 00000 0011223344444332211
Q ss_pred ------------------------C-CeEEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 78 ------------------------G-GNIVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 78 ------------------------~-~~vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
. -+|+|....-..+ ...+|.+||+++|.+++.+|...|+.
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~ 148 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDV 148 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcc
Confidence 1 1344432211111 13478999999999999999888874
No 88
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.51 E-value=3.4e-13 Score=101.41 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=78.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHH--hhcCCeEEcC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDI--MEQGGNIVDY 84 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~~~vid~ 84 (176)
..+.+|+|+|++||||||+++.|. ..|+.+++.-..... ..+.+..... ...-.+++|.
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~~L~------------------~~l~~~~~~~~~~~~~av~iD~ 64 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLPPSLL------------------PKLVELLAQSGGIRKVAVVIDV 64 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcCHHHH------------------HHHHHHHHhcCCCCCeEEEEcc
Confidence 345799999999999999999995 578877753221100 0111111110 0111234443
Q ss_pred CCCCCCCC----------C-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecC
Q 030477 85 HGCDFFPE----------R-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKS 152 (176)
Q Consensus 85 ~~~~~~~~----------~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 152 (176)
.....+.. . ....+|||+++++++.+|+..+.+.++........+.+........+.+. .+.+|++++
T Consensus 65 r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~ 144 (288)
T PRK05416 65 RSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSE 144 (288)
T ss_pred CchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCC
Confidence 32211000 0 11247999999999999997544344544321111112222222223333 267888887
Q ss_pred CCHHHHHHHHHHHHH
Q 030477 153 DTIEDITRNIAILTD 167 (176)
Q Consensus 153 ~s~~ev~~~i~~~~~ 167 (176)
.+++++.+.|...+.
T Consensus 145 ls~~el~e~I~~~l~ 159 (288)
T PRK05416 145 LSVHQLRERIRERFG 159 (288)
T ss_pred CCHHHHHHHHHHHHh
Confidence 799999988877663
No 89
>PLN02924 thymidylate kinase
Probab=99.50 E-value=1.6e-12 Score=94.48 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC---eEeeh---------hHHHhhccc-CCCchhhhcccccchH--HHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL---RHINI---------GELVREKNL-HDGWDDELECHVINED--LVCDEL 71 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~---~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~--~l~~~i 71 (176)
+++++|+|.|++||||||+++.|++.++. .++-. +..++.... ...........++..+ .....+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I 93 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLM 93 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999843 32211 011111110 0111111111111111 112334
Q ss_pred HHHhhcCC-eEEcCCC--------CCCCC----------CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477 72 EDIMEQGG-NIVDYHG--------CDFFP----------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ 132 (176)
Q Consensus 72 ~~~~~~~~-~vid~~~--------~~~~~----------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 132 (176)
...+..+. ||.|... ...+. ...||++|||++|++++.+|...++ .+.+.....+...
T Consensus 94 ~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~---~~~E~~~~~~rv~ 170 (220)
T PLN02924 94 ERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG---ERYEKLEFQKKVA 170 (220)
T ss_pred HHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccccHHHHHHHH
Confidence 44444444 4445211 00110 0148999999999999999964321 2222211112222
Q ss_pred HHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 133 VLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
..+.. +....+..+|+. +++++.+.|..++...
T Consensus 171 ~~Y~~----la~~~~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 171 KRFQT----LRDSSWKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred HHHHH----HhhcCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 22222 222345555665 8999999998888653
No 90
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.50 E-value=1.4e-13 Score=96.94 Aligned_cols=104 Identities=25% Similarity=0.321 Sum_probs=62.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC---------chhh------------hcccccchHH---
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG---------WDDE------------LECHVINEDL--- 66 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~~~~--- 66 (176)
+|.|||..||||||+++.|++ +|++++++|.+.+....... |+.. +...++....
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~ 80 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK 80 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence 689999999999999999977 99999999999877632111 1111 1111121111
Q ss_pred ---------HHHHHHHHh---hc-CCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcC
Q 030477 67 ---------VCDELEDIM---EQ-GGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 67 ---------l~~~i~~~~---~~-~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
+.+.+...+ .. ..+++|.+.. ..+. ..+|.+|++.||.+++.+|+.+|+
T Consensus 81 ~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~-~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 81 KLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLE-KLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGG-GGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHh-hhhceEEEEECCHHHHHHHHHhhC
Confidence 222222222 11 3456665431 1111 247899999999999999999884
No 91
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.50 E-value=7.8e-13 Score=90.74 Aligned_cols=103 Identities=26% Similarity=0.256 Sum_probs=63.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchhh-hcccccchHHHHHHHHH-Hh-hcCCeEE
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDDE-LECHVINEDLVCDELED-IM-EQGGNIV 82 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~l~~~i~~-~~-~~~~~vi 82 (176)
+|+|+|+|||||||+|+.|++.+++.+++.|.+.... ......... ...++ ..+.+.... .. .+.++|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWL---QALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHH---HHHHHHHHHHHHhCCCCEEE
Confidence 5899999999999999999999999999988875431 111111111 11111 111111111 21 3456788
Q ss_pred cCCCCC-----CCC---CCcccEEEEEeCChHHHHHHHhhcC
Q 030477 83 DYHGCD-----FFP---ERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 83 d~~~~~-----~~~---~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
|..... .+. ......+|||.+|++++.+|+..|.
T Consensus 78 d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 78 ACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred EeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 754311 011 1112358999999999999999885
No 92
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.50 E-value=4.3e-13 Score=112.62 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=93.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-----CCchh---------------------------hh
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-----DGWDD---------------------------EL 57 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-----~~~~~---------------------------~~ 57 (176)
..|.|.|||||||||+|+.||+++|+.+++.+.+.+..... ..... ..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 47999999999999999999999999999998876653211 00000 00
Q ss_pred ccccc---------c-h----------------HHHHHHHHHHh-hcC---------CeEEcCCCCC--CCCCCcccEEE
Q 030477 58 ECHVI---------N-E----------------DLVCDELEDIM-EQG---------GNIVDYHGCD--FFPERWFDRVV 99 (176)
Q Consensus 58 ~~~~~---------~-~----------------~~l~~~i~~~~-~~~---------~~vid~~~~~--~~~~~~~~~vi 99 (176)
...+. + + +.+....+... ..+ ++|+|..+.. .+|. .++-|
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtvv~p~--a~~K~ 159 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTVVAPD--AEVRI 159 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceEEecC--CCeEE
Confidence 00000 0 0 11222233332 222 7899876544 4554 67899
Q ss_pred EEeCChHHHHHHHhhcCCCCccccchhHHHHH-HHHHHH--HHhc--CCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477 100 VLQTENSVLYDRLTKRGYTGAKLTNNIECEIF-QVLLEE--AKES--YPEDIVLALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 100 ~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~i~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
||+++++++.+|...+..+ ...+....+.. ....+. ..+. +....+|+++..+.+++.+.+..+++...
T Consensus 160 ~l~A~~~~Ra~Rr~~~~~~--~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~~~ 233 (712)
T PRK09518 160 LLTAREEVRQARRSGQDRS--ETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDAI 233 (712)
T ss_pred EEECCHHHHHHHHHHhhhc--CCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999988766532 11112211111 111111 1111 11136777777799999999999886653
No 93
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.49 E-value=1.7e-12 Score=90.16 Aligned_cols=146 Identities=19% Similarity=0.232 Sum_probs=87.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHH---------------------
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDL--------------------- 66 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 66 (176)
++.+++|+||+|+||||+.++|-++. -..++.+...|.+...+.-+.++ ++.+.+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY--~Fvs~~EF~~~i~~~~fLE~a~~~gnyY 79 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDY--FFVTEEEFEELIERDEFLEWAEYHGNYY 79 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCcee--EeCCHHHHHHHHhcCCcEEEEEEcCCcc
Confidence 78899999999999999999998888 55778888888887766655443 3333322
Q ss_pred --HHHHHHHHh-hcCCeEEcCCC------CCCCCCCcccEEEEEeC-ChHHHHHHHhhcCCCCccccchhHHHHHHHHHH
Q 030477 67 --VCDELEDIM-EQGGNIVDYHG------CDFFPERWFDRVVVLQT-ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE 136 (176)
Q Consensus 67 --l~~~i~~~~-~~~~~vid~~~------~~~~~~~~~~~vi~l~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~ 136 (176)
....++..+ .+..+++|... ...+|. ...||+.+ +.+++.+|+..|+.+. .+.+ ..++.....
T Consensus 80 GT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~---~v~IFi~pPs~eeL~~RL~~Rgtds---~e~I-~~Rl~~a~~ 152 (191)
T COG0194 80 GTSREPVEQALAEGKDVILDIDVQGALQVKKKMPN---AVSIFILPPSLEELERRLKGRGTDS---EEVI-ARRLENAKK 152 (191)
T ss_pred cCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCC---eEEEEEcCCCHHHHHHHHHccCCCC---HHHH-HHHHHHHHH
Confidence 233333333 34566665321 223332 24566654 5799999999887422 2112 224444444
Q ss_pred HHHhcCCC-CcEEEecCCCHHHHHHHHHHHH
Q 030477 137 EAKESYPE-DIVLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 137 ~~~~~~~~-~~~i~~~~~s~~ev~~~i~~~~ 166 (176)
+.. .+.. +.+ .+| ...+.....+..++
T Consensus 153 Ei~-~~~~fdyv-ivN-dd~e~a~~~l~~ii 180 (191)
T COG0194 153 EIS-HADEFDYV-IVN-DDLEKALEELKSII 180 (191)
T ss_pred HHH-HHHhCCEE-EEC-ccHHHHHHHHHHHH
Confidence 332 2222 333 343 45776667776665
No 94
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.49 E-value=3e-13 Score=95.58 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=33.2
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK 47 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~ 47 (176)
+|.|+|++||||||+++.|++ +|++++++|++.+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhh
Confidence 489999999999999999988 999999999987765
No 95
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.47 E-value=4.1e-12 Score=86.57 Aligned_cols=106 Identities=25% Similarity=0.326 Sum_probs=70.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCch---hhhcccccchHHHHHHHH--HHhhcCC-eE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWD---DELECHVINEDLVCDELE--DIMEQGG-NI 81 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~i~--~~~~~~~-~v 81 (176)
+++++++|.||+||||+++.+.+.+ +..+++.++++-+.......- ++....-.+.+..++... .+..... ++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~ii 83 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEII 83 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceE
Confidence 6899999999999999999999998 888899999876654322222 223322233344343322 2333334 88
Q ss_pred EcCCC--------CCCCCC-----CcccEEEEEeCChHHHHHHHhh
Q 030477 82 VDYHG--------CDFFPE-----RWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 82 id~~~--------~~~~~~-----~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
+|.|. ..++|. -.++.++.|.++|+++..|-.+
T Consensus 84 vDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 84 VDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred EeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhc
Confidence 88754 233332 2578999999999999777553
No 96
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.47 E-value=2.3e-12 Score=90.72 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=83.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-----cCCCchhhhcccccchHHHHHHHHHHh--hcCCe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-----LHDGWDDELECHVINEDLVCDELEDIM--EQGGN 80 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~ 80 (176)
.+.+++|+|++||||||+++.|+..++..+++.+++..... ..-.+.+. ....+ ...+.+.+.... ...++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g~ 79 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDE-DRLPW-LERLNDASYSLYKKNETGF 79 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcc-cchHH-HHHHHHHHHHHHhcCCCEE
Confidence 45689999999999999999999999998888776532211 00011110 00001 011111111111 23455
Q ss_pred EEcCCC----CCCCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecCC-
Q 030477 81 IVDYHG----CDFFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKSD- 153 (176)
Q Consensus 81 vid~~~----~~~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~- 153 (176)
|+.... .+.+... .+-.+|||++|++++.+|+.+|... . ...+.+..++...++... +..++.++..
T Consensus 80 iv~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~--~----~~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~ 153 (176)
T PRK09825 80 IVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGH--F----MPPDLLQSQFDALERPCADEHDIARIDVNH 153 (176)
T ss_pred EEEEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCC--C----CCHHHHHHHHHHcCCCCCCcCCeEEEECCC
Confidence 553211 1111111 1236899999999999999988631 1 234456665554443322 2356777765
Q ss_pred CHHHHHHHHHHHHH
Q 030477 154 TIEDITRNIAILTD 167 (176)
Q Consensus 154 s~~ev~~~i~~~~~ 167 (176)
+++++...+...++
T Consensus 154 ~~~~~~~~~~~~~~ 167 (176)
T PRK09825 154 DIENVTEQCRQAVQ 167 (176)
T ss_pred CHHHHHHHHHHHHH
Confidence 56555555544443
No 97
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.47 E-value=3.8e-13 Score=109.82 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=87.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCC------eEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cC
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQL------RHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QG 78 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~ 78 (176)
..++.+|+|+|+|||||||+|+.|++.++. .+++.|.+.........+........+ ..+......++. ++
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~--~~l~~~a~~v~~~Gg 466 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNI--LRIGFVASEITKNGG 466 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHH--HHHHHHHHHHHhCCC
Confidence 346779999999999999999999999985 788866653322211111111000000 111112222333 45
Q ss_pred CeEEcCCC---------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC---CCc
Q 030477 79 GNIVDYHG---------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP---EDI 146 (176)
Q Consensus 79 ~~vid~~~---------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 146 (176)
++|++... ...+.....-.+|||++|.+++.+|+.+. .... ...+.+..++..+.+.|. .+.
T Consensus 467 ~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~-----Ll~~-~~~~~i~~l~~~R~~yy~p~~Adl 540 (568)
T PRK05537 467 IAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKG-----LYAK-AREGKIKGFTGISDPYEPPANPEL 540 (568)
T ss_pred EEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccc-----cccc-chhchhhccccccccccCCCCCcE
Confidence 56667421 12222211115899999999999996422 1111 111234445555566664 257
Q ss_pred EEEecCCCHHHHHHHHHHHHHH
Q 030477 147 VLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 147 ~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
+++++..+++++.+.|...++.
T Consensus 541 ~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 541 VIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred EEECCCCCHHHHHHHHHHHHHH
Confidence 7777766898888777766543
No 98
>PRK13974 thymidylate kinase; Provisional
Probab=99.47 E-value=5.7e-12 Score=91.34 Aligned_cols=71 Identities=17% Similarity=0.043 Sum_probs=45.7
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSD-TIEDITRNIAILTDW 168 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~ 168 (176)
.++++|||++|++++.+|+..|.. ...... ...+..........|.+ +.++.+++. +++++.+.+..++..
T Consensus 134 ~pd~~i~ld~~~~~~~~R~~~R~d--D~~e~~--~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 134 SPDLTFFLEISVEESIRRRKNRKP--DRIEAE--GIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred CCCEEEEEeCCHHHHHHHHHhccc--Cchhhh--hHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999987642 122111 11222222223333333 466677766 899999999988864
No 99
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.1e-13 Score=95.09 Aligned_cols=105 Identities=23% Similarity=0.184 Sum_probs=59.3
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcccCCCchhhhcccccchH-HHHHHHHHHhhcC
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKNLHDGWDDELECHVINED-LVCDELEDIMEQG 78 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~~~ 78 (176)
.+.++..||++|+|||||||+|.+|.++| |+. ++|-|.+-......-.|..+-+ .++ .-...+.+++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR----~eniRRvaevAkll~da 94 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDR----IENIRRVAEVAKLLADA 94 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHH----HHHHHHHHHHHHHHHHC
Confidence 34567899999999999999999999987 543 4564444332222222322110 001 1122334455555
Q ss_pred CeEEcCCC-----------CCCCCCCcccEEEEEeCChHHHHHHHhh
Q 030477 79 GNIVDYHG-----------CDFFPERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 79 ~~vid~~~-----------~~~~~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
|+|+=... .+.+... .-+-||++||.+++.+|--+
T Consensus 95 G~iviva~ISP~r~~R~~aR~~~~~~-~FiEVyV~~pl~vce~RDpK 140 (197)
T COG0529 95 GLIVIVAFISPYREDRQMARELLGEG-EFIEVYVDTPLEVCERRDPK 140 (197)
T ss_pred CeEEEEEeeCccHHHHHHHHHHhCcC-ceEEEEeCCCHHHHHhcCch
Confidence 54331111 1222222 12469999999999998543
No 100
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.45 E-value=5e-12 Score=106.95 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=99.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CC----------Cchh--------------h----
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HD----------GWDD--------------E---- 56 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~----------~~~~--------------~---- 56 (176)
+..+|.|.|||||||||+|+.||++||+.+++.+.++|.... .. +... .
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTS 112 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceE
Confidence 447999999999999999999999999999999988665421 00 0000 0
Q ss_pred h------------------------------cccccch--------------------------HHHHHHHHHHhhcCCe
Q 030477 57 L------------------------------ECHVINE--------------------------DLVCDELEDIMEQGGN 80 (176)
Q Consensus 57 ~------------------------------~~~~~~~--------------------------~~l~~~i~~~~~~~~~ 80 (176)
+ ...+++. +.+....+.+...+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~~~~ 192 (863)
T PRK12269 113 YAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGARV 192 (863)
T ss_pred ecccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCE
Confidence 0 0011110 1244444445556789
Q ss_pred EEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH-H--hcCCC---CcEEEecC
Q 030477 81 IVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA-K--ESYPE---DIVLALKS 152 (176)
Q Consensus 81 vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~---~~~i~~~~ 152 (176)
|+|..+.. .||. .++-|||+++++++.+|-...... ....+....+..++=.... + .++.. ..+++++.
T Consensus 193 V~eGRDigTvVfPd--A~~KifL~As~e~RA~RR~~e~~~-~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~ 269 (863)
T PRK12269 193 VCEGRDLTTVVFVD--ADLKCYLDASIEARVARRWAQGTS-RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSC 269 (863)
T ss_pred EEECCCCccEECCC--CCEEEEEECCHHHHHHHHHHhhhc-cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCC
Confidence 99876543 5666 678999999999998876433321 1111122222111111111 1 11111 36666777
Q ss_pred CCHHHHHHHHHHHHHHHHhhc
Q 030477 153 DTIEDITRNIAILTDWVRNWQ 173 (176)
Q Consensus 153 ~s~~ev~~~i~~~~~~~~~~~ 173 (176)
.+.+++.+.+..++++-..|-
T Consensus 270 l~ieevv~~i~~~~~~~~~~~ 290 (863)
T PRK12269 270 LTIEEVCERIAREAHRRALWG 290 (863)
T ss_pred CCHHHHHHHHHHHHHhccccc
Confidence 799999999999888776664
No 101
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.43 E-value=2.9e-12 Score=89.17 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=77.0
Q ss_pred ECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-----CCCchhhhcccccchHHHHHHHHH----Hh-hcCC-eEEc
Q 030477 15 TGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-----HDGWDDELECHVINEDLVCDELED----IM-EQGG-NIVD 83 (176)
Q Consensus 15 ~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~----~~-~~~~-~vid 83 (176)
+|+|||||||+++.|++.+|..+++.|.+...... ...+.+. ........+.. .. .++. +++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~viv- 73 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD------DRKPWLQALNDAAFAMQRTNKVSLIV- 73 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh------hHHHHHHHHHHHHHHHHHcCCceEEE-
Confidence 59999999999999999999999997654221111 1111110 00111111111 11 2232 333
Q ss_pred CCC-----CCCCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCC-CH
Q 030477 84 YHG-----CDFFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSD-TI 155 (176)
Q Consensus 84 ~~~-----~~~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-s~ 155 (176)
... .+.+... .+-.+|||+||++++.+|+..|... .. ..+.+..++...+++-.. ..++.++.. ++
T Consensus 74 ~s~~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~---~a---~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~ 147 (163)
T PRK11545 74 CSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH---FF---KTQMLVTQFETLQEPGADETDVLVVDIDQPL 147 (163)
T ss_pred EecchHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC---CC---CHHHHHHHHHHcCCCCCCCCCEEEEeCCCCH
Confidence 221 1111111 1235899999999999999988642 21 334455555444433222 235666655 56
Q ss_pred HHHHHHHHHHHHHH
Q 030477 156 EDITRNIAILTDWV 169 (176)
Q Consensus 156 ~ev~~~i~~~~~~~ 169 (176)
+++.+.+...+..+
T Consensus 148 ~~~~~~~~~~~~~~ 161 (163)
T PRK11545 148 EGVVASTIEVIKKG 161 (163)
T ss_pred HHHHHHHHHHHHHh
Confidence 77776666666543
No 102
>PRK07933 thymidylate kinase; Validated
Probab=99.43 E-value=1.4e-11 Score=89.23 Aligned_cols=73 Identities=12% Similarity=0.021 Sum_probs=44.3
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCC-----ccccchh-HHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTG-----AKLTNNI-ECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
.||++|||++|+++..+|+.+|+... ...+... ..+...+.+......+....++.+|+. +++++.+.|...+
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999886421 1222211 112333333333333222355556655 8999988887654
No 103
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.43 E-value=4.3e-12 Score=91.06 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeE
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNI 81 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v 81 (176)
.++.+|+|+|++||||||+++.|+..+ +..+++.|++.........+...... ..-..+......+...+.+|
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~--~~~~~l~~~a~~~~~~G~~V 99 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRK--ENIRRVGEVAKLMVDAGLVV 99 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHH--HHHHHHHHHHHHHhhCCCEE
Confidence 467899999999999999999999876 35677766654332211111100000 00011222222233334444
Q ss_pred E-cCCC---------CCCCCCCcccE-EEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--C--Cc
Q 030477 82 V-DYHG---------CDFFPERWFDR-VVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP--E--DI 146 (176)
Q Consensus 82 i-d~~~---------~~~~~~~~~~~-vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~ 146 (176)
+ ++.. ...+.. .+. +|||++|++++.+|.. | +...... .+.+..+...+.+ |. . +.
T Consensus 100 I~~~~~~~~~~R~~~r~~l~~--~~~i~V~L~~~~e~~~~R~~-r----~l~~~~~-~~~~~~l~~~r~~-Y~~p~~ad~ 170 (198)
T PRK03846 100 LTAFISPHRAERQMVRERLGE--GEFIEVFVDTPLAICEARDP-K----GLYKKAR-AGEIRNFTGIDSV-YEAPESPEI 170 (198)
T ss_pred EEEeCCCCHHHHHHHHHHccc--CCEEEEEEcCCHHHHHhcCc-h----hHHHHhh-cCCccCccccccc-CCCCCCCCE
Confidence 4 3221 111221 233 7999999999999921 1 1110000 0011112223333 66 2 45
Q ss_pred EEEecCCCHHHHHHHHHHHHH
Q 030477 147 VLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 147 ~i~~~~~s~~ev~~~i~~~~~ 167 (176)
+|+++..+++++.+.|...+.
T Consensus 171 ~Idt~~~~~~~vv~~Il~~l~ 191 (198)
T PRK03846 171 HLDTGEQLVTNLVEQLLDYLR 191 (198)
T ss_pred EEECCCCCHHHHHHHHHHHHH
Confidence 666666688887776666554
No 104
>PRK13976 thymidylate kinase; Provisional
Probab=99.42 E-value=4e-11 Score=86.56 Aligned_cols=156 Identities=22% Similarity=0.212 Sum_probs=81.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC-----eEee--------hhHHHhhcccC-CCchhhhccccc---chHHHHHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL-----RHIN--------IGELVREKNLH-DGWDDELECHVI---NEDLVCDELE 72 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~-----~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~i~ 72 (176)
++|+|.|+.||||||+++.|++.|.. .++- .++.++..... ..........++ ..+.+.+.+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~ 80 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL 80 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998732 2221 12222222111 011111111111 1122333344
Q ss_pred HHhhcCCeEE-cCCC-----CCC----------------CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477 73 DIMEQGGNIV-DYHG-----CDF----------------FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI 130 (176)
Q Consensus 73 ~~~~~~~~vi-d~~~-----~~~----------------~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~ 130 (176)
..+..+.+|| |... .+. .....||++|||++|++++.+|+..++.. ..+....+.
T Consensus 81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e---~~~~~~l~~ 157 (209)
T PRK13976 81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE---FMDLEFYDK 157 (209)
T ss_pred HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh---cccHHHHHH
Confidence 4444555544 5210 000 11124899999999999999998654322 111122233
Q ss_pred HHHHHHHHHhcCCCCcEEEecC----CC---HHHHHHHHHHHHHHH
Q 030477 131 FQVLLEEAKESYPEDIVLALKS----DT---IEDITRNIAILTDWV 169 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~----~s---~~ev~~~i~~~~~~~ 169 (176)
....+......+.. .++.+++ .+ ++++.+.|..++...
T Consensus 158 v~~~Y~~l~~~~~~-~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~ 202 (209)
T PRK13976 158 VRKGFREIVIKNPH-RCHVITCIDAKDNIEDINSVHLEIVKLLHAV 202 (209)
T ss_pred HHHHHHHHHHhCCC-CeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence 44444444433333 2233332 24 999999999888654
No 105
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.42 E-value=4.3e-12 Score=90.62 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=25.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
+|+|.|++||||||+++.|++.+|+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 5899999999999999999998877655
No 106
>PRK12338 hypothetical protein; Provisional
Probab=99.42 E-value=1.2e-11 Score=93.81 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=36.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK 47 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~ 47 (176)
|+++.+|+|+|+|||||||+|+.||+++|+.++..+|.++..
T Consensus 1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~ 42 (319)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREV 42 (319)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHH
Confidence 457789999999999999999999999999998667776664
No 107
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.42 E-value=2.8e-12 Score=92.52 Aligned_cols=154 Identities=13% Similarity=0.114 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhcccCCCchhhhcccccch---------------------
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREKNLHDGWDDELECHVINE--------------------- 64 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 64 (176)
.++.+|+|+|||||||||+++.|.+. +..+ +......+.+...+.-+.++ .+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~~~~~~~ttr~~r~~e~~g~~y--~fv~~~~f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER-KLPFHFVVTATTRPKRPGEIDGVDY--HFVTPEEFREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc-CCcccccccccCCCCCCCCCCCCee--eeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence 36789999999999999999999764 3222 21111122111111101100 00010
Q ss_pred --HHHHHHHHHHhhcC-CeEEcCCC--CCCCCCCcccEEEEEeC--ChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH
Q 030477 65 --DLVCDELEDIMEQG-GNIVDYHG--CDFFPERWFDRVVVLQT--ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE 137 (176)
Q Consensus 65 --~~l~~~i~~~~~~~-~~vid~~~--~~~~~~~~~~~vi~l~~--~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 137 (176)
......+...+..+ .+|++... ...+....++.++++.+ +.+++.+|+..|+... . ..-..++...+.+
T Consensus 88 ~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~---~-~~~~~Rl~~~~~e 163 (206)
T PRK14738 88 YYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTES---P-EELERRLATAPLE 163 (206)
T ss_pred eecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCC---H-HHHHHHHHHHHHH
Confidence 11223444444443 45665321 12223334566555554 4668899999886321 1 1111233333332
Q ss_pred HHhcCCCCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 138 AKESYPEDIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 138 ~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
...... ..++.+|+ .+++++.+.+..++..
T Consensus 164 ~~~~~~-~~~~iId~~~~~e~v~~~i~~~l~~ 194 (206)
T PRK14738 164 LEQLPE-FDYVVVNPEDRLDEAVAQIMAIISA 194 (206)
T ss_pred HhcccC-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence 222222 24555665 3788888888877753
No 108
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.41 E-value=1.2e-11 Score=91.77 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHH---HhhcCCeEEcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELED---IMEQGGNIVDYH 85 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~~~~~vid~~ 85 (176)
+.+|+|+|++||||||..+.| +.+|+.++|.=...--+ .+.+.+.. ....-.+++|..
T Consensus 1 m~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDNlP~~Ll~------------------~l~~~~~~~~~~~~~~Ai~iD~R 61 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRAL-EDLGYYCVDNLPPSLLP------------------QLIELLAQSNSKIEKVAIVIDIR 61 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHH-HhcCeeEEcCCcHHHHH------------------HHHHHHHhcCCCCceEEEEEeCC
Confidence 468999999999999999999 67999888731110000 00111110 000111223322
Q ss_pred CCCCCCC-----------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecC
Q 030477 86 GCDFFPE-----------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKS 152 (176)
Q Consensus 86 ~~~~~~~-----------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~ 152 (176)
....+.. ...-.++||+|+.+++.+|...-.+.+|........+... ..++..++.. .+.+|++++
T Consensus 62 ~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~-~Er~~L~~lr~~Ad~vIDTs~ 140 (284)
T PF03668_consen 62 SREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIE-KERELLEPLRERADLVIDTSN 140 (284)
T ss_pred ChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHH-HHHHHHHHHHHhCCEEEECCC
Confidence 1111100 0112489999999999999987666667654332112211 1112222222 268899998
Q ss_pred CCHHHHHHHHHHHHH
Q 030477 153 DTIEDITRNIAILTD 167 (176)
Q Consensus 153 ~s~~ev~~~i~~~~~ 167 (176)
.++.++.+.+...+.
T Consensus 141 l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 141 LSVHQLRERIRERFG 155 (284)
T ss_pred CCHHHHHHHHHHHhc
Confidence 899999988887653
No 109
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.41 E-value=5.9e-12 Score=95.80 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchhhhcccccc---h----HHHHHHHHHHh-hcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDDELECHVIN---E----DLVCDELEDIM-EQGG 79 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~l~~~i~~~~-~~~~ 79 (176)
+.+|+++|+|||||||+|+.|++++ ++.+++.|++..........+. +.+. . ....+.+...+ .+.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 77 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGE----YKFTKEKEDLVTKAQEAAALAALKSGKS 77 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccc----cccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence 3689999999999999999999999 8999999887554322111110 1110 1 12223333333 3456
Q ss_pred eEEcCCCCCC---------CCCCccc-EEEEEeCChHHHHHHHhhcCC
Q 030477 80 NIVDYHGCDF---------FPERWFD-RVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 80 ~vid~~~~~~---------~~~~~~~-~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+|+|...... ....... .+|+|.+|.+++.+|+.+|+.
T Consensus 78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 125 (300)
T PHA02530 78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE 125 (300)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc
Confidence 8888543211 1111122 369999999999999999853
No 110
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.40 E-value=1.9e-12 Score=91.58 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=66.5
Q ss_pred eEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchh---hhc-ccccchHHHHHHHHHHhhcC-------
Q 030477 11 NILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDD---ELE-CHVINEDLVCDELEDIMEQG------- 78 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~i~~~~~~~------- 78 (176)
+|.|+|+|||||||+|+.|++.+ ++.+++.|++............ ..+ ...++-+.+.+.+..+..++
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58899999999999999999998 7889999988765431110000 000 01123344555554433221
Q ss_pred --------------------------------CeEEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 79 --------------------------------GNIVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 79 --------------------------------~~vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
-+|+++...-..+ ...+|++||+++|.+++.+|..+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCC
Confidence 1333432210100 02478899999999999999998864
No 111
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.40 E-value=5.3e-12 Score=88.39 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=90.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-C--------CCchhh------------hcccccc-hH-
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-H--------DGWDDE------------LECHVIN-ED- 65 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~--------~~~~~~------------~~~~~~~-~~- 65 (176)
+.+|.|+|..||||||+++.+ +.+|++++|.|.+.++... . +.|+.+ ....++. .+
T Consensus 1 M~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 467899999999999999999 5899999999999887521 1 111111 1122221 11
Q ss_pred --------------HHHHHHHHHh-hcCC-eEEcCCCCCCCCC---CcccEEEEEeCChHHHHHHHhhcCCCCccccchh
Q 030477 66 --------------LVCDELEDIM-EQGG-NIVDYHGCDFFPE---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI 126 (176)
Q Consensus 66 --------------~l~~~i~~~~-~~~~-~vid~~~~~~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~ 126 (176)
.+++.+...+ .+.. +|+|... +|.. .+...+|.+.||.++..+|+.+|+ +..+++.
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPL--LFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd---~lse~dA 154 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPL--LFEAKLLKICHKTVVVTCDEELQLERLVERD---ELSEEDA 154 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechH--HHHHhHHhheeeEEEEEECcHHHHHHHHHhc---cccHHHH
Confidence 1222222222 3333 4667532 1111 123468899999999999999987 3333222
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477 127 ECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
+. +++.++.-.. ......++.-|+++++++.+.+..+...++
T Consensus 155 e~-Rl~sQmp~~~-k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~ 196 (225)
T KOG3220|consen 155 EN-RLQSQMPLEK-KCELADVVIDNNGSLEDLYEQVEKVLALLQ 196 (225)
T ss_pred HH-HHHhcCCHHH-HHHhhheeecCCCChHHHHHHHHHHHHHhc
Confidence 22 3333222111 122223444555689999999998887664
No 112
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=3.4e-12 Score=89.94 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---CCeEeehhH-HHhhcc---cCCCchhhhcccccchHHHHHHHHHHhhcCCeE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---QLRHINIGE-LVREKN---LHDGWDDELECHVINEDLVCDELEDIMEQGGNI 81 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v 81 (176)
+++|+++|+|||||||+|+.|++.| ++.+++... +.+-.. ....+.+.+...+ .+. ....+...+.+.-||
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-~ks-~~rlldSalkn~~VI 78 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-LKS-VERLLDSALKNYLVI 78 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-HHH-HHHHHHHHhcceEEE
Confidence 5899999999999999999999988 333333322 211111 1111111111111 111 111333333333456
Q ss_pred EcCCC-CCCCCCC---------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh
Q 030477 82 VDYHG-CDFFPER---------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE 140 (176)
Q Consensus 82 id~~~-~~~~~~~---------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (176)
+|... ...+++. ..-.+||+.||++++.+|...|+. + ...+.+.+++...++
T Consensus 79 vDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge--p-----ip~Evl~qly~RfEe 140 (261)
T COG4088 79 VDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE--P-----IPEEVLRQLYDRFEE 140 (261)
T ss_pred EecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC--C-----CCHHHHHHHHHhhcC
Confidence 66432 2233321 133599999999999999876653 1 223456666665554
No 113
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.39 E-value=8.1e-12 Score=90.02 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=80.3
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh--------cc------ccc----ch--
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL--------EC------HVI----NE-- 64 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~~----~~-- 64 (176)
+|.++.+|+|.||+||||||+++.|+..++..++..+...+.+...+.-+.++ .. ++. ..
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNY 80 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcc
Confidence 36688999999999999999999999987633333333333332211000000 00 000 00
Q ss_pred -HHHHHHHHHHhhcCC-eEEcCCC--CCCCCCCcc-cEEEEE-eCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477 65 -DLVCDELEDIMEQGG-NIVDYHG--CDFFPERWF-DRVVVL-QTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA 138 (176)
Q Consensus 65 -~~l~~~i~~~~~~~~-~vid~~~--~~~~~~~~~-~~vi~l-~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 138 (176)
......++..+..+. +|+|... ...+....+ ..+|++ .++.+++.+|+..|+...+. .. ..++.....+.
T Consensus 81 y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~---~i-~~rl~~~~~~~ 156 (205)
T PRK00300 81 YGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEE---VI-ARRLAKAREEI 156 (205)
T ss_pred ccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHH---HH-HHHHHHHHHHH
Confidence 011334444444443 4555321 111111111 234444 56789999999988742211 11 12333333222
Q ss_pred HhcCCC-CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 139 KESYPE-DIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 139 ~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
. .+.. +.++ +| .+.+++...+..+++..
T Consensus 157 ~-~~~~~d~vi-~n-~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 157 A-HASEYDYVI-VN-DDLDTALEELKAIIRAE 185 (205)
T ss_pred H-hHHhCCEEE-EC-CCHHHHHHHHHHHHHHH
Confidence 2 1222 4444 44 47888888888888554
No 114
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.38 E-value=2.3e-11 Score=85.90 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=72.6
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCe---EeehhHHHhhcccC-C--------Cchhhh-cc-ccc---ch---HHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLR---HINIGELVREKNLH-D--------GWDDEL-EC-HVI---NE---DLVCD 69 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~---~~~~~~~~~~~~~~-~--------~~~~~~-~~-~~~---~~---~~l~~ 69 (176)
.+|+|+|||||||||+++.|+..++.. .+....+.+..... . .+.... .. +.. .. .....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 578999999999999999999977531 12111111110000 0 000000 00 000 00 00111
Q ss_pred HHHHHh-hcCCeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC
Q 030477 70 ELEDIM-EQGGNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY 142 (176)
Q Consensus 70 ~i~~~~-~~~~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (176)
.+...+ .+..+|++... ...++ ...+|||++|.+++.+|+..|+...+ + .+...+. ....|
T Consensus 82 ~i~~~~~~g~~vv~~g~~~~~~~~~~~~~---~~~~i~l~~~~~~~~~Rl~~R~~~~~---~-----~~~~rl~-~~~~~ 149 (179)
T TIGR02322 82 EIDQWLEAGDVVVVNGSRAVLPEARQRYP---NLLVVNITASPDVLAQRLAARGRESR---E-----EIEERLA-RSARF 149 (179)
T ss_pred HHHHHHhcCCEEEEECCHHHHHHHHHHCC---CcEEEEEECCHHHHHHHHHHcCCCCH---H-----HHHHHHH-HHhhc
Confidence 233333 33455665421 11122 23689999999999999998864211 1 1111221 22233
Q ss_pred C--C-CcEEEecCCCHHHHHHHHHHHHH
Q 030477 143 P--E-DIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 143 ~--~-~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
. . +.++..++.+++++.+.+..++.
T Consensus 150 ~~~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 150 AAAPADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred ccccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 2 2 34434444588888888877663
No 115
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.37 E-value=7.5e-12 Score=87.45 Aligned_cols=149 Identities=17% Similarity=0.102 Sum_probs=76.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCe--EeehhHHHhhcccCC-Cchhhh------c---ccc-cchHHHHHHHHHHh-
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLR--HINIGELVREKNLHD-GWDDEL------E---CHV-INEDLVCDELEDIM- 75 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~~~~~~~~~~~~-~~~~~~------~---~~~-~~~~~l~~~i~~~~- 75 (176)
++|+|.|+|.|||||+++.|.+.+.-+ ++..|.+........ ..+..+ . ..+ .....+...++...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~ 81 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR 81 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999988554 567788776432211 100000 0 000 01122333333333
Q ss_pred hcCCeEEcCCCC------CCCC---CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCc
Q 030477 76 EQGGNIVDYHGC------DFFP---ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDI 146 (176)
Q Consensus 76 ~~~~~vid~~~~------~~~~---~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (176)
.+.++|+|.-.. +.+. ...+-+.|-+.||.+++.+|...|+.. ...... ..++.....-.-+.
T Consensus 82 aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR---~~G~a~-----~q~~~Vh~~~~YDl 153 (174)
T PF07931_consen 82 AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDR---PIGLAA-----WQAEHVHEGGRYDL 153 (174)
T ss_dssp TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSS---STTHHH-----HHTTGGGTT---SE
T ss_pred CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCc---chHHHH-----HHHhhcccCCCCCE
Confidence 345678773111 1110 012335788899999999999999842 221110 01111111112267
Q ss_pred EEEecCCCHHHHHHHHHHHH
Q 030477 147 VLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 147 ~i~~~~~s~~ev~~~i~~~~ 166 (176)
.++++..++++.++.|.+.+
T Consensus 154 eVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 154 EVDTSATSPEECAREILARL 173 (174)
T ss_dssp EEETTSS-HHHHHHHHHTT-
T ss_pred EEECCCCCHHHHHHHHHHHh
Confidence 77887779999888887654
No 116
>PRK06547 hypothetical protein; Provisional
Probab=99.37 E-value=1.9e-11 Score=85.70 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCc----hhhh----cccc--cc--hHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGW----DDEL----ECHV--IN--EDLVCDELED 73 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~--~~--~~~l~~~i~~ 73 (176)
...+.+|+|+|++||||||+++.|++.+++++++.|++.....-.... ...+ .... ++ .+.. .....
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~-~~~~~ 90 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRP-GDWVS 90 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCC-CCcEE
Confidence 356789999999999999999999999999999998876432110000 0000 0000 00 0000 00000
Q ss_pred HhhcCCeEEcCCCCCCC-CCCccc-----EEEEEeCChHHHHHHHhhcCC
Q 030477 74 IMEQGGNIVDYHGCDFF-PERWFD-----RVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 74 ~~~~~~~vid~~~~~~~-~~~~~~-----~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+-....+|++....-.- -+...+ +.|||++|.+++.+|..+|+.
T Consensus 91 l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~ 140 (172)
T PRK06547 91 VEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDP 140 (172)
T ss_pred eCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCc
Confidence 00122345564321100 011234 799999999999999999974
No 117
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.36 E-value=1.7e-11 Score=89.92 Aligned_cols=115 Identities=21% Similarity=0.355 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEe---ehhHHHhhcc------cCCCchh--------------------hh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHI---NIGELVREKN------LHDGWDD--------------------EL 57 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~---~~~~~~~~~~------~~~~~~~--------------------~~ 57 (176)
.+.++|++.|+.|||||++|+.||++||+.++ ++|++.-..- ...++.. .+
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 35689999999999999999999999998765 4555533221 1111110 01
Q ss_pred ccccc--chHHHHHHHHHHh-hcCCeEEcCCC------------CCCCCC-----------------CcccEEEEEeCCh
Q 030477 58 ECHVI--NEDLVCDELEDIM-EQGGNIVDYHG------------CDFFPE-----------------RWFDRVVVLQTEN 105 (176)
Q Consensus 58 ~~~~~--~~~~l~~~i~~~~-~~~~~vid~~~------------~~~~~~-----------------~~~~~vi~l~~~~ 105 (176)
+..++ +-++.++.++.++ .+.|+|++.+- ...+.. -++.+||||+.|.
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv 228 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPV 228 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCc
Confidence 11111 1144556666666 56789986321 011111 1477999999999
Q ss_pred HHHHHHHhhcCCCCcc
Q 030477 106 SVLYDRLTKRGYTGAK 121 (176)
Q Consensus 106 ~~~~~R~~~r~~~~~~ 121 (176)
....+++.+|+...+.
T Consensus 229 ~~v~~~Ik~rg~~~Ei 244 (393)
T KOG3877|consen 229 NKVLENIKRRGNTDEI 244 (393)
T ss_pred HHHHHHHHhcCCCcce
Confidence 9999999999875543
No 118
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.36 E-value=1.7e-11 Score=90.98 Aligned_cols=102 Identities=23% Similarity=0.276 Sum_probs=59.3
Q ss_pred eEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhc-CCeEEcC
Q 030477 11 NILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQ-GGNIVDY 84 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~vid~ 84 (176)
+|+|+|+|||||||+|+.|++.+ | +.+++.|.+...... +.......+ .+.....++..+.. ..+|+|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~~~e~~~--~~~~~~~i~~~l~~~~~VI~D~ 75 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKEKYEEFI--RDSTLYLIKTALKNKYSVIVDD 75 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhHHhHHHH--HHHHHHHHHHHHhCCCeEEEec
Confidence 58999999999999999999987 3 344554444322111 111111111 12223344444443 3467775
Q ss_pred CCCC-CC--------CC-CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 85 HGCD-FF--------PE-RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 85 ~~~~-~~--------~~-~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
.... .+ .. .....+|||++|.+++.+|...|+.
T Consensus 76 ~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~ 118 (249)
T TIGR03574 76 TNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE 118 (249)
T ss_pred cchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence 3210 00 00 1234689999999999999988763
No 119
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.35 E-value=2.5e-11 Score=85.44 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=77.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcC-C
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQG-G 79 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~-~ 79 (176)
.++.+|+|+|+|||||||+++.|+..+ | +.+++.|.+.........+..+.....+ ..+. .+...+ ..+ .
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~--~~~~-~~a~~~~~~g~~ 78 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNI--RRIG-FVANLLTRHGVI 78 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHH--HHHH-HHHHHHHhCCCE
Confidence 356799999999999999999999987 2 5667876654332111111110000000 1111 122222 223 3
Q ss_pred eEEcCCCCC-----CCCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC---CcEEEe
Q 030477 80 NIVDYHGCD-----FFPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE---DIVLAL 150 (176)
Q Consensus 80 ~vid~~~~~-----~~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ 150 (176)
++++..... .+.. ...-.+|||++|++++.+|.. |+ ...... .+.+..++..+.+.|.+ +..+++
T Consensus 79 vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~-~~----l~~~~~-~~~i~~~~~~~~~~~~p~~ad~~i~~ 152 (175)
T PRK00889 79 VLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRDV-KG----LYAKAR-AGEIKHFTGIDDPYEPPLNPEVECRT 152 (175)
T ss_pred EEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCc-cc----HHHHHH-cCCCCCCcccCCCCCCCCCCcEEEEC
Confidence 445543210 0000 012358999999999999942 11 000000 00111122334455542 466666
Q ss_pred cCCCHHHHHHHHHHHHH
Q 030477 151 KSDTIEDITRNIAILTD 167 (176)
Q Consensus 151 ~~~s~~ev~~~i~~~~~ 167 (176)
+..+++++.+.+...+.
T Consensus 153 ~~~~~~~~~~~i~~~l~ 169 (175)
T PRK00889 153 DLESLEESVDKVLQKLE 169 (175)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 66688877777666654
No 120
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.34 E-value=5.2e-11 Score=82.39 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=93.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhccccc--------------chH--HHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVI--------------NED--LVCD 69 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~l~~ 69 (176)
|.++.+|++.|..+|||||.+..|.+.+ .+..+.....+.+......+.-...++. ..+ ...+
T Consensus 2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 2 MIRGALIVLEGLDRSGKSTQCGKLVESL-IPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCCccEEeeeccccCCceeehhHHHHHH-HhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 5688999999999999999999999987 3333334444554433333322222221 111 1233
Q ss_pred HHHHHh-hcCCeEEcCCC--------C------------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477 70 ELEDIM-EQGGNIVDYHG--------C------------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC 128 (176)
Q Consensus 70 ~i~~~~-~~~~~vid~~~--------~------------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~ 128 (176)
.|++-+ .+..+|+|... . .+++ .||+++||+++|+++.+| . ++..++.+....+
T Consensus 81 ~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~--KPDlvlfL~v~p~~~a~r-g--gfG~Erye~v~fq 155 (208)
T KOG3327|consen 81 LIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLP--KPDLVLFLDVSPEDAARR-G--GFGEERYETVAFQ 155 (208)
T ss_pred HHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCC--CCCeEEEEeCCHHHHHHh-c--CcchhHHHHHHHH
Confidence 444433 33446776311 1 1222 389999999999995554 3 3334555444434
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHHh
Q 030477 129 EIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVRN 171 (176)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~ 171 (176)
+.....+.... ......+..+|+. +.++|.+.|..+++.+..
T Consensus 156 ekv~~~~q~l~-r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 156 EKVLVFFQKLL-RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHHHHHHHH-hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence 43333333333 1222355566665 899999999999887644
No 121
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.34 E-value=1.5e-11 Score=88.04 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe---EeehhHHHhhcccCCC---chhhhcc-cccchHHHHHHHHHHhhcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR---HINIGELVREKNLHDG---WDDELEC-HVINEDLVCDELEDIMEQGG 79 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~---~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~l~~~i~~~~~~~~ 79 (176)
.+..+|.|.|++||||||+|+.|.+.++.. .++.|++......... ..-.+.. ..++.+.+.+.+..+..++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 344789999999999999999999999854 6788887664321110 0000110 11345677777777666555
Q ss_pred eEEc---CCC-------CCCCCC-----------------CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 80 NIVD---YHG-------CDFFPE-----------------RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 80 ~vid---~~~-------~~~~~~-----------------~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+.+. +.. ....|. ...++.||+++|.+++..|...|+.
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~ 150 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHH
Confidence 4331 100 000000 1367899999999999888776754
No 122
>PTZ00301 uridine kinase; Provisional
Probab=99.34 E-value=5.8e-11 Score=85.71 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=63.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc----C---CeEeehhHHHhhcccCCCchh---hhc-ccccchHHHHHHHHHHhh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST----Q---LRHINIGELVREKNLHDGWDD---ELE-CHVINEDLVCDELEDIME 76 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l----~---~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~i~~~~~ 76 (176)
+-.+|.|+|+|||||||+|+.|++++ | ..+++.|++............ .++ ...++.+.+.+.+..+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~ 81 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKS 81 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHc
Confidence 45789999999999999999998776 2 335666776543311110000 000 012234555555544333
Q ss_pred cCC------------------------e-EEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 77 QGG------------------------N-IVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 77 ~~~------------------------~-vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
++. + |+++...-..+ +...|+.||+++|.+++..|...|+.
T Consensus 82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred CCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhH
Confidence 211 1 22321110000 02467899999999999999888875
No 123
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.33 E-value=3.4e-12 Score=90.66 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=39.4
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccc-hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTN-NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNI 162 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i 162 (176)
.||++|||++|++++.+|+..|+.......+ ..........+..... ..+.++.+++. +++++.+.|
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~~--~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELAK--DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHHH--TTTTEEEEETTS-HHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHc--CCCCEEEEECCCCHHHHHhhC
Confidence 5899999999999999999988861111111 1112233333333333 23455666655 788887765
No 124
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.31 E-value=2.3e-11 Score=85.89 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=28.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVR 45 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~ 45 (176)
+.+|+|.||+||||||+++.|++.++..++......+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr 37 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTR 37 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceee
Confidence 3689999999999999999999977655554443333
No 125
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.30 E-value=8.6e-12 Score=85.42 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=53.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhc-CCeE
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQ-GGNI 81 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~v 81 (176)
++.+|||+|.|||||||+|++|.++| | ..+++.|.+.......-.+..+-+.-. -.-+..+..++.. +.++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~---~rr~~~~A~ll~~~G~iv 77 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREEN---IRRIAEVAKLLADQGIIV 77 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHH---HHHHHHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHH---HHHHHHHHHHHHhCCCeE
Confidence 46789999999999999999999987 3 456775554433222222221111000 0011223334433 3333
Q ss_pred E-cCCC---------CCCCCCCcccEEEEEeCChHHHHHHHh
Q 030477 82 V-DYHG---------CDFFPERWFDRVVVLQTENSVLYDRLT 113 (176)
Q Consensus 82 i-d~~~---------~~~~~~~~~~~vi~l~~~~~~~~~R~~ 113 (176)
| .... .+.++.. .-+.||++||.+++.+|-.
T Consensus 78 Iva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 78 IVAFISPYREDREWARELIPNE-RFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp EEE----SHHHHHHHHHHHHTT-EEEEEEEES-HHHHHHHTT
T ss_pred EEeeccCchHHHHHHHHhCCcC-ceEEEEeCCCHHHHHHhCc
Confidence 3 3211 1111111 1357999999999999953
No 126
>COG0645 Predicted kinase [General function prediction only]
Probab=99.30 E-value=4e-11 Score=82.13 Aligned_cols=107 Identities=19% Similarity=0.109 Sum_probs=71.2
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccch-------HHHHHHHHHHh-hcCCeE
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE-------DLVCDELEDIM-EQGGNI 81 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~i~~~~-~~~~~v 81 (176)
.++++.|.|||||||+++.|++.+|+..|..|.+....... +.....+..++.. +.+......++ .+.++|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~-p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGV-PEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCC-cccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 57899999999999999999999999999988876665431 1111111222321 22333333344 557899
Q ss_pred EcCCCCCCCCCC----------cccEEEEEeCChHHHHHHHhhcCC
Q 030477 82 VDYHGCDFFPER----------WFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 82 id~~~~~~~~~~----------~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+|........+. -.-..|.+.++.+++..|+..|..
T Consensus 81 lDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 81 LDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred EecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 997543222221 122468899999999999998874
No 127
>PRK06696 uridine kinase; Validated
Probab=99.28 E-value=1.3e-10 Score=84.94 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEe--ehhHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHI--NIGELVR 45 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~--~~~~~~~ 45 (176)
.++.+|.|+|++||||||+|+.|++.+ |.+++ +.|++..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 467899999999999999999999998 55554 4777653
No 128
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.28 E-value=4.7e-11 Score=96.37 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcCCeEEcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQGGNIVDYH 85 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~vid~~ 85 (176)
.++.+|+++|+|||||||+|+.++...|+.+++.|.+-. .+.+...++..+ .+..+|+|.+
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------~~~~~~~a~~~L~~G~sVVIDaT 428 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------TQNCLTACERALDQGKRCAIDNT 428 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------HHHHHHHHHHHHhCCCcEEEECC
Confidence 467899999999999999999999999999999887521 122344455444 5578999976
Q ss_pred CCCCCCCC----------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH
Q 030477 86 GCDFFPER----------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK 139 (176)
Q Consensus 86 ~~~~~~~~----------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 139 (176)
....-.+. .+-..+|+++|.+++.+|+..|...... ........+..+....+
T Consensus 429 n~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s-~~~vp~~v~~~~~k~fE 491 (526)
T TIGR01663 429 NPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSA-HIKIKDMVFNGMKKKFE 491 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcc-cCCCCHHHHHHHHhhCC
Confidence 53321111 1235789999999999999988652221 11222234555555544
No 129
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.28 E-value=2.3e-11 Score=86.24 Aligned_cols=102 Identities=17% Similarity=0.091 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGN 80 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~ 80 (176)
.++.+|+|+|+|||||||+++.|+..+ | ..+++.+++.........+......-.+ ..+......+.. +..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~V 93 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENI--RRIGEVAKLFVRNGIIV 93 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHH--HHHHHHHHHHHcCCCEE
Confidence 567899999999999999999999886 3 4567766554322111111110000000 112222222333 3445
Q ss_pred EEcCCCCC---------CCCCCcccEEEEEeCChHHHHHH
Q 030477 81 IVDYHGCD---------FFPERWFDRVVVLQTENSVLYDR 111 (176)
Q Consensus 81 vid~~~~~---------~~~~~~~~~vi~l~~~~~~~~~R 111 (176)
|+|..... ..+. ..-.+|||++|.+++.+|
T Consensus 94 I~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 94 ITSFISPYRADRQMVRELIEK-GEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred EEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCCHHHHHHh
Confidence 66653211 1111 123579999999999998
No 130
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.28 E-value=1.4e-10 Score=82.97 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=36.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK 47 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~ 47 (176)
++.+|+|+|+|||||||+|+.|++++|+.++..+|++++.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~ 41 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREF 41 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHH
Confidence 5679999999999999999999999999988888887765
No 131
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=99.27 E-value=2.2e-10 Score=83.41 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=78.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHH---HhhcCCeEEcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELED---IMEQGGNIVDYH 85 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~~~~~vid~~ 85 (176)
+.+|+|+|.+|||||+..+.| +.+|+.++|.=...--+. +.+.+.. ....-.+++|..
T Consensus 1 m~lvIVTGlSGAGKsvAl~~l-EDlGyycvDNLPp~Llp~------------------~~~~~~~~~~~~~kvAv~iDiR 61 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVL-EDLGYYCVDNLPPQLLPK------------------LADLMLTLESRITKVAVVIDVR 61 (286)
T ss_pred CcEEEEecCCCCcHHHHHHHH-HhcCeeeecCCCHHHHHH------------------HHHHHhhcccCCceEEEEEecc
Confidence 368999999999999999999 669988876311100000 0000000 001112222221
Q ss_pred CCCCCCC----------Cc--ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEec
Q 030477 86 GCDFFPE----------RW--FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALK 151 (176)
Q Consensus 86 ~~~~~~~----------~~--~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~ 151 (176)
....+.. .. .-.++||+++.+++.+|...-.+.+|......-.+... ..++...+..+ +.+|+++
T Consensus 62 s~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~-~ERelL~pLk~~A~~vIDTs 140 (286)
T COG1660 62 SREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIA-KERELLAPLREIADLVIDTS 140 (286)
T ss_pred cchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHH-HHHHHHHHHHHHhhhEeecc
Confidence 1111000 00 02489999999999999987666667665433111111 11111222222 5899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 030477 152 SDTIEDITRNIAILTD 167 (176)
Q Consensus 152 ~~s~~ev~~~i~~~~~ 167 (176)
..++.++.+.|...+.
T Consensus 141 ~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 141 ELSVHELRERIRTRFL 156 (286)
T ss_pred cCCHHHHHHHHHHHHc
Confidence 8999999999887764
No 132
>PHA00729 NTP-binding motif containing protein
Probab=99.25 E-value=1.1e-11 Score=89.58 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=70.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCe--EeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcC---C-eEE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLR--HINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQG---G-NIV 82 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~---~-~vi 82 (176)
...|+|+|+||+||||+|..|+++++.. .+..++. .+.......+++.+.+...+.....+. + +|+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~--------~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLII 88 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDD--------AWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIF 88 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhh--------HHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3579999999999999999999987522 2222221 122223445566677777776644331 3 477
Q ss_pred cCCCCCC----CC--------------CCcccEEEEEeCChHHHHHHHhhcCCCCccccch
Q 030477 83 DYHGCDF----FP--------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN 125 (176)
Q Consensus 83 d~~~~~~----~~--------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~ 125 (176)
|.-.... +. +.+.+.++++.++++.+.+|+..|++....+.++
T Consensus 89 Dd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~~kI~en 149 (226)
T PHA00729 89 DDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQIRVTMV 149 (226)
T ss_pred eCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcHHHhhhc
Confidence 7511100 01 1136678999999999999999999976655544
No 133
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.23 E-value=5.9e-10 Score=79.95 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=29.8
Q ss_pred eEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHHh
Q 030477 11 NILVTGTPGTGKTTTSTALAEST---QLRHINIGELVR 45 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~~ 45 (176)
+|.|+|++||||||+++.|+..+ +..+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 58899999999999999999877 467788887654
No 134
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.23 E-value=3.8e-10 Score=81.51 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHHhhccc---CCCchhhhc-ccccchHHHHHHHHHHhhcC-
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELVREKNL---HDGWDDELE-CHVINEDLVCDELEDIMEQG- 78 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~i~~~~~~~- 78 (176)
.++.+|.|+|++||||||+++.|+..++ ..+++.|+....... .......+. ...++.+.+.+.+..+..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~ 83 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSP 83 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCC
Confidence 4667899999999999999999998774 456776665322100 000000000 00112233444444433221
Q ss_pred ------------------------CeEEcCCCCCCCCC---CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 79 ------------------------GNIVDYHGCDFFPE---RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 79 ------------------------~~vid~~~~~~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
-+|+|+... ++.. ..++.+||+++|.+++..|...|..
T Consensus 84 v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~-~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~ 148 (207)
T TIGR00235 84 IDVPVYDYVNHTRPKETVHIEPKDVVILEGIMP-LFDERLRDLMDLKIFVDTPLDIRLIRRIERDI 148 (207)
T ss_pred EecccceeecCCCCCceEEeCCCCEEEEEehhh-hchHhHHHhCCEEEEEECChhHHHHHHHHHHH
Confidence 123342111 1111 1467899999999999999887754
No 135
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.22 E-value=1.5e-10 Score=86.50 Aligned_cols=105 Identities=19% Similarity=0.119 Sum_probs=55.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCC-eEE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGG-NIV 82 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~vi 82 (176)
|++|+|+|.|||||||+|+.|.+.+ + ..+++.+.+......+.....+ -.....+...+...+.... ||+
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~E----k~~R~~l~s~v~r~ls~~~iVI~ 76 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKE----KEARGSLKSAVERALSKDTIVIL 76 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGH----HHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhh----HHHHHHHHHHHHHhhccCeEEEE
Confidence 5799999999999999999998875 3 3445644443122111111100 0112345556666555544 455
Q ss_pred cCCC-CCCCCCC---------cccEEEEEeCChHHHHHHHhhcCC
Q 030477 83 DYHG-CDFFPER---------WFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 83 d~~~-~~~~~~~---------~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
|... ..+++.. ....+||+.+|.+.+.+|..+|..
T Consensus 77 Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 77 DDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp -S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred eCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence 6432 2222211 123689999999999999998874
No 136
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.21 E-value=3.2e-10 Score=80.44 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+++|+|+||+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999999886
No 137
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=96.48 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=78.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeE
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNI 81 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~v 81 (176)
++++|+++|+|||||||+|+.|++++ ++.+++.|++.........+..+.....+ ..+......... +..+|
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~--~~l~~~a~~~~~~G~~Vi 536 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENI--RRVAEVARLMADAGLIVL 536 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHH--HHHHHHHHHHHhCCCEEE
Confidence 68899999999999999999999987 35678866654422211111111100000 112222222222 23456
Q ss_pred EcCCCCC-----CCCC---CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC----CCcEEE
Q 030477 82 VDYHGCD-----FFPE---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP----EDIVLA 149 (176)
Q Consensus 82 id~~~~~-----~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~ 149 (176)
+|..... .+.. ...-.+|||++|.+++.+|.. |+ ...... .+.+..+...+.+ |. .+.+++
T Consensus 537 vda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~-r~----L~~~~~-~~~l~~l~~~r~~-y~~P~~a~~~Id 609 (632)
T PRK05506 537 VSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDP-KG----LYAKAR-AGEIKNFTGIDSP-YEAPENPELRLD 609 (632)
T ss_pred EECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCC-cc----hhhhcc-ccccccccccccC-CCCCCCCeEEEe
Confidence 6643211 0110 012368999999999999942 22 211100 1112223233333 33 135555
Q ss_pred ecCCCHHHHHHHHHHHHH
Q 030477 150 LKSDTIEDITRNIAILTD 167 (176)
Q Consensus 150 ~~~~s~~ev~~~i~~~~~ 167 (176)
++..+++++.+.+...+.
T Consensus 610 ~~~~s~~e~v~~Ii~~l~ 627 (632)
T PRK05506 610 TTGRSPEELAEQVLELLR 627 (632)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 555688877776666553
No 138
>PRK07667 uridine kinase; Provisional
Probab=99.17 E-value=4.2e-10 Score=80.44 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVRE 46 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~ 46 (176)
...+|.|+|++||||||+|+.|++.++ ..+++.|++...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 447899999999999999999999763 457888887543
No 139
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.1e-09 Score=74.48 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC----CeEeehhHHHhhcccC-C---Cch-hhh-----c-ccccch------HH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ----LRHINIGELVREKNLH-D---GWD-DEL-----E-CHVINE------DL 66 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~----~~~~~~~~~~~~~~~~-~---~~~-~~~-----~-~~~~~~------~~ 66 (176)
++.+|++.||+|+||-|+.......+. +.|+. --+.+..... + ... .++ . .+.+.. -.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr-RvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg 82 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR-RVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG 82 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEE-EEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence 578999999999999999999988773 22221 1111111111 0 000 000 0 000000 01
Q ss_pred HHHHHHHHhhcCCeEEcCCCCCCCCCC---cc-cEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC
Q 030477 67 VCDELEDIMEQGGNIVDYHGCDFFPER---WF-DRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY 142 (176)
Q Consensus 67 l~~~i~~~~~~~~~vid~~~~~~~~~~---~~-~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (176)
+-..|...+..+.+++-.-+...+|.. ++ -.++.|.++++++.+|+..|+++. .+ ++...+.+...-..
T Consensus 83 ip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGREs--~e-----eI~aRL~R~a~~~~ 155 (192)
T COG3709 83 IPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGRES--RE-----EILARLARAARYTA 155 (192)
T ss_pred CchhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhccCC--HH-----HHHHHHHhhccccc
Confidence 344555566667777755555555542 22 358999999999999999999732 11 23444443322222
Q ss_pred CCCcEEEecCC-CHHHHHHHHHH
Q 030477 143 PEDIVLALKSD-TIEDITRNIAI 164 (176)
Q Consensus 143 ~~~~~i~~~~~-s~~ev~~~i~~ 164 (176)
.+..+..++|. ..+..-+.+..
T Consensus 156 ~~~dv~~idNsG~l~~ag~~ll~ 178 (192)
T COG3709 156 GPGDVTTIDNSGELEDAGERLLA 178 (192)
T ss_pred CCCCeEEEcCCCcHHHHHHHHHH
Confidence 24567777765 44433333333
No 140
>PLN02348 phosphoribulokinase
Probab=99.14 E-value=8.2e-10 Score=85.72 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=63.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC--------------------eEeehhHHHhhccc---CCCchhhhcccccc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL--------------------RHINIGELVREKNL---HDGWDDELECHVIN 63 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~--------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 63 (176)
.++.+|.|.|++||||||+++.|++.+|. .++++|++...... ..... ..+....+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t-~ldP~a~d 125 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT-ALDPRANN 125 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc-cCCccccc
Confidence 45678889999999999999999998852 46788887532111 00100 00001112
Q ss_pred hHHHHHHHHHHhhcCC------------------------eEEcCCCCCCCC---CCcccEEEEEeCChHHHHHHHhhcC
Q 030477 64 EDLVCDELEDIMEQGG------------------------NIVDYHGCDFFP---ERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 64 ~~~l~~~i~~~~~~~~------------------------~vid~~~~~~~~---~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
-+.+.+.+..+..+.. +|++.... +++ +..+|+.||+++++++...|..+|.
T Consensus 126 fDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~-L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD 204 (395)
T PLN02348 126 FDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHP-MYDERVRDLLDFSIYLDISDDVKFAWKIQRD 204 (395)
T ss_pred HHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhh-ccCccccccCcEEEEEECCHHHHHHHHHHhh
Confidence 3445555554333221 22232110 111 1247889999999999877766665
Q ss_pred C
Q 030477 117 Y 117 (176)
Q Consensus 117 ~ 117 (176)
.
T Consensus 205 ~ 205 (395)
T PLN02348 205 M 205 (395)
T ss_pred H
Confidence 4
No 141
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.13 E-value=1.9e-10 Score=82.30 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=58.6
Q ss_pred eEEEECCCCCChHHHHHHHHHhcC---------CeEeehhHHHhhccc-------CCCchhhhcccccchHHHHHHHHHH
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQ---------LRHINIGELVREKNL-------HDGWDDELECHVINEDLVCDELEDI 74 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~---------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~i~~~ 74 (176)
+|.|+|++||||||+|+.|+..++ ..+++.|........ ...+.. .....++-+.+.+.+..+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNF-DHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSST-TSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCC-CCccccCHHHHHHHHHHH
Confidence 589999999999999999999886 235555654322211 011110 011123335555555554
Q ss_pred hhcCCe-------------------------EEcCCCCCCCC---CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 75 MEQGGN-------------------------IVDYHGCDFFP---ERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 75 ~~~~~~-------------------------vid~~~~~~~~---~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
..++.+ |+++.. .++. +..+|+.|||+++.+++..|...|+.
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~-~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~ 149 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIY-ALYDEELRDLFDLKIFLDADEDLRLERRIQRDV 149 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETT-TTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccc-eeeeeeecccceeEEEecccHHHHHHHHhhhhc
Confidence 333221 222111 1111 13468999999999998888776754
No 142
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.11 E-value=2.7e-10 Score=80.78 Aligned_cols=152 Identities=20% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhcccCCCchhhhcccccchHH--------------------
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREKNLHDGWDDELECHVINEDL-------------------- 66 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 66 (176)
+++.|+|+||+||||||+++.|.+.++-.+ .......+.+...+.-+.++ ++.+.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y--~fvs~~~f~~~~~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDY--HFVSKEEFERMIKAGEFIEYGEYDGNY 78 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSE--EE--HHHHHHHHHTTHEEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcce--EEEeechhhhhhccccEEEEeeecchh
Confidence 468999999999999999999998874322 22223333333222212111 1112221
Q ss_pred ---HHHHHHHHhh-cCCeEEcCC--CCCCCCC-CcccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477 67 ---VCDELEDIME-QGGNIVDYH--GCDFFPE-RWFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA 138 (176)
Q Consensus 67 ---l~~~i~~~~~-~~~~vid~~--~~~~~~~-~~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 138 (176)
....+..... +..+++|.. ....+.. ...-.+||+.++ .+++.+|+..|+.. ..+.. .+++......
T Consensus 79 YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~---~~~~i-~~r~~~~~~~- 153 (183)
T PF00625_consen 79 YGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDE---SEEEI-EERLERAEKE- 153 (183)
T ss_dssp EEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHC---HHHHH-HHHHHHHHHH-
T ss_pred hhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccc---cHHHH-HHHHHHHHHH-
Confidence 2233333333 334455421 1111111 112257888655 68888888766521 11111 1122222222
Q ss_pred HhcCCC-CcEEEecCCCHHHHHHHHHHHHHH
Q 030477 139 KESYPE-DIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 139 ~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
...+.. +.++ . +++.+++.+.+.++++.
T Consensus 154 ~~~~~~fd~vi-~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 154 FEHYNEFDYVI-V-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp HGGGGGSSEEE-E-CSSHHHHHHHHHHHHHH
T ss_pred HhHhhcCCEEE-E-CcCHHHHHHHHHHHHHh
Confidence 223322 3333 3 35788888888888763
No 143
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.09 E-value=9.2e-10 Score=75.50 Aligned_cols=101 Identities=20% Similarity=0.086 Sum_probs=54.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcC
Q 030477 11 NILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDY 84 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~ 84 (176)
+|+|+|+|||||||+++.|++.+ |. .+++.|.+.........+......-.+ ..+....+.+.. +..+|+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~--~~~~~~a~~l~~~G~~VIid~ 78 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENI--RRIAEVAKLLADAGLIVIAAF 78 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHH--HHHHHHHHHHHhCCCEEEEcc
Confidence 47899999999999999999988 53 455655544322111111110000000 112222222333 33456675
Q ss_pred CCCC---------CCCCCcccEEEEEeCChHHHHHHHhh
Q 030477 85 HGCD---------FFPERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 85 ~~~~---------~~~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
.... ... ...-.++||++|.+++.+|..+
T Consensus 79 ~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 79 ISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHhCch
Confidence 4311 111 1233579999999999999654
No 144
>PRK05439 pantothenate kinase; Provisional
Probab=99.08 E-value=1.1e-09 Score=83.21 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=63.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHHhhcc------cCCCchhhhcccccchHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELVREKN------LHDGWDDELECHVINEDLVCDELE 72 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~i~ 72 (176)
..++.+|.|+|+|||||||+|+.|++.++ ..+++.|++..... .....+. ...++.+.+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~---Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF---PESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCC---cccccHHHHHHHHH
Confidence 45678899999999999999999988653 34677777653221 1111110 11234455666665
Q ss_pred HHhhcCC-e--------------------------EEcCCCCCCCC--------CCcccEEEEEeCChHHHHHHHhhcC
Q 030477 73 DIMEQGG-N--------------------------IVDYHGCDFFP--------ERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 73 ~~~~~~~-~--------------------------vid~~~~~~~~--------~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
.+..+.. + |+++...-..+ ...+|+.||++++.+++.+|+.+|.
T Consensus 160 ~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~ 238 (311)
T PRK05439 160 DVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERF 238 (311)
T ss_pred HHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 5443322 1 11221100011 2246789999999999888776653
No 145
>PRK07429 phosphoribulokinase; Provisional
Probab=99.07 E-value=2.3e-09 Score=82.31 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=33.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELV 44 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~ 44 (176)
..++.+|.|+|++||||||+++.|++.++ ..+++.|++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 45677999999999999999999999886 5677888764
No 146
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.05 E-value=6.5e-10 Score=80.40 Aligned_cols=103 Identities=30% Similarity=0.465 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh----hc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM----EQ 77 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~ 77 (176)
++...++.|+||+||+|++..|++.+++++++++++++..... ...+.....+ +...+.+...+...+ ..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 4678899999999999999999999999999999999886442 2233222222 123344454554433 34
Q ss_pred CCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhc
Q 030477 78 GGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 78 ~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r 115 (176)
.++++| .+|+. ..+.||.|.+|.+.+.+|+..|
T Consensus 94 ~~~ild-----g~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r 138 (235)
T KOG3078|consen 94 KGFILD-----GFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGR 138 (235)
T ss_pred cccccC-----CCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcc
Confidence 678998 44442 4678999999999999999988
No 147
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.05 E-value=2.2e-09 Score=75.87 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=31.8
Q ss_pred eEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREK 47 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~ 47 (176)
+|.|+|+|||||||+|+.|++.+ +..+++.|++....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 58899999999999999999986 45788999988643
No 148
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.03 E-value=1.5e-09 Score=81.82 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELV 44 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~ 44 (176)
+.++.+|.|.|++||||||+++.|...+. +.+++.|.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 35678888999999999999998866552 3456666543
No 149
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.01 E-value=2.5e-09 Score=78.46 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|.|++||||||+++.|+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999876
No 150
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.01 E-value=1.9e-09 Score=78.56 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=27.6
Q ss_pred eEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHH
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELV 44 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~ 44 (176)
+|.|.|++||||||+++.|+..+. +.+++.|++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999998873 3456777664
No 151
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.01 E-value=2.1e-09 Score=82.62 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhcC------CeEeehhHHHhhcccCCCchhhhccccc-chHHHHHHHHHHh--hcCCeE
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQ------LRHINIGELVREKNLHDGWDDELECHVI-NEDLVCDELEDIM--EQGGNI 81 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~--~~~~~v 81 (176)
+++|+|+|||||||+++.|++.++ +.+++.|+++.........+......+. -.+.+.+.++..+ .++|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 478999999999999999998774 3488999988543221111111111110 1145555555533 335555
Q ss_pred EcCCC---CCCCCC-----CcccEEEEEeCChHHHHHHHhhcC
Q 030477 82 VDYHG---CDFFPE-----RWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 82 id~~~---~~~~~~-----~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
+..+. ...+++ ...+++|||++++++...|+..+.
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~ 123 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPA 123 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHH
Confidence 53210 011111 124578999999999999998544
No 152
>PLN02772 guanylate kinase
Probab=98.95 E-value=8.5e-09 Score=80.14 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=76.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccch----------------------
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINE---------------------- 64 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 64 (176)
+.+.|+|+||+|+|||||.+.|.+.+.. ..+......|.+...+.-+.++ ++.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY--~Fvs~eeFe~~i~~g~FlE~~e~~Gn~ 211 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHY--HFTERSVMEKEIKDGKFLEFASVHGNL 211 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceE--eeCCHHHHHHHHHhCccceeeeecCcc
Confidence 5579999999999999999999887632 2234444555554433322211 22221
Q ss_pred -HHHHHHHHHHhhc-CCeEEcC--CCCCCCCCCc-ccEEEEE-eCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477 65 -DLVCDELEDIMEQ-GGNIVDY--HGCDFFPERW-FDRVVVL-QTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA 138 (176)
Q Consensus 65 -~~l~~~i~~~~~~-~~~vid~--~~~~~~~~~~-~~~vi~l-~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 138 (176)
..-.+.++..+.. ..+|+|. .....+.... ...+||+ ..+.+++.+|+..|+...+ +.+ ..++.....+.
T Consensus 212 YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGtese---E~I-~kRL~~A~~Ei 287 (398)
T PLN02772 212 YGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETE---EQI-QKRLRNAEAEL 287 (398)
T ss_pred ccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCH---HHH-HHHHHHHHHHH
Confidence 1233334444433 3455542 1111111110 1233444 5568999999998875321 111 12444433322
Q ss_pred Hh-cCCC--CcEEEecCCCHHHHHHHHHHHH
Q 030477 139 KE-SYPE--DIVLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 139 ~~-~~~~--~~~i~~~~~s~~ev~~~i~~~~ 166 (176)
.. .+.. +.+ .+| .+.++..+++..++
T Consensus 288 ~~~~~~~~fD~v-IvN-DdLe~A~~~L~~iL 316 (398)
T PLN02772 288 EQGKSSGIFDHI-LYN-DNLEECYKNLKKLL 316 (398)
T ss_pred hhccccCCCCEE-EEC-CCHHHHHHHHHHHH
Confidence 21 1212 333 333 36777777776665
No 153
>COG4639 Predicted kinase [General function prediction only]
Probab=98.95 E-value=2e-08 Score=68.01 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh-hhccc-ccchHHHHHHHHHHhhc-CCeEEcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD-ELECH-VINEDLVCDELEDIMEQ-GGNIVDYH 85 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~i~~~~~~-~~~vid~~ 85 (176)
..++++.|+|||||||.++... ....+++++++-..... ..++ ..... ....+.+.+.++..+.. .-.|+|++
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~--~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt 77 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGV--SASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDAT 77 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhh--chhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 3588999999999999999863 46788999998665431 1111 11100 00124455555655544 45688876
Q ss_pred CCCCCCC----------CcccEEEEEeCChHHHHHHHhhcC
Q 030477 86 GCDFFPE----------RWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 86 ~~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
....-.+ .....+|+++.|...+.+|...|.
T Consensus 78 n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~ 118 (168)
T COG4639 78 NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE 118 (168)
T ss_pred cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence 5322111 134567999999999999987443
No 154
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-09 Score=87.95 Aligned_cols=112 Identities=17% Similarity=0.249 Sum_probs=68.9
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhhcc---------cCCCchhhhcccc-cch------
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVREKN---------LHDGWDDELECHV-INE------ 64 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~-~~~------ 64 (176)
..++.+++.|++.|||||||||+|++||...+..|++. .+++.... .|+........++ +++
T Consensus 462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~ 541 (693)
T KOG0730|consen 462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAG 541 (693)
T ss_pred HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhh
Confidence 35678999999999999999999999999998888765 22221110 1110001111111 121
Q ss_pred --------------HHHHHHHHHHhhcCCeEE-cC------CCCCCCCCCcccEEEEEeCChHHHHHHHhh
Q 030477 65 --------------DLVCDELEDIMEQGGNIV-DY------HGCDFFPERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 65 --------------~~l~~~i~~~~~~~~~vi-d~------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
.+++..|..+...+++++ -. -+.++++..++|.+||+..|..+.+.++.+
T Consensus 542 ~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 542 SRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred ccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence 233344443444455544 22 334566666789999999998887777754
No 155
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.90 E-value=3.9e-09 Score=75.78 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHHhhcccCCCchhhhcccc--c---chHHHHHHH-HHHh-h
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIGELVREKNLHDGWDDELECHV--I---NEDLVCDEL-EDIM-E 76 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~i-~~~~-~ 76 (176)
.+|.++++.|+|||||||++..+...+ ++.+++.|++......+........... . ....+...+ +..+ .
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 578899999999999999999998886 6788998887544332221111100000 0 011223322 2223 3
Q ss_pred cCCeEEcCCCCC---------CCCCC-cccEEEEEeCChHHHHHHHhhcC
Q 030477 77 QGGNIVDYHGCD---------FFPER-WFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 77 ~~~~vid~~~~~---------~~~~~-~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
+.++++|..... .+... ..-.++++.+|++....|...|-
T Consensus 93 ~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 93 RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 457888854321 11111 22357888999999999998773
No 156
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.90 E-value=5.6e-08 Score=73.36 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=31.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe-EeehhHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR-HINIGEL 43 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~-~~~~~~~ 43 (176)
.+|.+|+|+|++||||||+|..||+++|.. +++.|.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~ 127 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSI 127 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHH
Confidence 356789999999999999999999999997 5665444
No 157
>PRK15453 phosphoribulokinase; Provisional
Probab=98.89 E-value=2.3e-08 Score=74.60 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR 45 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~ 45 (176)
+.++++|+|+|.|||||||+++.|++.++ ..+++.|++.+
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 45789999999999999999999998663 56788887765
No 158
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.1e-09 Score=83.37 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=35.1
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG 41 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~ 41 (176)
+.+..+++.++|+||||||||.+|+++|.++|.+|++..
T Consensus 217 ~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 217 SLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred hcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 456778999999999999999999999999999998654
No 159
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-08 Score=76.18 Aligned_cols=30 Identities=43% Similarity=0.617 Sum_probs=27.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
.-.++|+++||||+|||++|++||+++...
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 457899999999999999999999999655
No 160
>PHA03132 thymidine kinase; Provisional
Probab=98.84 E-value=2.5e-08 Score=81.16 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=26.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
..+|+|.|+.||||||+++.|++.+|..++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi 286 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVL 286 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence 689999999999999999999998855544
No 161
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.84 E-value=2.8e-08 Score=74.66 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=28.6
Q ss_pred eEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHH
Q 030477 11 NILVTGTPGTGKTTTSTALAEST---QLRHINIGELV 44 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~ 44 (176)
+|.|+|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999998876 55678878764
No 162
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-08 Score=77.65 Aligned_cols=111 Identities=21% Similarity=0.294 Sum_probs=69.5
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhhcc---------cCCCchhhhccccc-ch------
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVREKN---------LHDGWDDELECHVI-NE------ 64 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~-~~------ 64 (176)
+.++.+|+-|+|.||||+|||.+|++.|...++.|+.. +++++... +|.-..+...++++ ++
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA 258 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc
Confidence 46778999999999999999999999999999988743 55544431 11111122222222 22
Q ss_pred --------------HHHHHHHHHH---hhcCCe-EE------cCCCCCCCCCCcccEEEEEeCChHHHHHHHh
Q 030477 65 --------------DLVCDELEDI---MEQGGN-IV------DYHGCDFFPERWFDRVVVLQTENSVLYDRLT 113 (176)
Q Consensus 65 --------------~~l~~~i~~~---~~~~~~-vi------d~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~ 113 (176)
..+++++.++ -..+++ || |.-+.++++...+|..|-+..|...-+..+.
T Consensus 259 kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il 331 (406)
T COG1222 259 KRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEIL 331 (406)
T ss_pred ccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHH
Confidence 1344444432 233443 33 3344567777788888888877776666654
No 163
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.80 E-value=2.4e-08 Score=67.27 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcccCCCchh-hhcccccchHHHHHHHHHHhhcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKNLHDGWDD-ELECHVINEDLVCDELEDIMEQGGN 80 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~ 80 (176)
+++..||++|.+||||||+|=+|.+.| |.. .++-|.+....+..-.|.. +....+. -...+.++++..++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIR----RigeVaKLFADag~ 104 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIR----RIGEVAKLFADAGV 104 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHH----HHHHHHHHHhccce
Confidence 578899999999999999999998876 332 2343333222221111211 1111111 12234445566665
Q ss_pred EEcCCC-----------CCCCCCCcccEEEEEeCChHHHHHHH
Q 030477 81 IVDYHG-----------CDFFPERWFDRVVVLQTENSVLYDRL 112 (176)
Q Consensus 81 vid~~~-----------~~~~~~~~~~~vi~l~~~~~~~~~R~ 112 (176)
|.-... .++++.. .-.-||.++|.+++.+|-
T Consensus 105 iciaSlISPYR~dRdacRel~~~~-~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 105 ICIASLISPYRKDRDACRELLPEG-DFIEVFMDVPLEVCEARD 146 (207)
T ss_pred eeeehhcCchhccHHHHHHhccCC-CeEEEEecCcHHHhhccC
Confidence 442211 2334443 224589999999999874
No 164
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-08 Score=84.42 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=67.1
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh--HHHhhc---------ccCCCchhhhccccc----------
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG--ELVREK---------NLHDGWDDELECHVI---------- 62 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~---------- 62 (176)
++..-|+-++|+||||||||.||+++|.+.|+||++.+ +++.-. .++.......+++++
T Consensus 339 lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~ 418 (774)
T KOG0731|consen 339 LGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRK 418 (774)
T ss_pred cCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccccc
Confidence 45567889999999999999999999999999998653 332211 001000001111110
Q ss_pred ------------chH---HHHHHHHHHhhcCCeEEc-------CCCCCCCCCCcccEEEEEeCChHHHHHHHhh
Q 030477 63 ------------NED---LVCDELEDIMEQGGNIVD-------YHGCDFFPERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 63 ------------~~~---~l~~~i~~~~~~~~~vid-------~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
.++ +++-.+.......++|+. .-+.++++..++|..|+++.|...=+..+.+
T Consensus 419 r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 419 RGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred ccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence 112 233333333444566663 2334566666789999999988776666654
No 165
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.75 E-value=1.1e-07 Score=70.13 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehh------HHHhhccc--CCCchhhhcccccchHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIG------ELVREKNL--HDGWDDELECHVINEDLVCDEL 71 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~i 71 (176)
+.+.+|.|+|++|+||||+|+.|+..+. +..+.+| ..+..... ..++.+ .|+...+++.+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe-----SyD~~~ll~fl 154 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE-----SYDVAALLRFL 154 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc-----cccHHHHHHHH
Confidence 4677899999999999999999987652 1122222 22222222 112222 23445555555
Q ss_pred HHHhhcCC-e--------------------------EEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 72 EDIMEQGG-N--------------------------IVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 72 ~~~~~~~~-~--------------------------vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
..+.++.. + |+++.. ...+--.++|+.||++++.+.+.+|+..|..
T Consensus 155 ~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 155 SDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred HHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 54432221 1 111100 0011112578999999999999999998854
No 166
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.73 E-value=7.3e-08 Score=68.07 Aligned_cols=105 Identities=13% Similarity=0.219 Sum_probs=59.1
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--------CCCchhhhc--ccc---------------cchH
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--------HDGWDDELE--CHV---------------INED 65 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~~---------------~~~~ 65 (176)
+|.|.+..|||++++|+.||++||+++++- +++..... ...+.+... .++ ...+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 588999999999999999999999999996 66554421 111222111 110 0112
Q ss_pred HHH----HHHHHHhhcCCeEEcCCCCCCCCCCcc-cEEEEEeCChHHHHHHHhhcC
Q 030477 66 LVC----DELEDIMEQGGNIVDYHGCDFFPERWF-DRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 66 ~l~----~~i~~~~~~~~~vid~~~~~~~~~~~~-~~vi~l~~~~~~~~~R~~~r~ 116 (176)
.+. +.+.++...+++|+.......+.+..+ .+-|+|.+|.+.+.+|+.++.
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRCANYILRDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTTHHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecCHhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 222 344445556677776544444443333 467999999999999999873
No 167
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.72 E-value=1.3e-07 Score=67.59 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=29.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~ 46 (176)
+.+++|.||+|+|||.+|-.||+++|+++++.|.+.-.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 46889999999999999999999999999998876433
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.71 E-value=1.7e-08 Score=67.26 Aligned_cols=28 Identities=50% Similarity=0.708 Sum_probs=25.6
Q ss_pred EEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 12 ILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
|+|+||||+||||+++.+++.++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 6899999999999999999999987754
No 169
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-08 Score=81.46 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.-|+-|+|+||||+|||.+|+++|-+.|+|||.+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 3578999999999999999999999999999865
No 170
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.67 E-value=7.4e-07 Score=70.87 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCe-EeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLR-HINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~-~~~~~~~ 43 (176)
++.+|+++|++||||||++..||..+|+. +++.|.+
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~i 290 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAV 290 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHH
Confidence 57899999999999999999999999997 4565554
No 171
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.67 E-value=2.1e-07 Score=69.02 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=29.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR 45 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~ 45 (176)
+|+|+|.+||||||+++.|++.++ ..+++.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998763 56788888776
No 172
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.65 E-value=3.8e-08 Score=58.52 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=21.2
Q ss_pred eEEEECCCCCChHHHHHHHHHhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l 33 (176)
+|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 173
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.65 E-value=1.8e-07 Score=76.21 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=30.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELV 44 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~ 44 (176)
...+|.|.|++||||||+++.|+..+ +...++.|++.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 45688899999999999999999887 44577777763
No 174
>PLN02165 adenylate isopentenyltransferase
Probab=98.62 E-value=5.2e-08 Score=74.48 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
.++.+|+|.||+||||||++..||+.++..+++.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3567899999999999999999999999999998876
No 175
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.61 E-value=6.9e-07 Score=64.14 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCC-eEE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGG-NIV 82 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~vi 82 (176)
|++|+|+|.|.|||||.|+.|.+.+ | ..++-.++..-....-+.++...+.- .-...+...+.+.+..+. ||+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK-~lRg~L~S~v~R~Lsk~~iVI~ 79 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEK-ALRGKLRSAVDRSLSKGDIVIV 79 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHH-HHHHHHHHHHHhhcccCcEEEE
Confidence 5899999999999999999998877 2 12222222221100001111100000 001234444444555444 555
Q ss_pred cC-CCCCCCCCC---------cccEEEEEeCChHHHHHHHhhcCCC
Q 030477 83 DY-HGCDFFPER---------WFDRVVVLQTENSVLYDRLTKRGYT 118 (176)
Q Consensus 83 d~-~~~~~~~~~---------~~~~vi~l~~~~~~~~~R~~~r~~~ 118 (176)
|. ....+|+-. -...|||..+|.+.+.+-...|...
T Consensus 80 DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p 125 (281)
T KOG3062|consen 80 DSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDP 125 (281)
T ss_pred ecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCC
Confidence 74 333344321 1125788899999998887665443
No 176
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.60 E-value=5.1e-08 Score=74.27 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
.++++|+|+||+||||||+|..|+++++..+++.|.+
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 3457999999999999999999999999999988873
No 177
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.7e-07 Score=75.90 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=32.0
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+...+..|+++||||||||.+|+++|.+.|+.|++.
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 445678999999999999999999999999888865
No 178
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=2.7e-06 Score=62.16 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=33.9
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~ 46 (176)
.|+++.+|+|-|+||.||||+|..||.+||...+-..|.+++
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE 126 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE 126 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence 356788999999999999999999999999987544444443
No 179
>PRK09087 hypothetical protein; Validated
Probab=98.55 E-value=4.1e-07 Score=66.60 Aligned_cols=106 Identities=15% Similarity=0.245 Sum_probs=61.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--CCCc--hhhhcccccchHHHHHHHHHHhhcC-CeEEc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--HDGW--DDELECHVINEDLVCDELEDIMEQG-GNIVD 83 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~~vid 83 (176)
.+.++|+|++||||||+++.+++..++.+++.+++...... .... -++.+..-.+...+++.+......+ .+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 46699999999999999999999999999987643332210 0000 0111111124466888888777644 45553
Q ss_pred CCC----CCC-CCC----CcccEEEEEeCChHHHHHHHhh
Q 030477 84 YHG----CDF-FPE----RWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 84 ~~~----~~~-~~~----~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
... ... .++ -....++-+..+.++.+..+.+
T Consensus 124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 321 111 111 1234677777776655444443
No 180
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.50 E-value=6.7e-07 Score=75.99 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=31.1
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+...+..|+|+||||||||++++++|..++++++..
T Consensus 483 g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 483 GIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 445677899999999999999999999998887754
No 181
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.47 E-value=1.2e-06 Score=73.62 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
+....+|++.|.||+||||+++.|++.+++.+++
T Consensus 212 ~~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~ 245 (664)
T PTZ00322 212 MMGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQ 245 (664)
T ss_pred cccceeEEecccCCCChhHHHHHHHHHHHhcCCC
Confidence 3455689999999999999999999998655443
No 182
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.47 E-value=1.6e-07 Score=63.43 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred eEEEECCCCCChHHHHHHHHHhcC
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
+|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999764
No 183
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=1.9e-07 Score=67.47 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
....++++||||+||||+|..+|+++|..+.
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 3568999999999999999999999987764
No 184
>PLN02840 tRNA dimethylallyltransferase
Probab=98.46 E-value=2e-07 Score=73.45 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
..++++|+|+||+||||||++..|+++++..+++.|.+
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 34667899999999999999999999999888887763
No 185
>PRK06893 DNA replication initiation factor; Validated
Probab=98.45 E-value=6.1e-07 Score=65.85 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=28.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~ 42 (176)
..+.++|+||||+|||+++++++..+ +..|++..+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 34678999999999999999999875 566777653
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=98.43 E-value=6.2e-07 Score=74.61 Aligned_cols=36 Identities=31% Similarity=0.547 Sum_probs=31.2
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+...++.++|.||||+|||++++++|.+++.+++..
T Consensus 212 g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 212 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 344577899999999999999999999999888754
No 187
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.43 E-value=2.7e-07 Score=72.51 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=31.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
.+..|+|.||||+||||+++.|++.++++++..+.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 35789999999999999999999999999988774
No 188
>PRK06761 hypothetical protein; Provisional
Probab=98.42 E-value=2.4e-07 Score=69.56 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=27.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIG 41 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~ 41 (176)
.++|+|+|+|||||||+++.|+++++...++.+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 468999999999999999999999875444433
No 189
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.42 E-value=4.2e-06 Score=60.85 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=32.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKN 48 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~ 48 (176)
.+-+|++.|.||.|||++|+.|+..| ...+|+.+++-|...
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~ 56 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLS 56 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccc
Confidence 34577889999999999999999876 346799999877654
No 190
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.9e-07 Score=74.16 Aligned_cols=37 Identities=38% Similarity=0.619 Sum_probs=33.0
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.++.|.-.|++.||||+|||-+|+++|-++...|++.
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence 4566778999999999999999999999999988875
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.41 E-value=3.1e-07 Score=74.12 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=32.5
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|.||||||||++|+++|..+|.+++..
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3456788999999999999999999999999888754
No 192
>PRK09169 hypothetical protein; Validated
Probab=98.39 E-value=2.5e-06 Score=77.60 Aligned_cols=134 Identities=8% Similarity=-0.045 Sum_probs=77.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhcccccchHHHHHHHHHHhhcCCeEEcC-
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVINEDLVCDELEDIMEQGGNIVDY- 84 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~- 84 (176)
...|+|.|++|+||||+++.|+.++++.+++.|..+...... ..+.... ++. +.-...+++.+. ..+||..
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FR--e~Eaa~V~Dllr-~~vVLSTG 2184 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSP--EQAAARVRDALR-WEVVLPAE 2184 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chH--HHHHHHHHHHhc-CCeEEeCC
Confidence 457899999999999999999999999999998877654321 1111111 222 122223333222 2333321
Q ss_pred -------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccc-hh-------HHHHHHHHHHHHHhcCCC--CcE
Q 030477 85 -------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN-NI-------ECEIFQVLLEEAKESYPE--DIV 147 (176)
Q Consensus 85 -------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~--~~~ 147 (176)
.....+.. .+++||+..+.+++.+|+... ...+.... +. ..+.+. .++.+.+.|.. +..
T Consensus 2185 GGav~~~enr~~L~~--~GlvV~L~an~~tl~~Rty~g-~NRPLL~~~~~~FEiQFHT~esl~-Lk~eRhpLYEqvADl~ 2260 (2316)
T PRK09169 2185 GFGAAVEQARQALGA--KGLRVMRINNGFAAPDTTYAG-LNVNLRTAAGLDFEIQFHTADSLR-TKNKTHKLYEKLQDLE 2260 (2316)
T ss_pred CCcccCHHHHHHHHH--CCEEEEEECCHHHHHHHhccC-CCCccccCCCCccchhccHHHHHH-HHHHhHHHHHHhcCcc
Confidence 11222222 457999999999999999643 22333222 11 123333 55667777765 344
Q ss_pred EEec
Q 030477 148 LALK 151 (176)
Q Consensus 148 i~~~ 151 (176)
+.+.
T Consensus 2261 V~~~ 2264 (2316)
T PRK09169 2261 VAPA 2264 (2316)
T ss_pred cccC
Confidence 4443
No 193
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.39 E-value=3.8e-07 Score=70.47 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHH
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGEL 43 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~ 43 (176)
+...+..++|.||||||||.+|++++.++|+.++ +.+++
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL 184 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGEL 184 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHh
Confidence 4567788889999999999999999999998876 44444
No 194
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.38 E-value=1.3e-06 Score=70.66 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=28.2
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
.+...++.|+|+||||||||+++++++..++..
T Consensus 211 ~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 211 YDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred ccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 345677889999999999999999999988543
No 195
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.36 E-value=7.4e-06 Score=59.13 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccC
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLH 50 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~ 50 (176)
++.-+-|+|+||+|+||+|+.+.|-++++. ..++.+.-.+.+...
T Consensus 34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~ 79 (231)
T KOG0707|consen 34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAG 79 (231)
T ss_pred CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcc
Confidence 344578999999999999999999999974 445555555555433
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.36 E-value=4.5e-07 Score=60.41 Aligned_cols=28 Identities=43% Similarity=0.573 Sum_probs=24.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
+..++|+|||||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5689999999999999999999988543
No 197
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.36 E-value=2.2e-06 Score=60.58 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVR 45 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~ 45 (176)
+|.-+|.|.|.+.|||||||+.|.+.+ |+..|+-||+..
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 355688899999999999999998877 677888887654
No 198
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.35 E-value=3.9e-07 Score=71.94 Aligned_cols=36 Identities=33% Similarity=0.460 Sum_probs=30.8
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.+...++.|+|+||||||||++|++++..++.+++.
T Consensus 160 ~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~ 195 (389)
T PRK03992 160 VGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 195 (389)
T ss_pred cCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE
Confidence 345677889999999999999999999999877653
No 199
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.2e-05 Score=56.58 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=29.2
Q ss_pred ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH
Q 030477 95 FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE 137 (176)
Q Consensus 95 ~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 137 (176)
.|.+|||.++|+++.+|+..|.++.+..-.-...+.+....+.
T Consensus 154 ~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~ 196 (244)
T KOG4235|consen 154 LDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHES 196 (244)
T ss_pred cceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHH
Confidence 5789999999999999999998755543322223334444333
No 200
>COG3911 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=5.8e-07 Score=60.53 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=30.4
Q ss_pred CCccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 1 MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 1 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
|+..+++++++++|+|.||+||||+..+|+. -|+..+
T Consensus 1 ~~~~~~nR~~~fIltGgpGaGKTtLL~aLa~-~Gfatv 37 (183)
T COG3911 1 VRVRPFNRHKRFILTGGPGAGKTTLLAALAR-AGFATV 37 (183)
T ss_pred CcccccccceEEEEeCCCCCcHHHHHHHHHH-cCceee
Confidence 4566677888999999999999999999976 466543
No 201
>PRK06620 hypothetical protein; Validated
Probab=98.34 E-value=1.6e-06 Score=63.02 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=26.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
+.++|+||+|||||++++++++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 568999999999999999999988876655
No 202
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.34 E-value=7.8e-07 Score=64.26 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREK 47 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~ 47 (176)
++|.|+|.|||||||+++.+.+ .|.++ +++.+.++..
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~ 38 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI 38 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence 4799999999999999999955 57777 8888876654
No 203
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.33 E-value=4.1e-07 Score=63.17 Aligned_cols=33 Identities=45% Similarity=0.581 Sum_probs=23.3
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~ 46 (176)
.|+|+|++||||||+++.|++. |++++ .+..+.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 4899999999999999999987 98887 444433
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.33 E-value=5.5e-07 Score=69.55 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=25.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
+.++++|+|||||||||+++.|+..++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5688999999999999999999998854
No 205
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=5.7e-07 Score=61.43 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..|+|+|+||+||||+++.+++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 206
>PLN02748 tRNA dimethylallyltransferase
Probab=98.33 E-value=7e-07 Score=71.46 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
+++++|+|+||+||||||++..||+.++..+++.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 466799999999999999999999999999999885
No 207
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.32 E-value=5.6e-07 Score=70.78 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=31.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
+..|+|+||||+||||+|+.|++.++++|+..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 5789999999999999999999999999887764
No 208
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.31 E-value=7.7e-07 Score=70.26 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=31.9
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|.||||||||+++++++..++..++..
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3456788999999999999999999999998877643
No 209
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.31 E-value=5e-05 Score=51.89 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=79.5
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHHhhcccC-----CCch------hhhcccc-cchHHHHH
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGELVREKNLH-----DGWD------DELECHV-INEDLVCD 69 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~~~~~~~-----~~~~------~~~~~~~-~~~~~l~~ 69 (176)
++|.+.++|+|-|.+.+|||++|.++-+-+..++. -.|.+....... ..+. .+....+ +....+.+
T Consensus 18 ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e 97 (205)
T COG3896 18 AGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE 97 (205)
T ss_pred cCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence 56788999999999999999999999776655544 444443322111 0100 0111111 11111111
Q ss_pred --------HHHHHhh-cCCeEEcCCC--CCCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477 70 --------ELEDIME-QGGNIVDYHG--CDFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ 132 (176)
Q Consensus 70 --------~i~~~~~-~~~~vid~~~--~~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 132 (176)
.|+.... +.+++.|.-. ...++. ...-..|=+.||.+++.+|-..|+...+-... .
T Consensus 98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG~~r-g------ 170 (205)
T COG3896 98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPGWNR-G------ 170 (205)
T ss_pred HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcchhh-h------
Confidence 1222222 2345665321 112222 12224677789999999998876543332211 1
Q ss_pred HHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHH
Q 030477 133 VLLEEAKESYPEDIVLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~ 166 (176)
..+.....-.-+.-++++..+|.|.+..|.+-+
T Consensus 171 -~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~ 203 (205)
T COG3896 171 -SARAVHADAEYDLEVDTSATTPHECAREIHERY 203 (205)
T ss_pred -hHHHhcCCcceeeeecccCCCHHHHHHHHHHHh
Confidence 111111111114456666679999888877644
No 210
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.30 E-value=7.2e-07 Score=60.23 Aligned_cols=27 Identities=44% Similarity=0.588 Sum_probs=25.0
Q ss_pred EEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 12 ILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
|+|.|+||+|||++++.|++.++.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999988774
No 211
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.30 E-value=1.8e-06 Score=63.56 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=28.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~ 43 (176)
..+.++|+||+|||||+++++++..+. +.|++.++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 346899999999999999999988763 456776653
No 212
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.3e-05 Score=60.71 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
|-++|+|+|+.|||||-|+--||.+++..+|+.|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 678999999999999999999999999999987754
No 213
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.30 E-value=7.4e-07 Score=67.19 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=30.4
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
+|+|+||+|||||+++..|++.++..+++.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 489999999999999999999999999998874
No 214
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.28 E-value=1.1e-06 Score=58.73 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=27.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
.++.+|+|.|+.||||||+++.+++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 456799999999999999999999999864
No 215
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.4e-06 Score=63.81 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=32.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
.+.+-|++.||||+|||.||+++|.+.|..||+.+.
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 466889999999999999999999999999987554
No 216
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.4e-06 Score=71.26 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=31.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
..=|+.+++.||||+|||.+|++.|-+.+.||++.
T Consensus 180 akiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i 214 (596)
T COG0465 180 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 214 (596)
T ss_pred cccccceeEecCCCCCcHHHHHHHhcccCCCceec
Confidence 34478899999999999999999999999998755
No 217
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.26 E-value=1.1e-06 Score=71.62 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=31.2
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+...++.++|+||||||||+++++|+..++.+++..
T Consensus 84 g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 84 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 345667899999999999999999999999888754
No 218
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.25 E-value=1.4e-06 Score=68.24 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=30.6
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+...++.++|+||||||||+++++++..++..++..
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 345677899999999999999999999998877643
No 219
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.24 E-value=1.4e-06 Score=61.05 Aligned_cols=27 Identities=37% Similarity=0.454 Sum_probs=24.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
++|+|+|+|||||||+|..|+.+++.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence 479999999999999999999987643
No 220
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=6.6e-06 Score=68.08 Aligned_cols=38 Identities=39% Similarity=0.629 Sum_probs=33.6
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+.+.+....|++.||||||||.++.+++...+..|++.
T Consensus 695 ~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv 732 (952)
T KOG0735|consen 695 NCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV 732 (952)
T ss_pred hCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe
Confidence 34566778999999999999999999999999999875
No 221
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.6e-06 Score=62.18 Aligned_cols=39 Identities=31% Similarity=0.522 Sum_probs=31.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVRE 46 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~ 46 (176)
+.+-|+|.||||+|||.||+++|-+.+-.||+. +|++..
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 457899999999999999999999998777644 555443
No 222
>PF13173 AAA_14: AAA domain
Probab=98.22 E-value=1.9e-06 Score=57.47 Aligned_cols=36 Identities=36% Similarity=0.436 Sum_probs=29.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcC----CeEeehhHHH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQ----LRHINIGELV 44 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~----~~~~~~~~~~ 44 (176)
.++++|+||.|+||||+++.+++++. +.+++.++..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 57899999999999999999998864 5666666543
No 223
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2e-06 Score=65.14 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
++++|+|+||.|||||-+|-.||+++|..+++.|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 578999999999999999999999999999998875
No 224
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.21 E-value=1.3e-06 Score=66.84 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=28.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
..+.|+|.|+||+||||+++.||+.+|++++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3567999999999999999999999998886
No 225
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.21 E-value=1.9e-06 Score=68.75 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=30.8
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.+...+..++|+||||||||+++++++..++..++.
T Consensus 212 ~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 212 IGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 345677889999999999999999999999877764
No 226
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.20 E-value=1.5e-06 Score=67.34 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=30.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
+....++.||||+||||+|+.||..+++.|.-.+.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 45678999999999999999999999988875543
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=98.20 E-value=6.6e-06 Score=60.58 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=29.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVR 45 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~ 45 (176)
..++|+|++|+|||+++++++..+ .+.|++.+++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 578999999999999999997543 566788877654
No 228
>PHA03136 thymidine kinase; Provisional
Probab=98.20 E-value=7.4e-06 Score=63.52 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=24.5
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCc
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGA 120 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~ 120 (176)
.+|.+|||+++++++.+|+.+|+++.+
T Consensus 191 ~pD~IIyL~l~~e~~~~RI~kRgR~~E 217 (378)
T PHA03136 191 HGGNIVIMDLDECEHAERIIARGRPGE 217 (378)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 367899999999999999999998766
No 229
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=2.2e-06 Score=57.51 Aligned_cols=26 Identities=46% Similarity=0.700 Sum_probs=23.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|+|+||+||||+++.+++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999987
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.18 E-value=2e-06 Score=64.36 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=27.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
.+..|+|.|+||+|||++|+.|++.+|.+++
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567889999999999999999999988776
No 231
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.17 E-value=2.4e-06 Score=69.49 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=27.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
+.++++|+||+||||||..+.||+++|+.+.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 4568899999999999999999999988665
No 232
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.16 E-value=2.1e-06 Score=68.06 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=29.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIG 41 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~ 41 (176)
...|+|.||||||||++|+.|++.++.+++..+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 467999999999999999999999998887544
No 233
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.6e-06 Score=66.53 Aligned_cols=35 Identities=40% Similarity=0.603 Sum_probs=31.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+.+++.|++.||||+|||.+|+++|++.|..|++.
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 35778999999999999999999999999988764
No 234
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.15 E-value=3.3e-06 Score=64.11 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=32.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
|..+++|+|+||.|||||.+|-.||++ +..++++|..
T Consensus 1 ~~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 1 MKENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 445679999999999999999999999 5588988864
No 235
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.15 E-value=6.1e-05 Score=51.88 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=29.2
Q ss_pred EEEECCCCCChHHHHHHHHHhcC-CeEeehhHHHh
Q 030477 12 ILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVR 45 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l~-~~~~~~~~~~~ 45 (176)
|+=.+.+||||||++.+|+.-+| +.++..|++..
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~ 36 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG 36 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC
Confidence 44578999999999999999999 99998888744
No 236
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.15 E-value=2.3e-06 Score=64.04 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|+|||||||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999864
No 237
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=98.14 E-value=1.7e-05 Score=61.53 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYH 85 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~ 85 (176)
.+..++++.|+.|||||++...|.+ .|..++|+......... +...+..-.....-++.+...+...-....++++.+
T Consensus 139 ~~~~~ivl~G~TGsGKT~iL~~L~~-~~~~vlDlE~~aehrGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~E 217 (345)
T PRK11784 139 AQFPLVVLGGNTGSGKTELLQALAN-AGAQVLDLEGLANHRGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDE 217 (345)
T ss_pred ccCceEecCCCCcccHHHHHHHHHh-cCCeEEECCchhhhccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEec
Confidence 3456788999999999999999965 48889998887766532 111111111111112445555544334456777655
Q ss_pred CCC----CCCCC-----cccEEEEEeCChHHHHHHHhhcCC
Q 030477 86 GCD----FFPER-----WFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 86 ~~~----~~~~~-----~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+.. .+|.. ....+|++++|.+.+.+|+.+ .|
T Consensus 218 s~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~l~~-~Y 257 (345)
T PRK11784 218 SRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVERLLE-DY 257 (345)
T ss_pred cccccCccCCHHHHHHHhhCCEEEEECCHHHHHHHHHH-Hh
Confidence 432 23321 233589999999999999974 44
No 238
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.14 E-value=1e-05 Score=58.59 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
...++.+.|+|||||||++.+++...+
T Consensus 118 ~~~l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 118 NEELTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred chheeeeecCCCCcchhHHHHHHhhcc
Confidence 457899999999999999999988653
No 239
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.12 E-value=2.6e-06 Score=76.99 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=34.6
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHH
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGELV 44 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~ 44 (176)
.+...++.|+|.||||||||.+|++||.+.+++++ +.++++
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 34567889999999999999999999999999886 445555
No 240
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.12 E-value=3.1e-06 Score=59.18 Aligned_cols=27 Identities=30% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++++.|+|++||||||+++.|...+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 456799999999999999999998776
No 241
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.11 E-value=2.9e-06 Score=59.29 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=20.6
Q ss_pred eEEEECCCCCChHHHHHHHHHhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l 33 (176)
.|+|||+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 242
>PF13245 AAA_19: Part of AAA domain
Probab=98.10 E-value=4.1e-06 Score=50.65 Aligned_cols=25 Identities=48% Similarity=0.664 Sum_probs=18.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..++.+|.|||||||||++..++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999554444443
No 243
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.10 E-value=3e-06 Score=62.46 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=29.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.|+.|++.||||+|||.+|++||.+...+++..
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 468999999999999999999999998888754
No 244
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.10 E-value=3.9e-06 Score=66.41 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=28.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
...|+|.||||+|||++|+.|++.++.++...
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 35799999999999999999999998887643
No 245
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=3.3e-06 Score=64.76 Aligned_cols=105 Identities=20% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh--HHHhhcccCCCch-hhhcccccchHHHHHHHHHHhhcCCeE
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG--ELVREKNLHDGWD-DELECHVINEDLVCDELEDIMEQGGNI 81 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~v 81 (176)
++.-||++|.+|+||||++-+|.+.+ |++++.+| .+.......-.+. ++....+. -...+.++++..|.|
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenir----riaevaklfadaglv 124 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIR----RIAEVAKLFADAGLV 124 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHH----HHHHHHHHHhcCCce
Confidence 45689999999999999999997654 77776553 3322222111121 11111111 112233455555543
Q ss_pred EcCCCCCCCCC------------CcccEEEEEeCChHHHHHHHhhcC
Q 030477 82 VDYHGCDFFPE------------RWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 82 id~~~~~~~~~------------~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
.-.....-|.. ..+-+-||++++..++.+|--+.-
T Consensus 125 citsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~l 171 (627)
T KOG4238|consen 125 CITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGL 171 (627)
T ss_pred eeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHH
Confidence 31111111111 112356889999999999865443
No 246
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.2e-06 Score=68.11 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=32.0
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG 41 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~ 41 (176)
+...++.++|.||||||||++|+++|..++.+|++.+
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence 4567779999999999999999999998888887543
No 247
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.6e-06 Score=66.98 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=28.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+..+|.|||||||||+..++|..|++.++++
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 46789999999999999999999999888755
No 248
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.09 E-value=3.8e-06 Score=66.40 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=27.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
-.+.|+|+|++|||||||++.|++.+|..++
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 3578999999999999999999999988754
No 249
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.09 E-value=4.4e-06 Score=63.78 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRH 37 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~ 37 (176)
++..++|+||||+||||+++.++..++..+
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 456789999999999999999999987654
No 250
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.08 E-value=2.7e-06 Score=54.96 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.5
Q ss_pred EEEECCCCCChHHHHHHHHHhc
Q 030477 12 ILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l 33 (176)
|+|.|+||+|||++++.|+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998876
No 251
>PF05729 NACHT: NACHT domain
Probab=98.07 E-value=3.7e-06 Score=58.01 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++++|+|++|+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 478999999999999999999876
No 252
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.07 E-value=5e-06 Score=53.43 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=27.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELV 44 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~ 44 (176)
.+...+.|.|++||||||+++.+. -|-..+..+++.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 456789999999999999999997 333445545543
No 253
>PHA02244 ATPase-like protein
Probab=98.07 E-value=4e-06 Score=65.08 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
....|+|.||+|||||++++.|+..+|.+++..+.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 456789999999999999999999999998866543
No 254
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.06 E-value=4.9e-06 Score=64.28 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=27.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
.+..++|+||||+||||+++.+++.++..+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4568999999999999999999999987553
No 255
>PRK04195 replication factor C large subunit; Provisional
Probab=98.05 E-value=4.8e-06 Score=67.59 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=28.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
++.++|+||||+||||++++|++.+|+.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 67899999999999999999999998877543
No 256
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=98.05 E-value=1.3e-06 Score=59.65 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=40.7
Q ss_pred ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH-HHHHHHHhcCCCC--cEEEecCCCHHHHHHHHHHHH
Q 030477 95 FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ-VLLEEAKESYPED--IVLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 95 ~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~i~~~~~s~~ev~~~i~~~~ 166 (176)
|+++|||++|++++.+|+.+||++.+..-.....+.+. ..+..+...+... .+++.+..+..+..+.+..++
T Consensus 68 pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~ 142 (146)
T PF01712_consen 68 PDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVI 142 (146)
T ss_dssp -SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHH
Confidence 57999999999999999999998665333333334455 4444444445443 344444323444444444444
No 257
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.05 E-value=2.4e-06 Score=56.52 Aligned_cols=28 Identities=46% Similarity=0.659 Sum_probs=20.7
Q ss_pred EEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 12 ILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
|+|.|+||+||||+++.||+.+|..|-.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 7899999999999999999999877643
No 258
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.05 E-value=2.3e-05 Score=65.76 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=29.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
-++.|+|.||||+||||+++.++..++.+++..
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 356699999999999999999999999887654
No 259
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.04 E-value=4.7e-06 Score=57.62 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.++-.|.|+||+||||||+.+.++.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 5677999999999999999999977
No 260
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=98.04 E-value=4.5e-06 Score=55.06 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=25.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
.++.+|+|.|+-||||||++|.+++.+|..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 466799999999999999999999999764
No 261
>PLN02796 D-glycerate 3-kinase
Probab=98.03 E-value=5.6e-06 Score=63.76 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=29.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELV 44 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~ 44 (176)
++.+|.|.|++||||||+++.|...+. ...++.|++.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 567788999999999999999988773 3446666653
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.03 E-value=9e-06 Score=59.50 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVR 45 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~ 45 (176)
....++|+|++|||||+++++++..+ .+.+++..+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 45689999999999999999998876 566777766543
No 263
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.03 E-value=7.1e-06 Score=59.83 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVR 45 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~ 45 (176)
..+..++|+|++||||||+++.++..+ .+.+++++++..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 456789999999999999999998765 345677666543
No 264
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=4.7e-06 Score=59.78 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALA 30 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La 30 (176)
..++-+++|+||+||||||+.+.|-
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999999999993
No 265
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.02 E-value=6.4e-06 Score=65.60 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+.+.++|+||||+||||+++.|++.++..++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 445789999999999999999999987776543
No 266
>CHL00181 cbbX CbbX; Provisional
Probab=98.02 E-value=6.1e-06 Score=62.55 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++..++|.|||||||||+|+.+++.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998865
No 267
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.01 E-value=6.7e-06 Score=57.62 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=29.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCC----eE--eehhHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQL----RH--INIGELVR 45 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~----~~--~~~~~~~~ 45 (176)
+...++++||+|+|||.+++.|++.+.. ++ +++.++..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 3457889999999999999999999874 43 56555544
No 268
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.01 E-value=6.6e-06 Score=70.04 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=30.8
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+...+..|+|+|||||||||+++.++..++.+++..
T Consensus 208 gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 445678899999999999999999999998877643
No 269
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.01 E-value=9.8e-06 Score=57.19 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKN 48 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~ 48 (176)
.+...++|.|++|+|||++|.+++.++ .+.|++..+++....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 456789999999999999999998765 356788888877654
No 270
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.6e-06 Score=68.48 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=30.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.++++++|.||||+|||++++.+|+.+|-.|+.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 478999999999999999999999999887764
No 271
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.99 E-value=6.1e-06 Score=55.75 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
++.|+|.|++|||||||+++|-..
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 478999999999999999999553
No 272
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.99 E-value=7.7e-06 Score=63.08 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
...|+|.|++||||||+++.|+..+|.+++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4689999999999999999999998988753
No 273
>PRK08727 hypothetical protein; Validated
Probab=97.98 E-value=1.2e-05 Score=59.24 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELV 44 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~ 44 (176)
..++|+|++|||||+++++++..+ |. .|++..+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 459999999999999999997654 33 566666543
No 274
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.98 E-value=7.7e-06 Score=67.79 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=30.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+.++.+|+||||.||||||..+|+..||.++..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 3457888999999999999999999999999744
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.97 E-value=5.3e-05 Score=56.30 Aligned_cols=43 Identities=33% Similarity=0.335 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKN 48 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~ 48 (176)
..++..|++.|+.||||||+++.|-..+. -.++++|..+++..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vp 63 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVP 63 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCC
Confidence 45788999999999999999999987762 34578777766553
No 276
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.97 E-value=1e-05 Score=61.34 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
...++|+|||||||||+|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4479999999999999998888765
No 277
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.97 E-value=5.8e-06 Score=54.98 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=20.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+...++|+|++|+|||++++.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999976
No 278
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.97 E-value=1e-05 Score=55.18 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
...-|+|+|++|+||||++..|.++ |..++. ||
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lva-DD 45 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVA-DD 45 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEE-CC
Confidence 3568999999999999999999774 777776 54
No 279
>PHA03135 thymidine kinase; Provisional
Probab=97.96 E-value=0.00036 Score=53.58 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=23.8
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.+..--.|.|.|+.|+||||+++.|++.
T Consensus 5 ~~~~~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 5 MTSAQLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred cCCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 33445567889999999999999999885
No 280
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=8.2e-06 Score=65.66 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=28.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
+..+.+|+||+||||||..+.|++.+|+.++.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 45689999999999999999999999988763
No 281
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.95 E-value=6e-06 Score=63.80 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=27.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC--CeEe--ehhHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ--LRHI--NIGEL 43 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~--~~~~~ 43 (176)
..++.|+|.||||||||.+|-.+|++|| .||. +.+++
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 3578999999999999999999999996 5664 44444
No 282
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=3e-05 Score=65.24 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
...++|+|++|+||||+++.|++.+++
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 446789999999999999999999865
No 283
>PRK06526 transposase; Provisional
Probab=97.94 E-value=9.2e-06 Score=60.51 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=28.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVRE 46 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~ 46 (176)
.+..++|+||||+|||+++..|+..+ |.. +++..+++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 45789999999999999999998764 333 3444444433
No 284
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.93 E-value=9.8e-06 Score=58.89 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
..++-++.|.||+||||||+...|+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35778999999999999999999965
No 285
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.93 E-value=1.2e-05 Score=53.04 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..||.++.+.|++|+|||.+++.||+.+
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4566677799999999999999999985
No 286
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.92 E-value=7.3e-06 Score=60.46 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=21.4
Q ss_pred EECCCCCChHHHHHHHHHhcC-----CeEeehhHH
Q 030477 14 VTGTPGTGKTTTSTALAESTQ-----LRHINIGEL 43 (176)
Q Consensus 14 l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~ 43 (176)
|+||+||||||+++.+.+.+. ..++++|.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 689999999999999998762 334555543
No 287
>PRK12377 putative replication protein; Provisional
Probab=97.92 E-value=2.1e-05 Score=58.35 Aligned_cols=38 Identities=21% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVRE 46 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~ 46 (176)
...++|+|+||+|||+++.+++..+ |. .+++..+++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 4679999999999999999999887 33 45666666554
No 288
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.91 E-value=0.00045 Score=58.99 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=28.3
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeE--eehhHHHh
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRH--INIGELVR 45 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~--~~~~~~~~ 45 (176)
.++++||+|+|||++|+.||+.++..+ ++.+++..
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 578999999999999999999997654 45555433
No 289
>PRK08181 transposase; Validated
Probab=97.91 E-value=1.8e-05 Score=59.33 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREK 47 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~ 47 (176)
+...++|+||+|+|||+++.+++..+ | +.|++..+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 45679999999999999999998754 4 5567777766543
No 290
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.91 E-value=1.6e-05 Score=45.84 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.6
Q ss_pred CeEEEECCCCCChHHHHHHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~ 31 (176)
...+|+|+.||||||+..++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999844
No 291
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=1.1e-05 Score=59.01 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.++-++.|.||+||||||+.+.+|.-
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999874
No 292
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.90 E-value=1.3e-05 Score=63.18 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELV 44 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~ 44 (176)
++.+|.|.|++||||||+++.|...+. ...++.|++.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 567888999999999999999976552 4456767654
No 293
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.90 E-value=1.1e-05 Score=60.06 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=25.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRH 37 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~ 37 (176)
.-.+++.||||.||||+|..+|.++|..+
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 44799999999999999999999997654
No 294
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.89 E-value=9.1e-06 Score=59.94 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..+|.|+||||+||||+...|...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 295
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.89 E-value=2e-05 Score=60.92 Aligned_cols=25 Identities=48% Similarity=0.795 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+.++|+||||+||||+++.+++.+
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999987
No 296
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.89 E-value=9.5e-06 Score=57.09 Aligned_cols=27 Identities=41% Similarity=0.567 Sum_probs=18.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++|+|++|+|||++.+.+.+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988876
No 297
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.89 E-value=1.2e-05 Score=57.67 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=21.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
-+|+|+||+||||||++..|...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3789999999999999999887763
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.88 E-value=1.4e-05 Score=61.56 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999987765
No 299
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.88 E-value=1.5e-05 Score=59.68 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
+..++|+|++|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998874
No 300
>PRK10646 ADP-binding protein; Provisional
Probab=97.88 E-value=2e-05 Score=53.90 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..+.+|+|.|.-||||||++|.|++.+|.
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45668999999999999999999999986
No 301
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.4e-05 Score=58.90 Aligned_cols=44 Identities=34% Similarity=0.438 Sum_probs=34.6
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee--hhHHHhh
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN--IGELVRE 46 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~--~~~~~~~ 46 (176)
|-++-+++.+++.||||||||.++++.|.+.-+.|+. .++++..
T Consensus 183 qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 183 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred HhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 4566788999999999999999999999987666653 3555443
No 302
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.88 E-value=0.00089 Score=58.05 Aligned_cols=36 Identities=42% Similarity=0.547 Sum_probs=28.8
Q ss_pred eEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhh
Q 030477 11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVRE 46 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~ 46 (176)
.++++||+|+|||.+|+.|++.+ .+..++++++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 58899999999999999999987 2345677766543
No 303
>PRK09183 transposase/IS protein; Provisional
Probab=97.87 E-value=2.1e-05 Score=58.82 Aligned_cols=38 Identities=29% Similarity=0.479 Sum_probs=28.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELV 44 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~ 44 (176)
.++..++|.||+|+|||+++.+|+..+ |. .+++..++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 456689999999999999999997653 43 345555544
No 304
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.87 E-value=1.3e-05 Score=61.67 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+.++-+++|.||+||||||+.+.+|-
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35678999999999999999999977
No 305
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.87 E-value=6.5e-05 Score=54.78 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=28.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc-------CCeEeehhHHHhh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST-------QLRHINIGELVRE 46 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l-------~~~~~~~~~~~~~ 46 (176)
...++|+|++|+|||+|.++++.++ .+.+++.+++...
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 3468999999999999999998764 2456777666443
No 306
>PLN03025 replication factor C subunit; Provisional
Probab=97.87 E-value=1.5e-05 Score=61.36 Aligned_cols=26 Identities=50% Similarity=0.823 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+.++|+||||+||||+++.+++.+
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999999986
No 307
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00026 Score=59.95 Aligned_cols=38 Identities=34% Similarity=0.500 Sum_probs=31.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREK 47 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~ 47 (176)
...++.||+|+|||-+|+.||+.+. ...||++++...-
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 4677899999999999999999873 5668999887664
No 308
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.8e-05 Score=58.69 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=33.4
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.++.+++-|++.||||+|||.+|+++|.+.+++|+..
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirv 242 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRV 242 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEee
Confidence 4567889999999999999999999999999998754
No 309
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.4e-05 Score=66.18 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=30.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.++++++++||||.|||++++.+|..+|-.||.
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence 478999999999999999999999999877753
No 310
>PHA02624 large T antigen; Provisional
Probab=97.86 E-value=2.3e-05 Score=64.29 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+.++...++|.|||||||||++..|.+-+|..+++.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 346778999999999999999999999997667664
No 311
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.85 E-value=1.6e-05 Score=68.05 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=28.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
+++.++|.||||+||||+++.|++.++.+++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 55689999999999999999999999877753
No 312
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.85 E-value=1.7e-05 Score=55.91 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++-+++|+||+||||||+.+.|....
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3567799999999999999999997654
No 313
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.85 E-value=2.1e-05 Score=55.12 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=25.3
Q ss_pred eEEEECCCCCChHHHHHHHHHhc---CC--eEeehhH
Q 030477 11 NILVTGTPGTGKTTTSTALAEST---QL--RHINIGE 42 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~ 42 (176)
+++++|+||+||||++..++..+ |. .+++.|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 68899999999999999998875 43 3466553
No 314
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.83 E-value=0.00096 Score=49.85 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
.+.+|+|.|..||||..+.+.|.+.++
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lD 81 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVN 81 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcC
Confidence 367888999999999999999999884
No 315
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.83 E-value=0.001 Score=57.58 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=25.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHH
Q 030477 11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIGEL 43 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~ 43 (176)
.++++||+|+|||++|+.||+.+ .+..++.+++
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~ 578 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY 578 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence 56799999999999999999986 2334555554
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.83 E-value=1.8e-05 Score=56.23 Aligned_cols=27 Identities=44% Similarity=0.610 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+...++|+|++||||||+.+.|...+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998765
No 317
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=1.7e-05 Score=64.00 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..++|+||||+||||+|+.+++.+++
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45899999999999999999998764
No 318
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.82 E-value=2.7e-05 Score=52.74 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=26.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..+-+|+|.|.-||||||++|.+++.+|.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 56789999999999999999999999975
No 319
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.82 E-value=2.5e-05 Score=56.40 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhH
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGE 42 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~ 42 (176)
++.++.++.|+|+||||||+++..++... | +.+++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45678899999999999999999988653 3 55666653
No 320
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.82 E-value=0.00076 Score=49.41 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
.+.+|+|.|..||||..+.+.|.+.++-
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDP 57 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNP 57 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCC
Confidence 4678889999999999999999998843
No 321
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.81 E-value=1.9e-05 Score=59.29 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..+|.|+|+||+||||+...|..+|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 366799999999999999999999887
No 322
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=3e-05 Score=58.57 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=30.3
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
++..|+.++|.||||+|||.+|++++..+|+.++
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 4567888899999999999999999999988775
No 323
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.81 E-value=2e-05 Score=57.43 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.++-.+.|.|++||||||+++.|+.-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 56778999999999999999999763
No 324
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.4e-05 Score=59.32 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=29.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
...|++.||.|||||.+|+.||+.+++||--+|.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 4689999999999999999999999999865443
No 325
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00028 Score=48.40 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=33.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHDG 52 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~~ 52 (176)
+.+-++.||.||||||+...+-..+ +..+++.|++........+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p 47 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNP 47 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCc
Confidence 3567789999999999987764444 6788999999887665544
No 326
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.80 E-value=0.00039 Score=59.41 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|.||||+|||++++.|++++
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 327
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.80 E-value=2e-05 Score=53.40 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++|.|+|+.+|||||+++.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998876
No 328
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.79 E-value=2.2e-05 Score=57.18 Aligned_cols=27 Identities=44% Similarity=0.773 Sum_probs=24.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++++.++|+||||+||||-...||.++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 467899999999999999999999986
No 329
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=2.2e-05 Score=61.51 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=23.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..++|+||+|+||||+|+.+++.+++
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999998864
No 330
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=2.4e-05 Score=56.18 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+.+..+-.|.||+||||||+.+.| .++
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~l-NRm 56 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCL-NRM 56 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHH-Hhh
Confidence 34567889999999999999999999 444
No 331
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.77 E-value=0.0007 Score=47.28 Aligned_cols=148 Identities=15% Similarity=0.247 Sum_probs=76.5
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCC---eEeehhHHHhhcc----------cC--CCchhhhccccc---------chHH
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQL---RHINIGELVREKN----------LH--DGWDDELECHVI---------NEDL 66 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~---~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~---------~~~~ 66 (176)
+|+|+|-.+|||.|++..|.++++. .++.+++.+...- +. ..+.+.++...+ +...
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 5899999999999999999888874 2566665544331 00 111111111110 1223
Q ss_pred HHHHHHHHhhcCCeEEc-C---CCCCCCCCCc--ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh
Q 030477 67 VCDELEDIMEQGGNIVD-Y---HGCDFFPERW--FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE 140 (176)
Q Consensus 67 l~~~i~~~~~~~~~vid-~---~~~~~~~~~~--~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (176)
+++.+.......-+||+ . +....|.... .-..|.+.++.+++.+|.-... ...++.+.+- -..
T Consensus 81 F~r~~~~~~~~~v~iIsD~Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~Ft----~gvdd~~SEc-------~lD 149 (182)
T TIGR01223 81 FCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT----PGVDDAESEC-------GLD 149 (182)
T ss_pred HHHHHHhccCCCEEEEeCCCcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHhcc----cccccccccc-------CCC
Confidence 34333222222234553 1 2222333322 2357888999999999863221 1111111100 001
Q ss_pred cCCC-CcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477 141 SYPE-DIVLALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 141 ~~~~-~~~i~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
.|.. +.+| .|+++.+++.+.+..+++.+.
T Consensus 150 d~~~~D~vi-~Nd~~~~~l~~~l~~l~~~i~ 179 (182)
T TIGR01223 150 NFGDFDWVI-ENHGVEQRLEEQLENLIEFIR 179 (182)
T ss_pred cccceeEEE-ecCCChHHHHHHHHHHHHHHH
Confidence 2322 3333 455567778888888888774
No 332
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.77 E-value=1.9e-05 Score=62.31 Aligned_cols=26 Identities=46% Similarity=0.682 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..-|+|.|+||+||||+|++||+-+
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHH
Confidence 45689999999999999999999965
No 333
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.77 E-value=3.1e-05 Score=54.16 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.3
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
+++|+|++|||||++|..++...+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 47899999999999999998876533
No 334
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.77 E-value=3e-05 Score=65.60 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=28.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIG 41 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~ 41 (176)
+.+.++|+||||+||||+++.+++.++..++..+
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 4467899999999999999999998877665444
No 335
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=2.6e-05 Score=59.81 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRH 37 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~ 37 (176)
+..++++||+|+||||+++.+++.++..+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 34666699999999999999999886544
No 336
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.76 E-value=0.00092 Score=54.17 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~ 39 (176)
..+.+|+|.|..||||+++.+.|.+.+ |+.+..
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~ 73 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHA 73 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEe
Confidence 456789999999999999999999988 455543
No 337
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.76 E-value=2.4e-05 Score=53.62 Aligned_cols=23 Identities=48% Similarity=0.553 Sum_probs=20.7
Q ss_pred eEEEECCCCCChHHHHHHHHHhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l 33 (176)
+++|+|+||+||||++..++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 338
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.76 E-value=2.6e-05 Score=59.93 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=28.7
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEe
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHI 38 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~ 38 (176)
+...++.|++.||||||||.+|-.+|++|| .||.
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 334678999999999999999999999996 4553
No 339
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.75 E-value=2.4e-05 Score=64.02 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+.++++|.||||+||||+++.|++.+
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHH
Confidence 366799999999999999999999876
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.75 E-value=2.2e-05 Score=56.24 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
|++|++.||+|+||||.+-.||..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5689999999999999999999876
No 341
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=2.8e-05 Score=62.46 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..++|+||+|+||||+|+.||+.+++
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 35899999999999999999999876
No 342
>COG4240 Predicted kinase [General function prediction only]
Probab=97.74 E-value=4.4e-05 Score=55.31 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=29.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---C---CeEeehhHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---Q---LRHINIGELV 44 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~---~~~~~~~~~~ 44 (176)
.++.++.|+||-||||||++..|...+ | ...+++||+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY 91 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY 91 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence 457788899999999999998886654 3 3457888864
No 343
>PRK08116 hypothetical protein; Validated
Probab=97.74 E-value=5.5e-05 Score=56.86 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=29.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVRE 46 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~ 46 (176)
+..++|+|++|+|||+++.+++..+ |. .+++..+++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 4569999999999999999999975 43 45566666553
No 344
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.74 E-value=3.3e-05 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+++|.|+|++||||||++..|...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999886
No 345
>PRK13695 putative NTPase; Provisional
Probab=97.73 E-value=3.3e-05 Score=54.20 Aligned_cols=24 Identities=46% Similarity=0.566 Sum_probs=21.2
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.|+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987765
No 346
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.73 E-value=2.9e-05 Score=60.07 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+.++-++.|-||+||||||+.+.||-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45677899999999999999999976
No 347
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.73 E-value=3.3e-05 Score=55.48 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
|..|.|+|++||||||+.+.+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999998765
No 348
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.73 E-value=3.2e-05 Score=55.01 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999997643
No 349
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.73 E-value=3.1e-05 Score=56.22 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998754
No 350
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.73 E-value=5.3e-05 Score=58.50 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREK 47 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~ 47 (176)
...++|.|++|+|||+++.+++..+ | +.+++.++++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4789999999999999999999976 3 4556767765543
No 351
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.73 E-value=6.5e-05 Score=57.50 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVREK 47 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~~ 47 (176)
..+.++|.|++|+|||+++.+++..+ |. .++...+++...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 45789999999999999999999987 43 456777766554
No 352
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.72 E-value=3.3e-05 Score=56.16 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=26.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
.+..++|.|+||+||||+|+.|+.+ ..+++.|.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~ 43 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDM 43 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccc
Confidence 3678999999999999999999632 45666555
No 353
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.72 E-value=2e-05 Score=52.91 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|+|++||||||+.+.|+..+
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEccCCCccccceeeecccc
Confidence 3567899999999999999999997754
No 354
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=3.3e-05 Score=62.86 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
+..++|+||+|+||||+|+.+++.+++.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4578999999999999999999998663
No 355
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.72 E-value=3.3e-05 Score=55.91 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567799999999999999999998754
No 356
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=3.4e-05 Score=55.71 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 357
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.71 E-value=3.8e-05 Score=54.24 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=23.3
Q ss_pred eEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477 11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIG 41 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~ 41 (176)
.++|.|+||||||+++..++... .+.+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 47899999999999999886643 34456543
No 358
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.71 E-value=3.4e-05 Score=56.03 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3567899999999999999999998754
No 359
>PRK13768 GTPase; Provisional
Probab=97.71 E-value=4.1e-05 Score=57.08 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=26.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGE 42 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~ 42 (176)
+.+|++.|++||||||++..++..+ |. .+++.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 3689999999999999999998766 33 3455543
No 360
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=7.5e-05 Score=61.72 Aligned_cols=105 Identities=11% Similarity=0.161 Sum_probs=58.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc-------CCeEeehhHHHhhccc--CC----Cchh---hhcccccc----------
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST-------QLRHINIGELVREKNL--HD----GWDD---ELECHVIN---------- 63 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l-------~~~~~~~~~~~~~~~~--~~----~~~~---~~~~~~~~---------- 63 (176)
..++|+|++|+|||+|+++++..+ .+.|++..+++..... .. .+.. ..+.++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 348999999999999999999865 2356777766543210 01 0110 11111221
Q ss_pred -hHHHHHHHHHHhhc-CCeEEcCCC----CCCC-----CCCcccEEEEEeCChHHHHHHHhh
Q 030477 64 -EDLVCDELEDIMEQ-GGNIVDYHG----CDFF-----PERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 64 -~~~l~~~i~~~~~~-~~~vid~~~----~~~~-----~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
...+++.++.+... +.+|+.... ...+ .+-...+++.|..+..+.+..+..
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 14577777776654 456663211 1111 112346788888877666555543
No 361
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.71 E-value=6.4e-05 Score=55.63 Aligned_cols=37 Identities=22% Similarity=0.517 Sum_probs=29.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVRE 46 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~ 46 (176)
..++|.|++|+|||+++.+++..+ | +.+++..+++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 578999999999999999999987 3 344566666543
No 362
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.70 E-value=3.8e-05 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
..++.++.|.||+||||||+.+.+.-
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 45778999999999999999999853
No 363
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=3.5e-05 Score=61.42 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
....|+|+||||+||||+|+.|+..++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999999874
No 364
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.70 E-value=3.9e-05 Score=59.31 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=28.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
.+..++|.|+||+|||++++.+|+.+|.+++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4578999999999999999999999987775
No 365
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.70 E-value=0.00051 Score=50.31 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST---QLRHINI 40 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~ 40 (176)
+.+|+|.|+.||||+.+.+.|.+.+ |+.+.+.
T Consensus 31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~ 65 (228)
T PF03976_consen 31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAF 65 (228)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-
T ss_pred cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeC
Confidence 4688899999999999999999887 4555443
No 366
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.69 E-value=3.7e-05 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999998754
No 367
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.69 E-value=3.9e-05 Score=58.97 Aligned_cols=27 Identities=44% Similarity=0.477 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|.||+|+||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357799999999999999999998876
No 368
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.69 E-value=6.5e-05 Score=56.01 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=32.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREK 47 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~ 47 (176)
++..++|.|+||+|||.++.+|+.++ | ..|+...+++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 56789999999999999999998876 3 3456777776664
No 369
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.69 E-value=3.9e-05 Score=55.78 Aligned_cols=28 Identities=29% Similarity=0.232 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999998754
No 370
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.69 E-value=4.1e-05 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
....+++|+||+||||||+.+.++.
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHH
Confidence 3457899999999999999999974
No 371
>PHA03134 thymidine kinase; Provisional
Probab=97.68 E-value=0.00083 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.3
Q ss_pred cEEEEEeCChHHHHHHHhhcCCCCccc
Q 030477 96 DRVVVLQTENSVLYDRLTKRGYTGAKL 122 (176)
Q Consensus 96 ~~vi~l~~~~~~~~~R~~~r~~~~~~~ 122 (176)
+.+|+++.++++..+|+.+|++..+..
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R~R~gE~i 191 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRARARIGEQI 191 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHcCCCcccc
Confidence 678999999999999999999987764
No 372
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.68 E-value=4.1e-05 Score=55.46 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999997754
No 373
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=4e-05 Score=56.37 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 374
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.68 E-value=4.1e-05 Score=56.57 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3567899999999999999999998654
No 375
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.68 E-value=4e-05 Score=55.20 Aligned_cols=28 Identities=36% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577899999999999999999998754
No 376
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.68 E-value=4.2e-05 Score=55.31 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998654
No 377
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.68 E-value=4.8e-05 Score=55.30 Aligned_cols=37 Identities=32% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIG 41 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~ 41 (176)
+..++.++.|+|+|||||||++..++... | +.+++.+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45678899999999999999999998764 2 3456544
No 378
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.68 E-value=4.2e-05 Score=55.95 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3577899999999999999999998754
No 379
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.68 E-value=4.1e-05 Score=55.71 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.68 E-value=4.3e-05 Score=57.50 Aligned_cols=35 Identities=31% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCe--Eeehh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIG 41 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~ 41 (176)
.++.+|.++|++|+||||++..||..+ |.. ++++|
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356789999999999999999998866 433 35555
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=97.68 E-value=4.3e-05 Score=59.10 Aligned_cols=26 Identities=42% Similarity=0.413 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+++|++|+||||++..|+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999888888765
No 382
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.68 E-value=5.3e-05 Score=64.80 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=28.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.++.+++|.||||+||||+++.+++.++.+++.
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 366789999999999999999999999877753
No 383
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=4.3e-05 Score=55.32 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998743
No 384
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.67 E-value=6.2e-05 Score=54.98 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=29.4
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG 41 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~ 41 (176)
+..++.++.|+|+||||||+++..++... .+.|++.+
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44677899999999999999999998643 35566665
No 385
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.67 E-value=3.8e-05 Score=55.93 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999997654
No 386
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.67 E-value=3.9e-05 Score=55.57 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3577899999999999999999997754
No 387
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00011 Score=63.08 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..++|+|++|+||||+++.|++.+++
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 45789999999999999999999865
No 388
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=4.1e-05 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++ ++.|.|++||||||+.+.|+..+
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 456 89999999999999999998643
No 389
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=4.7e-05 Score=53.37 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++..+.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567799999999999999999997754
No 390
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=4.6e-05 Score=56.20 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+++.|+.-+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3577899999999999999999998644
No 391
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.66 E-value=5e-05 Score=64.61 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=28.2
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHI--NIGEL 43 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~ 43 (176)
..++|+||||+|||++|+.||+.++.+++ +++++
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 36899999999999999999999987764 44444
No 392
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=4.5e-05 Score=56.05 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567799999999999999999998754
No 393
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.66 E-value=4.1e-05 Score=56.29 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3577899999999999999999997644
No 394
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=4.7e-05 Score=55.90 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++..+.|.|++||||||+.+.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998764
No 395
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.66 E-value=4.7e-05 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+.-+
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4678899999999999999999998643
No 396
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.66 E-value=4.3e-05 Score=59.26 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.....|+|+|++||||||++++|...+
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 356889999999999999999998876
No 397
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.65 E-value=5.3e-05 Score=57.82 Aligned_cols=26 Identities=50% Similarity=0.693 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....|+|+|++||||||++++|.+.+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 398
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.65 E-value=4.6e-05 Score=54.84 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999998754
No 399
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=3.4e-05 Score=57.90 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=33.3
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.|++.+|+-+++.|+||+|||.+|+++|....+.|+..
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv 250 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV 250 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh
Confidence 36778899999999999999999999999888877643
No 400
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.65 E-value=5.3e-05 Score=52.81 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+++.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577899999999999999999997754
No 401
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.65 E-value=4.9e-05 Score=55.00 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++..+.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 402
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.65 E-value=5e-05 Score=53.51 Aligned_cols=27 Identities=37% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 567899999999999999999997743
No 403
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=4.3e-05 Score=55.61 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998754
No 404
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.65 E-value=5.6e-05 Score=56.13 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
+..++..++|+|++|+||||+++.++..+.
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 567889999999999999999999998764
No 405
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=5.1e-05 Score=54.24 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999998754
No 406
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.65 E-value=5.4e-05 Score=57.31 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|+|+||+|+||||++..|+..+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998765
No 407
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.64 E-value=4.9e-05 Score=55.69 Aligned_cols=28 Identities=29% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 408
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.64 E-value=0.00023 Score=53.69 Aligned_cols=28 Identities=43% Similarity=0.586 Sum_probs=24.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
.+.-+|+++||.||||||...++.+.++
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 4667999999999999999888888764
No 409
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.3e-05 Score=53.35 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999997643
No 410
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=5.5e-05 Score=59.88 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+|+||+||||||++..||..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 411
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.64 E-value=5e-05 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHHhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l 33 (176)
+|.|+|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 412
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.64 E-value=5.1e-05 Score=55.85 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578899999999999999999998654
No 413
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.1e-05 Score=55.95 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 414
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=5.2e-05 Score=56.00 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999998754
No 415
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.64 E-value=5.5e-05 Score=53.25 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3567899999999999999999997754
No 416
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.4e-05 Score=55.11 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998754
No 417
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.63 E-value=5.6e-05 Score=55.20 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999998754
No 418
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=4.7e-05 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.++.++.|.|++||||||+.+.|+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5677999999999999999999985
No 419
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=5.9e-05 Score=59.05 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.+++|.||+|+||||++..|+..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998763
No 420
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.63 E-value=5.6e-05 Score=55.27 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3567899999999999999999997643
No 421
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.63 E-value=5.3e-05 Score=55.34 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 422
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.63 E-value=5.9e-05 Score=57.63 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|+|++||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 423
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.62 E-value=5.6e-05 Score=55.31 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 577899999999999999999998754
No 424
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.62 E-value=5.4e-05 Score=55.89 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.++.++.|.|++||||||+.+.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357789999999999999999999875
No 425
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.62 E-value=5.4e-05 Score=54.29 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=19.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..+++.|+||||||++++.+..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998755
No 426
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.62 E-value=6.2e-05 Score=52.78 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467799999999999999999998754
No 427
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.62 E-value=5.9e-05 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEEECCCCCChHHHHHHHHHhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l 33 (176)
.|+|.|++||||||+.+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 428
>PRK04296 thymidine kinase; Provisional
Probab=97.62 E-value=4.7e-05 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+++++|++|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998876
No 429
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.62 E-value=5.9e-05 Score=59.25 Aligned_cols=28 Identities=36% Similarity=0.337 Sum_probs=25.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
.++.+|+|+|++||||||++..|...+.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999998875
No 430
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.62 E-value=6.4e-05 Score=55.79 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc----CCeEeeh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST----QLRHINI 40 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l----~~~~~~~ 40 (176)
..++.++.|.||.||||||+.+.|+.-+ |-..++-
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 4678899999999999999999998855 4445543
No 431
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.62 E-value=5.1e-05 Score=55.17 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=17.7
Q ss_pred eEEEECCCCCChHHHHHHHHHhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+|.|||||||||+...++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68899999999998777776665
No 432
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.61 E-value=5e-05 Score=58.39 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....|+|+|++||||||+.++|....
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 433
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=97.61 E-value=0.00044 Score=53.00 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCch---hhhcccccchHHHHHHHHHHhhcCCeEEc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWD---DELECHVINEDLVCDELEDIMEQGGNIVD 83 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~vid 83 (176)
+...+++.|+.|+|||++++.|++. |+.++|+....+...- +...+ +.....+ +..|...+...-....++++
T Consensus 126 ~~~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hrGs~fG~~~~~~qpsq~~f--e~~L~~~l~~~~~~~~i~~e 202 (311)
T TIGR03167 126 PFPLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANHRGSSFGALGLGPQPSQKRF--ENALAEALRRLDPGRPIFVE 202 (311)
T ss_pred CCceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHHhcCcccCCCCCCCCCchHHH--HHHHHHHHHhCCCCceEEEE
Confidence 3455679999999999999999765 8889998887766541 11111 1111111 44555555543333456775
Q ss_pred CCCCCC----CCC-----CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 84 YHGCDF----FPE-----RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 84 ~~~~~~----~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
.++... +|. .....+|+|++|.+.+.+|+.+ .|
T Consensus 203 ~es~~ig~~~~p~~l~~~m~~~~~i~i~~~~e~Rv~~l~~-~Y 244 (311)
T TIGR03167 203 DESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVE-EY 244 (311)
T ss_pred eCchhhccccCCHHHHHHHhhCCEEEEECCHHHHHHHHHH-Hh
Confidence 443222 221 1233589999999999999985 55
No 434
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=5.8e-05 Score=56.29 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 435
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.61 E-value=0.0017 Score=56.33 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..++|.|+||+|||++++.||..+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999976
No 436
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=6e-05 Score=55.68 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998754
No 437
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.61 E-value=6.1e-05 Score=54.34 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3577899999999999999999997643
No 438
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.60 E-value=6.6e-05 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999997754
No 439
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.60 E-value=6.2e-05 Score=55.20 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 440
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.60 E-value=6.7e-05 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+++.++|+|++|+||||+.+.|....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999999997654
No 441
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.60 E-value=6.5e-05 Score=53.91 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999997754
No 442
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.60 E-value=6.5e-05 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++..+.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999997654
No 443
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00018 Score=62.36 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=27.3
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+++.++++||||+|||.++++|+...
T Consensus 294 ~~itpPrgvL~~GppGTGkTl~araLa~~~ 323 (1080)
T KOG0732|consen 294 FNITPPRGVLFHGPPGTGKTLMARALAAAC 323 (1080)
T ss_pred cccCCCcceeecCCCCCchhHHHHhhhhhh
Confidence 467788999999999999999999999876
No 444
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.60 E-value=7.1e-05 Score=55.56 Aligned_cols=28 Identities=32% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998754
No 445
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.60 E-value=6e-05 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.++.++.|.|++||||||+.+.|+..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356789999999999999999999853
No 446
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.60 E-value=6.2e-05 Score=55.21 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999999998754
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.60 E-value=6.9e-05 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..+|+|+||+||||||+.+.|...+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998765
No 448
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=6.2e-05 Score=61.71 Aligned_cols=26 Identities=42% Similarity=0.480 Sum_probs=23.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..++|+||+|+||||+|+.|++.+++
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999998754
No 449
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.59 E-value=6.5e-05 Score=54.62 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3578899999999999999999998653
No 450
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=6.4e-05 Score=55.81 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3567899999999999999999998753
No 451
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.59 E-value=6.3e-05 Score=56.21 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3567899999999999999999998653
No 452
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.59 E-value=6.7e-05 Score=51.07 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3567899999999999999999997754
No 453
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=6.7e-05 Score=54.90 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3567789999999999999999998754
No 454
>PRK13764 ATPase; Provisional
Probab=97.59 E-value=6.5e-05 Score=62.14 Aligned_cols=28 Identities=43% Similarity=0.636 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
.+...|+|+|++||||||++++|++.+.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999998763
No 455
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=6e-05 Score=64.55 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
..++|+||+|+||||+|+.|++.+++.
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 346899999999999999999998653
No 456
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.59 E-value=9e-05 Score=58.59 Aligned_cols=26 Identities=46% Similarity=0.643 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..++|+|+||+||||+++.+++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998876
No 457
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.59 E-value=7e-05 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3578899999999999999999997754
No 458
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.58 E-value=6.2e-05 Score=55.05 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|+|++||||||+.+.|+..+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3567899999999999999999998654
No 459
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.58 E-value=6.9e-05 Score=54.99 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999998754
No 460
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.8e-05 Score=56.35 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=32.5
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
+.++.+|+.+++.||||+|||.+|++-|...+..|+.
T Consensus 199 ~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK 235 (424)
T KOG0652|consen 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK 235 (424)
T ss_pred hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH
Confidence 4677889999999999999999999999988777653
No 461
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.58 E-value=6.9e-05 Score=55.60 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999998754
No 462
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.58 E-value=6.4e-05 Score=55.89 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998764
No 463
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=6e-05 Score=61.44 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
..++|+||||+||||+++.+++.+.+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45699999999999999999998853
No 464
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.58 E-value=7.1e-05 Score=54.36 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998754
No 465
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=6.8e-05 Score=62.38 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=24.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
+..++|+||+|+||||+|+.||+.+++
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457799999999999999999999865
No 466
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.58 E-value=7.3e-05 Score=56.28 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
|++|.|+|.+|||||||+..|+..|
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 467
>PRK10908 cell division protein FtsE; Provisional
Probab=97.58 E-value=7.3e-05 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998654
No 468
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.57 E-value=7.4e-05 Score=53.94 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999998754
No 469
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=7.9e-05 Score=52.14 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++..+.|.|++||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 567899999999999999999998754
No 470
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=7.3e-05 Score=55.24 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577899999999999999999998754
No 471
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.57 E-value=7.2e-05 Score=52.89 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++..+.|.|++||||||+.+.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998754
No 472
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=7.2e-05 Score=55.21 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=24.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 473
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=7.2e-05 Score=54.91 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998754
No 474
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.57 E-value=6.2e-05 Score=56.55 Aligned_cols=26 Identities=50% Similarity=0.707 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....|+|+|++||||||+.+.|.+.+
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cceEEEEECCCccccchHHHHHhhhc
Confidence 46799999999999999999999876
No 475
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.56 E-value=7.5e-05 Score=55.09 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 476
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.56 E-value=7.6e-05 Score=53.91 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
...++|.|+|++||||||+.+.+.+.++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999988753
No 477
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.56 E-value=7.6e-05 Score=55.76 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999998754
No 478
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=9.1e-05 Score=53.73 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=27.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
...+-+..|+||.||||||++..|+-.-+|.+.
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt 59 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT 59 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe
Confidence 356678899999999999999999886655543
No 479
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.56 E-value=7.4e-05 Score=55.55 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++..+.|.|++||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999998754
No 480
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=7.8e-05 Score=54.74 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++-++.|.|++||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3567899999999999999999998754
No 481
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.56 E-value=7.9e-05 Score=53.37 Aligned_cols=28 Identities=36% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++..+.|.|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999998754
No 482
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=9.3e-05 Score=56.63 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=29.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
.|+.|+..||.|.|||-+|+.||+-.|+||+
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 4789999999999999999999998899997
No 483
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=7.7e-05 Score=56.03 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++-++.|.|++||||||+.+.|+..+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999998754
No 484
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=7.8e-05 Score=55.67 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3577899999999999999999998643
No 485
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=8e-05 Score=53.82 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999997654
No 486
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.55 E-value=8e-05 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4577899999999999999999998643
No 487
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.55 E-value=8.2e-05 Score=53.56 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577899999999999999999998754
No 488
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=8.1e-05 Score=55.34 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3577899999999999999999998753
No 489
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=8.1e-05 Score=55.32 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.++.++.|.|++||||||+++.|+.-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356789999999999999999999763
No 490
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.55 E-value=8.1e-05 Score=54.78 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 567899999999999999999998754
No 491
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.55 E-value=0.00013 Score=45.39 Aligned_cols=31 Identities=42% Similarity=0.493 Sum_probs=25.8
Q ss_pred eEEEECCCCCChHHHHHHHHHhc---CCeEeehh
Q 030477 11 NILVTGTPGTGKTTTSTALAEST---QLRHINIG 41 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~ 41 (176)
+++++|..|+||||++..|+..+ |..++-.|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 47899999999999999999987 66666555
No 492
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=8.1e-05 Score=55.36 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3577899999999999999999998753
No 493
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=8.3e-05 Score=55.20 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
..++.++.|.|++||||||+.+.|+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35678999999999999999999985
No 494
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.55 E-value=8.9e-05 Score=57.69 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..+|+|+||+||||||+.+.|...+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998765
No 495
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.55 E-value=8e-05 Score=54.44 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+..+
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998743
No 496
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.55 E-value=6e-05 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEECCCCCChHHHHHHHHHhc
Q 030477 12 ILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 12 I~l~G~~GsGKSTla~~La~~l 33 (176)
|+|.|+|||||||+.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999883
No 497
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=7.9e-05 Score=60.32 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
+.-++++||+|+||||+|+.+|+.+++
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcC
Confidence 347899999999999999999998754
No 498
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00011 Score=57.80 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=27.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~ 42 (176)
++..|+|.||.|+||||++..||..+ | ..++++|.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 56799999999999999999998765 2 34556554
No 499
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.54 E-value=0.0001 Score=57.00 Aligned_cols=34 Identities=32% Similarity=0.652 Sum_probs=27.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG 41 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~ 41 (176)
.-+.+++.||||+||||+|+.|+... .+.|+.++
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 45678999999999999999998754 45566554
No 500
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.54 E-value=8.9e-05 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+..+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 567799999999999999999998754
Done!