Query 030477
Match_columns 176
No_of_seqs 122 out of 1730
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 23:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iij_A Coilin-interacting nucl 100.0 1E-28 3.4E-33 173.6 16.1 171 3-173 5-175 (180)
2 1y63_A LMAJ004144AAA protein; 100.0 1.6E-27 5.6E-32 168.1 17.4 170 5-174 6-180 (184)
3 3umf_A Adenylate kinase; rossm 99.9 1.8E-22 6.1E-27 145.2 14.6 161 3-168 23-213 (217)
4 3sr0_A Adenylate kinase; phosp 99.9 1.5E-20 5E-25 134.5 14.0 153 10-167 1-203 (206)
5 3vaa_A Shikimate kinase, SK; s 99.9 1.6E-20 5.5E-25 133.7 13.8 161 5-169 21-196 (199)
6 2c95_A Adenylate kinase 1; tra 99.8 5.8E-20 2E-24 130.1 13.7 162 6-169 6-194 (196)
7 1kht_A Adenylate kinase; phosp 99.8 1.1E-19 3.7E-24 128.2 12.5 159 8-166 2-191 (192)
8 2bwj_A Adenylate kinase 5; pho 99.8 1.3E-19 4.6E-24 128.5 12.8 163 6-168 9-196 (199)
9 3tlx_A Adenylate kinase 2; str 99.8 2.3E-19 7.9E-24 131.5 13.7 157 6-167 26-242 (243)
10 2cdn_A Adenylate kinase; phosp 99.8 1.1E-18 3.9E-23 124.2 15.8 157 7-166 18-199 (201)
11 3be4_A Adenylate kinase; malar 99.8 5.6E-19 1.9E-23 127.4 13.9 109 8-116 4-133 (217)
12 1qf9_A UMP/CMP kinase, protein 99.8 1.3E-18 4.5E-23 122.7 15.2 160 9-168 6-191 (194)
13 1ukz_A Uridylate kinase; trans 99.8 7.6E-19 2.6E-23 125.2 13.5 160 7-168 13-201 (203)
14 1aky_A Adenylate kinase; ATP:A 99.8 8.3E-19 2.8E-23 126.6 13.6 159 8-166 3-217 (220)
15 3kb2_A SPBC2 prophage-derived 99.8 1.4E-18 4.7E-23 120.5 13.7 142 10-168 2-166 (173)
16 3cm0_A Adenylate kinase; ATP-b 99.8 4.2E-19 1.4E-23 124.8 11.2 159 7-166 2-184 (186)
17 1tev_A UMP-CMP kinase; ploop, 99.8 1.2E-18 4.3E-23 123.0 13.1 161 8-168 2-194 (196)
18 1zak_A Adenylate kinase; ATP:A 99.8 6.8E-18 2.3E-22 121.9 17.2 162 7-169 3-211 (222)
19 3trf_A Shikimate kinase, SK; a 99.8 5.6E-19 1.9E-23 124.1 11.2 154 8-166 4-172 (185)
20 3dl0_A Adenylate kinase; phosp 99.8 8.8E-19 3E-23 126.0 11.4 100 11-115 2-127 (216)
21 1via_A Shikimate kinase; struc 99.8 1.5E-18 5E-23 121.1 12.1 151 9-167 4-165 (175)
22 3gmt_A Adenylate kinase; ssgci 99.8 1E-18 3.4E-23 126.3 11.2 155 8-167 7-228 (230)
23 3fb4_A Adenylate kinase; psych 99.8 1.7E-18 5.7E-23 124.5 12.2 105 11-115 2-127 (216)
24 3nwj_A ATSK2; P loop, shikimat 99.8 4E-19 1.4E-23 130.5 7.5 158 9-170 48-238 (250)
25 1e6c_A Shikimate kinase; phosp 99.8 6.6E-18 2.2E-22 117.3 13.3 154 10-166 3-168 (173)
26 1ak2_A Adenylate kinase isoenz 99.8 1.2E-17 4.1E-22 121.6 15.1 163 7-169 14-231 (233)
27 1zuh_A Shikimate kinase; alpha 99.8 5.1E-18 1.7E-22 117.5 12.3 151 8-166 6-167 (168)
28 1cke_A CK, MSSA, protein (cyti 99.8 1.7E-17 5.7E-22 120.1 15.4 160 6-169 2-223 (227)
29 2xb4_A Adenylate kinase; ATP-b 99.8 7E-18 2.4E-22 122.1 13.4 107 10-116 1-127 (223)
30 2iyv_A Shikimate kinase, SK; t 99.8 1.5E-18 5.2E-23 121.8 9.6 151 10-166 3-166 (184)
31 3lw7_A Adenylate kinase relate 99.8 1.1E-17 3.9E-22 115.9 13.6 154 10-169 2-177 (179)
32 3t61_A Gluconokinase; PSI-biol 99.8 1.6E-18 5.6E-23 123.4 9.5 151 8-169 17-180 (202)
33 1zd8_A GTP:AMP phosphotransfer 99.8 1.5E-17 5.2E-22 120.5 13.6 111 6-116 4-129 (227)
34 1kag_A SKI, shikimate kinase I 99.8 1.1E-18 3.9E-23 121.2 7.3 157 8-166 3-170 (173)
35 1e4v_A Adenylate kinase; trans 99.8 2.4E-17 8.3E-22 118.4 14.1 106 11-116 2-124 (214)
36 3fdi_A Uncharacterized protein 99.8 2.4E-17 8.1E-22 117.5 13.8 155 8-167 5-197 (201)
37 1knq_A Gluconate kinase; ALFA/ 99.7 6.7E-17 2.3E-21 112.5 14.0 150 7-166 6-171 (175)
38 2pt5_A Shikimate kinase, SK; a 99.7 6.9E-18 2.3E-22 116.7 8.9 150 10-167 1-162 (168)
39 2h92_A Cytidylate kinase; ross 99.7 1.2E-16 4.2E-21 115.0 15.4 151 8-167 2-216 (219)
40 4eun_A Thermoresistant glucoki 99.7 1.4E-16 4.7E-21 113.4 15.2 153 7-167 27-192 (200)
41 1nks_A Adenylate kinase; therm 99.7 6.3E-17 2.2E-21 114.0 13.3 155 10-166 2-193 (194)
42 4e22_A Cytidylate kinase; P-lo 99.7 1.1E-16 3.8E-21 117.9 14.8 159 7-169 25-245 (252)
43 2rhm_A Putative kinase; P-loop 99.7 1.8E-18 6.2E-23 122.1 4.1 113 5-117 1-127 (193)
44 2jaq_A Deoxyguanosine kinase; 99.7 1.2E-16 4E-21 113.6 12.2 155 10-168 1-200 (205)
45 3r20_A Cytidylate kinase; stru 99.7 1.5E-16 5.2E-21 115.4 12.9 158 6-167 6-226 (233)
46 4i1u_A Dephospho-COA kinase; s 99.7 2.4E-16 8.4E-21 112.4 13.7 157 6-171 6-204 (210)
47 1jjv_A Dephospho-COA kinase; P 99.7 3.3E-16 1.1E-20 111.7 13.6 156 10-172 3-200 (206)
48 3ake_A Cytidylate kinase; CMP 99.7 1.4E-15 4.8E-20 108.4 16.8 146 11-167 4-207 (208)
49 2qt1_A Nicotinamide riboside k 99.7 3.1E-15 1E-19 106.8 16.6 161 6-167 18-204 (207)
50 3hdt_A Putative kinase; struct 99.7 6.4E-16 2.2E-20 111.6 12.8 155 8-167 13-217 (223)
51 1nn5_A Similar to deoxythymidy 99.7 1.2E-16 4E-21 114.5 8.6 164 3-170 3-202 (215)
52 1q3t_A Cytidylate kinase; nucl 99.7 1.5E-15 5.1E-20 110.7 14.5 156 7-167 14-233 (236)
53 2vli_A Antibiotic resistance p 99.7 1.1E-15 3.7E-20 106.9 13.2 151 8-167 4-170 (183)
54 3a4m_A L-seryl-tRNA(SEC) kinas 99.7 1.1E-15 3.9E-20 112.9 14.0 149 6-166 1-171 (260)
55 1vht_A Dephospho-COA kinase; s 99.7 9.5E-16 3.2E-20 110.3 12.6 41 6-47 1-41 (218)
56 4eaq_A DTMP kinase, thymidylat 99.7 6.8E-15 2.3E-19 106.8 16.9 159 5-169 22-225 (229)
57 1qhx_A CPT, protein (chloramph 99.7 8.7E-16 3E-20 107.0 11.7 147 9-165 3-175 (178)
58 2plr_A DTMP kinase, probable t 99.7 3E-15 1E-19 106.9 14.4 159 7-169 2-208 (213)
59 3v9p_A DTMP kinase, thymidylat 99.7 4.6E-16 1.6E-20 112.6 10.0 156 6-168 22-226 (227)
60 2if2_A Dephospho-COA kinase; a 99.7 1.3E-15 4.6E-20 108.4 11.5 149 10-167 2-190 (204)
61 2grj_A Dephospho-COA kinase; T 99.7 2.8E-15 9.5E-20 106.0 12.9 143 8-169 11-187 (192)
62 3lv8_A DTMP kinase, thymidylat 99.6 1.1E-15 3.7E-20 111.2 9.9 163 6-171 24-231 (236)
63 4tmk_A Protein (thymidylate ki 99.6 1.3E-14 4.3E-19 104.2 15.3 160 8-170 2-208 (213)
64 1uj2_A Uridine-cytidine kinase 99.6 6.5E-16 2.2E-20 113.7 8.8 107 7-116 20-172 (252)
65 4edh_A DTMP kinase, thymidylat 99.6 1.7E-14 5.7E-19 103.6 15.5 161 7-169 4-207 (213)
66 4hlc_A DTMP kinase, thymidylat 99.6 2.7E-14 9.1E-19 102.0 16.2 158 10-168 3-200 (205)
67 2pbr_A DTMP kinase, thymidylat 99.6 1.7E-14 5.8E-19 101.6 15.1 152 10-167 1-190 (195)
68 2z0h_A DTMP kinase, thymidylat 99.6 9.2E-15 3.2E-19 103.2 13.7 153 10-168 1-191 (197)
69 2wwf_A Thymidilate kinase, put 99.6 3.8E-16 1.3E-20 111.7 6.6 157 5-168 6-199 (212)
70 1ly1_A Polynucleotide kinase; 99.6 6.6E-16 2.2E-20 107.6 7.0 106 10-117 3-128 (181)
71 2f6r_A COA synthase, bifunctio 99.6 1.6E-14 5.5E-19 107.9 14.7 155 8-171 74-271 (281)
72 2v54_A DTMP kinase, thymidylat 99.6 3.9E-15 1.3E-19 105.8 10.9 159 6-170 1-192 (204)
73 1uf9_A TT1252 protein; P-loop, 99.6 3.7E-15 1.3E-19 105.8 10.5 39 7-46 6-44 (203)
74 3tmk_A Thymidylate kinase; pho 99.6 7.2E-15 2.5E-19 105.6 9.4 158 6-170 2-204 (216)
75 2qor_A Guanylate kinase; phosp 99.6 1.8E-14 6E-19 102.7 9.7 156 4-168 7-196 (204)
76 3hjn_A DTMP kinase, thymidylat 99.5 1.7E-13 5.7E-18 97.3 13.8 153 10-167 1-190 (197)
77 2bbw_A Adenylate kinase 4, AK4 99.5 5E-13 1.7E-17 97.8 16.4 112 4-115 22-148 (246)
78 2yvu_A Probable adenylyl-sulfa 99.5 8.4E-14 2.9E-18 97.7 9.8 149 6-167 10-182 (186)
79 3ld9_A DTMP kinase, thymidylat 99.5 8.6E-14 3E-18 100.3 10.0 159 4-169 16-216 (223)
80 3uie_A Adenylyl-sulfate kinase 99.5 6.2E-13 2.1E-17 94.4 12.2 146 7-168 23-194 (200)
81 2pez_A Bifunctional 3'-phospho 99.5 1.5E-12 5.2E-17 90.7 12.6 35 7-41 3-40 (179)
82 1m7g_A Adenylylsulfate kinase; 99.5 1.2E-12 4.2E-17 93.6 12.2 153 6-168 22-202 (211)
83 3zvl_A Bifunctional polynucleo 99.5 1.8E-13 6.1E-18 107.5 8.3 94 6-117 255-359 (416)
84 1ex7_A Guanylate kinase; subst 99.4 2.4E-12 8.3E-17 90.3 12.5 148 10-166 2-182 (186)
85 1p5z_B DCK, deoxycytidine kina 99.4 1.9E-13 6.4E-18 101.1 7.0 75 94-168 174-258 (263)
86 1x6v_B Bifunctional 3'-phospho 99.4 5.6E-13 1.9E-17 108.7 10.4 151 7-167 50-221 (630)
87 2vp4_A Deoxynucleoside kinase; 99.4 5.7E-13 2E-17 96.6 9.1 76 94-169 146-225 (230)
88 1gvn_B Zeta; postsegregational 99.4 2E-11 6.9E-16 91.3 17.2 109 7-115 31-162 (287)
89 1ltq_A Polynucleotide kinase; 99.4 4.6E-13 1.6E-17 100.6 6.3 106 10-117 3-128 (301)
90 2ocp_A DGK, deoxyguanosine kin 99.4 3.7E-12 1.3E-16 92.9 9.7 80 94-173 149-238 (241)
91 2gks_A Bifunctional SAT/APS ki 99.4 5.4E-13 1.9E-17 107.8 5.6 150 8-168 371-540 (546)
92 3tr0_A Guanylate kinase, GMP k 99.4 2.4E-11 8.3E-16 86.1 13.3 35 5-39 3-37 (205)
93 1zp6_A Hypothetical protein AT 99.3 9.9E-12 3.4E-16 87.2 10.8 153 6-167 6-174 (191)
94 3tau_A Guanylate kinase, GMP k 99.3 2.4E-12 8.2E-17 91.9 7.5 155 5-168 4-188 (208)
95 2ze6_A Isopentenyl transferase 99.3 1.1E-12 3.9E-17 96.4 5.8 35 10-44 2-36 (253)
96 2p5t_B PEZT; postsegregational 99.3 5.3E-12 1.8E-16 92.8 8.5 110 6-115 29-157 (253)
97 1a7j_A Phosphoribulokinase; tr 99.3 1.1E-11 3.8E-16 92.8 8.4 38 8-45 4-46 (290)
98 1m8p_A Sulfate adenylyltransfe 99.3 6.1E-12 2.1E-16 102.2 7.4 154 7-168 394-566 (573)
99 2bdt_A BH3686; alpha-beta prot 99.3 1.4E-10 4.7E-15 81.3 13.0 105 10-117 3-124 (189)
100 3ch4_B Pmkase, phosphomevalona 99.2 1.2E-11 4.2E-16 87.3 5.8 154 7-171 9-192 (202)
101 2j41_A Guanylate kinase; GMP, 99.2 1.5E-11 5.2E-16 87.2 6.2 28 6-33 3-30 (207)
102 3cr8_A Sulfate adenylyltranfer 99.2 3.7E-11 1.3E-15 97.1 7.9 154 6-168 366-539 (552)
103 3asz_A Uridine kinase; cytidin 99.2 2.7E-10 9.2E-15 81.2 10.8 40 6-45 3-44 (211)
104 3a8t_A Adenylate isopentenyltr 99.1 1.9E-10 6.3E-15 87.4 9.1 36 8-43 39-74 (339)
105 3c8u_A Fructokinase; YP_612366 99.1 7.1E-10 2.4E-14 79.0 11.5 37 7-43 20-61 (208)
106 3a00_A Guanylate kinase, GMP k 99.1 1.1E-10 3.8E-15 81.8 6.6 25 9-33 1-25 (186)
107 2axn_A 6-phosphofructo-2-kinas 99.1 4.8E-10 1.7E-14 90.2 11.1 40 8-47 34-78 (520)
108 1gtv_A TMK, thymidylate kinase 99.1 7.8E-12 2.7E-16 89.3 -0.5 26 10-35 1-26 (214)
109 2jeo_A Uridine-cytidine kinase 99.0 1.1E-09 3.8E-14 79.9 9.6 30 7-36 23-52 (245)
110 1rz3_A Hypothetical protein rb 99.0 3.4E-10 1.2E-14 80.3 6.5 110 6-116 19-165 (201)
111 3lnc_A Guanylate kinase, GMP k 99.0 8.8E-10 3E-14 79.7 7.4 27 7-33 25-52 (231)
112 4b4t_M 26S protease regulatory 99.0 1.4E-09 4.8E-14 85.4 9.0 37 4-40 210-246 (434)
113 1kgd_A CASK, peripheral plasma 99.0 1.2E-09 4E-14 76.2 7.6 27 8-34 4-30 (180)
114 3tqc_A Pantothenate kinase; bi 99.0 5.7E-09 1.9E-13 79.0 11.0 107 7-116 90-248 (321)
115 4b4t_I 26S protease regulatory 99.0 9.8E-10 3.3E-14 85.7 7.0 37 4-40 211-247 (437)
116 4b4t_L 26S protease subunit RP 98.9 2.4E-09 8.2E-14 84.1 8.4 37 4-40 210-246 (437)
117 4b4t_J 26S protease regulatory 98.9 1.3E-09 4.4E-14 84.6 6.8 37 4-40 177-213 (405)
118 3ney_A 55 kDa erythrocyte memb 98.9 2.3E-09 7.8E-14 75.7 7.5 31 4-34 14-44 (197)
119 1p6x_A Thymidine kinase; P-loo 98.9 4.3E-09 1.5E-13 80.0 7.6 29 7-35 5-33 (334)
120 1sq5_A Pantothenate kinase; P- 98.9 3.5E-08 1.2E-12 74.4 12.4 37 7-43 78-121 (308)
121 4b4t_K 26S protease regulatory 98.9 6E-09 2E-13 81.7 7.9 37 4-40 201-237 (428)
122 4b4t_H 26S protease regulatory 98.8 2.8E-09 9.7E-14 83.9 5.5 37 4-40 238-274 (467)
123 3d3q_A TRNA delta(2)-isopenten 98.8 1.6E-09 5.4E-14 82.4 3.3 41 1-43 1-41 (340)
124 3cf2_A TER ATPase, transitiona 98.8 2.8E-08 9.7E-13 83.3 10.6 37 4-40 233-269 (806)
125 1g8f_A Sulfate adenylyltransfe 98.8 1.9E-08 6.5E-13 80.5 8.4 36 7-42 393-435 (511)
126 1bif_A 6-phosphofructo-2-kinas 98.8 7.4E-08 2.5E-12 76.6 11.8 39 8-46 38-81 (469)
127 3crm_A TRNA delta(2)-isopenten 98.8 3.9E-09 1.3E-13 79.8 4.2 35 10-44 6-40 (323)
128 1s96_A Guanylate kinase, GMP k 98.7 3.1E-07 1.1E-11 65.9 12.2 31 4-34 11-41 (219)
129 3foz_A TRNA delta(2)-isopenten 98.7 9.8E-09 3.4E-13 77.0 3.9 43 1-43 1-44 (316)
130 1osn_A Thymidine kinase, VZV-T 98.7 4.1E-08 1.4E-12 74.7 6.8 33 3-35 6-39 (341)
131 3exa_A TRNA delta(2)-isopenten 98.6 1.8E-08 6.2E-13 75.7 4.0 36 8-43 2-37 (322)
132 1lvg_A Guanylate kinase, GMP k 98.6 1.4E-06 4.6E-11 61.5 13.4 28 6-33 1-28 (198)
133 1e2k_A Thymidine kinase; trans 98.6 2.4E-08 8.3E-13 75.7 3.9 28 7-34 2-29 (331)
134 3t15_A Ribulose bisphosphate c 98.6 3.2E-08 1.1E-12 74.1 4.5 34 6-39 33-66 (293)
135 3cf2_A TER ATPase, transitiona 98.6 6.1E-08 2.1E-12 81.4 6.3 37 4-40 506-542 (806)
136 1of1_A Thymidine kinase; trans 98.6 3.9E-08 1.3E-12 75.7 4.3 29 6-34 46-74 (376)
137 3aez_A Pantothenate kinase; tr 98.5 3.2E-07 1.1E-11 69.2 8.4 28 6-33 87-114 (312)
138 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1.1E-07 3.9E-12 69.4 4.7 35 5-39 35-69 (262)
139 1lv7_A FTSH; alpha/beta domain 98.5 1.5E-07 5.2E-12 68.8 4.9 34 7-40 43-76 (257)
140 1dek_A Deoxynucleoside monopho 98.5 1.3E-07 4.5E-12 68.8 4.2 37 10-46 2-38 (241)
141 3cf0_A Transitional endoplasmi 98.4 1.8E-07 6.2E-12 70.2 5.0 35 6-40 46-80 (301)
142 3czq_A Putative polyphosphate 98.4 1.3E-06 4.3E-11 65.3 9.0 32 8-39 85-119 (304)
143 3h4m_A Proteasome-activating n 98.4 2.6E-07 8.7E-12 68.5 5.0 34 6-39 48-81 (285)
144 3eph_A TRNA isopentenyltransfe 98.4 1.8E-07 6.2E-12 72.6 3.5 34 9-42 2-35 (409)
145 3b9p_A CG5977-PA, isoform A; A 98.4 3.4E-07 1.2E-11 68.3 4.8 32 8-39 53-84 (297)
146 3eie_A Vacuolar protein sortin 98.4 4.2E-07 1.4E-11 68.8 5.1 34 7-40 49-82 (322)
147 2kjq_A DNAA-related protein; s 98.3 5.8E-07 2E-11 60.6 5.1 36 8-43 35-75 (149)
148 2x8a_A Nuclear valosin-contain 98.3 5.2E-07 1.8E-11 66.9 5.1 34 6-39 41-74 (274)
149 1g41_A Heat shock protein HSLU 98.3 3.8E-07 1.3E-11 71.8 4.4 35 8-42 49-83 (444)
150 3hws_A ATP-dependent CLP prote 98.3 4E-07 1.4E-11 70.0 4.4 33 8-40 50-82 (363)
151 1xwi_A SKD1 protein; VPS4B, AA 98.3 6E-07 2.1E-11 68.0 5.0 33 7-39 43-76 (322)
152 3ec2_A DNA replication protein 98.3 7E-07 2.4E-11 61.8 4.7 39 7-45 36-80 (180)
153 3bos_A Putative DNA replicatio 98.3 1.8E-06 6.2E-11 61.9 7.1 38 8-45 51-93 (242)
154 2qp9_X Vacuolar protein sortin 98.3 7.1E-07 2.4E-11 68.5 4.9 34 7-40 82-115 (355)
155 1d2n_A N-ethylmaleimide-sensit 98.3 4.4E-07 1.5E-11 67.0 3.5 34 7-40 62-95 (272)
156 2r62_A Cell division protease 98.3 2.5E-07 8.4E-12 68.1 1.9 34 7-40 42-75 (268)
157 2qmh_A HPR kinase/phosphorylas 98.3 6.7E-07 2.3E-11 62.9 3.9 35 8-43 33-67 (205)
158 1ofh_A ATP-dependent HSL prote 98.2 8.8E-07 3E-11 66.2 4.4 32 8-39 49-80 (310)
159 1um8_A ATP-dependent CLP prote 98.2 8.9E-07 3E-11 68.3 4.5 33 8-40 71-103 (376)
160 2ce7_A Cell division protein F 98.2 1.1E-06 3.9E-11 69.8 4.9 34 7-40 47-80 (476)
161 1jbk_A CLPB protein; beta barr 98.2 1.3E-06 4.5E-11 60.2 4.7 26 8-33 42-67 (195)
162 3d8b_A Fidgetin-like protein 1 98.2 1.1E-06 3.9E-11 67.4 4.7 33 7-39 115-147 (357)
163 2c9o_A RUVB-like 1; hexameric 98.2 1.1E-06 3.9E-11 69.5 4.8 34 7-40 61-96 (456)
164 1ixz_A ATP-dependent metallopr 98.2 1.4E-06 4.7E-11 63.6 4.9 31 9-39 49-79 (254)
165 2p65_A Hypothetical protein PF 98.2 1.1E-06 3.8E-11 60.5 3.8 26 8-33 42-67 (187)
166 1kjw_A Postsynaptic density pr 98.2 6E-05 2E-09 56.4 13.4 149 6-169 102-282 (295)
167 1odf_A YGR205W, hypothetical 3 98.2 1.4E-06 4.8E-11 65.1 4.5 39 6-44 28-74 (290)
168 2ga8_A Hypothetical 39.9 kDa p 98.2 2.8E-07 9.5E-12 70.4 0.5 29 9-37 24-52 (359)
169 1tue_A Replication protein E1; 98.2 1.3E-06 4.5E-11 61.7 3.9 33 7-39 56-88 (212)
170 3vfd_A Spastin; ATPase, microt 98.2 2E-06 6.7E-11 66.8 4.9 33 8-40 147-179 (389)
171 3pfi_A Holliday junction ATP-d 98.1 1.7E-06 5.9E-11 65.6 4.4 33 8-40 54-86 (338)
172 2zan_A Vacuolar protein sortin 98.1 1.9E-06 6.6E-11 68.1 4.8 33 7-39 165-198 (444)
173 1in4_A RUVB, holliday junction 98.1 1.9E-06 6.5E-11 65.6 4.6 30 8-37 50-79 (334)
174 1sxj_A Activator 1 95 kDa subu 98.1 2.1E-06 7.2E-11 69.1 5.0 33 8-40 76-108 (516)
175 2w58_A DNAI, primosome compone 98.1 3.3E-06 1.1E-10 59.3 5.2 36 10-45 55-95 (202)
176 3czp_A Putative polyphosphate 98.1 2E-05 7E-10 62.9 10.2 33 7-39 41-76 (500)
177 4gp7_A Metallophosphoesterase; 98.1 1.5E-06 5E-11 59.8 3.2 102 7-116 7-122 (171)
178 3syl_A Protein CBBX; photosynt 98.1 2.7E-06 9.1E-11 63.7 4.8 26 8-33 66-91 (309)
179 1iy2_A ATP-dependent metallopr 98.1 2.8E-06 9.6E-11 62.8 4.9 31 9-39 73-103 (278)
180 1svm_A Large T antigen; AAA+ f 98.1 2.8E-06 9.7E-11 65.6 5.1 35 5-39 165-199 (377)
181 3czp_A Putative polyphosphate 98.1 3.1E-05 1.1E-09 61.8 11.2 32 8-39 299-333 (500)
182 3n70_A Transport activator; si 98.1 2.3E-06 7.7E-11 57.3 3.9 26 8-33 23-48 (145)
183 1np6_A Molybdopterin-guanine d 98.1 2.3E-06 8E-11 59.1 4.0 28 6-33 3-30 (174)
184 3hu3_A Transitional endoplasmi 98.1 2.9E-06 1E-10 67.8 5.0 35 6-40 235-269 (489)
185 1z6g_A Guanylate kinase; struc 98.1 2.2E-06 7.5E-11 61.3 3.8 28 6-33 20-47 (218)
186 2dhr_A FTSH; AAA+ protein, hex 98.1 3.4E-06 1.2E-10 67.5 5.2 33 7-39 62-94 (499)
187 1ye8_A Protein THEP1, hypothet 98.1 2.1E-06 7.1E-11 59.6 3.4 27 10-36 1-27 (178)
188 1l8q_A Chromosomal replication 98.1 2.8E-06 9.7E-11 64.1 4.1 36 8-43 36-76 (324)
189 3pvs_A Replication-associated 98.0 4.2E-06 1.4E-10 66.2 4.8 32 9-40 50-81 (447)
190 1xjc_A MOBB protein homolog; s 98.0 3.8E-06 1.3E-10 57.7 3.8 26 8-33 3-28 (169)
191 1znw_A Guanylate kinase, GMP k 98.0 4E-06 1.4E-10 59.4 4.0 29 6-34 17-45 (207)
192 1ypw_A Transitional endoplasmi 98.0 4.5E-06 1.5E-10 70.6 4.7 36 5-40 234-269 (806)
193 2r8r_A Sensor protein; KDPD, P 98.0 4.1E-05 1.4E-09 54.9 8.7 32 10-41 7-43 (228)
194 1hqc_A RUVB; extended AAA-ATPa 98.0 4.5E-06 1.6E-10 62.8 3.9 31 8-38 37-67 (324)
195 3co5_A Putative two-component 98.0 1.5E-06 5.1E-11 58.0 1.0 27 8-34 26-52 (143)
196 3uk6_A RUVB-like 2; hexameric 98.0 6.3E-06 2.1E-10 63.1 4.5 27 9-35 70-96 (368)
197 3tvt_A Disks large 1 tumor sup 98.0 4.5E-05 1.5E-09 56.9 8.9 151 7-169 98-277 (292)
198 3te6_A Regulatory protein SIR3 98.0 3.9E-06 1.3E-10 63.4 3.0 27 7-33 43-69 (318)
199 3m6a_A ATP-dependent protease 97.9 6.8E-06 2.3E-10 66.5 4.5 32 8-39 107-138 (543)
200 2v1u_A Cell division control p 97.9 5.5E-06 1.9E-10 63.6 3.8 27 7-33 42-68 (387)
201 2qby_B CDC6 homolog 3, cell di 97.9 7.6E-06 2.6E-10 62.9 4.5 26 8-33 44-69 (384)
202 3u61_B DNA polymerase accessor 97.9 7.1E-06 2.4E-10 61.8 4.0 32 9-40 48-79 (324)
203 2r44_A Uncharacterized protein 97.9 4.7E-06 1.6E-10 63.1 2.9 30 9-38 46-75 (331)
204 2chg_A Replication factor C sm 97.9 8E-06 2.7E-10 57.5 3.7 25 9-33 38-62 (226)
205 2ehv_A Hypothetical protein PH 97.9 6.4E-06 2.2E-10 59.5 3.2 25 6-30 27-51 (251)
206 2qby_A CDC6 homolog 1, cell di 97.9 9.4E-06 3.2E-10 62.1 4.3 33 7-39 43-81 (386)
207 3pxg_A Negative regulator of g 97.9 9.6E-06 3.3E-10 64.5 4.4 26 8-33 200-225 (468)
208 3rhf_A Putative polyphosphate 97.9 0.00023 7.8E-09 52.6 11.3 33 8-40 74-109 (289)
209 1htw_A HI0065; nucleotide-bind 97.9 9E-06 3.1E-10 55.3 3.6 27 7-33 31-57 (158)
210 1c9k_A COBU, adenosylcobinamid 97.9 6.5E-06 2.2E-10 57.1 3.0 26 11-37 1-26 (180)
211 4fcw_A Chaperone protein CLPB; 97.9 8.4E-06 2.9E-10 60.9 3.8 24 10-33 48-71 (311)
212 1njg_A DNA polymerase III subu 97.9 9E-06 3.1E-10 58.0 3.7 26 9-34 45-70 (250)
213 2bjv_A PSP operon transcriptio 97.9 1.4E-05 4.7E-10 58.6 4.5 27 8-34 28-54 (265)
214 2qgz_A Helicase loader, putati 97.8 1.4E-05 4.9E-10 60.1 4.5 38 9-46 152-195 (308)
215 1fnn_A CDC6P, cell division co 97.8 1.4E-05 4.8E-10 61.4 4.5 24 10-33 45-68 (389)
216 2cvh_A DNA repair and recombin 97.8 1.3E-05 4.5E-10 56.7 3.9 37 5-41 16-54 (220)
217 3tqf_A HPR(Ser) kinase; transf 97.8 1.5E-05 5E-10 54.8 3.8 34 8-43 15-48 (181)
218 2v9p_A Replication protein E1; 97.8 1.4E-05 4.9E-10 60.0 4.1 32 6-37 123-154 (305)
219 4a74_A DNA repair and recombin 97.8 7.1E-06 2.4E-10 58.6 2.3 27 6-32 22-48 (231)
220 1ypw_A Transitional endoplasmi 97.8 6.7E-06 2.3E-10 69.5 2.4 34 6-39 508-541 (806)
221 3tif_A Uncharacterized ABC tra 97.8 1.1E-05 3.6E-10 58.5 3.0 28 6-33 28-55 (235)
222 2w0m_A SSO2452; RECA, SSPF, un 97.8 1.2E-05 4.2E-10 57.3 3.3 28 6-33 20-47 (235)
223 2eyu_A Twitching motility prot 97.8 1.3E-05 4.3E-10 59.0 3.4 28 6-33 22-49 (261)
224 2z4s_A Chromosomal replication 97.8 1.7E-05 5.7E-10 62.6 4.0 35 9-43 130-171 (440)
225 2orw_A Thymidine kinase; TMTK, 97.8 1.8E-05 6.1E-10 55.1 3.6 26 8-33 2-27 (184)
226 2i3b_A HCR-ntpase, human cance 97.8 1.9E-05 6.6E-10 55.2 3.7 24 10-33 2-25 (189)
227 1sxj_C Activator 1 40 kDa subu 97.8 1.8E-05 6.1E-10 60.2 3.8 24 10-33 47-70 (340)
228 2pcj_A ABC transporter, lipopr 97.7 1.5E-05 5.2E-10 57.2 2.9 27 7-33 28-54 (224)
229 3pxi_A Negative regulator of g 97.7 2.2E-05 7.7E-10 65.9 4.4 35 8-42 200-244 (758)
230 2cbz_A Multidrug resistance-as 97.7 1.6E-05 5.3E-10 57.7 3.0 28 6-33 28-55 (237)
231 1rj9_A FTSY, signal recognitio 97.7 2.2E-05 7.5E-10 59.0 3.9 26 8-33 101-126 (304)
232 1u0j_A DNA replication protein 97.7 2.7E-05 9.4E-10 57.2 4.3 28 8-35 103-130 (267)
233 1nij_A Hypothetical protein YJ 97.7 1.1E-05 3.9E-10 60.9 2.3 27 6-32 1-27 (318)
234 1n0w_A DNA repair protein RAD5 97.7 1.8E-05 6.2E-10 56.9 3.2 27 6-32 21-47 (243)
235 1sxj_D Activator 1 41 kDa subu 97.7 2.2E-05 7.4E-10 59.6 3.7 25 10-34 59-83 (353)
236 1b0u_A Histidine permease; ABC 97.7 2.2E-05 7.6E-10 57.7 3.3 28 6-33 29-56 (262)
237 2f1r_A Molybdopterin-guanine d 97.7 9.4E-06 3.2E-10 55.9 1.2 25 9-33 2-26 (171)
238 1cr0_A DNA primase/helicase; R 97.7 2.7E-05 9.3E-10 58.0 3.9 29 5-33 31-59 (296)
239 1sxj_E Activator 1 40 kDa subu 97.7 2.2E-05 7.6E-10 59.7 3.3 25 9-33 36-60 (354)
240 3gfo_A Cobalt import ATP-bindi 97.7 2.2E-05 7.5E-10 58.1 3.1 27 7-33 32-58 (275)
241 1iqp_A RFCS; clamp loader, ext 97.7 3.2E-05 1.1E-09 58.0 4.1 26 8-33 45-70 (327)
242 1sgw_A Putative ABC transporte 97.7 2.2E-05 7.6E-10 56.0 3.0 27 7-33 33-59 (214)
243 2r2a_A Uncharacterized protein 97.7 3.3E-05 1.1E-09 54.5 3.9 24 9-32 5-28 (199)
244 2qen_A Walker-type ATPase; unk 97.7 3.9E-05 1.3E-09 58.0 4.6 34 10-43 32-65 (350)
245 4g1u_C Hemin import ATP-bindin 97.7 2.4E-05 8.1E-10 57.7 3.2 27 7-33 35-61 (266)
246 1vma_A Cell division protein F 97.7 2.6E-05 8.9E-10 58.6 3.5 27 7-33 102-128 (306)
247 2zu0_C Probable ATP-dependent 97.7 2.8E-05 9.7E-10 57.3 3.6 27 6-32 43-69 (267)
248 3b9q_A Chloroplast SRP recepto 97.7 3E-05 1E-09 58.2 3.8 27 7-33 98-124 (302)
249 2olj_A Amino acid ABC transpor 97.7 2.6E-05 8.8E-10 57.4 3.3 28 6-33 47-74 (263)
250 2d2e_A SUFC protein; ABC-ATPas 97.7 3E-05 1E-09 56.6 3.6 26 7-32 27-52 (250)
251 2onk_A Molybdate/tungstate ABC 97.7 3E-05 1E-09 56.3 3.6 26 7-33 23-48 (240)
252 3e70_C DPA, signal recognition 97.7 2.7E-05 9.1E-10 59.1 3.5 27 7-33 127-153 (328)
253 2ixe_A Antigen peptide transpo 97.7 2.3E-05 7.8E-10 57.9 3.0 28 6-33 42-69 (271)
254 2ff7_A Alpha-hemolysin translo 97.7 2.4E-05 8.3E-10 57.0 3.1 27 7-33 33-59 (247)
255 2pze_A Cystic fibrosis transme 97.7 2.6E-05 8.9E-10 56.2 3.2 27 7-33 32-58 (229)
256 1g8p_A Magnesium-chelatase 38 97.7 1.6E-05 5.5E-10 60.3 2.2 25 10-34 46-70 (350)
257 1mv5_A LMRA, multidrug resista 97.7 2E-05 6.8E-10 57.3 2.6 28 6-33 25-52 (243)
258 3b85_A Phosphate starvation-in 97.7 2E-05 6.8E-10 56.0 2.5 24 8-31 21-44 (208)
259 2ghi_A Transport protein; mult 97.7 2.7E-05 9.3E-10 57.2 3.3 28 6-33 43-70 (260)
260 1jr3_A DNA polymerase III subu 97.6 3.5E-05 1.2E-09 58.9 4.0 27 9-35 38-64 (373)
261 1vpl_A ABC transporter, ATP-bi 97.6 2.9E-05 9.9E-10 56.9 3.3 28 6-33 38-65 (256)
262 1ji0_A ABC transporter; ATP bi 97.6 2.7E-05 9.3E-10 56.5 3.1 27 7-33 30-56 (240)
263 1g6h_A High-affinity branched- 97.6 2.8E-05 9.5E-10 57.0 3.1 27 7-33 31-57 (257)
264 2chq_A Replication factor C sm 97.6 3.7E-05 1.3E-09 57.4 3.8 25 9-33 38-62 (319)
265 1nrj_B SR-beta, signal recogni 97.6 4.5E-05 1.6E-09 53.9 4.0 27 7-33 10-36 (218)
266 2yz2_A Putative ABC transporte 97.6 2.9E-05 1E-09 57.2 3.0 28 6-33 30-57 (266)
267 2dr3_A UPF0273 protein PH0284; 97.6 3.1E-05 1.1E-09 55.7 3.1 27 6-32 20-46 (247)
268 2qi9_C Vitamin B12 import ATP- 97.6 3.4E-05 1.1E-09 56.3 3.2 27 7-33 24-50 (249)
269 3fvq_A Fe(3+) IONS import ATP- 97.6 3.8E-05 1.3E-09 58.9 3.5 28 6-33 27-54 (359)
270 1r6b_X CLPA protein; AAA+, N-t 97.6 5.1E-05 1.8E-09 63.7 4.5 34 11-44 490-525 (758)
271 2ihy_A ABC transporter, ATP-bi 97.6 3.7E-05 1.3E-09 57.0 3.2 27 7-33 45-71 (279)
272 3rlf_A Maltose/maltodextrin im 97.6 4.8E-05 1.6E-09 58.8 3.9 28 6-33 26-53 (381)
273 1sxj_B Activator 1 37 kDa subu 97.6 5E-05 1.7E-09 56.8 3.9 25 9-33 42-66 (323)
274 2nq2_C Hypothetical ABC transp 97.6 3.9E-05 1.3E-09 56.1 3.1 27 7-33 29-55 (253)
275 1svi_A GTP-binding protein YSX 97.6 4.6E-05 1.6E-09 52.8 3.4 29 4-32 18-46 (195)
276 2px0_A Flagellar biosynthesis 97.6 4.7E-05 1.6E-09 57.0 3.6 26 8-33 104-129 (296)
277 2gza_A Type IV secretion syste 97.6 3.9E-05 1.4E-09 59.0 3.3 27 7-33 173-199 (361)
278 2ewv_A Twitching motility prot 97.6 4.2E-05 1.4E-09 59.1 3.4 28 6-33 133-160 (372)
279 3jvv_A Twitching mobility prot 97.6 4.3E-05 1.5E-09 58.6 3.5 26 8-33 122-147 (356)
280 1nlf_A Regulatory protein REPA 97.6 3.5E-05 1.2E-09 57.0 2.8 27 6-32 27-53 (279)
281 2og2_A Putative signal recogni 97.6 5E-05 1.7E-09 58.3 3.7 27 7-33 155-181 (359)
282 2yyz_A Sugar ABC transporter, 97.6 5.2E-05 1.8E-09 58.2 3.8 28 6-33 26-53 (359)
283 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 3.7E-05 1.3E-09 61.6 3.1 26 9-34 41-66 (500)
284 1qvr_A CLPB protein; coiled co 97.6 4.8E-05 1.7E-09 64.7 3.9 26 8-33 190-215 (854)
285 2it1_A 362AA long hypothetical 97.6 5.5E-05 1.9E-09 58.1 3.9 28 6-33 26-53 (362)
286 1v43_A Sugar-binding transport 97.5 5.7E-05 1.9E-09 58.3 3.9 28 6-33 34-61 (372)
287 2xkx_A Disks large homolog 4; 97.5 0.00099 3.4E-08 55.7 11.5 150 7-169 529-708 (721)
288 1z47_A CYSA, putative ABC-tran 97.5 5.6E-05 1.9E-09 57.9 3.6 27 7-33 39-65 (355)
289 2b8t_A Thymidine kinase; deoxy 97.5 5.6E-05 1.9E-09 54.2 3.4 27 7-33 10-36 (223)
290 1ojl_A Transcriptional regulat 97.5 5.4E-05 1.8E-09 56.8 3.4 26 8-33 24-49 (304)
291 2yhs_A FTSY, cell division pro 97.5 6.6E-05 2.3E-09 59.8 4.0 27 7-33 291-317 (503)
292 3tui_C Methionine import ATP-b 97.5 6.6E-05 2.3E-09 57.7 3.9 28 6-33 51-78 (366)
293 3pqc_A Probable GTP-binding pr 97.5 7.3E-05 2.5E-09 51.6 3.8 28 5-32 19-46 (195)
294 2bbs_A Cystic fibrosis transme 97.5 4.7E-05 1.6E-09 56.8 2.7 28 6-33 61-88 (290)
295 1g29_1 MALK, maltose transport 97.5 6.8E-05 2.3E-09 57.8 3.6 27 7-33 27-53 (372)
296 3d31_A Sulfate/molybdate ABC t 97.5 4.1E-05 1.4E-09 58.6 2.3 28 6-33 23-50 (348)
297 1lw7_A Transcriptional regulat 97.5 5.1E-05 1.7E-09 58.3 2.8 28 9-36 170-197 (365)
298 2qm8_A GTPase/ATPase; G protei 97.5 7.5E-05 2.6E-09 56.9 3.7 28 6-33 52-79 (337)
299 3nh6_A ATP-binding cassette SU 97.5 3.4E-05 1.2E-09 58.0 1.7 28 6-33 77-104 (306)
300 3kl4_A SRP54, signal recogniti 97.5 5.8E-05 2E-09 59.3 3.0 26 8-33 96-121 (433)
301 3gd7_A Fusion complex of cysti 97.5 6.5E-05 2.2E-09 58.3 3.3 27 6-32 44-70 (390)
302 2vhj_A Ntpase P4, P4; non- hyd 97.5 6E-05 2E-09 56.9 2.9 33 8-40 122-156 (331)
303 2pjz_A Hypothetical protein ST 97.5 6.9E-05 2.4E-09 55.1 3.1 25 9-33 30-54 (263)
304 1p9r_A General secretion pathw 97.4 7.8E-05 2.7E-09 58.4 3.6 26 8-33 166-191 (418)
305 2npi_A Protein CLP1; CLP1-PCF1 97.4 7.6E-05 2.6E-09 59.2 3.4 27 7-33 136-162 (460)
306 1u94_A RECA protein, recombina 97.4 8.5E-05 2.9E-09 57.0 3.6 35 6-40 60-99 (356)
307 3dm5_A SRP54, signal recogniti 97.4 7.5E-05 2.6E-09 58.8 3.3 26 8-33 99-124 (443)
308 3hr8_A Protein RECA; alpha and 97.4 5.6E-05 1.9E-09 58.0 2.5 28 6-33 58-85 (356)
309 3tsz_A Tight junction protein 97.4 0.00089 3.1E-08 52.0 9.3 97 7-116 230-331 (391)
310 2www_A Methylmalonic aciduria 97.4 8.7E-05 3E-09 56.8 3.5 26 8-33 73-98 (349)
311 1a5t_A Delta prime, HOLB; zinc 97.4 0.00011 3.7E-09 55.8 4.0 27 9-35 24-50 (334)
312 2wsm_A Hydrogenase expression/ 97.4 8.3E-05 2.8E-09 52.7 3.1 26 8-33 29-54 (221)
313 1zu4_A FTSY; GTPase, signal re 97.4 9E-05 3.1E-09 56.0 3.5 27 7-33 103-129 (320)
314 1xx6_A Thymidine kinase; NESG, 97.4 0.00012 4E-09 51.3 3.7 28 6-33 5-32 (191)
315 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00014 4.6E-09 61.1 4.7 26 8-33 206-231 (758)
316 1pzn_A RAD51, DNA repair and r 97.4 5.8E-05 2E-09 57.8 2.3 28 6-33 128-155 (349)
317 2atv_A RERG, RAS-like estrogen 97.4 0.0001 3.4E-09 51.3 3.4 26 7-32 26-51 (196)
318 1upt_A ARL1, ADP-ribosylation 97.4 0.00012 4E-09 49.4 3.6 28 5-32 3-30 (171)
319 3bc1_A RAS-related protein RAB 97.4 7.8E-05 2.7E-09 51.3 2.7 25 8-32 10-34 (195)
320 1oxx_K GLCV, glucose, ABC tran 97.4 4.8E-05 1.6E-09 58.3 1.8 28 6-33 28-55 (353)
321 3sop_A Neuronal-specific septi 97.4 8.2E-05 2.8E-09 54.9 2.9 24 10-33 3-26 (270)
322 1oix_A RAS-related protein RAB 97.4 7.2E-05 2.5E-09 52.0 2.5 23 10-32 30-52 (191)
323 2zts_A Putative uncharacterize 97.4 9.5E-05 3.3E-09 53.2 3.2 26 6-31 27-52 (251)
324 3p32_A Probable GTPase RV1496/ 97.4 0.0001 3.5E-09 56.5 3.5 27 7-33 77-103 (355)
325 2wji_A Ferrous iron transport 97.4 8.7E-05 3E-09 50.2 2.8 24 9-32 3-26 (165)
326 2pt7_A CAG-ALFA; ATPase, prote 97.4 7.6E-05 2.6E-09 56.7 2.6 26 8-33 170-195 (330)
327 3k1j_A LON protease, ATP-depen 97.4 0.00012 4E-09 60.1 3.8 27 8-34 59-85 (604)
328 2dyk_A GTP-binding protein; GT 97.4 0.00012 4E-09 48.9 3.2 23 10-32 2-24 (161)
329 2zr9_A Protein RECA, recombina 97.4 9.2E-05 3.2E-09 56.7 3.0 36 6-41 58-98 (349)
330 3shw_A Tight junction protein 97.4 0.00032 1.1E-08 55.6 6.1 92 7-110 222-318 (468)
331 2fna_A Conserved hypothetical 97.4 0.00013 4.5E-09 55.1 3.8 32 10-41 31-64 (357)
332 3lda_A DNA repair protein RAD5 97.4 8.9E-05 3E-09 57.7 2.8 25 6-30 175-199 (400)
333 3kta_A Chromosome segregation 97.3 0.00015 5.3E-09 49.8 3.8 25 10-34 27-51 (182)
334 3pxi_A Negative regulator of g 97.3 0.00015 5.1E-09 60.9 4.2 35 11-45 523-562 (758)
335 2fn4_A P23, RAS-related protei 97.3 0.00012 4.1E-09 49.8 3.0 25 8-32 8-32 (181)
336 2lkc_A Translation initiation 97.3 0.00021 7.1E-09 48.5 4.2 25 7-31 6-30 (178)
337 2v3c_C SRP54, signal recogniti 97.3 0.00012 4E-09 57.6 3.3 26 8-33 98-123 (432)
338 3bh0_A DNAB-like replicative h 97.3 0.00018 6.2E-09 54.2 4.2 29 5-33 64-92 (315)
339 2wjg_A FEOB, ferrous iron tran 97.3 0.00012 4.3E-09 50.2 3.1 25 8-32 6-30 (188)
340 2z43_A DNA repair and recombin 97.3 0.00016 5.4E-09 54.7 3.8 28 6-33 104-131 (324)
341 1knx_A Probable HPR(Ser) kinas 97.3 0.00013 4.5E-09 54.8 3.3 33 8-42 146-178 (312)
342 2oap_1 GSPE-2, type II secreti 97.3 0.00011 3.7E-09 59.1 3.0 27 7-33 258-284 (511)
343 1w5s_A Origin recognition comp 97.3 0.00011 3.7E-09 56.9 2.9 26 8-33 49-76 (412)
344 2ged_A SR-beta, signal recogni 97.3 0.0002 6.9E-09 49.4 4.0 26 7-32 46-71 (193)
345 2f9l_A RAB11B, member RAS onco 97.3 0.00011 3.7E-09 51.3 2.6 24 9-32 5-28 (199)
346 1ko7_A HPR kinase/phosphatase; 97.3 0.00018 6E-09 54.2 3.9 31 8-39 143-173 (314)
347 1v5w_A DMC1, meiotic recombina 97.3 0.00015 5.2E-09 55.3 3.5 28 5-32 118-145 (343)
348 2hf9_A Probable hydrogenase ni 97.3 0.00014 4.9E-09 51.6 3.2 26 8-33 37-62 (226)
349 1pui_A ENGB, probable GTP-bind 97.3 7.2E-05 2.5E-09 52.5 1.5 26 6-31 23-48 (210)
350 1z2a_A RAS-related protein RAB 97.3 0.00014 4.7E-09 48.9 2.8 25 8-32 4-28 (168)
351 2ce2_X GTPase HRAS; signaling 97.3 0.00013 4.4E-09 48.7 2.7 24 9-32 3-26 (166)
352 1kao_A RAP2A; GTP-binding prot 97.3 0.00015 5.2E-09 48.4 3.0 25 8-32 2-26 (167)
353 2rcn_A Probable GTPase ENGC; Y 97.3 0.00018 6.1E-09 55.2 3.6 26 8-33 214-239 (358)
354 2qag_B Septin-6, protein NEDD5 97.3 0.00018 6.3E-09 56.3 3.6 27 6-32 37-65 (427)
355 2yv5_A YJEQ protein; hydrolase 97.2 0.0002 6.9E-09 53.6 3.6 25 8-33 164-188 (302)
356 2y8e_A RAB-protein 6, GH09086P 97.2 0.00015 5.2E-09 49.2 2.7 22 10-31 15-36 (179)
357 2r6a_A DNAB helicase, replicat 97.2 0.00025 8.7E-09 56.1 4.2 29 5-33 199-227 (454)
358 1xp8_A RECA protein, recombina 97.2 0.0002 6.8E-09 55.1 3.5 36 6-41 71-111 (366)
359 3bwd_D RAC-like GTP-binding pr 97.2 0.00026 8.9E-09 48.2 3.8 27 6-32 5-31 (182)
360 2gj8_A MNME, tRNA modification 97.2 0.00016 5.3E-09 49.4 2.7 25 8-32 3-27 (172)
361 3e1s_A Exodeoxyribonuclease V, 97.2 0.00022 7.4E-09 58.1 3.9 26 8-33 203-228 (574)
362 1qvr_A CLPB protein; coiled co 97.2 0.00017 5.7E-09 61.4 3.3 24 10-33 589-612 (854)
363 1u8z_A RAS-related protein RAL 97.2 0.00017 6E-09 48.2 2.8 25 8-32 3-27 (168)
364 1ky3_A GTP-binding protein YPT 97.2 0.00018 6.1E-09 48.9 2.9 25 8-32 7-31 (182)
365 2atx_A Small GTP binding prote 97.2 0.00012 4.2E-09 50.6 2.0 25 8-32 17-41 (194)
366 2p67_A LAO/AO transport system 97.2 0.00019 6.7E-09 54.6 3.2 27 7-33 54-80 (341)
367 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00025 8.7E-09 57.3 3.9 28 6-33 44-71 (538)
368 2zej_A Dardarin, leucine-rich 97.2 0.00024 8.3E-09 48.8 3.3 22 10-31 3-24 (184)
369 3f9v_A Minichromosome maintena 97.2 0.00011 3.8E-09 60.1 1.7 30 10-39 328-357 (595)
370 1ls1_A Signal recognition part 97.2 0.00024 8.2E-09 53.1 3.4 26 8-33 97-122 (295)
371 3oes_A GTPase rhebl1; small GT 97.2 0.00018 6.1E-09 50.2 2.5 26 7-32 22-47 (201)
372 3clv_A RAB5 protein, putative; 97.2 0.00031 1.1E-08 48.5 3.8 25 8-32 6-30 (208)
373 3upu_A ATP-dependent DNA helic 97.2 0.00029 9.9E-09 55.8 4.0 24 10-33 46-69 (459)
374 3con_A GTPase NRAS; structural 97.2 0.00018 6.1E-09 49.6 2.4 25 8-32 20-44 (190)
375 1yrb_A ATP(GTP)binding protein 97.2 0.00036 1.2E-08 50.7 4.2 27 7-33 12-38 (262)
376 2dpy_A FLII, flagellum-specifi 97.2 0.00027 9.1E-09 55.7 3.7 29 5-33 153-181 (438)
377 2p5s_A RAS and EF-hand domain 97.2 0.00025 8.6E-09 49.3 3.2 26 7-32 26-51 (199)
378 1c1y_A RAS-related protein RAP 97.2 0.00024 8.1E-09 47.6 3.0 24 9-32 3-26 (167)
379 4dhe_A Probable GTP-binding pr 97.1 0.00012 4.1E-09 51.8 1.5 29 4-32 24-52 (223)
380 2hxs_A RAB-26, RAS-related pro 97.1 0.00028 9.7E-09 47.8 3.3 25 8-32 5-29 (178)
381 3lxx_A GTPase IMAP family memb 97.1 0.00021 7.1E-09 51.4 2.7 25 8-32 28-52 (239)
382 3b5x_A Lipid A export ATP-bind 97.1 0.00025 8.7E-09 57.8 3.5 27 7-33 367-393 (582)
383 3k53_A Ferrous iron transport 97.1 0.00024 8.3E-09 52.2 3.0 25 8-32 2-26 (271)
384 2nzj_A GTP-binding protein REM 97.1 0.00025 8.4E-09 48.0 2.9 25 8-32 3-27 (175)
385 1u0l_A Probable GTPase ENGC; p 97.1 0.00028 9.5E-09 52.8 3.4 26 8-33 168-193 (301)
386 2erx_A GTP-binding protein DI- 97.1 0.00023 8E-09 47.8 2.6 23 9-31 3-25 (172)
387 2j37_W Signal recognition part 97.1 0.00025 8.5E-09 56.8 3.2 26 8-33 100-125 (504)
388 2i1q_A DNA repair and recombin 97.1 0.00019 6.5E-09 54.1 2.4 27 6-32 95-121 (322)
389 2obl_A ESCN; ATPase, hydrolase 97.1 0.00025 8.7E-09 54.2 3.0 28 6-33 68-95 (347)
390 3t5g_A GTP-binding protein RHE 97.1 0.00017 5.7E-09 49.2 1.9 24 8-31 5-28 (181)
391 2bov_A RAla, RAS-related prote 97.1 0.00028 9.4E-09 49.1 3.0 25 8-32 13-37 (206)
392 3q72_A GTP-binding protein RAD 97.1 0.00033 1.1E-08 46.9 3.2 23 9-31 2-24 (166)
393 1tq4_A IIGP1, interferon-induc 97.1 0.00025 8.6E-09 55.4 2.9 24 8-31 68-91 (413)
394 1vg8_A RAS-related protein RAB 97.1 0.00027 9.2E-09 49.3 2.9 26 7-32 6-31 (207)
395 3b60_A Lipid A export ATP-bind 97.1 0.00026 8.8E-09 57.8 3.0 27 7-33 367-393 (582)
396 3euj_A Chromosome partition pr 97.1 0.00037 1.3E-08 55.5 3.8 26 7-33 28-53 (483)
397 2bme_A RAB4A, RAS-related prot 97.1 0.00024 8.3E-09 48.6 2.4 25 8-32 9-33 (186)
398 3cbq_A GTP-binding protein REM 97.1 0.0002 6.9E-09 49.9 2.0 24 8-31 22-45 (195)
399 2q6t_A DNAB replication FORK h 97.1 0.00043 1.5E-08 54.6 4.0 29 5-33 196-224 (444)
400 3j16_B RLI1P; ribosome recycli 97.1 0.00041 1.4E-08 56.9 3.9 27 7-33 101-127 (608)
401 3qf4_B Uncharacterized ABC tra 97.0 0.00029 9.8E-09 57.7 3.0 28 6-33 378-405 (598)
402 1m2o_B GTP-binding protein SAR 97.0 0.00038 1.3E-08 48.1 3.2 25 8-32 22-46 (190)
403 2qu8_A Putative nucleolar GTP- 97.0 0.0004 1.4E-08 49.5 3.4 26 7-32 27-52 (228)
404 4a1f_A DNAB helicase, replicat 97.0 0.00048 1.6E-08 52.4 4.0 29 5-33 42-70 (338)
405 1z0j_A RAB-22, RAS-related pro 97.0 0.00042 1.4E-08 46.5 3.3 25 8-32 5-29 (170)
406 1ek0_A Protein (GTP-binding pr 97.0 0.00043 1.5E-08 46.4 3.4 23 10-32 4-26 (170)
407 1j8m_F SRP54, signal recogniti 97.0 0.00029 1E-08 52.7 2.7 25 9-33 98-122 (297)
408 3tw8_B RAS-related protein RAB 97.0 0.00027 9.4E-09 47.9 2.4 25 7-31 7-31 (181)
409 1tf7_A KAIC; homohexamer, hexa 97.0 0.0003 1E-08 56.7 2.8 24 6-29 36-59 (525)
410 2yl4_A ATP-binding cassette SU 97.0 0.00028 9.6E-09 57.7 2.7 27 7-33 368-394 (595)
411 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00046 1.6E-08 46.7 3.4 25 8-32 6-30 (177)
412 2b6h_A ADP-ribosylation factor 97.0 0.00037 1.3E-08 48.3 2.9 25 7-31 27-51 (192)
413 1z08_A RAS-related protein RAB 97.0 0.00049 1.7E-08 46.2 3.5 25 8-32 5-29 (170)
414 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00044 1.5E-08 46.3 3.2 25 9-33 23-47 (149)
415 2xxa_A Signal recognition part 97.0 0.0004 1.4E-08 54.6 3.4 26 8-33 99-124 (433)
416 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00032 1.1E-08 48.0 2.5 24 9-32 4-27 (189)
417 2j9r_A Thymidine kinase; TK1, 97.0 0.0005 1.7E-08 48.8 3.5 27 7-33 26-52 (214)
418 3ihw_A Centg3; RAS, centaurin, 97.0 0.00046 1.6E-08 47.5 3.3 25 8-32 19-43 (184)
419 1z0f_A RAB14, member RAS oncog 97.0 0.00035 1.2E-08 47.3 2.6 25 8-32 14-38 (179)
420 3q85_A GTP-binding protein REM 97.0 0.00047 1.6E-08 46.3 3.2 22 10-31 3-24 (169)
421 3ozx_A RNAse L inhibitor; ATP 97.0 0.00037 1.3E-08 56.3 3.2 27 7-33 23-49 (538)
422 2oil_A CATX-8, RAS-related pro 97.0 0.00036 1.2E-08 48.1 2.7 24 9-32 25-48 (193)
423 3bk7_A ABC transporter ATP-bin 97.0 0.00041 1.4E-08 56.9 3.4 28 6-33 114-141 (607)
424 2iwr_A Centaurin gamma 1; ANK 97.0 0.00035 1.2E-08 47.5 2.6 25 8-32 6-30 (178)
425 2a9k_A RAS-related protein RAL 97.0 0.00039 1.3E-08 47.4 2.8 25 8-32 17-41 (187)
426 3ozx_A RNAse L inhibitor; ATP 97.0 0.00039 1.3E-08 56.2 3.2 27 7-33 292-318 (538)
427 1g16_A RAS-related protein SEC 97.0 0.00045 1.6E-08 46.3 3.1 23 10-32 4-26 (170)
428 2ffh_A Protein (FFH); SRP54, s 97.0 0.00043 1.5E-08 54.3 3.3 26 8-33 97-122 (425)
429 2fh5_B SR-beta, signal recogni 97.0 0.00055 1.9E-08 48.1 3.5 25 8-32 6-30 (214)
430 1t9h_A YLOQ, probable GTPase E 97.0 0.00014 4.7E-09 54.7 0.4 25 8-32 172-196 (307)
431 3t1o_A Gliding protein MGLA; G 97.0 0.00026 9E-09 48.7 1.8 26 8-33 13-38 (198)
432 2j0v_A RAC-like GTP-binding pr 97.0 0.0005 1.7E-08 48.2 3.2 26 7-32 7-32 (212)
433 1moz_A ARL1, ADP-ribosylation 97.0 0.00027 9.3E-09 48.2 1.8 24 7-30 16-39 (183)
434 2vf7_A UVRA2, excinuclease ABC 97.0 0.00029 9.9E-09 59.7 2.3 21 7-27 34-54 (842)
435 1z06_A RAS-related protein RAB 97.0 0.00044 1.5E-08 47.6 2.9 25 8-32 19-43 (189)
436 1ksh_A ARF-like protein 2; sma 97.0 0.00048 1.6E-08 47.2 3.0 25 7-31 16-40 (186)
437 1r2q_A RAS-related protein RAB 97.0 0.00058 2E-08 45.7 3.4 24 8-31 5-28 (170)
438 3iby_A Ferrous iron transport 97.0 0.00046 1.6E-08 50.4 3.0 23 10-32 2-24 (256)
439 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00054 1.9E-08 55.4 3.7 27 7-33 310-336 (538)
440 3cph_A RAS-related protein SEC 96.9 0.00051 1.7E-08 48.1 3.2 26 7-32 18-43 (213)
441 3kkq_A RAS-related protein M-R 96.9 0.00046 1.6E-08 47.1 2.8 24 9-32 18-41 (183)
442 2xtp_A GTPase IMAP family memb 96.9 0.00046 1.6E-08 50.2 3.0 25 8-32 21-45 (260)
443 3io5_A Recombination and repai 96.9 0.00048 1.7E-08 51.9 3.1 26 6-32 26-51 (333)
444 1fzq_A ADP-ribosylation factor 96.9 0.00045 1.5E-08 47.4 2.8 25 8-32 15-39 (181)
445 2cxx_A Probable GTP-binding pr 96.9 0.00047 1.6E-08 47.2 2.9 23 10-32 2-24 (190)
446 1tf7_A KAIC; homohexamer, hexa 96.9 0.00041 1.4E-08 55.9 2.9 28 6-33 278-305 (525)
447 2gf9_A RAS-related protein RAB 96.9 0.00052 1.8E-08 47.2 3.1 24 9-32 22-45 (189)
448 3bgw_A DNAB-like replicative h 96.9 0.00061 2.1E-08 53.8 3.8 29 5-33 193-221 (444)
449 4a82_A Cystic fibrosis transme 96.9 0.00026 8.9E-09 57.7 1.7 28 6-33 364-391 (578)
450 1w36_D RECD, exodeoxyribonucle 96.9 0.00055 1.9E-08 56.2 3.6 26 8-33 163-188 (608)
451 1r8s_A ADP-ribosylation factor 96.9 0.00066 2.3E-08 45.3 3.5 22 11-32 2-23 (164)
452 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00077 2.6E-08 52.2 4.3 26 8-33 34-59 (392)
453 3bk7_A ABC transporter ATP-bin 96.9 0.0006 2E-08 55.9 3.7 27 7-33 380-406 (607)
454 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00048 1.6E-08 47.0 2.7 25 8-32 4-28 (186)
455 1zbd_A Rabphilin-3A; G protein 96.9 0.00046 1.6E-08 48.0 2.6 25 8-32 7-31 (203)
456 1zj6_A ADP-ribosylation factor 96.9 0.00055 1.9E-08 47.0 3.0 25 7-31 14-38 (187)
457 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00061 2.1E-08 46.7 3.1 25 8-32 6-30 (184)
458 2ygr_A Uvrabc system protein A 96.9 0.00033 1.1E-08 60.1 1.9 20 7-26 44-63 (993)
459 2gf0_A GTP-binding protein DI- 96.9 0.00067 2.3E-08 46.9 3.2 24 8-31 7-30 (199)
460 2r6f_A Excinuclease ABC subuni 96.9 0.00034 1.2E-08 59.8 2.0 20 7-26 42-61 (972)
461 3pih_A Uvrabc system protein A 96.9 0.0003 1E-08 60.1 1.7 21 6-26 21-41 (916)
462 1f6b_A SAR1; gtpases, N-termin 96.9 0.00043 1.5E-08 48.2 2.3 24 8-31 24-47 (198)
463 3qf4_A ABC transporter, ATP-bi 96.9 0.00038 1.3E-08 56.9 2.2 28 6-33 366-393 (587)
464 2a5j_A RAS-related protein RAB 96.9 0.00066 2.2E-08 46.8 3.2 24 9-32 21-44 (191)
465 2h17_A ADP-ribosylation factor 96.9 0.00044 1.5E-08 47.3 2.2 26 7-32 19-44 (181)
466 2efe_B Small GTP-binding prote 96.9 0.00078 2.7E-08 45.7 3.5 25 8-32 11-35 (181)
467 3j16_B RLI1P; ribosome recycli 96.9 0.00074 2.5E-08 55.3 3.9 25 9-33 378-402 (608)
468 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.00082 2.8E-08 52.2 3.9 25 7-31 18-42 (392)
469 2g6b_A RAS-related protein RAB 96.9 0.00077 2.6E-08 45.7 3.4 25 8-32 9-33 (180)
470 4gzl_A RAS-related C3 botulinu 96.9 0.0006 2.1E-08 47.7 2.9 25 8-32 29-53 (204)
471 3szr_A Interferon-induced GTP- 96.9 0.00042 1.4E-08 56.8 2.3 24 9-32 45-68 (608)
472 2bcg_Y Protein YP2, GTP-bindin 96.8 0.0005 1.7E-08 48.0 2.4 25 8-32 7-31 (206)
473 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00063 2.1E-08 52.3 3.2 24 7-30 31-54 (362)
474 4b3f_X DNA-binding protein smu 96.8 0.00077 2.6E-08 55.6 3.9 26 8-33 204-229 (646)
475 4bas_A ADP-ribosylation factor 96.8 0.00056 1.9E-08 47.3 2.6 25 7-31 15-39 (199)
476 2fg5_A RAB-22B, RAS-related pr 96.8 0.00047 1.6E-08 47.6 2.2 25 8-32 22-46 (192)
477 2q3h_A RAS homolog gene family 96.8 0.00068 2.3E-08 47.1 3.0 26 7-32 18-43 (201)
478 3tkl_A RAS-related protein RAB 96.8 0.0006 2E-08 47.0 2.7 24 9-32 16-39 (196)
479 3llu_A RAS-related GTP-binding 96.8 0.00066 2.2E-08 47.1 2.9 26 7-32 18-43 (196)
480 2j1l_A RHO-related GTP-binding 96.8 0.00057 2E-08 48.2 2.6 24 8-31 33-56 (214)
481 1zd9_A ADP-ribosylation factor 96.8 0.00056 1.9E-08 47.1 2.4 24 9-32 22-45 (188)
482 1z6t_A APAF-1, apoptotic prote 96.8 0.00058 2E-08 55.5 2.9 24 8-31 146-169 (591)
483 3ice_A Transcription terminati 96.8 0.00099 3.4E-08 51.6 3.9 28 5-32 170-197 (422)
484 2gno_A DNA polymerase III, gam 96.8 0.00058 2E-08 51.2 2.6 24 9-32 18-41 (305)
485 3q3j_B RHO-related GTP-binding 96.8 0.00078 2.7E-08 47.6 3.2 26 7-32 25-50 (214)
486 1gwn_A RHO-related GTP-binding 96.8 0.00059 2E-08 47.9 2.5 25 8-32 27-51 (205)
487 1qhl_A Protein (cell division 96.8 8.3E-05 2.8E-09 53.5 -2.0 23 11-33 29-51 (227)
488 1ega_A Protein (GTP-binding pr 96.8 0.00076 2.6E-08 50.4 3.2 25 8-32 7-31 (301)
489 3dz8_A RAS-related protein RAB 96.8 0.00087 3E-08 46.2 3.2 25 8-32 22-46 (191)
490 3cmu_A Protein RECA, recombina 96.8 0.00079 2.7E-08 61.7 3.7 36 6-41 1424-1464(2050)
491 3c5c_A RAS-like protein 12; GD 96.8 0.00075 2.6E-08 46.5 2.9 25 8-32 20-44 (187)
492 3i8s_A Ferrous iron transport 96.8 0.00076 2.6E-08 49.7 3.0 25 8-32 2-26 (274)
493 2fu5_C RAS-related protein RAB 96.8 0.00035 1.2E-08 47.7 1.1 24 8-31 7-30 (183)
494 2fv8_A H6, RHO-related GTP-bin 96.8 0.00055 1.9E-08 47.9 2.1 25 8-32 24-48 (207)
495 2qnr_A Septin-2, protein NEDD5 96.8 0.00058 2E-08 51.1 2.3 22 10-31 19-40 (301)
496 1x3s_A RAS-related protein RAB 96.7 0.001 3.5E-08 45.7 3.4 25 8-32 14-38 (195)
497 1wb9_A DNA mismatch repair pro 96.7 0.00095 3.2E-08 56.4 3.7 25 7-31 605-629 (800)
498 2iw3_A Elongation factor 3A; a 96.7 0.00095 3.3E-08 57.4 3.6 25 7-31 459-483 (986)
499 3b1v_A Ferrous iron uptake tra 96.7 0.00093 3.2E-08 49.3 3.1 24 9-32 3-26 (272)
500 2f7s_A C25KG, RAS-related prot 96.7 0.00077 2.6E-08 47.4 2.6 24 9-32 25-48 (217)
No 1
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.96 E-value=1e-28 Score=173.55 Aligned_cols=171 Identities=53% Similarity=0.957 Sum_probs=137.5
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEE
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIV 82 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vi 82 (176)
.+.++++++|+|+|+|||||||+++.|++.+|+.+++.|++++....+..++......++.++.+.+.+...+..+++|+
T Consensus 5 ~~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv 84 (180)
T 3iij_A 5 SPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIV 84 (180)
T ss_dssp -CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEE
T ss_pred CcccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEE
Confidence 34456778999999999999999999999999999999999887755544444444444556667777777776788889
Q ss_pred cCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHH
Q 030477 83 DYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162 (176)
Q Consensus 83 d~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i 162 (176)
+......++..+++.+|||++|++++.+|+.+|++..+...+....+.+...+.++.+.|..+.++++++.+++++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~~~~~ev~~~v 164 (180)
T 3iij_A 85 DYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNV 164 (180)
T ss_dssp ECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHHH
T ss_pred EechhhhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEcCCCCHHHHHHHH
Confidence 88877788776678999999999999999999987655554444445677778888888888889999988999999999
Q ss_pred HHHHHHHHhhc
Q 030477 163 AILTDWVRNWQ 173 (176)
Q Consensus 163 ~~~~~~~~~~~ 173 (176)
.+++++++.|.
T Consensus 165 ~~i~~~l~~~~ 175 (180)
T 3iij_A 165 DQILKWIEQWI 175 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988875
No 2
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.96 E-value=1.6e-27 Score=168.10 Aligned_cols=170 Identities=42% Similarity=0.739 Sum_probs=126.3
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHh-cCCeEeehhHHHhhcccCCCchhhhccccc---chHHHHHHHHHHh-hcCC
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAES-TQLRHINIGELVREKNLHDGWDDELECHVI---NEDLVCDELEDIM-EQGG 79 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~i~~~~-~~~~ 79 (176)
.++++++|+|+|+|||||||+++.|++. +|++++++|++.+.......+++.+...++ .++.+++.++..+ ..++
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~ 85 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGN 85 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCC
Confidence 3456789999999999999999999999 799999999999887665555555554454 4455566666655 5567
Q ss_pred eEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHH
Q 030477 80 NIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDIT 159 (176)
Q Consensus 80 ~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~ 159 (176)
++++......++...++.+|||++|++++.+|+.+|++..+........+.+.....++.+.|..+.++++|+.+++++.
T Consensus 86 ~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~~~~vi~~n~~~~~~~~ 165 (184)
T 1y63_A 86 HVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMA 165 (184)
T ss_dssp EEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHH
T ss_pred EEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhccCcEEECCCCCHHHHH
Confidence 88887766667655567899999999999999999876544443333233345556666777876678888888999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030477 160 RNIAILTDWVRNWQP 174 (176)
Q Consensus 160 ~~i~~~~~~~~~~~~ 174 (176)
+.+.++++++..|..
T Consensus 166 ~~v~~i~~~l~~~~~ 180 (184)
T 1y63_A 166 ATVEEIRERVEVLKV 180 (184)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988874
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.89 E-value=1.8e-22 Score=145.25 Aligned_cols=161 Identities=22% Similarity=0.342 Sum_probs=107.9
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh-
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM- 75 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~- 75 (176)
...+.++++|+|.|||||||+|+|+.|++++|+++++++++++..... ...+.....+ +...+.+.+.+...+
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~ 102 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI 102 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 345678889999999999999999999999999999999999875322 2223222222 123344444444322
Q ss_pred ----hcCCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHH
Q 030477 76 ----EQGGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEE 137 (176)
Q Consensus 76 ----~~~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~ 137 (176)
...++|+| +||++ .++.+|+|++|.+++.+|+..|.....+..++.+ ..++..+.++
T Consensus 103 ~~~~~~~g~ilD-----GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~ 177 (217)
T 3umf_A 103 KLVDKNCHFLID-----GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNEL 177 (217)
T ss_dssp HHTTTCSEEEEE-----TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHH
T ss_pred hccccccCcccc-----cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 34579999 77774 3678999999999999999988643333332222 2344444443
Q ss_pred H---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477 138 A---KESYPE-DIVLALKSD-TIEDITRNIAILTDW 168 (176)
Q Consensus 138 ~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~ 168 (176)
. .+.|.. +.++.+|+. ++++|.+.|..+++.
T Consensus 178 t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 178 TKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp THHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 3 335655 567778876 899999999888763
No 4
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.85 E-value=1.5e-20 Score=134.51 Aligned_cols=153 Identities=23% Similarity=0.417 Sum_probs=105.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh-hcCCeEE
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM-EQGGNIV 82 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~-~~~~~vi 82 (176)
++|+|.|||||||+|+|+.|++++|++++++++++|.... ....+.....+ +...+.+.+.+...+ ...++++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~il 80 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIF 80 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEe
Confidence 4789999999999999999999999999999999987532 12222222111 234566677777655 4468999
Q ss_pred cCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCc--------------------cccchh
Q 030477 83 DYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGA--------------------KLTNNI 126 (176)
Q Consensus 83 d~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~--------------------~~~~~~ 126 (176)
| +||++ .++.|++|++|.+++.+|+..|..... +..++.
T Consensus 81 D-----GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~ 155 (206)
T 3sr0_A 81 D-----GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP 155 (206)
T ss_dssp E-----SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred c-----CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence 9 77774 357899999999999999998842110 111111
Q ss_pred H--HHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 127 E--CEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 127 ~--~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
+ ..++..+.++.. +.|.+ +.++.+|+. ++++|.+.|..++.
T Consensus 156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 1 124444444432 34555 567778775 89999999988874
No 5
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.6e-20 Score=133.72 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=101.4
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh----cccccchHHHHHHHHHHhhcCCe
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL----ECHVINEDLVCDELEDIMEQGGN 80 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~ 80 (176)
.|.++.+|+|+|+|||||||+++.|++.+|+++++.|++...... .....-+ ...+. ..-...+..+....++
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~--~~e~~~l~~l~~~~~~ 97 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFR--ELERNMLHEVAEFENV 97 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHH--HHHHHHHHHHTTCSSE
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHH--HHHHHHHHHHhhcCCc
Confidence 345778999999999999999999999999999999998765421 1111100 00000 1112223334455677
Q ss_pred EEcCCCCCCCCCC------cccEEEEEeCChHHHHHHHh-hcCCCCccccchhH---HHHHHHHHHHHHhcCCC-CcEEE
Q 030477 81 IVDYHGCDFFPER------WFDRVVVLQTENSVLYDRLT-KRGYTGAKLTNNIE---CEIFQVLLEEAKESYPE-DIVLA 149 (176)
Q Consensus 81 vid~~~~~~~~~~------~~~~vi~l~~~~~~~~~R~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~ 149 (176)
|++.......... ..+.+|||++|++++.+|+. .|. .++....... .+.+..++..+.+.|.. +.+|+
T Consensus 98 vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~-~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Id 176 (199)
T 3vaa_A 98 VISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQ-QRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFN 176 (199)
T ss_dssp EEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGG-GCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred EEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCC-CCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 7763221111111 25789999999999999998 442 2233222111 34567777777777766 56677
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q 030477 150 LKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 150 ~~~~s~~ev~~~i~~~~~~~ 169 (176)
+++.+++++.+.|...++.+
T Consensus 177 t~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 177 ADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp CCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 76668999988888877654
No 6
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.84 E-value=5.8e-20 Score=130.09 Aligned_cols=162 Identities=17% Similarity=0.284 Sum_probs=98.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHH----HHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDL----VCDELEDIM 75 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~----l~~~i~~~~ 75 (176)
|.++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+...... ....+. +.+.+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~ 85 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV 85 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999998876421 11111111111 111122 223333333
Q ss_pred -hcCCeEEcCCCCCC---------CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHHHh---
Q 030477 76 -EQGGNIVDYHGCDF---------FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEAKE--- 140 (176)
Q Consensus 76 -~~~~~vid~~~~~~---------~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~--- 140 (176)
.++++|+|...... + ..++.+|||++|++++.+|+..|+...++.....+ ..++..++....+
T Consensus 86 ~~~~~vi~d~~~~~~~~~~~~~~~~--~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 163 (196)
T 2c95_A 86 NTSKGFLIDGYPREVQQGEEFERRI--GQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIA 163 (196)
T ss_dssp TTCSCEEEESCCCSHHHHHHHHHHT--CCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHH
T ss_pred ccCCcEEEeCCCCCHHHHHHHHHhc--CCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34678888522110 1 23678999999999999999988643333322111 2234444433322
Q ss_pred cCCC-CcEEEecC-CCHHHHHHHHHHHHHHH
Q 030477 141 SYPE-DIVLALKS-DTIEDITRNIAILTDWV 169 (176)
Q Consensus 141 ~~~~-~~~i~~~~-~s~~ev~~~i~~~~~~~ 169 (176)
.|.. +.++.+++ .+++++.+.|..+++.+
T Consensus 164 ~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 164 FYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 2332 34444444 48999999988887643
No 7
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.83 E-value=1.1e-19 Score=128.16 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=89.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCc---hhhhcccccch-H----HHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGW---DDELECHVINE-D----LVCDELEDI 74 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~----~l~~~i~~~ 74 (176)
++++|+|+|+|||||||+++.|++++| +++++.+++++........ ..+...+.... . .+.+.+...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEM 81 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999998 9999999887654211111 01111110111 1 112223333
Q ss_pred hhcCCeEEcCCCC-----CC--------CCCCcccEEEEEeCChHHHHH-HHhh--cCCCCccccchhHHHHHHHHHHHH
Q 030477 75 MEQGGNIVDYHGC-----DF--------FPERWFDRVVVLQTENSVLYD-RLTK--RGYTGAKLTNNIECEIFQVLLEEA 138 (176)
Q Consensus 75 ~~~~~~vid~~~~-----~~--------~~~~~~~~vi~l~~~~~~~~~-R~~~--r~~~~~~~~~~~~~~~~~~~~~~~ 138 (176)
..++.+|+|.... .. +....++.+|||++|++++.+ |+.. |++.............+...+...
T Consensus 82 ~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~ 161 (192)
T 1kht_A 82 AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS 161 (192)
T ss_dssp HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4556788886432 10 111125789999999999996 9987 654222211111112233333333
Q ss_pred HhcCCCCcEEEecCC--CHHHHHHHHHHHH
Q 030477 139 KESYPEDIVLALKSD--TIEDITRNIAILT 166 (176)
Q Consensus 139 ~~~~~~~~~i~~~~~--s~~ev~~~i~~~~ 166 (176)
.+.|....++.+++. +++++.+.|..++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 162 YGVLTGATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 333433333444333 4888888777654
No 8
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=128.50 Aligned_cols=163 Identities=17% Similarity=0.258 Sum_probs=95.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHH----HHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDE----LEDIM 75 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~----i~~~~ 75 (176)
|.++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+..... .....+.+... +....
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~ 88 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL 88 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence 34568999999999999999999999999999999998765431 1111111110 01112222222 32222
Q ss_pred -hcCCeEEcCCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHHHh---cC
Q 030477 76 -EQGGNIVDYHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEAKE---SY 142 (176)
Q Consensus 76 -~~~~~vid~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~---~~ 142 (176)
.+.++|+|..... .+.. ..++.+|||++|++++.+|+..|+....+..+..+ ..++..++....+ .|
T Consensus 89 ~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 168 (199)
T 2bwj_A 89 GDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYY 168 (199)
T ss_dssp TSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888842211 0110 13678999999999999999988753233221111 1222233333322 34
Q ss_pred CC-CcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 143 PE-DIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 143 ~~-~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
.. +.++.+++ .+++++.+.|..+++.
T Consensus 169 ~~~~~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 169 ETKTQLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp HHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 32 33344444 4899999998887764
No 9
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.82 E-value=2.3e-19 Score=131.55 Aligned_cols=157 Identities=21% Similarity=0.378 Sum_probs=101.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh----
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM---- 75 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~---- 75 (176)
+.++++|+|+|+|||||||+++.|++++|+++++.+++++.... ....+..... .+...+.+...+...+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 45778999999999999999999999999999999999987532 2222222211 1223344455555433
Q ss_pred hcCCeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC------------c-------
Q 030477 76 EQGGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG------------A------- 120 (176)
Q Consensus 76 ~~~~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~------------~------- 120 (176)
.+.++++|. +++. .++.+|+|++|++++.+|+.+|+... +
T Consensus 106 ~~~~~ildg-----~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 180 (243)
T 3tlx_A 106 CKKGFILDG-----YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDD 180 (243)
T ss_dssp GSSEEEEES-----CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCT
T ss_pred ccCCEEecC-----CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccc
Confidence 246789984 3331 26789999999999999999885210 0
Q ss_pred --------cccchh--HHHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 121 --------KLTNNI--ECEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 121 --------~~~~~~--~~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
+..+.. -..++..+..+.. +.|.. +.++.+++. +++++.+.|..+++
T Consensus 181 ~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 181 VTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 111111 1224444444322 23433 467777765 89999999887764
No 10
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.81 E-value=1.1e-18 Score=124.17 Aligned_cols=157 Identities=24% Similarity=0.330 Sum_probs=94.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHH----hh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDI----ME 76 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~----~~ 76 (176)
.++++|+|+|+|||||||+++.|++++|+++++.|++++... .....+.....+ ....+.....+.+. ..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 97 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA 97 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcccC
Confidence 456799999999999999999999999999999999887632 111111111111 11122233333332 24
Q ss_pred cCCeEEcCCCCC---------CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH---HhcC
Q 030477 77 QGGNIVDYHGCD---------FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA---KESY 142 (176)
Q Consensus 77 ~~~~vid~~~~~---------~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 142 (176)
++++|+|..... .+.. ..++.+|||++|++++.+|+.+|++... ....-..++..+.... .+.|
T Consensus 98 ~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~--~~e~~~~r~~~~~~~~~~~~~~~ 175 (201)
T 2cdn_A 98 ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADD--TDDVILNRMKVYRDETAPLLEYY 175 (201)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTC--SHHHHHHHHHHHHHHTTTHHHHT
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhhHHHHHHh
Confidence 567899843211 0110 1267899999999999999998864321 1111112333333332 1344
Q ss_pred CCCcEEEecC-CCHHHHHHHHHHHH
Q 030477 143 PEDIVLALKS-DTIEDITRNIAILT 166 (176)
Q Consensus 143 ~~~~~i~~~~-~s~~ev~~~i~~~~ 166 (176)
. ..++.+++ .+++++.+.|..++
T Consensus 176 ~-~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 176 R-DQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp T-TTEEEEECCSCHHHHHHHHHHHT
T ss_pred c-CcEEEEeCCCCHHHHHHHHHHHH
Confidence 3 33444554 48998888887654
No 11
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.81 E-value=5.6e-19 Score=127.35 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh----hc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM----EQ 77 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~ 77 (176)
++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+.....+ ....+.+.+.+...+ .+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 83 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV 83 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence 457899999999999999999999999999999999876522 12222221111 122233333333322 35
Q ss_pred CCeEEcCCCCC---------CCCC--CcccEEEEEeCChHHHHHHHhhcC
Q 030477 78 GGNIVDYHGCD---------FFPE--RWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 78 ~~~vid~~~~~---------~~~~--~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
+++|+|..... .+.. ..++.+|||++|++++.+|+..|+
T Consensus 84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 68899942111 0000 135789999999999999999875
No 12
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.81 E-value=1.3e-18 Score=122.67 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=94.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHHh---hcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDIM---EQGG 79 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~~---~~~~ 79 (176)
+++|+|+|+|||||||+++.|++++|+++++.|++++... .....+.....+ ....+.....+...+ .+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 85 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKN 85 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999877653 222222221111 111222333333332 3457
Q ss_pred eEEcCCCCC-----CC----CC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHHHH---hcCC-
Q 030477 80 NIVDYHGCD-----FF----PE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEEAK---ESYP- 143 (176)
Q Consensus 80 ~vid~~~~~-----~~----~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~- 143 (176)
+|+|..... .+ .. ..++.+|||++|++++.+|+..|+....+..+.. -..++..++.... +.|.
T Consensus 86 vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 165 (194)
T 1qf9_A 86 FLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNK 165 (194)
T ss_dssp EEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred EEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 888842111 01 10 1367899999999999999998864222222111 1123333332222 2232
Q ss_pred CCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 144 EDIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 144 ~~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
.+.++.+++ .+++++.+.|..+++.
T Consensus 166 ~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 166 FDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 233333443 5899999998887754
No 13
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.81 E-value=7.6e-19 Score=125.17 Aligned_cols=160 Identities=18% Similarity=0.324 Sum_probs=95.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc--cCCCchhhhccc-----ccch----HHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN--LHDGWDDELECH-----VINE----DLVCDELEDIM 75 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~----~~l~~~i~~~~ 75 (176)
.++++|+|+|+|||||||+++.|++++|+++++.|++++... ....+++....+ .... ..+.+.+...+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhh
Confidence 356789999999999999999999999999999999887542 222222211111 1111 22333444444
Q ss_pred hc--CCeEEcCCCCC---------CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHHHh--
Q 030477 76 EQ--GGNIVDYHGCD---------FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEAKE-- 140 (176)
Q Consensus 76 ~~--~~~vid~~~~~---------~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~-- 140 (176)
.. .++++|..... .+. .++.+|||++|++++.+|+.+|+...+...+..+ ..++..+.....+
T Consensus 93 ~~g~~~~i~dg~~~~~~~~~~~~~~~~--~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~ 170 (203)
T 1ukz_A 93 KANKHKFLIDGFPRKMDQAISFERDIV--ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI 170 (203)
T ss_dssp HTTCCEEEEETCCCSHHHHHHHHHHTC--CCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 33 36788743110 111 2678999999999999999887531112111111 1233333332222
Q ss_pred -cCC-CCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 141 -SYP-EDIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 141 -~~~-~~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
.|. .+.++.+++ .+++++.+.|..+++.
T Consensus 171 ~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 171 EYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 232 245555544 4899999998887753
No 14
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.80 E-value=8.3e-19 Score=126.61 Aligned_cols=159 Identities=17% Similarity=0.279 Sum_probs=96.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh-----h
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM-----E 76 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~-----~ 76 (176)
++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+.....+ ....+.+...+...+ .
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 567899999999999999999999999999999999886421 11122211111 122233334443332 3
Q ss_pred cCCeEEcCCCCC---------CCC--CCcccEEEEEeCChHHHHHHHhhcCCC------------------------Cc-
Q 030477 77 QGGNIVDYHGCD---------FFP--ERWFDRVVVLQTENSVLYDRLTKRGYT------------------------GA- 120 (176)
Q Consensus 77 ~~~~vid~~~~~---------~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~~------------------------~~- 120 (176)
++++|+|..... .+. ...++.+|||++|++++.+|+..|... ++
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l 162 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 162 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence 568899841110 000 013578999999999999999877421 01
Q ss_pred --cccchhH--HHHHHHHHHHHHh---cCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477 121 --KLTNNIE--CEIFQVLLEEAKE---SYPE-DIVLALKSD-TIEDITRNIAILT 166 (176)
Q Consensus 121 --~~~~~~~--~~~~~~~~~~~~~---~~~~-~~~i~~~~~-s~~ev~~~i~~~~ 166 (176)
+..++.+ ..++..+.....+ .|.. +.++.+++. +++++.+.|..++
T Consensus 163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (220)
T 1aky_A 163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217 (220)
T ss_dssp BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHH
Confidence 1111111 1234444443322 4442 456677754 8999988887765
No 15
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.80 E-value=1.4e-18 Score=120.50 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=87.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCC---
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHG--- 86 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~--- 86 (176)
++|+|+|+|||||||+++.|++++|+++++.|.+....... ..++.....+..+..++.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~--------------~~~~~~~~~l~~~~~vi~dr~~~~~ 67 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGN--------------EKLFEHFNKLADEDNVIIDRFVYSN 67 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCH--------------HHHHHHHHHHTTCCSEEEESCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHH--------------HHHHHHHHHHHhCCCeEEeeeecch
Confidence 58999999999999999999999999999988766543200 1111122222222333333100
Q ss_pred ---------CCCCCC----------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-Cc
Q 030477 87 ---------CDFFPE----------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DI 146 (176)
Q Consensus 87 ---------~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 146 (176)
...+.. ..++.+|||++|++++.+|+.+|++ +... ....+.+...+....+.|.. ..
T Consensus 68 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (173)
T 3kb2_A 68 LVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD--EYIE-GKDIDSILELYREVMSNAGLHTY 144 (173)
T ss_dssp HHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC--SCCC-HHHHHHHHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC--cchh-hhHHHHHHHHHHHHHhhcCCCEE
Confidence 000000 1267899999999999999998854 2222 22233455556666666664 23
Q ss_pred EEEecCCCHHHHHHHHHHHHHH
Q 030477 147 VLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 147 ~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
+++.++.+++++.+.|...++.
T Consensus 145 ~id~~~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 145 SWDTGQWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp EEETTTSCHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHhC
Confidence 3333334899888888777654
No 16
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.80 E-value=4.2e-19 Score=124.78 Aligned_cols=159 Identities=16% Similarity=0.288 Sum_probs=92.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhcc-----cccchHHHHHHHHHHhhcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELEC-----HVINEDLVCDELEDIMEQGGN 80 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~~~i~~~~~~~~~ 80 (176)
.++.+|+|+|+|||||||+++.|++++|+++++.|++++... .....+..... .....+.+...+...+.. ++
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~-~~ 80 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE-RV 80 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS-EE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC-CE
Confidence 456789999999999999999999999999999999887642 11112211111 111223344445544433 48
Q ss_pred EEcCCCCCC---------CCCC--cccEEEEEeCChHHHHHHHhhcCC--CCccccchhHHHHHHHHHHHHH---hcCCC
Q 030477 81 IVDYHGCDF---------FPER--WFDRVVVLQTENSVLYDRLTKRGY--TGAKLTNNIECEIFQVLLEEAK---ESYPE 144 (176)
Q Consensus 81 vid~~~~~~---------~~~~--~~~~vi~l~~~~~~~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 144 (176)
|+|...... +... .++.+|||++|++++.+|+..|+. .+.......-..++..++.... +.|..
T Consensus 81 i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~ 160 (186)
T 3cm0_A 81 IFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEA 160 (186)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888422110 1100 257899999999999999988741 1111111111123333333322 23332
Q ss_pred -CcEEEecC-CCHHHHHHHHHHHH
Q 030477 145 -DIVLALKS-DTIEDITRNIAILT 166 (176)
Q Consensus 145 -~~~i~~~~-~s~~ev~~~i~~~~ 166 (176)
+.++.+++ .+++++.+.|..++
T Consensus 161 ~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 161 RGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp TTCEEEEECCSCHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCHHHHHHHHHHHh
Confidence 22444554 48999988887765
No 17
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.80 E-value=1.2e-18 Score=122.96 Aligned_cols=161 Identities=19% Similarity=0.332 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--CCCchhhhccc-----ccch----HHHHHHHHHHh-
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--HDGWDDELECH-----VINE----DLVCDELEDIM- 75 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~----~~l~~~i~~~~- 75 (176)
++.+|+|+|+|||||||+++.|++++|+++++.|++++.... ...++.....+ .... ..+...+....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 467899999999999999999999999999999998765421 11222211111 1111 12222333222
Q ss_pred ---hcCCeEEcCCCCCC-----CC-----CCcccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHHHHh
Q 030477 76 ---EQGGNIVDYHGCDF-----FP-----ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEEAKE 140 (176)
Q Consensus 76 ---~~~~~vid~~~~~~-----~~-----~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~ 140 (176)
.+..+|+|...... +. ...++.+|||++|++++.+|+.+|+....+...+. ...++..+.....+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 24567888432110 00 01357899999999999999988753211221111 12234444444332
Q ss_pred ---cCCC-CcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 141 ---SYPE-DIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 141 ---~~~~-~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
.|.. ..++.+++ .+++++.+.|..+++.
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 3432 23333444 4899999988887753
No 18
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.80 E-value=6.8e-18 Score=121.95 Aligned_cols=162 Identities=17% Similarity=0.321 Sum_probs=97.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHH-----h
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDI-----M 75 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~-----~ 75 (176)
.++++|+|+|+|||||||+++.|++++|+.+++.|++++... .....+.....+ ....+.+...++.. .
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 356789999999999999999999999999999999987632 111222221111 12223333333332 2
Q ss_pred hcCCeEEcCCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcCCCC------------c-------ccc----c-
Q 030477 76 EQGGNIVDYHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTG------------A-------KLT----N- 124 (176)
Q Consensus 76 ~~~~~vid~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~------------~-------~~~----~- 124 (176)
..+++|+|..... .+.. ..++.+|||++|++++.+|+..|.... + ... +
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~ 162 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT 162 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence 3578888842111 0110 125789999999999999998764210 0 010 0
Q ss_pred -hhHHHHHHHHHHHHHh---cCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 125 -NIECEIFQVLLEEAKE---SYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 125 -~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
..-..++..++.+..+ .|.. .++.+++. +++++.+.|..++...
T Consensus 163 ~~~i~~Rl~~~~~~~~~l~~~y~~-~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 163 EEKVKLRLETYYQNIESLLSTYEN-IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCC-CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 1111234455554433 5654 34445544 8999999998887654
No 19
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.80 E-value=5.6e-19 Score=124.07 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=93.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh---hcccccchHHHHHHHHHHhhcCCeEEcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE---LECHVINEDLVCDELEDIMEQGGNIVDY 84 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~vid~ 84 (176)
.++.|+|+|+|||||||+++.|++++|+++++.|++...... ....+. .....+. ..-...+..+.....+++..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~vi~~ 81 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFR-RREREMIEALCKLDNIILAT 81 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHH-HHHHHHHHHHHhcCCcEEec
Confidence 367899999999999999999999999999999998765421 111110 0000010 11111222233334444432
Q ss_pred CC--------CCCCCCCcccEEEEEeCChHHHHHHH--hhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecC
Q 030477 85 HG--------CDFFPERWFDRVVVLQTENSVLYDRL--TKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKS 152 (176)
Q Consensus 85 ~~--------~~~~~~~~~~~vi~l~~~~~~~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~ 152 (176)
.. ...+. ..+.+|||++|++++.+|+ ..+. .++........+.+..++..+.+.|.. +.+|+++.
T Consensus 82 gg~~~~~~~~~~~l~--~~~~vi~L~~~~e~l~~Rl~~~~~~-~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~ 158 (185)
T 3trf_A 82 GGGVVLDEKNRQQIS--ETGVVIYLTASIDTQLKRIGQKGEM-RRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDD 158 (185)
T ss_dssp CTTGGGSHHHHHHHH--HHEEEEEEECCHHHHHHHHHCCTTC-SSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEECTT
T ss_pred CCceecCHHHHHHHH--hCCcEEEEECCHHHHHHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEECCC
Confidence 11 11111 1347999999999999999 4332 233333322234566666666666653 67777776
Q ss_pred CCHHHHHHHHHHHH
Q 030477 153 DTIEDITRNIAILT 166 (176)
Q Consensus 153 ~s~~ev~~~i~~~~ 166 (176)
.+++++.+.|..++
T Consensus 159 ~~~~e~~~~I~~~l 172 (185)
T 3trf_A 159 LNPRQLATQILVDI 172 (185)
T ss_dssp CCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHH
Confidence 68998888887765
No 20
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.79 E-value=8.8e-19 Score=126.04 Aligned_cols=100 Identities=26% Similarity=0.459 Sum_probs=70.2
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhc----cc-ccchHHHHHHHHHHh----hcCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELE----CH-VINEDLVCDELEDIM----EQGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~l~~~i~~~~----~~~~~ 80 (176)
.|+|+|+|||||||+++.|++++|+++++.|++++...... ..+.... .. ....+.+...+...+ .+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGF 81 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCE
Confidence 58999999999999999999999999999999988753221 1221111 11 122233344444332 35678
Q ss_pred EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhc
Q 030477 81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r 115 (176)
++|. ++.. .++.+|+|++|++++.+|+.+|
T Consensus 82 ildg-----~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 82 LLDG-----FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp EEES-----CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred EEeC-----CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 9984 3221 2678999999999999999988
No 21
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.79 E-value=1.5e-18 Score=121.06 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh----hcccccchHHHHHHHHHHhhcCCeEEcC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE----LECHVINEDLVCDELEDIMEQGGNIVDY 84 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~~~~vid~ 84 (176)
++.|+|+|+|||||||+++.|++++|+++++.|++.+.... ...... ....+. ..-...++.+.....+|++.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~--~~~~~~~~~l~~~~~~vi~~ 80 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFR--EQEQKMADFFSSCEKACIAT 80 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHH--HHHHHHHHHHTTCCSEEEEC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHH--HHHHHHHHHHHccCCEEEEC
Confidence 35799999999999999999999999999999998765321 111110 000110 11111222333344555542
Q ss_pred CCC----CCCCCCcccEEEEEeCChHHHHHHHhhcCC-CCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecCCCHHH
Q 030477 85 HGC----DFFPERWFDRVVVLQTENSVLYDRLTKRGY-TGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKSDTIED 157 (176)
Q Consensus 85 ~~~----~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~e 157 (176)
... ..+.. .+.+|||++|++++.+|+..|.+ .++.... .+.+...+..+.+.|. .+.+|+++..++++
T Consensus 81 g~~~~~~~~l~~--~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~---~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~ee 155 (175)
T 1via_A 81 GGGFVNVSNLEK--AGFCIYLKADFEYLKKRLDKDEISKRPLFYD---EIKAKKLYNERLSKYEQKANFILNIENKNIDE 155 (175)
T ss_dssp CTTGGGSTTGGG--GCEEEEEECCHHHHTTCCCGGGTTTSCTTCC---HHHHHHHHHHHHHHHHHHCSEEEECTTCCHHH
T ss_pred CCCEehhhHHhc--CCEEEEEeCCHHHHHHHHhcccCCCCCCccc---HHHHHHHHHHHHHHHHhcCCEEEECCCCCHHH
Confidence 110 00222 46899999999999999987631 2222221 2345556666655554 25677776668998
Q ss_pred HHHHHHHHHH
Q 030477 158 ITRNIAILTD 167 (176)
Q Consensus 158 v~~~i~~~~~ 167 (176)
+.+.|...+.
T Consensus 156 v~~~I~~~l~ 165 (175)
T 1via_A 156 LLSEIKKVIK 165 (175)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 22
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.79 E-value=1e-18 Score=126.26 Aligned_cols=155 Identities=17% Similarity=0.276 Sum_probs=91.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHHh----hc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDIM----EQ 77 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~ 77 (176)
..+.+.|+|+|||||||+|+.|++++|+++++++++++... .....+.....+ ....+.+...+...+ ..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence 45678999999999999999999999999999999998752 222233322222 223444555555433 34
Q ss_pred CCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCC------------c-------------
Q 030477 78 GGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTG------------A------------- 120 (176)
Q Consensus 78 ~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~------------~------------- 120 (176)
.+||+| +||+. .++.||+|++|++++.+|+..|.... +
T Consensus 87 ~g~ILD-----GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L 161 (230)
T 3gmt_A 87 NGYLFD-----GFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPL 161 (230)
T ss_dssp TCEEEE-----SCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCeEec-----CCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCcc
Confidence 689999 66653 36789999999999999999885210 0
Q ss_pred --cccchhH--HHHHHHHHHHHH---hcCCC------------CcEEEecCC-CHHHHHHHHHHHHH
Q 030477 121 --KLTNNIE--CEIFQVLLEEAK---ESYPE------------DIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 121 --~~~~~~~--~~~~~~~~~~~~---~~~~~------------~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
+..++.+ ..++..+.++.. +.|.. +.++.+|+. ++++|.+.|..++.
T Consensus 162 ~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~ 228 (230)
T 3gmt_A 162 VQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV 228 (230)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 1111111 234554544433 34553 577888876 89999988887653
No 23
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.79 E-value=1.7e-18 Score=124.54 Aligned_cols=105 Identities=23% Similarity=0.371 Sum_probs=70.1
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhc----cc-ccchHHHHHHHHHHh----hcCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELE----CH-VINEDLVCDELEDIM----EQGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~l~~~i~~~~----~~~~~ 80 (176)
.|+|+|+|||||||+++.|++++|+++++.|++++...... ..+.... .. ......+...+...+ .+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGF 81 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcE
Confidence 68999999999999999999999999999999988753221 1221111 11 122233344444333 35678
Q ss_pred EEcCCCCCC-----CCC------CcccEEEEEeCChHHHHHHHhhc
Q 030477 81 IVDYHGCDF-----FPE------RWFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 81 vid~~~~~~-----~~~------~~~~~vi~l~~~~~~~~~R~~~r 115 (176)
|+|...... +.. ..++.+|||++|++++.+|+.+|
T Consensus 82 ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 82 LLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 998421110 000 02678999999999999999988
No 24
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.78 E-value=4e-19 Score=130.54 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=95.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh---hhcccccchHHHHHHHHHHhhc-CCeEE-c
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD---ELECHVINEDLVCDELEDIMEQ-GGNIV-D 83 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~-~~~vi-d 83 (176)
+..|+|+|++||||||+++.|++.+|+.+++.|++.+.......... ......+. +.-.+.+..+... .+.|+ +
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr-~~e~~~l~~l~~~~~~~Via~ 126 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFR-EKETEALKKLSLMYHQVVVST 126 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHH-HHHHHHHHHHHHHCSSEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHH-HHHHHHHHHHHhhcCCcEEec
Confidence 67999999999999999999999999999999998876541111111 11111110 1111122223322 23333 2
Q ss_pred C-------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcC-CCCccccc-h------hHHHHHHHHHHHHHhcCCC-CcE
Q 030477 84 Y-------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRG-YTGAKLTN-N------IECEIFQVLLEEAKESYPE-DIV 147 (176)
Q Consensus 84 ~-------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~-~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~-~~~ 147 (176)
. .....+. .+.+|||++|++++.+|+.+++ ..++.... . ...+.+..++.++.+.|.. +.+
T Consensus 127 GgG~v~~~~~~~~l~---~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~v 203 (250)
T 3nwj_A 127 GGGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASAR 203 (250)
T ss_dssp CGGGGGSHHHHHHHT---TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTSSEE
T ss_pred CCCeecCHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEE
Confidence 2 1112222 2679999999999999998643 22333322 0 1135678888888888876 666
Q ss_pred E------------EecCCCHHHHHHHHHHHHHHHH
Q 030477 148 L------------ALKSDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 148 i------------~~~~~s~~ev~~~i~~~~~~~~ 170 (176)
+ +++..+++++.+.|...++.+.
T Consensus 204 i~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 204 VSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp EEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 6 4555689998888887775543
No 25
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.77 E-value=6.6e-18 Score=117.25 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=91.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh---hcccccchHHHHHHHHHHhhcCCeEEcCCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE---LECHVINEDLVCDELEDIMEQGGNIVDYHG 86 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~vid~~~ 86 (176)
++|+|+|+|||||||+++.|++.+|+++++.|++.+... ......- .....+. ......+..+. .+++|++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~vi~~g~ 79 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFR-RRESEALQAVA-TPNRVVATGG 79 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHH-HHHHHHHHHHC-CSSEEEECCT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHH-HHHHHHHHHhh-cCCeEEECCC
Confidence 689999999999999999999999999999999877641 1111110 0000000 00011122222 4566665221
Q ss_pred -CCCCCCC-----cccEEEEEeCChHHHHHHHh--hcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCHHH
Q 030477 87 -CDFFPER-----WFDRVVVLQTENSVLYDRLT--KRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTIED 157 (176)
Q Consensus 87 -~~~~~~~-----~~~~vi~l~~~~~~~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~e 157 (176)
.-..+.. .++.+|||++|++++.+|+. .|...++..........+..++....+.|.. +.+|+++..++++
T Consensus 80 ~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~ 159 (173)
T 1e6c_A 80 GMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAA 159 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHH
T ss_pred cEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHH
Confidence 1111110 14789999999999999998 7732223222111123455555554443432 6777777678998
Q ss_pred HHHHHHHHH
Q 030477 158 ITRNIAILT 166 (176)
Q Consensus 158 v~~~i~~~~ 166 (176)
+.+.|...+
T Consensus 160 ~~~~i~~~l 168 (173)
T 1e6c_A 160 IVCELMQTM 168 (173)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888887665
No 26
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.77 E-value=1.2e-17 Score=121.57 Aligned_cols=163 Identities=18% Similarity=0.273 Sum_probs=97.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh----h
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM----E 76 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~----~ 76 (176)
.++++|+|+|+|||||||+++.|++++|+.+++.+++++..... ...+.....+ ....+.+...+...+ .
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 93 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC 93 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 35679999999999999999999999999999999988764211 1112111111 122233344444433 3
Q ss_pred cCCeEEcCCCCC---------CCCC--CcccEEEEEeCChHHHHHHHhhcCCC------------------------Cc-
Q 030477 77 QGGNIVDYHGCD---------FFPE--RWFDRVVVLQTENSVLYDRLTKRGYT------------------------GA- 120 (176)
Q Consensus 77 ~~~~vid~~~~~---------~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~------------------------~~- 120 (176)
++++|+|..... .+.. ..++.+|||++|++++.+|+..|... .+
T Consensus 94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 173 (233)
T 1ak2_A 94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL 173 (233)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence 357899842110 0000 12678999999999999999877421 01
Q ss_pred --cccchh--HHHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 121 --KLTNNI--ECEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 121 --~~~~~~--~~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
+..+.. -..++..+..... ..|.. +.++.+|+. +++++.+.|..+++.+
T Consensus 174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 111111 1223444333322 23432 345566655 8999999998887654
No 27
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.77 E-value=5.1e-18 Score=117.50 Aligned_cols=151 Identities=13% Similarity=0.214 Sum_probs=86.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh---hhcccccchHHHHHHHHHHhhcCCe-EEc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD---ELECHVINEDLVCDELEDIMEQGGN-IVD 83 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~-vid 83 (176)
.+.+|+|+|+|||||||+++.|++++|+++++.|++.+.... ....+ ......+. +.-...+..+.....+ |+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~Vi~ 83 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFR-MFEKNLIDELKTLKTPHVIS 83 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHH-HHHHHHHHHHHTCSSCCEEE
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHH-HHHHHHHHHHHhcCCCEEEE
Confidence 568999999999999999999999999999999998876431 11111 00000010 1111122333333444 553
Q ss_pred CC-CC---CCCCCCcccEEEEEeCChHHHHHHHhhcC-CCCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecCCCHH
Q 030477 84 YH-GC---DFFPERWFDRVVVLQTENSVLYDRLTKRG-YTGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKSDTIE 156 (176)
Q Consensus 84 ~~-~~---~~~~~~~~~~vi~l~~~~~~~~~R~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~ 156 (176)
.. .. ..+. .++.+|||++|++++.+|+..|. ..++... + .+.+...+..+.+.|. .+.+++++. +++
T Consensus 84 ~g~g~~~~~~l~--~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~-~--~~~~~~~~~~r~~~~~~~a~~~Id~~~-~~e 157 (168)
T 1zuh_A 84 TGGGIVMHENLK--GLGTTFYLKMDFETLIKRLNQKEREKRPLLN-N--LTQAKELFEKRQALYEKNASFIIDARG-GLN 157 (168)
T ss_dssp CCGGGGGCGGGT--TSEEEEEEECCHHHHHHHHCC--------CC-T--THHHHHHHHHHHHHHHHTCSEEEEGGG-CHH
T ss_pred CCCCEechhHHh--cCCEEEEEECCHHHHHHHHhccCCCCCCCcc-C--HHHHHHHHHHHHHHHHHHCCEEEECCC-CHH
Confidence 21 00 0022 25789999999999999998772 1112222 1 2234444444444443 256677666 898
Q ss_pred HHHHHHHHHH
Q 030477 157 DITRNIAILT 166 (176)
Q Consensus 157 ev~~~i~~~~ 166 (176)
++.+.|...+
T Consensus 158 ~~~~~I~~~l 167 (168)
T 1zuh_A 158 NSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 8888776543
No 28
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.77 E-value=1.7e-17 Score=120.06 Aligned_cols=160 Identities=20% Similarity=0.194 Sum_probs=89.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-----cCCCchh-------------hhc---------
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-----LHDGWDD-------------ELE--------- 58 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-----~~~~~~~-------------~~~--------- 58 (176)
|.++.+|+|+|++||||||+++.|++.+|+++++.|++.+... ....+.. .+.
T Consensus 2 m~~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (227)
T 1cke_A 2 TAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVI 81 (227)
T ss_dssp -CCSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEE
Confidence 3445789999999999999999999999999999999987421 0111100 000
Q ss_pred -------ccccch------------HHHHHHHHHH----hhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHh
Q 030477 59 -------CHVINE------------DLVCDELEDI----MEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLT 113 (176)
Q Consensus 59 -------~~~~~~------------~~l~~~i~~~----~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~ 113 (176)
..+... ..+.+.+... ..++++++|..... .++ .++.+|||++|++++.+|..
T Consensus 82 l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~--~~d~~i~l~~~~e~~~~R~~ 159 (227)
T 1cke_A 82 LEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFP--DAPVKIFLDASSEERAHRRM 159 (227)
T ss_dssp ETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCT--TCSEEEEEECCHHHHHHHHH
T ss_pred ECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEec--CCCEEEEEeCCHHHHHHHHH
Confidence 000111 1122222221 23467888865432 333 36899999999999999943
Q ss_pred ----hcCCCCccccchhHHHHHH----HHHHHHHhcCCCC--cEEEecCCCHHHHHHHHHHHHHHH
Q 030477 114 ----KRGYTGAKLTNNIECEIFQ----VLLEEAKESYPED--IVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 114 ----~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
.|+... ..+....+... ++.....+.+... .+++.+..+++++.+.|..++...
T Consensus 160 ~~l~~rg~~~--~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 160 LQLQVKGFSV--NFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp HHHHHHTCCC--CHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccC--CHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 444311 11111111111 1111223444432 555555458999999988887543
No 29
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.77 E-value=7e-18 Score=122.09 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=72.6
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh-h--cCCe
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM-E--QGGN 80 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~-~--~~~~ 80 (176)
++|+|+|+|||||||+++.|++++|+++++.|++++.+... ...+.....+ +...+.+...+...+ . +.++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 37999999999999999999999999999999998876321 1222221111 112234444455443 3 5678
Q ss_pred EEcCCCCC-----CCC------CCcccEEEEEeCChHHHHHHHhhcC
Q 030477 81 IVDYHGCD-----FFP------ERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 81 vid~~~~~-----~~~------~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
|+|..... .+. ...++.+|||++|++++.+|+..|+
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 88842111 010 0136789999999999999999886
No 30
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.77 E-value=1.5e-18 Score=121.81 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=88.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh---cccccchHHHHHHHHHHhhcCCeEEcCC-
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL---ECHVINEDLVCDELEDIMEQGGNIVDYH- 85 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~vid~~- 85 (176)
++|+|+|+|||||||+|+.|++++|+++++.|++.+.... .....-+ ....+. +.....++.+.....+|+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~vi~~g~ 80 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFR-RIEEDVVRAALADHDGVLSLGG 80 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHH-HHHHHHHHHHHHHCCSEEECCT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHH-HHHHHHHHHHHhcCCeEEecCC
Confidence 5799999999999999999999999999999998775421 1111100 000110 111122233333334444311
Q ss_pred -------CCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecCCCHH
Q 030477 86 -------GCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKSDTIE 156 (176)
Q Consensus 86 -------~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~ 156 (176)
....+. .+.+|||++|++++.+|+..|+.. +........+.+..++..+.+.|. .+.+|+++..+++
T Consensus 81 ~~v~~~~~~~~l~---~~~vV~L~~~~e~~~~Rl~~r~~r-~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~e 156 (184)
T 2iyv_A 81 GAVTSPGVRAALA---GHTVVYLEISAAEGVRRTGGNTVR-PLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPG 156 (184)
T ss_dssp TGGGSHHHHHHHT---TSCEEEEECCHHHHHHHTTCCCCC-SSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHH
T ss_pred cEEcCHHHHHHHc---CCeEEEEeCCHHHHHHHHhCCCCC-CCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHH
Confidence 111111 457999999999999999877532 222211122345555555555453 2566666656898
Q ss_pred HHHHHHHHHH
Q 030477 157 DITRNIAILT 166 (176)
Q Consensus 157 ev~~~i~~~~ 166 (176)
++.+.|...+
T Consensus 157 e~~~~I~~~l 166 (184)
T 2iyv_A 157 AVVRHILSRL 166 (184)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHH
Confidence 8877776544
No 31
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.77 E-value=1.1e-17 Score=115.92 Aligned_cols=154 Identities=20% Similarity=0.248 Sum_probs=88.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-----Cchhhhcccc--cchHHHHHHHHHHh---hcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-----GWDDELECHV--INEDLVCDELEDIM---EQGG 79 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~~i~~~~---~~~~ 79 (176)
++|+|+|+|||||||+++.| +++|+++++.+++++...... ........+. +....+.+.+...+ .+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDL 80 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCe
Confidence 68999999999999999999 999999999999887653211 1111010000 01223333344333 3356
Q ss_pred eEEcCCCCCC-----CCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH----HHhcCC-CCcE
Q 030477 80 NIVDYHGCDF-----FPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE----AKESYP-EDIV 147 (176)
Q Consensus 80 ~vid~~~~~~-----~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~ 147 (176)
+|+|.. ... +.. ..++.+|||++|++++.+|+..|++...... . .+....+... ..+.+. .+.+
T Consensus 81 vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~--~-~~~~~r~~~~~~~~~~~~~~~ad~v 156 (179)
T 3lw7_A 81 VVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKE--I-SELIRRDREELKLGIGEVIAMADYI 156 (179)
T ss_dssp EEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCC--H-HHHHHHHHHHHHHTHHHHHHTCSEE
T ss_pred EEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcch--H-HHHHHHHHhhhccChHhHHHhCCEE
Confidence 788853 100 000 0245799999999999999998875321111 1 1111111110 111111 1455
Q ss_pred EEecCCCHHHHHHHHHHHHHHH
Q 030477 148 LALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 148 i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
++. +.+++++.+.+..+++.+
T Consensus 157 Id~-~~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 157 ITN-DSNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp EEC-CSCHHHHHHHHHHHHHHH
T ss_pred EEC-CCCHHHHHHHHHHHHHHH
Confidence 553 348999999998888654
No 32
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.77 E-value=1.6e-18 Score=123.45 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccc---hHHHHHHHHHHh-hcCCeEEc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVIN---EDLVCDELEDIM-EQGGNIVD 83 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~-~~~~~vid 83 (176)
++++|+|+|++||||||+++.|++.+|+.+++.|++....... . .... ..+. ....+..+...+ .+.++|+|
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~-~--~~~g-~~~~~~~~~~~~~~l~~~~~~~~~vivd 92 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIR-K--MSEG-IPLTDDDRWPWLAAIGERLASREPVVVS 92 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHH-H--HHHT-CCCCHHHHHHHHHHHHHHHTSSSCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHH-H--HhcC-CCCCchhhHHHHHHHHHHHhcCCCEEEE
Confidence 4679999999999999999999999999999988874321100 0 0000 1111 112233344333 34567888
Q ss_pred CCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCC
Q 030477 84 YHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDT 154 (176)
Q Consensus 84 ~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s 154 (176)
..... .+.. ..+..+|||++|++++.+|+.+|+..... .+.+...+....+.+.. ..+|+++ .+
T Consensus 93 ~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Id~~-~~ 165 (202)
T 3t61_A 93 CSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP------SSLLQTQLETLEDPRGEVRTVAVDVA-QP 165 (202)
T ss_dssp CCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC------HHHHHHHHHHCCCCTTSTTEEEEESS-SC
T ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC------HHHHHHHHHhcCCCCCCCCeEEEeCC-CC
Confidence 54211 0100 11358999999999999999988632111 23444455544444544 3344444 58
Q ss_pred HHHHHHHHHHHHHHH
Q 030477 155 IEDITRNIAILTDWV 169 (176)
Q Consensus 155 ~~ev~~~i~~~~~~~ 169 (176)
++++.+.|..++...
T Consensus 166 ~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 166 LAEIVREALAGLARL 180 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998888887543
No 33
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.76 E-value=1.5e-17 Score=120.53 Aligned_cols=111 Identities=23% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh---h
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM---E 76 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~---~ 76 (176)
+.++++|+|+|+|||||||+++.|++++|+.+++.|++++.... ....+.....+ ....+.....+...+ .
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 83 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLT 83 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCT
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999998876432 11112111111 112222223332222 2
Q ss_pred cCCeEEcCCCCCC-----CC-CCcccEEEEEeCChHHHHHHHhhcC
Q 030477 77 QGGNIVDYHGCDF-----FP-ERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 77 ~~~~vid~~~~~~-----~~-~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
+.++|+|...... +. ...++.+|||++|++++.+|+..|.
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 5678888532110 00 0236789999999999999998773
No 34
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.76 E-value=1.1e-18 Score=121.18 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=85.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh---cccccchHHHHHHHHHHhhcCCeEEcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL---ECHVINEDLVCDELEDIMEQGGNIVDY 84 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~vid~ 84 (176)
.+.+|+|+|++||||||+++.|++.+|+++++.|++.+... ......-+ ....+... -...+..+....++++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~-~~~i~~i~~~~g~~~~~~~-~~~~l~~l~~~~~~v~~~ 80 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDR-EEKVINELTEKQGIVLAT 80 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHH-HHHHHHHHHTSSSEEEEC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh-CcCHHHHHHHHhHHHHHHH-HHHHHHHHHhCCCeEEEC
Confidence 35789999999999999999999999999999988876432 11111100 00001000 012233333345566542
Q ss_pred CCCCCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHH
Q 030477 85 HGCDFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIE 156 (176)
Q Consensus 85 ~~~~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ 156 (176)
.....+.. ...+.++||+++++++.+|+..|+.......++...+.+..++..+.+.|.. +.+|+++..+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id~~~~~~~ 160 (173)
T 1kag_A 81 GGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK 160 (173)
T ss_dssp CTTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-----CHH
T ss_pred CCeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEECCCCCHH
Confidence 11111111 1246899999999999999987743211111111123455555555555543 455555556899
Q ss_pred HHHHHHHHHH
Q 030477 157 DITRNIAILT 166 (176)
Q Consensus 157 ev~~~i~~~~ 166 (176)
++.+.+..++
T Consensus 161 ~~~~~i~~~l 170 (173)
T 1kag_A 161 VVANQIIHML 170 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 35
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.76 E-value=2.4e-17 Score=118.44 Aligned_cols=106 Identities=19% Similarity=0.327 Sum_probs=71.1
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhcc-----cccchHHHHHHHHHHhh----cCCe
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELEC-----HVINEDLVCDELEDIME----QGGN 80 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~~~i~~~~~----~~~~ 80 (176)
.|+|+|+|||||||+++.|++++|+++++.|++++... .....+..... .....+.+...+...+. ..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF 81 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence 58999999999999999999999999999999988741 12222222111 12233444555554332 2578
Q ss_pred EEcCCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcC
Q 030477 81 IVDYHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 81 vid~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
|+|..... .+.. ..++.+|||++|++++.+|+..|+
T Consensus 82 i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 82 LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp EEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred EEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 88842110 0100 135789999999999999998775
No 36
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.76 E-value=2.4e-17 Score=117.52 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--------CCCchhhhccccc-----------ch----
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--------HDGWDDELECHVI-----------NE---- 64 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~---- 64 (176)
+.++|.|.|++||||||+++.||+++|++++| +++++.... +...++....+.+ ..
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 45799999999999999999999999999999 877654321 1111211110110 00
Q ss_pred HHHHHHHHHHh--hcCCeEEcCCCCC-CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc
Q 030477 65 DLVCDELEDIM--EQGGNIVDYHGCD-FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES 141 (176)
Q Consensus 65 ~~l~~~i~~~~--~~~~~vid~~~~~-~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (176)
....+.++.+. ..+++|++..... .++.....+.|||++|++++.+|+.++.. ...+... +.+......+.+.
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~---~~~~~~~-~~i~~~d~~R~~~ 159 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCAEEILSDNPNMISAFILGDKDTKTKRVMEREG---VDEKTAL-NMMKKMDKMRKVY 159 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTHHHHTTTCTTEEEEEEEECHHHHHHHHHHHHT---CCHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCcchhcCCCCCeEEEEEECCHHHHHHHHHHHhC---CCHHHHH-HHHHHHHHHHHHH
Confidence 22344444555 5677888754322 34433235799999999999999986521 1111111 1222222222221
Q ss_pred CC------------CCcEEEecCCCHHHHHHHHHHHHH
Q 030477 142 YP------------EDIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 142 ~~------------~~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
|. .+.+|+++..+++++.+.|...++
T Consensus 160 y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 160 HNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp HHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence 11 257888887899988888777664
No 37
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.74 E-value=6.7e-17 Score=112.50 Aligned_cols=150 Identities=13% Similarity=0.183 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchh-hhcccccchHHHHHHHHHHh-hcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDD-ELECHVINEDLVCDELEDIM-EQGG 79 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~l~~~i~~~~-~~~~ 79 (176)
+++.+|+|+|++||||||+++.|++.+|..+++.|++.+.. .....+.. .....+ ..+...+.... .+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL---QALNDAAFAMQRTNKV 82 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH---HHHHHHHHHHHHHCSE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH---HHHHHHHHHHHhcCCc
Confidence 35679999999999999999999999999999988874321 11111111 000000 11222222233 2456
Q ss_pred eEEcCCCC-----CCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc-CCC--CcEEEe
Q 030477 80 NIVDYHGC-----DFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES-YPE--DIVLAL 150 (176)
Q Consensus 80 ~vid~~~~-----~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~i~~ 150 (176)
+|+|.... ..+....++ .+|||++|++++.+|+..|+... .. ...+...+....+. |.. +.+|++
T Consensus 83 ~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~Id~ 156 (175)
T 1knq_A 83 SLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF---FK---TQMLVTQFETLQEPGADETDVLVVDI 156 (175)
T ss_dssp EEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCC---CC---HHHHHHHHHHCCCCCTTCTTEEEEEC
T ss_pred EEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCC---Cc---hHHHHHHHHhhhCcccCCCCeEEEeC
Confidence 78875321 111111234 69999999999999999886321 11 11233333322333 444 344444
Q ss_pred cCCCHHHHHHHHHHHH
Q 030477 151 KSDTIEDITRNIAILT 166 (176)
Q Consensus 151 ~~~s~~ev~~~i~~~~ 166 (176)
+ .+++++.+.|...+
T Consensus 157 ~-~~~~~~~~~i~~~l 171 (175)
T 1knq_A 157 D-QPLEGVVASTIEVI 171 (175)
T ss_dssp S-SCHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHH
Confidence 3 48888888777665
No 38
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.74 E-value=6.9e-18 Score=116.68 Aligned_cols=150 Identities=18% Similarity=0.254 Sum_probs=88.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh---cccccchHHHHHHHHHHhhcCCeEEcCC-
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL---ECHVINEDLVCDELEDIMEQGGNIVDYH- 85 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~vid~~- 85 (176)
+.|+|+|+|||||||+++.|++++|+++++.|++.+... .....+-. ....+. ......+..+...+.+|++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~Vi~~g~ 78 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE-GLSIPQIFEKKGEAYFR-KLEFEVLKDLSEKENVVISTGG 78 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHSCHHHHH-HHHHHHHHHHTTSSSEEEECCH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc-CCCHHHHHHHhChHHHH-HHHHHHHHHHhccCCeEEECCC
Confidence 369999999999999999999999999999999876542 11111100 000010 001112222233566777521
Q ss_pred C-------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecCCCHHH
Q 030477 86 G-------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKSDTIED 157 (176)
Q Consensus 86 ~-------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~e 157 (176)
. ...+. .++.+|||++|++++.+|+.+|.. ++...+ . .+.+...+..+.+.|. .+.++ .+..++++
T Consensus 79 ~~~~~~~~~~~l~--~~~~~i~l~~~~e~~~~R~~~r~~-r~~~~~-~-~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~ 152 (168)
T 2pt5_A 79 GLGANEEALNFMK--SRGTTVFIDIPFEVFLERCKDSKE-RPLLKR-P-LDEIKNLFEERRKIYSKADIKV-KGEKPPEE 152 (168)
T ss_dssp HHHTCHHHHHHHH--TTSEEEEEECCHHHHHHHCBCTTC-CBGGGS-C-GGGTHHHHHHHHHHHTTSSEEE-ECSSCHHH
T ss_pred CEeCCHHHHHHHH--cCCEEEEEECCHHHHHHHHhCCCC-CCCCcc-h-HHHHHHHHHHHHHHHHhCCEEE-CCCCCHHH
Confidence 1 11121 157899999999999999987642 222211 1 1123333333344444 35555 54468999
Q ss_pred HHHHHHHHHH
Q 030477 158 ITRNIAILTD 167 (176)
Q Consensus 158 v~~~i~~~~~ 167 (176)
+.+.|..++.
T Consensus 153 ~~~~i~~~l~ 162 (168)
T 2pt5_A 153 VVKEILLSLE 162 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887764
No 39
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.74 E-value=1.2e-16 Score=114.96 Aligned_cols=151 Identities=18% Similarity=0.276 Sum_probs=89.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-------ccCCC-----------c-------------hhh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-------NLHDG-----------W-------------DDE 56 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-------~~~~~-----------~-------------~~~ 56 (176)
++.+|+|+|++||||||+++.|++.+|+++++.|++.+.. ..... + +..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~ 81 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED 81 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence 4578999999999999999999999999999999987642 11000 0 000
Q ss_pred hcccccchH----------------HHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHh----h
Q 030477 57 LECHVINED----------------LVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLT----K 114 (176)
Q Consensus 57 ~~~~~~~~~----------------~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~----~ 114 (176)
....+.... .+......+..++++|++..... .++. .+.+|||++|++++.+|+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~~~~--~~~vi~l~a~~e~~~~R~~~~~~~ 159 (219)
T 2h92_A 82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPD--ADLKVYMIASVEERAERRYKDNQL 159 (219)
T ss_dssp CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCCCTT--CSEEEEEECCHHHHHHHHHHHHHH
T ss_pred chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCccceecCC--CCEEEEEECCHHHHHHHHHHHHHh
Confidence 000000000 01111112234567888865433 4443 5789999999999999975 3
Q ss_pred cCCCCccccchhHHHHHHHHHHHHH---------hcCCC-C-cEEEecCCCHHHHHHHHHHHHH
Q 030477 115 RGYTGAKLTNNIECEIFQVLLEEAK---------ESYPE-D-IVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~-~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
|+.. ...+ .....+..+. +.|.. + .+|++++.+++++.+.|..+++
T Consensus 160 r~~~--~~~e-----~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 160 RGIE--SNFE-----DLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp TTCC--CCHH-----HHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCcc--cCHH-----HHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 4431 1111 1122222221 44544 3 5666655589998888877664
No 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.74 E-value=1.4e-16 Score=113.37 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=88.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchhhhcccccchHHHHHHHHHHh-hcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDDELECHVINEDLVCDELEDIM-EQGGN 80 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~ 80 (176)
.++.+|+|+|++||||||+++.|+..+|..+++.+++.... .....+.... .......+...+.... .+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~g~~v 104 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDED--RWPWLRSLAEWMDARADAGVST 104 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHH--HHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcc--cccHHHHHHHHHHHHHhcCCCE
Confidence 35789999999999999999999999999999988764211 0100010000 0000011112222222 34567
Q ss_pred EEcCCCCC-----CCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecC-C
Q 030477 81 IVDYHGCD-----FFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKS-D 153 (176)
Q Consensus 81 vid~~~~~-----~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 153 (176)
|+|..... .+... ....+|||++|++++.+|+.+|+..... .+.+...+....+.|.....+.+++ .
T Consensus 105 iid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~------~~~l~~~~~~~~~~~~~~~~~~Id~~~ 178 (200)
T 4eun_A 105 IITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMP------ASLLQSQLATLEALEPDESGIVLDLRQ 178 (200)
T ss_dssp EEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSC------GGGHHHHHHHCCCCCTTSCEEEEETTS
T ss_pred EEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCC------HHHHHHHHHHhCCCCCCCCeEEEECCC
Confidence 77753210 11110 1246899999999999999888643211 1234555555556666433333433 3
Q ss_pred CHHHHHHHHHHHHH
Q 030477 154 TIEDITRNIAILTD 167 (176)
Q Consensus 154 s~~ev~~~i~~~~~ 167 (176)
+++++.+.|..++.
T Consensus 179 ~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 179 PPEQLIERALTWLD 192 (200)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 78888877776653
No 41
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.74 E-value=6.3e-17 Score=113.96 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=86.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcc----cCCCchhhhcccccc-hHHHH----HHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKN----LHDGWDDELECHVIN-EDLVC----DELEDIM 75 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~l~----~~i~~~~ 75 (176)
++|+|+|+|||||||+++.|+++++ +.+++.+++++... ..... ..+...... ...++ +.+...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l 80 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR-DEMRKLSVEKQKKLQIDAAKGIAEEA 80 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH-HHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch-hhhhcCCHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999997 88898888775321 11111 111111111 01122 2233333
Q ss_pred ---hcCCeEEcCCCCCC--------CCC-----CcccEEEEEeCChHHHHHH-Hhh--cCCCCcccc-chh-HHHHHHHH
Q 030477 76 ---EQGGNIVDYHGCDF--------FPE-----RWFDRVVVLQTENSVLYDR-LTK--RGYTGAKLT-NNI-ECEIFQVL 134 (176)
Q Consensus 76 ---~~~~~vid~~~~~~--------~~~-----~~~~~vi~l~~~~~~~~~R-~~~--r~~~~~~~~-~~~-~~~~~~~~ 134 (176)
.+..+|+|...... ++. ..++.+|||++|++++.+| +.. |++. +... +.. ..+.+...
T Consensus 81 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~-~~~~~~~~~~~~~~~~~ 159 (194)
T 1nks_A 81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRN-DYSDESVILETINFARY 159 (194)
T ss_dssp HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCC-CCCSHHHHHHHHHHHHH
T ss_pred hccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCC-CccCHHHHHHHHHHHHH
Confidence 33457778531100 000 1257899999999998865 766 6541 1111 111 12234444
Q ss_pred HHHHHhcCCCCcEEEe-cCC-CHHHHHHHHHHHH
Q 030477 135 LEEAKESYPEDIVLAL-KSD-TIEDITRNIAILT 166 (176)
Q Consensus 135 ~~~~~~~~~~~~~i~~-~~~-s~~ev~~~i~~~~ 166 (176)
+....+.|....++.+ ++. +++++.+.|..++
T Consensus 160 ~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 160 AATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 4444444423334445 543 7888888777654
No 42
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.73 E-value=1.1e-16 Score=117.85 Aligned_cols=159 Identities=21% Similarity=0.239 Sum_probs=90.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc---------cCCC--chh---h----h------ccc--
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN---------LHDG--WDD---E----L------ECH-- 60 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~---------~~~~--~~~---~----~------~~~-- 60 (176)
.++.+|.|+||+||||||+++.|++++|+.+++.+.+.+... .... ... . + ...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 456799999999999999999999999999999999873321 1000 000 0 0 000
Q ss_pred --------ccch----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhh
Q 030477 61 --------VINE----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 61 --------~~~~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
+... +.+.+..+.+..++++|++..... .++. .++.|||++|++++.+|...
T Consensus 105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~--~~~~ifl~A~~e~r~~R~~~ 182 (252)
T 4e22_A 105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPD--APVKIFLDASSQERAHRRML 182 (252)
T ss_dssp TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTT--CSEEEEEECCHHHHHHHHHH
T ss_pred CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCC--CCEEEEEECCHHHHHHHHHH
Confidence 0000 011122222334578888865544 3444 57899999999999998764
Q ss_pred c----CCCCccccchhHHHHHHHHH----HHHHhcCCC--CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 115 R----GYTGAKLTNNIECEIFQVLL----EEAKESYPE--DIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 115 r----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
. +. ....+....+...+.. ....+.+.. ..+|+++..+++++.+.|..+++..
T Consensus 183 ~l~~~~~--~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 183 QLQERGF--NVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp HHHHHTC--CCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCC--CCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence 2 21 1111111111111111 111122222 2666776669999999888877543
No 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.72 E-value=1.8e-18 Score=122.05 Aligned_cols=113 Identities=21% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccccc--chHHHHHHHHHHh-hcCCe
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHVI--NEDLVCDELEDIM-EQGGN 80 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~i~~~~-~~~~~ 80 (176)
+|+++++|+|+|+|||||||+++.|++++|+++++.|.+...... ....+......+. ....+.+.+...+ .+.++
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 80 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL 80 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence 356778999999999999999999999999999998877543211 1100111000000 0012223333334 45678
Q ss_pred EEcCCCCC------C--CCC--CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 81 IVDYHGCD------F--FPE--RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 81 vid~~~~~------~--~~~--~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
|+|..... + +.. ..++.+|||++|++++.+|+.+|+.
T Consensus 81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 88854410 1 111 1245799999999999999988764
No 44
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.71 E-value=1.2e-16 Score=113.58 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=82.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhH----HHhhcccCCCchhhhcccccchHHHHHHHH---HHhhcCCeEE
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGE----LVREKNLHDGWDDELECHVINEDLVCDELE---DIMEQGGNIV 82 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~~~~~vi 82 (176)
++|+|+|++||||||+++.|+++++..++.-.. +.+. ..... .... +......+...++ ..+..+.+|+
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~r~~~~~~~~~~~~vi~ 76 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQ--YYKDL-KKTV-FKMQIYMLTARSKQLKQAKNLENIIF 76 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHH--HTTCH-HHHH-HHHHHHHHHHHHHHHC------CEEE
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHH--HHhCc-cccc-hhHHHHHHHHHHHHHHHhhccCCEEE
Confidence 479999999999999999999999988764210 0000 00000 0000 0000001111112 1223345666
Q ss_pred cCCCC-------------------------------CCC-----CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchh
Q 030477 83 DYHGC-------------------------------DFF-----PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI 126 (176)
Q Consensus 83 d~~~~-------------------------------~~~-----~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~ 126 (176)
|.... ..+ ....++.+|||++|++++.+|+.+|+++........
T Consensus 77 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~ 156 (205)
T 2jaq_A 77 DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEE 156 (205)
T ss_dssp ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHH
T ss_pred EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHH
Confidence 64321 111 012478899999999999999998864211111112
Q ss_pred HHHHHHHHHHHHHhcCC-CCcEEEecCC-CHHHHHHHHHHHHHH
Q 030477 127 ECEIFQVLLEEAKESYP-EDIVLALKSD-TIEDITRNIAILTDW 168 (176)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~-s~~ev~~~i~~~~~~ 168 (176)
..+.+...+....+.|. ....+.+++. +++++.+.|..+++.
T Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~ 200 (205)
T 2jaq_A 157 YWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS 200 (205)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 22345555555556664 3233444433 899888888877754
No 45
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.71 E-value=1.5e-16 Score=115.39 Aligned_cols=158 Identities=15% Similarity=0.195 Sum_probs=94.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-------c-CCCc---hhhhc-------------cc-
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-------L-HDGW---DDELE-------------CH- 60 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-------~-~~~~---~~~~~-------------~~- 60 (176)
|+++.+|+|+||+||||||+++.|++++|+.+++.+.+.+... . .... ..... ..
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF 85 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence 4567899999999999999999999999999999999865532 0 0000 00000 00
Q ss_pred ---------ccch----------------HHHHHHHHHHhhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHH
Q 030477 61 ---------VINE----------------DLVCDELEDIMEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRL 112 (176)
Q Consensus 61 ---------~~~~----------------~~l~~~i~~~~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~ 112 (176)
+..+ +.+.+..+.+... +++|++..... .+|. .++-|||++|++++.+|.
T Consensus 86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pd--a~lkifl~A~~e~Ra~Rr 163 (233)
T 3r20_A 86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPD--ADVKIFLTASAEERARRR 163 (233)
T ss_dssp ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTT--CSEEEEEECCHHHHHHHH
T ss_pred ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCC--CCEEEEEECCHHHHHHHH
Confidence 0001 2244444445555 78999876443 5565 568999999999999988
Q ss_pred hhc----CCCCccccchhHHHHHHHHHHHHH---hcCCC-C--cEEEecCCCHHHHHHHHHHHHH
Q 030477 113 TKR----GYTGAKLTNNIECEIFQVLLEEAK---ESYPE-D--IVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 113 ~~r----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~--~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
.++ +.. ...+....+....-..... .++.. + .+|+++..+++++.+.|..+++
T Consensus 164 ~~~l~~~~~~--~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~ 226 (233)
T 3r20_A 164 NAQNVANGLP--DDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVT 226 (233)
T ss_dssp HHHHHHTTCC--CCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC-
T ss_pred HHHHHhccCC--CCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHH
Confidence 653 221 1111221111111111111 12222 2 7788887899999888887764
No 46
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.71 E-value=2.4e-16 Score=112.42 Aligned_cols=157 Identities=16% Similarity=0.144 Sum_probs=92.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CC----Cchhhhccccc------ch----------
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HD----GWDDELECHVI------NE---------- 64 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~------~~---------- 64 (176)
...+.-|.|+|.+||||||+++.|++ +|++++|+|.+.+.... .. .....+...++ +.
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 34678899999999999999999987 99999999998776421 11 11111111111 11
Q ss_pred HH------------HHHHHHHHhh--c-CCeEEcCCCCCCCC-C---CcccEEEEEeCChHHHHHHHhhcCCCCccccch
Q 030477 65 DL------------VCDELEDIME--Q-GGNIVDYHGCDFFP-E---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN 125 (176)
Q Consensus 65 ~~------------l~~~i~~~~~--~-~~~vid~~~~~~~~-~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~ 125 (176)
.. +.+.+...+. + .-+++|... ++. . ..+|.+|+++||++++.+|+.+|+. ...+.
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pL--L~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg---~s~ee 159 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPL--LVESRNWKARCDRVLVVDCPVDTQIARVMQRNG---FTREQ 159 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTT--CTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHC---CCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEec--ccccCCccccCCeEEEEECCHHHHHHHHHhcCC---CCHHH
Confidence 11 1112222221 2 235667543 333 1 2478999999999999999998852 11111
Q ss_pred hHHHHHHHHHHHHHhcCCC-CcEEEecC-CCHHHHHHHHHHHHHHHHh
Q 030477 126 IECEIFQVLLEEAKESYPE-DIVLALKS-DTIEDITRNIAILTDWVRN 171 (176)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~-~s~~ev~~~i~~~~~~~~~ 171 (176)
... ++...... .+.+.. +.+|+ |+ ++.+++.+.+..+++.+..
T Consensus 160 a~~-ri~~Q~~~-eek~~~AD~VId-N~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 160 VEA-IIARQATR-EARLAAADDVIV-NDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HHH-HHHHSCCH-HHHHHTCSEEEE-CSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHcCCh-HHHHHhCCEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence 111 11111111 111222 34554 45 6899999999999877654
No 47
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.70 E-value=3.3e-16 Score=111.71 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=85.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC---------chhh------------hcccccch-H--
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG---------WDDE------------LECHVINE-D-- 65 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~~-~-- 65 (176)
.+|.|+|++||||||+++.|++ +|+++++.|++.+....... ++.. ....++.. +
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5799999999999999999988 99999999998765321000 0000 00001110 0
Q ss_pred ---------HHHHHHHHHh---hcCCeEEcCCCCCCC-CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477 66 ---------LVCDELEDIM---EQGGNIVDYHGCDFF-PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ 132 (176)
Q Consensus 66 ---------~l~~~i~~~~---~~~~~vid~~~~~~~-~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 132 (176)
.+...+...+ .++.+|++.+...-. -...++.+|||++|++++.+|+..|+. ...+... .++.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~---~~~e~~~-~r~~ 157 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDN---NNFEQIQ-RIMN 157 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC--------CHHHHH-HHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HHHH
Confidence 0111111112 234567775432111 012367899999999999999988741 1111111 1111
Q ss_pred HHHHHHHhcCC-CCcEEEecCCCHH----HHHHHHHHHHHHHHhh
Q 030477 133 VLLEEAKESYP-EDIVLALKSDTIE----DITRNIAILTDWVRNW 172 (176)
Q Consensus 133 ~~~~~~~~~~~-~~~~i~~~~~s~~----ev~~~i~~~~~~~~~~ 172 (176)
... ...+.|. .+.+|+.++ +++ ++.+.+..+++.+..+
T Consensus 158 ~q~-~~~~~~~~ad~vIdn~~-~~~~~~~~~~~~i~~~~~~~~~~ 200 (206)
T 1jjv_A 158 SQV-SQQERLKWADDVINNDA-ELAQNLPHLQQKVLELHQFYLQQ 200 (206)
T ss_dssp HSC-CHHHHHHHCSEEEECCS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-ChHHHHHhCCEEEECCC-CccccHHHHHHHHHHHHHHHHHh
Confidence 100 1122222 245555554 899 9999999888766554
No 48
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.70 E-value=1.4e-15 Score=108.35 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=88.2
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-----CCCch--hh-------hc----------cc------
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-----HDGWD--DE-------LE----------CH------ 60 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-----~~~~~--~~-------~~----------~~------ 60 (176)
+|+|+|++||||||+++.|++.+|+++++.|++.+.... ...+. .. +. ..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999999999999999998764310 00000 00 00 00
Q ss_pred ccc---hH-------------HHHHHHHH---HhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477 61 VIN---ED-------------LVCDELED---IMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTG 119 (176)
Q Consensus 61 ~~~---~~-------------~l~~~i~~---~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~ 119 (176)
++. .. .+.+.+.. .+. +++|++..... .++. ++.+|||++|++++.+|+..|..
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~~~~~~~--~d~~i~l~a~~e~~~~R~~~r~~-- 158 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMGTAVFPE--AAHKFYLTASPEVRAWRRARERP-- 158 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCCCCCCTT--CSEEEEEECCHHHHHHHHHHTSS--
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEccceeEEEecC--CcEEEEEECCHHHHHHHHHhhcc--
Confidence 000 00 11112211 123 67888865433 2332 67899999999999999988753
Q ss_pred ccccchhHHHHHHHHHHHHHhcC----CC--C-cEEEecCCCHHHHHHHHHHHHH
Q 030477 120 AKLTNNIECEIFQVLLEEAKESY----PE--D-IVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~----~~--~-~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
.. . +.....+..+.+.+ .. + .+|+++..+++++.+.|..+++
T Consensus 159 --~~--~--~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 159 --QA--Y--EEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp --SC--H--HHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred --cC--H--HHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 1 12333333333333 22 3 5555554589999888877653
No 49
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.69 E-value=3.1e-15 Score=106.82 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=90.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchhhhcc----cccchHHHHHHHHHHhh----
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDDELEC----HVINEDLVCDELEDIME---- 76 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~i~~~~~---- 76 (176)
..++.+|+|+|++||||||+++.|++.+ ++.+++.|+++............+.. ..++...+.+.+...+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 97 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESARH 97 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCC
Confidence 3566789999999999999999999988 89999999876533211100000000 01122334443333221
Q ss_pred ------------cCCeEEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHH--HHHh
Q 030477 77 ------------QGGNIVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE--EAKE 140 (176)
Q Consensus 77 ------------~~~~vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~ 140 (176)
...+++|.......+ ...++.++|+++|++++.+|+..|++..+...+......+..+.. +...
T Consensus 98 ~~~~~~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~ 177 (207)
T 2qt1_A 98 SVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQ 177 (207)
T ss_dssp SSCCC-----CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGG
T ss_pred CCcCCCeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHH
Confidence 234566753211110 124688999999999999999888754332221111111111111 1112
Q ss_pred cCCCCcEEEecCC-CHHHHHHHHHHHHH
Q 030477 141 SYPEDIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 141 ~~~~~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
.+. +.++.+++. +++++.+.+...++
T Consensus 178 ~~~-~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 178 DIT-WEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp GCS-SCCEEEETTSCHHHHHHHHHHHHT
T ss_pred hcC-CeEEEecCCCCHHHHHHHHHHHHH
Confidence 222 345445544 89888888877664
No 50
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.68 E-value=6.4e-16 Score=111.62 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=91.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc----c----CCCchhhhcc-ccc----------------
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN----L----HDGWDDELEC-HVI---------------- 62 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~----~----~~~~~~~~~~-~~~---------------- 62 (176)
++.+|.|+|++||||||+++.||+++|+++++ .+++.... + +...++.... +++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 45789999999999999999999999999999 55443321 1 1111111111 100
Q ss_pred -----chHHHH----HHHHHHhhcCCeEEcCCCCC-CC---CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHH
Q 030477 63 -----NEDLVC----DELEDIMEQGGNIVDYHGCD-FF---PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129 (176)
Q Consensus 63 -----~~~~l~----~~i~~~~~~~~~vid~~~~~-~~---~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~ 129 (176)
..+.++ +.++.+...+++|+...... .+ +.....++|||++|++++.+|+.++.. ...+.. .+
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~---~~~~~a-~~ 167 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDC---IDEERA-KR 167 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHT---CCHHHH-HH
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCCCCeEEEEEECCHHHHHHHHHHhcC---CCHHHH-HH
Confidence 011222 33344445567777643322 23 332235799999999999999986531 111122 12
Q ss_pred HHHHHHHHHHhcCC------------CCcEEEecCCCHHHHHHHHHHHHH
Q 030477 130 IFQVLLEEAKESYP------------EDIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 130 ~~~~~~~~~~~~~~------------~~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
.+......+.+.|. .+.+|+++..+++++.+.|...++
T Consensus 168 ~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~ 217 (223)
T 3hdt_A 168 RIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR 217 (223)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence 34444444444443 367888877799999888887765
No 51
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.68 E-value=1.2e-16 Score=114.53 Aligned_cols=164 Identities=16% Similarity=0.062 Sum_probs=79.2
Q ss_pred ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH------------Hhhccc-CCCchhhhcccccchH--HH
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL------------VREKNL-HDGWDDELECHVINED--LV 67 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~--~l 67 (176)
+|+|.++++|+|+|+|||||||+++.|+++++..+++.+.+ ++.... ...+.......++..+ ..
T Consensus 3 ~m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~ 82 (215)
T 1nn5_A 3 HMAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ 82 (215)
T ss_dssp ----CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999875443332111 111000 0011110000000000 00
Q ss_pred HHHHHHHhhc-CCeEEcCCC--------------CC---CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhH
Q 030477 68 CDELEDIMEQ-GGNIVDYHG--------------CD---FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE 127 (176)
Q Consensus 68 ~~~i~~~~~~-~~~vid~~~--------------~~---~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~ 127 (176)
++.+...+.. ..+|+|... .+ .+.. ..++.+|||++|++++.+|+..|. ...+....
T Consensus 83 ~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~---~~~~~~~~ 159 (215)
T 1nn5_A 83 VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH---ERYENGAF 159 (215)
T ss_dssp HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC--------CTTCSHHH
T ss_pred HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccchHHH
Confidence 1223333333 346667210 00 0111 136889999999999999996431 12222111
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEec-CCCHHHHHHHHHHHHHHHH
Q 030477 128 CEIFQVLLEEAKESYPEDIVLALK-SDTIEDITRNIAILTDWVR 170 (176)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~ev~~~i~~~~~~~~ 170 (176)
.+.+...+......+.. .++.++ +.+++++.+.|..+++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~Id~~~~~e~~~~~i~~~l~~~l 202 (215)
T 1nn5_A 160 QERALRCFHQLMKDTTL-NWKMVDASKSIEAVHEDIRVLSEDAI 202 (215)
T ss_dssp HHHHHHHHHHHTTCTTS-CEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 22333333333333322 233333 3489999999888886553
No 52
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.68 E-value=1.5e-15 Score=110.69 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=90.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-----cCCCch------h--------------------
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-----LHDGWD------D-------------------- 55 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-----~~~~~~------~-------------------- 55 (176)
.++.+|+|+|++||||||+++.|++++|+++++.|++.+... ....+. .
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~ 93 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF 93 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence 467799999999999999999999999999999999886521 000100 0
Q ss_pred -hhcccc--cchHHH-----------------HHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHH-
Q 030477 56 -ELECHV--INEDLV-----------------CDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRL- 112 (176)
Q Consensus 56 -~~~~~~--~~~~~l-----------------~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~- 112 (176)
....+. +..+.+ .+.+..+..++++|++..... .++. .+.+|||++|++++.+|+
T Consensus 94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~~l~~--~d~vi~L~a~~e~~~~R~~ 171 (236)
T 1q3t_A 94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQ--AELKIFLVASVDERAERRY 171 (236)
T ss_dssp ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSSSGGG--CSEEEEEECCHHHHHHHHH
T ss_pred ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhhhccC--CCEEEEEECCHHHHHHHHH
Confidence 000000 111111 111222334567888865433 3433 578999999999999997
Q ss_pred ---hhcCCCCccccchhHHHHHHH-HHHHH----HhcCCC-C-cEEEecCCCHHHHHHHHHHHHH
Q 030477 113 ---TKRGYTGAKLTNNIECEIFQV-LLEEA----KESYPE-D-IVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 113 ---~~r~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~-~-~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
..|+.. ...+.... .+.. ..... .+.|.. + .+|++++.+++++.+.|..+++
T Consensus 172 ~~~~~R~~~--~~~e~~~~-~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l~ 233 (236)
T 1q3t_A 172 KENIAKGIE--TDLETLKK-EIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAE 233 (236)
T ss_dssp HHHHHTTCC--CCHHHHHH-HHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCC--CCHHHHHH-HHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445431 11111111 1111 11100 123433 3 5555554589999998887765
No 53
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.68 E-value=1.1e-15 Score=106.89 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe-ehhHH---HhhcccCCCchhhhcccccchHHHHHHHHHHhh--cCCeE
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI-NIGEL---VREKNLHDGWDDELECHVINEDLVCDELEDIME--QGGNI 81 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~v 81 (176)
++++|+|+|+|||||||+++.|++++|++++ +.+.+ ++.... .. ...+...-...+.+.+.+...+. ++.++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~-~g-~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi 81 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTP-GF-SGDPQEHPMWIPLMLDALQYASREAAGPLI 81 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTST-TC-CSCGGGSTTHHHHHHHHHHHHHHHCSSCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCc-cc-cchhhhhHHHHHHHHHHHHHHHHhCCCcEE
Confidence 6789999999999999999999999999988 53221 222111 11 00110000000223344444443 33456
Q ss_pred EcCCCCC---------CCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEec
Q 030477 82 VDYHGCD---------FFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALK 151 (176)
Q Consensus 82 id~~~~~---------~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (176)
+|..... .+... ..-..|||++|++++.+|+..|+.. + .. .+.+..++....+. ....+|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r-~-~~----~~~~~~~~~~~~~~-~~~~~Id~~ 154 (183)
T 2vli_A 82 VPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP-Q-VN----VGTVEDRLNELRGE-QFQTHIDTA 154 (183)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------CC----HHHHHHHHHHHTSG-GGCSEEECT
T ss_pred EeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc-c-hh----HHHHHHHHHhhccc-ccceEeeCC
Confidence 6743211 11101 1123599999999999999987632 2 11 12344444444332 223467666
Q ss_pred CCCHHHHHHHHHHHHH
Q 030477 152 SDTIEDITRNIAILTD 167 (176)
Q Consensus 152 ~~s~~ev~~~i~~~~~ 167 (176)
+.+++++.+.|...+.
T Consensus 155 ~~~~~~~~~~I~~~l~ 170 (183)
T 2vli_A 155 GLGTQQVAEQIAAQVG 170 (183)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5689998888877764
No 54
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.68 E-value=1.1e-15 Score=112.90 Aligned_cols=149 Identities=18% Similarity=0.233 Sum_probs=84.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh---cCCeEe--ehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCe
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES---TQLRHI--NIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGN 80 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~---l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 80 (176)
|.++++|+|+|+|||||||+++.|++. +|++++ +.|.+...... +.......+. ......+...+....+
T Consensus 1 M~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~~e~~~~--~~~~~~i~~~l~~~~v 75 (260)
T 3a4m_A 1 MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEKYEEFIK--KSTYRLIDSALKNYWV 75 (260)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGGGHHHHH--HHHHHHHHHHHTTSEE
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHHHHHHHH--HHHHHHHHHHhhCCEE
Confidence 356789999999999999999999998 688887 76766433221 2211111111 1122333344444667
Q ss_pred EEcCCCCCC-----CCC-----CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH---hcCC---C
Q 030477 81 IVDYHGCDF-----FPE-----RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK---ESYP---E 144 (176)
Q Consensus 81 vid~~~~~~-----~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~ 144 (176)
|+|...... +.. ..++.+|||++|++++.+|+.+|+.. . . .+.+..+..... +.|. .
T Consensus 76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~--~-~----~~~l~~~~~~~e~~~~~~~~~~~ 148 (260)
T 3a4m_A 76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK--I-P----NEVIKKMYEKFDEPGKKYKWDEP 148 (260)
T ss_dssp EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCS--S-C----HHHHHHHHHHCCCTTSSCGGGCC
T ss_pred EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCC--C-C----HHHHHHHHHHhcCccccCCCCCC
Confidence 888532110 000 12468999999999999999988631 1 1 122333322222 1221 2
Q ss_pred CcEEEecC-CCHHHHHHHHHHHH
Q 030477 145 DIVLALKS-DTIEDITRNIAILT 166 (176)
Q Consensus 145 ~~~i~~~~-~s~~ev~~~i~~~~ 166 (176)
..+++++. .+++++.+.|...+
T Consensus 149 ~~~Id~~~~~~~~ei~~~I~~~l 171 (260)
T 3a4m_A 149 FLIIDTTKDIDFNEIAKKLIEKS 171 (260)
T ss_dssp SEEEETTSCCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHhcc
Confidence 45555554 26777766665543
No 55
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.67 E-value=9.5e-16 Score=110.31 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=35.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK 47 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~ 47 (176)
|.++.+|+|+|++||||||+++.|++ +|+++++.|++.+..
T Consensus 1 M~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~ 41 (218)
T 1vht_A 1 MSLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQV 41 (218)
T ss_dssp -CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHH
Confidence 34567999999999999999999988 999999999987653
No 56
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.67 E-value=6.8e-15 Score=106.80 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=85.2
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehhHHHhhcccCCCchhhhcccc-----cch--HHHH---HHH-
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIGELVREKNLHDGWDDELECHV-----INE--DLVC---DEL- 71 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~l~---~~i- 71 (176)
.+.++.+|+|.|++||||||+++.|++.++ ..++.... +. ....+.....++ ... ..++ ...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~----p~-~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE----PG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT----TT-TCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC----CC-CCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 345778999999999999999999999986 45543211 00 011111111111 111 1111 111
Q ss_pred ------HHHhhc-CCeEEcC-----CCCCCCCC-----------------CcccEEEEEeCChHHHHHHHhhcCCCCccc
Q 030477 72 ------EDIMEQ-GGNIVDY-----HGCDFFPE-----------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKL 122 (176)
Q Consensus 72 ------~~~~~~-~~~vid~-----~~~~~~~~-----------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~ 122 (176)
...+.. ..+|+|. .....+++ ..++.+|||++|++++.+|+.+|+....+.
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~ 176 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRL 176 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccch
Confidence 112223 3456671 01111111 147899999999999999999987543444
Q ss_pred cch--hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 123 TNN--IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 123 ~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
+.. ...+++...+......|. ..++.+++. +++++.+.|..+++.+
T Consensus 177 e~~~~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 177 DQEDLKFHEKVIEGYQEIIHNES-QRFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCT-TTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 321 112233333443333343 345555554 8999999998888654
No 57
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.67 E-value=8.7e-16 Score=107.00 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=82.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHHhhcccC-CCc--hhhhccc--ccc-------hHHHHHHHHHH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGELVREKNLH-DGW--DDELECH--VIN-------EDLVCDELEDI 74 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~~~~~~~-~~~--~~~~~~~--~~~-------~~~l~~~i~~~ 74 (176)
+++|+|+|+|||||||+++.|+++++.+++ +.|++....... ... +..+... ... ...+...+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM 82 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999987766 467765432211 000 0000000 000 11222233444
Q ss_pred hhc-CCeEEcCCCCC----------CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC
Q 030477 75 MEQ-GGNIVDYHGCD----------FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP 143 (176)
Q Consensus 75 ~~~-~~~vid~~~~~----------~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (176)
... ..+|++..... .+. .....+|||+||++++.+|+.+|+...... . ...... ...|.
T Consensus 83 ~~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~---~-----~~~~~~-~~~~~ 152 (178)
T 1qhx_A 83 ARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCDGAVAEGRETARGDRVAGM---A-----AKQAYV-VHEGV 152 (178)
T ss_dssp HHTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECCHHHHHHHHHHTSSSCTTH---H-----HHHTTG-GGTTC
T ss_pred HhcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECCHHHHHHHHHhhCCcccch---h-----hhhchh-hccCC
Confidence 433 35777753211 111 112357889999999999999886422111 0 001111 11232
Q ss_pred -CCcEEEecCCCHHHHHHHHHHH
Q 030477 144 -EDIVLALKSDTIEDITRNIAIL 165 (176)
Q Consensus 144 -~~~~i~~~~~s~~ev~~~i~~~ 165 (176)
.+.++++++.+++++.+.|...
T Consensus 153 ~~d~~idt~~~~~~~~~~~I~~~ 175 (178)
T 1qhx_A 153 EYDVEVDTTHKESIECAWAIAAH 175 (178)
T ss_dssp CCSEEEETTSSCHHHHHHHHHTT
T ss_pred CCcEEEECCCCCHHHHHHHHHHH
Confidence 3677777777898887776543
No 58
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.66 E-value=3e-15 Score=106.86 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe--Eeeh----hHHHhhcccC-C---CchhhhcccccchH---HHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR--HINI----GELVREKNLH-D---GWDDELECHVINED---LVCDELED 73 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~----~~~~~~~~~~-~---~~~~~~~~~~~~~~---~l~~~i~~ 73 (176)
+++++|+|+|+|||||||+++.|+++++.. ++.. ++.++..... . .+.......++..+ .+.+.+..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~ 81 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILP 81 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999998763 4432 2222211000 0 01110000000000 11111222
Q ss_pred Hhh-cCCeEEcCCC--------------------CCCCCCCcccEEEEEeCChHHHHHHHh-hcCCCCc--------ccc
Q 030477 74 IME-QGGNIVDYHG--------------------CDFFPERWFDRVVVLQTENSVLYDRLT-KRGYTGA--------KLT 123 (176)
Q Consensus 74 ~~~-~~~~vid~~~--------------------~~~~~~~~~~~vi~l~~~~~~~~~R~~-~r~~~~~--------~~~ 123 (176)
.+. +..+|+|... ...++ .++.+|||++|++++.+|+. .|+.... ...
T Consensus 82 ~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~ 159 (213)
T 2plr_A 82 MLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAI--KPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGL 159 (213)
T ss_dssp HHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSC--CCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTS
T ss_pred HHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCC--CCCEEEEEeCCHHHHHHHHhccccccccccccccccccc
Confidence 333 3456777421 11122 26789999999999999998 7762111 000
Q ss_pred chhHH-----HHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 124 NNIEC-----EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 124 ~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
+..+. .++...+......+ ...+|+.+ .+++++.+.|..+++.+
T Consensus 160 d~~e~~~~~~~r~~~~~~~~~~~~-~~~~Id~~-~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 160 SPEEGFLKYQGLITEVYDKLVKDE-NFIVIDGT-KTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTT-TCEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHhhC-CEEEEECC-CCHHHHHHHHHHHHHHH
Confidence 00111 12222222222222 22334332 48999999998887654
No 59
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.66 E-value=4.6e-16 Score=112.58 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=83.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc-------CCeEeehhHHHhhcccCCCchhhhccc-------------ccc--
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST-------QLRHINIGELVREKNLHDGWDDELECH-------------VIN-- 63 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-- 63 (176)
|+++.+|+|.|++||||||+++.|++.+ |..++.. +++. ....++....+ ++.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----rep~-~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----REPG-GTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ESSS-SSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cCCC-CChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999988 4444321 2221 11111111111 110
Q ss_pred -hHHHHHHHHHHhhcCCe-EEcCC---------CCCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477 64 -EDLVCDELEDIMEQGGN-IVDYH---------GCDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTG 119 (176)
Q Consensus 64 -~~~l~~~i~~~~~~~~~-vid~~---------~~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~ 119 (176)
.+.+.+.+...+..+.+ |.|.. ....++. ..||++|||++|++++.+|+.+|+. .
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-~ 175 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-P 175 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-C
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-c
Confidence 01222334434444544 45621 0011111 2489999999999999999998852 2
Q ss_pred ccccch--hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHH
Q 030477 120 AKLTNN--IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDW 168 (176)
Q Consensus 120 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~ 168 (176)
...+.. ...+.....+......+. ..++.+|+. +++++.+.|..+++.
T Consensus 176 dr~E~~~~ef~~rv~~~Y~~la~~~~-~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 176 DKFESESDAFFARTRAEYLRRAQEAP-HRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHCT-TTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHhc-CCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 333321 112333344444444453 345556654 899999998887764
No 60
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.65 E-value=1.3e-15 Score=108.36 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=82.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC---------Cchhh------------hcccccchHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD---------GWDDE------------LECHVINEDLVC 68 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~l~ 68 (176)
++|+|+|++||||||+++.|++ +|+++++.|++.+...... .++.. ....++......
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5899999999999999999999 9999999999876532100 00000 001111111111
Q ss_pred HH------------HHHHh---hc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477 69 DE------------LEDIM---EQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI 130 (176)
Q Consensus 69 ~~------------i~~~~---~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~ 130 (176)
.. +...+ .+ +.+|+|..... .+ ...++.+|||++|++++.+|+..|+... +.. .++
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~-~~~~~~~i~l~~~~e~~~~Rl~~R~~~~----~~~-~~~ 154 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGT-YKNYDKLIVVYAPYEVCKERAIKRGMSE----EDF-ERR 154 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTC-GGGSSEEEEECCCHHHHHHHHHHTCCCH----HHH-HHH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCc-hhhCCEEEEEECCHHHHHHHHHHcCCCH----HHH-HHH
Confidence 11 11111 22 45677764321 11 1236789999999999999999884311 111 011
Q ss_pred HHHHHHHHHhcCC-CCcEEEecCCCHHHHHHHHHHHHH
Q 030477 131 FQVLLEEAKESYP-EDIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 131 ~~~~~~~~~~~~~-~~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
+...... .+.+. .+.+|+.+ .+++++.+.+..+++
T Consensus 155 ~~~~~~~-~~~~~~ad~vId~~-~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 155 WKKQMPI-EEKVKYADYVIDNS-GSIEETYKQVKKVYE 190 (204)
T ss_dssp HTTSCCH-HHHGGGCSEECCCS-SCHHHHHHHHHHHHH
T ss_pred HHhCCCh-hHHHhcCCEEEECC-CCHHHHHHHHHHHHH
Confidence 1111110 11111 13443332 488888888877765
No 61
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.65 E-value=2.8e-15 Score=105.99 Aligned_cols=143 Identities=19% Similarity=0.236 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc------CCCchhh-----------hccccc-chHH---
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL------HDGWDDE-----------LECHVI-NEDL--- 66 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~------~~~~~~~-----------~~~~~~-~~~~--- 66 (176)
...+|.|+|++||||||+++.|++.+|++++++|++.+.... ...++.. ....++ +.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~ 90 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKK 90 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHH
Confidence 457899999999999999999999889999999999765421 0111110 111111 1110
Q ss_pred --------HHHHHHHHhh--cCCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHH
Q 030477 67 --------VCDELEDIME--QGGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVL 134 (176)
Q Consensus 67 --------l~~~i~~~~~--~~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 134 (176)
+...+..... ++.+|+|.... ..+. ..++.+||+++|++++.+|+. . . .+..+
T Consensus 91 l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~~~-~~~d~vi~v~a~~e~r~~Rli---------~----~-q~~~~ 155 (192)
T 2grj_A 91 LELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMGLD-QLCDHVITVVASRETILKRNR---------E----A-DRRLK 155 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTTGG-GGCSEEEEEECCHHHHHHHCS---------S----H-HHHHT
T ss_pred HHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecChH-HhCCEEEEEECCHHHHHHHHH---------H----h-cCCch
Confidence 1111111121 22456675421 1111 236789999999999999981 0 0 01000
Q ss_pred HHHHHhcCCC-CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 135 LEEAKESYPE-DIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 135 ~~~~~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
+ .+.... +.+|+ |+.+++++.+.+.++++.+
T Consensus 156 ~---~~~~~~AD~vI~-n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 156 F---QEDIVPQGIVVA-NNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp T---CTTCCCCSEEEE-CSSCHHHHHHHHHHHHHHH
T ss_pred h---hhHHhcCCEEEE-CCCCHHHHHHHHHHHHHHH
Confidence 0 112222 44544 4468999999999988776
No 62
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.64 E-value=1.1e-15 Score=111.24 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc---CCe-Eeeh--------hHHHhhcccC----CCchhhhccccc---chHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST---QLR-HINI--------GELVREKNLH----DGWDDELECHVI---NEDL 66 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l---~~~-~~~~--------~~~~~~~~~~----~~~~~~~~~~~~---~~~~ 66 (176)
.+++.+|+|.|++||||||+++.|++.+ |+. ++.. ++.++..... ..+.......++ ..+.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999987 343 2211 1111111100 011111111111 1122
Q ss_pred HHHHHHHHhhcCCe-EEcCC--------CC-CCCC-------------CCcccEEEEEeCChHHHHHHHhhcCCCCcccc
Q 030477 67 VCDELEDIMEQGGN-IVDYH--------GC-DFFP-------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLT 123 (176)
Q Consensus 67 l~~~i~~~~~~~~~-vid~~--------~~-~~~~-------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~ 123 (176)
+.+.+...+..+.+ |.|.. .. ..++ ...||++|||++|++++.+|+.+|+.. .+.+
T Consensus 104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~-dr~E 182 (236)
T 3lv8_A 104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL-DRIE 182 (236)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC-CTTT
T ss_pred HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc-chhh
Confidence 23334444444544 44521 00 0111 024899999999999999999988631 2222
Q ss_pred c--hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHHh
Q 030477 124 N--NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVRN 171 (176)
Q Consensus 124 ~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~ 171 (176)
. ....+.....+......+.. ++.+|+. +++++.+.|..+++.+..
T Consensus 183 ~~~~~~~~rv~~~y~~la~~~~~--~~vIDa~~sieeV~~~I~~~l~~~l~ 231 (236)
T 3lv8_A 183 KMDISFFERARERYLELANSDDS--VVMIDAAQSIEQVTADIRRALQDWLS 231 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCTT--EEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 2 12223344444444443443 5556654 899999999988876543
No 63
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.64 E-value=1.3e-14 Score=104.17 Aligned_cols=160 Identities=17% Similarity=0.162 Sum_probs=88.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CC-eEeeh--------hHHHhhccc--C----CCchhhhccccc---chHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QL-RHINI--------GELVREKNL--H----DGWDDELECHVI---NEDL 66 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~-~~~~~--------~~~~~~~~~--~----~~~~~~~~~~~~---~~~~ 66 (176)
++++|+|.|++||||||+++.|++.+ |+ .++.. ++.++.... . ..+.......++ +.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~ 81 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL 81 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHH
Confidence 57899999999999999999999987 44 32211 111221111 0 111111111111 1122
Q ss_pred HHHHHHHHhhcCCeEE-cCC-------C--CCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCCcccc
Q 030477 67 VCDELEDIMEQGGNIV-DYH-------G--CDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLT 123 (176)
Q Consensus 67 l~~~i~~~~~~~~~vi-d~~-------~--~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~ 123 (176)
+.+.|...+..+.+|| |.. + ...++. ..||++|||++|++++.+|+.+|+.. .+.+
T Consensus 82 ~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~-dr~E 160 (213)
T 4tmk_A 82 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL-DRIE 160 (213)
T ss_dssp HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC-CTTT
T ss_pred HHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-cchh
Confidence 3333444455555544 521 0 001111 14899999999999999999988642 2232
Q ss_pred c--hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHH
Q 030477 124 N--NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVR 170 (176)
Q Consensus 124 ~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~ 170 (176)
. ....+.....+......+ ..++.+|+. ++++|.+.|..+++.+.
T Consensus 161 ~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~s~eeV~~~I~~~l~~~l 208 (213)
T 4tmk_A 161 QESFDFFNRTRARYLELAAQD--KSIHTIDATQPLEAVMDAIRTTVTHWV 208 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHTC--TTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHC--CcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 1 111223333343333333 345556655 89999999998886553
No 64
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.64 E-value=6.5e-16 Score=113.68 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe----------EeehhHHHhhcccCCCch-hhhcccc------cchHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR----------HINIGELVREKNLHDGWD-DELECHV------INEDLVCD 69 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~l~~ 69 (176)
.++.+|+|+|++||||||+|+.|++.+|++ +++.|++.+..... ... .....+. ++.+.+.+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~-~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSE-QKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHH-HHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChh-hhhhhccCCCCCCCcchhhHHHHHH
Confidence 456789999999999999999999999987 79999987632110 000 0001111 22233445
Q ss_pred HHHHHhh-------------------------cCCeEEcCCCCCCCCC----CcccEEEEEeCChHHHHHHHhhcC
Q 030477 70 ELEDIME-------------------------QGGNIVDYHGCDFFPE----RWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 70 ~i~~~~~-------------------------~~~~vid~~~~~~~~~----~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
.++.+.. ...+|+|... .+.. ..++.+|||++|++++.+|+..|+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~--~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 172 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL--AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRD 172 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT--TTSSHHHHHHCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeec--cccCHHHHHhcCeeEEEeCCHHHHHHHHHHHH
Confidence 5554421 1345667532 2211 125789999999999999998774
No 65
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.63 E-value=1.7e-14 Score=103.59 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh--------HHHhhcccCC---Cchhhhcccccc---hHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG--------ELVREKNLHD---GWDDELECHVIN---EDLVCD 69 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~---~~~l~~ 69 (176)
+++++|+|.|++||||||+++.|++.+ |+.++... +.++...... .+.......++. .+.+.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~ 83 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG 83 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999987 45554321 1122111100 111111111111 122233
Q ss_pred HHHHHhhcCCe-EEcCC-------C-C-CCCC-------------CCcccEEEEEeCChHHHHHHHhhcCCCCccccc--
Q 030477 70 ELEDIMEQGGN-IVDYH-------G-C-DFFP-------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN-- 124 (176)
Q Consensus 70 ~i~~~~~~~~~-vid~~-------~-~-~~~~-------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~-- 124 (176)
.+...+..+.+ |.|.. + . ..++ ...||++|||++|++++.+|+.+|+. ....+.
T Consensus 84 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~-~dr~E~~~ 162 (213)
T 4edh_A 84 VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR-LDRFEQED 162 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS-CCTTTTSC
T ss_pred HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC-cCcccccH
Confidence 34434444544 44521 0 0 0111 02489999999999999999998853 122322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 125 NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
....+.....+......+.. .++.+|+. +++++.+.|..+++.+
T Consensus 163 ~~~~~rv~~~y~~l~~~~~~-~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 163 RRFFEAVRQTYLQRAAQAPE-RYQVLDAGLPLAEVQAGLDRLLPNL 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 12223344444444444543 45556655 8999999998888654
No 66
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.63 E-value=2.7e-14 Score=101.97 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=82.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc--CCeEeeh--------hHHHhhcccC-CCchhhhcccccc---hHHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST--QLRHINI--------GELVREKNLH-DGWDDELECHVIN---EDLVCDELEDIM 75 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~---~~~l~~~i~~~~ 75 (176)
++|+|.|+.||||||+++.|++.| |..++.. ++.++..... ..+.......++. .+.+.+.+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l 82 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPAL 82 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999988 5555432 1122221111 1111111111111 122333334444
Q ss_pred hcCCeEE-cCCC---------CCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCCccccch-h-HHHH
Q 030477 76 EQGGNIV-DYHG---------CDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN-I-ECEI 130 (176)
Q Consensus 76 ~~~~~vi-d~~~---------~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~-~-~~~~ 130 (176)
..+.+|| |... ...++. ..||++|||++|++++.+|+.+|+....+++.. . ..+.
T Consensus 83 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~ 162 (205)
T 4hlc_A 83 KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEK 162 (205)
T ss_dssp HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHHHH
T ss_pred HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHHHH
Confidence 5555554 5210 001111 148999999999999999999887654444421 1 1122
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHH
Q 030477 131 FQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDW 168 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~ 168 (176)
....+......+. ..++.+|+. ++++|.+.|...+..
T Consensus 163 v~~~Y~~l~~~~~-~~~~~IDa~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 163 VIEGYQEIIHNES-QRFKSVNADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp HHHHHHHHHHSCC-TTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 2223333333333 345566655 899998888777643
No 67
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.63 E-value=1.7e-14 Score=101.56 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=80.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHH--------hhcccCCCchhhhcccccch---HHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---QLRHINIGELV--------REKNLHDGWDDELECHVINE---DLVCDELEDIM 75 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~ 75 (176)
++|+|+|+|||||||+++.|++++ |++++++++.. +.......+.......++.. ..+.+.+...+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~l 80 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDL 80 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 99999875311 00000000000000000011 11111222223
Q ss_pred hcC-CeEEcCCC---------CCCCC------------C-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477 76 EQG-GNIVDYHG---------CDFFP------------E-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ 132 (176)
Q Consensus 76 ~~~-~~vid~~~---------~~~~~------------~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 132 (176)
..+ .+++|... ...+. . ..++.+|||++|++++.+|+.+|+. .+.....++..
T Consensus 81 ~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~----~~~~~~~~~~~ 156 (195)
T 2pbr_A 81 KRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNR----FENKEFLEKVR 156 (195)
T ss_dssp HTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTC----CCCHHHHHHHH
T ss_pred hCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCc----cchHHHHHHHH
Confidence 333 35556210 00010 0 1378999999999999999986543 11111122333
Q ss_pred HHHHHHHhcCCCCcEEEecC-CCHHHHHHHHHHHHH
Q 030477 133 VLLEEAKESYPEDIVLALKS-DTIEDITRNIAILTD 167 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~ 167 (176)
..+......| +.++.+++ .+++++.+.+..+++
T Consensus 157 ~~~~~~~~~~--~~~~~Id~~~~~~~~~~~i~~~l~ 190 (195)
T 2pbr_A 157 KGFLELAKEE--ENVVVIDASGEEEEVFKEILRALS 190 (195)
T ss_dssp HHHHHHHHHS--TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCEEEEECCCCHHHHHHHHHHHHH
Confidence 3333333334 33344444 489998888887765
No 68
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.63 E-value=9.2e-15 Score=103.23 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=76.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---CCeEeehhH--------HHhhcccCCCchhhhcccccch---HHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---QLRHINIGE--------LVREKNLHDGWDDELECHVINE---DLVCDELEDIM 75 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~ 75 (176)
++|+|+|++||||||+++.|++.+ |++++..++ .++.......+.......++.. ..+.+ +...+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-i~~~l 79 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE-IKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-HTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 379999999999999999999998 999886533 1111100001100000000000 01111 22222
Q ss_pred hcC-CeEEcCC-----CCCC----CC-------------CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477 76 EQG-GNIVDYH-----GCDF----FP-------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ 132 (176)
Q Consensus 76 ~~~-~~vid~~-----~~~~----~~-------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 132 (176)
..+ .+++|.. .... +. ...++.+|||++|++++.+|+.+|+. .+.........
T Consensus 80 ~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~----~~~~~~~~~~~ 155 (197)
T 2z0h_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR----FEKREFLERVR 155 (197)
T ss_dssp ---CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CC----CCCHHHHHHHH
T ss_pred hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCc----ccHHHHHHHHH
Confidence 233 3455521 0001 11 01378999999999999999998843 22222122333
Q ss_pred HHHHHHHhcCCCCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 133 VLLEEAKESYPEDIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
..+......+... ++.+++ .+++++.+.+..+++.
T Consensus 156 ~~~~~~~~~~~~~-~~~Id~~~~~e~~~~~i~~~l~~ 191 (197)
T 2z0h_A 156 EGYLVLAREHPER-IVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHCTTT-EEEEETTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCC-EEEEeCCCCHHHHHHHHHHHHHH
Confidence 3334334444432 333443 4899888888777643
No 69
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.63 E-value=3.8e-16 Score=111.67 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=81.0
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcc--------------cccchH--HHH
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELEC--------------HVINED--LVC 68 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~--~l~ 68 (176)
+|.++++|+|+|+|||||||+++.|+++++..+++.+ .++.+......+..... .++..+ ..+
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM 84 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3557889999999999999999999999876655542 22222100000000000 001000 001
Q ss_pred HHHHHHh-hcCCeEEcCCCC--------------CCC---CC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477 69 DELEDIM-EQGGNIVDYHGC--------------DFF---PE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC 128 (176)
Q Consensus 69 ~~i~~~~-~~~~~vid~~~~--------------~~~---~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~ 128 (176)
+.+...+ .+..+++|.... +.+ .. ..++.+|||++|++++.+|+..|. .+.+.....
T Consensus 85 ~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~---~r~~~~~~~ 161 (212)
T 2wwf_A 85 NEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE---EIYEKVETQ 161 (212)
T ss_dssp HHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS---STTCSHHHH
T ss_pred HHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc---ccccHHHHH
Confidence 1233333 334566663210 000 01 246889999999999999987542 112211111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 129 EIFQVLLEEAKESYPEDIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
.++...+. +.......+.+++ .+++++.+.+..+++.
T Consensus 162 ~~~~~~~~---~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~ 199 (212)
T 2wwf_A 162 KKIYETYK---HFAHEDYWINIDATRKIEDIHNDIVKEVTK 199 (212)
T ss_dssp HHHHHHGG---GGTTCTTEEEEECSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH---HHhccCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 12212221 1211223344444 4899888888877653
No 70
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.62 E-value=6.6e-16 Score=107.64 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=66.1
Q ss_pred CeEEEECCCCCChHHHHHHHHH-hcCCeEeehhHHHhhcccC-C----CchhhhcccccchHHHHHHHHHHh----hcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAE-STQLRHINIGELVREKNLH-D----GWDDELECHVINEDLVCDELEDIM----EQGG 79 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~-~l~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~l~~~i~~~~----~~~~ 79 (176)
.+|+|+|+|||||||+++.|++ .+|+.+++.|.+....... . .+.......+ .+.+.+.+...+ .+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~g~~ 80 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV--TGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHH--HHHHHHHHHHHHTSCSSCCE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHH--HHHHHHHHHHHHhhccCCCe
Confidence 5899999999999999999999 6899999987654432211 0 1111111000 122334444444 3456
Q ss_pred eEEcCCCCCC-----CCC-----CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 80 NIVDYHGCDF-----FPE-----RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 80 ~vid~~~~~~-----~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+|+|...... +.. .....+|||++|++++.+|+..|+.
T Consensus 81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (181)
T ss_dssp EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence 7888543211 110 0123689999999999999998763
No 71
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.62 E-value=1.6e-14 Score=107.87 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=86.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCC--------chhh------------hcccccch-H
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDG--------WDDE------------LECHVINE-D 65 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~--------~~~~------------~~~~~~~~-~ 65 (176)
++.+|+|+|++||||||+|+.|+ ++|++++++|++.+.... ... ++.. ....++.. +
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~ 152 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKK 152 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHH
Confidence 46789999999999999999998 589999999998654211 000 0000 00011111 1
Q ss_pred H---------------HHHHHHHHhhc--CCeEEcCCCCCCCCC---CcccEEEEEeCChHHHHHHHhhcCCCCccccch
Q 030477 66 L---------------VCDELEDIMEQ--GGNIVDYHGCDFFPE---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN 125 (176)
Q Consensus 66 ~---------------l~~~i~~~~~~--~~~vid~~~~~~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~ 125 (176)
. +.+.+...... ..+|+|... .+.. ..++.+|||++|++++.+|+.+|+. ...+.
T Consensus 153 ~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~--l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g---~s~e~ 227 (281)
T 2f6r_A 153 QMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAM--LLEAGWQSMVHEVWTVVIPETEAVRRIVERDG---LSEAA 227 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT--TTTTTGGGGCSEEEEEECCHHHHHHHHHHHHC---CCHHH
T ss_pred HHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEech--hhccchHHhCCEEEEEcCCHHHHHHHHHHcCC---CCHHH
Confidence 0 01111111121 346777643 2221 2368899999999999999998841 11111
Q ss_pred hHHHHHHHHHHH-HHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477 126 IECEIFQVLLEE-AKESYPEDIVLALKSDTIEDITRNIAILTDWVRN 171 (176)
Q Consensus 126 ~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~ 171 (176)
.. .++...... ....+ .+.+|+.+ .+++++.+.+..+++.+..
T Consensus 228 ~~-~ri~~q~~~~~~~~~-AD~vIdn~-~s~eel~~~I~~~l~~l~~ 271 (281)
T 2f6r_A 228 AQ-SRLQSQMSGQQLVEQ-SNVVLSTL-WESHVTQSQVEKAWNLLQK 271 (281)
T ss_dssp HH-HHHHTSCCHHHHHHT-CSEEEECS-SCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHcCChHhhHhh-CCEEEECC-CCHHHHHHHHHHHHHHHHH
Confidence 11 111111100 01011 24555443 4899999999988876643
No 72
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.62 E-value=3.9e-15 Score=105.80 Aligned_cols=159 Identities=14% Similarity=0.022 Sum_probs=84.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcc-------cC---CCchhhhcccccchHH--HHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKN-------LH---DGWDDELECHVINEDL--VCDELE 72 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~--l~~~i~ 72 (176)
|+++++|+|+|++||||||+++.|++++ |+++++.++..+... .+ ..+.......++..+. ..+.+.
T Consensus 1 m~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~ 80 (204)
T 2v54_A 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQ 80 (204)
T ss_dssp CCCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998 687776543221110 00 0111000000000000 012233
Q ss_pred HHhhcC-CeEEcCCC-------------CCC-----CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHH
Q 030477 73 DIMEQG-GNIVDYHG-------------CDF-----FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQV 133 (176)
Q Consensus 73 ~~~~~~-~~vid~~~-------------~~~-----~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~ 133 (176)
..+..+ .+|+|... .+. .....++.+|||++|++++.+ +|+. ...+.....+++..
T Consensus 81 ~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~--d~~e~~~~~~rl~~ 155 (204)
T 2v54_A 81 EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGE--EIYEDVTFQQKVLQ 155 (204)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSS--STTCCSHHHHHHHH
T ss_pred HHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCc--ccccHHHHHHHHHH
Confidence 333333 45656210 000 001237899999999999877 4532 11221122234444
Q ss_pred HHHHHHhcCCCCcEEEecC-CCHHHHHHHHHHHHHHHH
Q 030477 134 LLEEAKESYPEDIVLALKS-DTIEDITRNIAILTDWVR 170 (176)
Q Consensus 134 ~~~~~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~~~~ 170 (176)
.+......+.. .++.+++ .+++++.+.|..+++...
T Consensus 156 ~y~~~~~~~~~-~~~~Id~~~~~~~v~~~i~~~l~~~l 192 (204)
T 2v54_A 156 EYKKMIEEGDI-HWQIISSEFEEDVKKELIKNIVIEAI 192 (204)
T ss_dssp HHHHHHTTCSS-CEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-cEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 44444443433 3344444 489999999988886543
No 73
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.62 E-value=3.7e-15 Score=105.76 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~ 46 (176)
+++.+|+|+|++||||||+++.|++. |+++++.|++.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~ 44 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAAR 44 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHH
Confidence 46789999999999999999999998 9999999988654
No 74
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.58 E-value=7.2e-15 Score=105.57 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=88.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcc---------------ccc--chHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELEC---------------HVI--NEDLVC 68 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~--~~~~l~ 68 (176)
|.++.+|+|.|++||||||+++.|++.++..+.- .+++....+.++.... .++ +...+.
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999763211 1111101111111110 111 111122
Q ss_pred HHHHHHhhcCCeEE-cCC--------CCCCCC-------------CCcccEEEEE-eCChHHHHHHHhhcCCCCccccch
Q 030477 69 DELEDIMEQGGNIV-DYH--------GCDFFP-------------ERWFDRVVVL-QTENSVLYDRLTKRGYTGAKLTNN 125 (176)
Q Consensus 69 ~~i~~~~~~~~~vi-d~~--------~~~~~~-------------~~~~~~vi~l-~~~~~~~~~R~~~r~~~~~~~~~~ 125 (176)
+.|...+..+.+|| |.. ....++ ...||++||| ++|++++.+|+..++ .+.+..
T Consensus 78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~---dr~E~~ 154 (216)
T 3tmk_A 78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD---ERYETV 154 (216)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC---CTTCCH
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc---ccccHH
Confidence 33444444455444 521 000110 0248999999 999999999975432 333332
Q ss_pred hHHHHHHHHHHHHHhc---CCCCcEEEec-C-CCHHHHHHHHHHHHHHHH
Q 030477 126 IECEIFQVLLEEAKES---YPEDIVLALK-S-DTIEDITRNIAILTDWVR 170 (176)
Q Consensus 126 ~~~~~~~~~~~~~~~~---~~~~~~i~~~-~-~s~~ev~~~i~~~~~~~~ 170 (176)
...+.....+...... +.+..++.+| + .++++|.+.|..+++.+.
T Consensus 155 ~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l 204 (216)
T 3tmk_A 155 KFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL 204 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 2233444444444433 3444566666 4 499999999999886543
No 75
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.56 E-value=1.8e-14 Score=102.74 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhh-----------------------hcc
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDE-----------------------LEC 59 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 59 (176)
.-|.++++|+|+|||||||||+++.|++.++. ..++.+...+.+......+.. ...
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYAN 86 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCC
Confidence 45778899999999999999999999998843 333333333322211100000 000
Q ss_pred cccchHHHHHHHHHHh-hcCCeEEcCCC--CCCCCCCcc---cEEEEEe-CChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477 60 HVINEDLVCDELEDIM-EQGGNIVDYHG--CDFFPERWF---DRVVVLQ-TENSVLYDRLTKRGYTGAKLTNNIECEIFQ 132 (176)
Q Consensus 60 ~~~~~~~l~~~i~~~~-~~~~~vid~~~--~~~~~~~~~---~~vi~l~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 132 (176)
..+ ......+...+ .+..+|+|... ...+....+ ..+|||+ +|++++.+|+..|+...+ +.. ..++.
T Consensus 87 ~~~--~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~---~~i-~~rl~ 160 (204)
T 2qor_A 87 NFY--GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKP---EEI-NKRMQ 160 (204)
T ss_dssp EEE--EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCH---HHH-HHHHH
T ss_pred Cee--cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCH---HHH-HHHHH
Confidence 001 00112333333 34567776321 111111112 2689998 999999999998874211 111 11222
Q ss_pred HHHHHHH---hcCCCCcEEEecCCCHHHHHHHHHHHHHH
Q 030477 133 VLLEEAK---ESYPEDIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 133 ~~~~~~~---~~~~~~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
....+.. ..+. +.++ +|. +++++.+.+..++..
T Consensus 161 ~~~~~~~~~~~~~~-d~vi-~n~-~~e~~~~~i~~~i~~ 196 (204)
T 2qor_A 161 ELTREMDEADKVGF-NYFI-VND-DLARTYAELREYLLG 196 (204)
T ss_dssp HHHHHHHHHHHHTC-SEEE-ECS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccC-cEEE-ECc-CHHHHHHHHHHHHHH
Confidence 2222221 1111 3333 343 788887777777654
No 76
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.55 E-value=1.7e-13 Score=97.26 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=82.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---CCeEeehh--------HHHhhcccCCCchhhhccccc--chHHHHHHHHHHhh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---QLRHINIG--------ELVREKNLHDGWDDELECHVI--NEDLVCDELEDIME 76 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~i~~~~~ 76 (176)
.+|+|.|+.||||||+++.|++.| |..++... +.++...............++ +.....+.+...+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~ 80 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS 80 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999987 66665321 112211111111111111111 11223344544555
Q ss_pred cCCeEE-cCC---------CCCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHH
Q 030477 77 QGGNIV-DYH---------GCDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQV 133 (176)
Q Consensus 77 ~~~~vi-d~~---------~~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~ 133 (176)
.+.+|| |.. ....... ..||+++||++|++++.+|...++ +.++....+....
T Consensus 81 ~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----r~e~~ef~~rv~~ 156 (197)
T 3hjn_A 81 EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----RFEKREFLERVRE 156 (197)
T ss_dssp TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----TTCCHHHHHHHHH
T ss_pred CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----ccccHHHHHHHHH
Confidence 555555 421 0001110 148999999999999999965443 2332222333333
Q ss_pred HHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHH
Q 030477 134 LLEEAKESYPEDIVLALKSD-TIEDITRNIAILTD 167 (176)
Q Consensus 134 ~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~ 167 (176)
.+......+.. .++.+|+. ++++|.+.|.+.++
T Consensus 157 ~y~~la~~~~~-~~~~IDa~~~~eeV~~~I~~~i~ 190 (197)
T 3hjn_A 157 GYLVLAREHPE-RIVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp HHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCC-CEEEEcCCCCHHHHHHHHHHHHH
Confidence 44444444443 45556665 89999998887764
No 77
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.54 E-value=5e-13 Score=97.81 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=68.5
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc-----ccccchHHHHHHHHHHh--
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE-----CHVINEDLVCDELEDIM-- 75 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~l~~~i~~~~-- 75 (176)
.++.++.+|+|.|++||||||+++.|++++|+..++.+++.+..... ...+.... ...+....+.+.+...+
T Consensus 22 ~~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 22 SMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp ----CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HhcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 33456789999999999999999999999999999998887653211 11111110 11122223333343322
Q ss_pred -hcCCeEEcCCCCC-----CCC-CCcccEEEEEeCChHHHHHHHhhc
Q 030477 76 -EQGGNIVDYHGCD-----FFP-ERWFDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 76 -~~~~~vid~~~~~-----~~~-~~~~~~vi~l~~~~~~~~~R~~~r 115 (176)
.+.+++++..... .+. ...++.++||++|++++.+|+..|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r 148 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR 148 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC
Confidence 2356777632111 000 023678999999999999999766
No 78
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.51 E-value=8.4e-14 Score=97.71 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=78.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCchhhhcccccchHHHHH----HHHHHhh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGWDDELECHVINEDLVCD----ELEDIME 76 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~i~~~~~ 76 (176)
.+++.+|+|+|++||||||+++.|++.++ +.+++.|.+.........+... ....... ..+....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~~~~ 83 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTRE------ERLRHLKRIAWIARLLAR 83 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHH------HHHHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChh------hHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999874 3567766653221110011100 0011111 1111223
Q ss_pred cCCe-EEcCCCCC---------CCCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--
Q 030477 77 QGGN-IVDYHGCD---------FFPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-- 143 (176)
Q Consensus 77 ~~~~-vid~~~~~---------~~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (176)
.+.+ ++|..... .+.. ..++.+|||++|++++.+|+..+.+.... .+. +..+.. ....|.
T Consensus 84 ~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~-~~~-----~~~~~~-~~~~y~~~ 156 (186)
T 2yvu_A 84 NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKAL-KGE-----LENFTG-ITDPYEPP 156 (186)
T ss_dssp TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHH-TTC-----CSSCHH-HHSCCCCC
T ss_pred CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHh-hcc-----hhhhhh-hhhcccCC
Confidence 3444 44642210 0100 02468999999999999997432100000 000 000111 123354
Q ss_pred --CCcEEEecCCCHHHHHHHHHHHHH
Q 030477 144 --EDIVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 144 --~~~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
.+.+|+++..+++++.+.|...++
T Consensus 157 ~~~~~~Id~~~~~~~ev~~~I~~~l~ 182 (186)
T 2yvu_A 157 ENPQLVLDTESNTIEHNVSYLYSLVK 182 (186)
T ss_dssp SSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 245555555689988888877764
No 79
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.51 E-value=8.6e-14 Score=100.32 Aligned_cols=159 Identities=17% Similarity=0.074 Sum_probs=75.0
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCC----eEee-h--------hHHHhhcccC-CCchhhhcccccc---hHH
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQL----RHIN-I--------GELVREKNLH-DGWDDELECHVIN---EDL 66 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~----~~~~-~--------~~~~~~~~~~-~~~~~~~~~~~~~---~~~ 66 (176)
+...++.+|+|.|++||||||+++.|++.++. .++. . ++.++..... ..+.......++. .+.
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~ 95 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREH 95 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 33457889999999999999999999998754 2222 1 1112111110 0121111111111 122
Q ss_pred HHHHHHHHhhcCCe-EEcCCC---------CCCCCC------------CcccEEEEEeCChHHHHHHHhhcCCCCccccc
Q 030477 67 VCDELEDIMEQGGN-IVDYHG---------CDFFPE------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN 124 (176)
Q Consensus 67 l~~~i~~~~~~~~~-vid~~~---------~~~~~~------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~ 124 (176)
+.+.+...+..+.+ |.|... ...++. ..||++|||++|++++.+|+ +|++ .+.
T Consensus 96 ~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rdr----~E~ 170 (223)
T 3ld9_A 96 FVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKNG----YEF 170 (223)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------------------
T ss_pred HHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccCc----ccc
Confidence 22324444444544 445210 000000 24899999999999999998 4432 221
Q ss_pred --hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 125 --NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
....+.....+......+.. .++.+|+. +++++ +.|..+++.+
T Consensus 171 ~~~e~~~rv~~~y~~la~~~~~-~~~vIDa~~sieeV-~~I~~~l~~~ 216 (223)
T 3ld9_A 171 ADMEFYYRVRDGFYDIAKKNPH-RCHVITDKSETYDI-DDINFVHLEV 216 (223)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTT-TEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CEEEEcCCCCHHHH-HHHHHHHHHH
Confidence 22234455555555555543 45555554 88888 8888877654
No 80
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.48 E-value=6.2e-13 Score=94.38 Aligned_cols=146 Identities=20% Similarity=0.133 Sum_probs=79.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcC-Ce
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQG-GN 80 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~~ 80 (176)
.++.+|+|+|++||||||+++.|+..+ |.. +++.+++.........+........+ ..+..........+ .+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v 100 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENI--RRVGEVAKLFADAGIIC 100 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHH--HHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHH--HHHHHHHHHHHhCCceE
Confidence 567899999999999999999999988 665 88877664322111111110000000 01111111122223 33
Q ss_pred EEcCCCC---------CCCCCCcccEEEEEeCChHHHHHHH------hhcCCCCccccchhHHHHHHHHHHHHHhcCC--
Q 030477 81 IVDYHGC---------DFFPERWFDRVVVLQTENSVLYDRL------TKRGYTGAKLTNNIECEIFQVLLEEAKESYP-- 143 (176)
Q Consensus 81 vid~~~~---------~~~~~~~~~~vi~l~~~~~~~~~R~------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (176)
+++.... ..+.. ....+|||++|++++.+|+ ..|........ .. ...|.
T Consensus 101 i~~~~~~~~~~r~~~~~~~~~-~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~-~~------------~~~~~~~ 166 (200)
T 3uie_A 101 IASLISPYRTDRDACRSLLPE-GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFT-GI------------DDPYEPP 166 (200)
T ss_dssp EEECCCCCHHHHHHHHHTSCT-TSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCB-TT------------TBCCCCC
T ss_pred EEecCCchHHHHHHHHHhcCC-CCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCC-CC------------CCcCcCC
Confidence 4332111 11111 1225699999999999996 33322111111 11 12233
Q ss_pred --CCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477 144 --EDIVLALKS-DTIEDITRNIAILTDW 168 (176)
Q Consensus 144 --~~~~i~~~~-~s~~ev~~~i~~~~~~ 168 (176)
++.++++++ .+++++.+.|...+..
T Consensus 167 ~~~~~~idt~~~~~~~e~v~~i~~~l~~ 194 (200)
T 3uie_A 167 LNCEISLGREGGTSPIEMAEKVVGYLDN 194 (200)
T ss_dssp SSCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 257788877 5999888888777654
No 81
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.46 E-value=1.5e-12 Score=90.70 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=29.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG 41 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~ 41 (176)
.++.+|+|+|++||||||+++.|++.+ |++++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 356789999999999999999999987 88877443
No 82
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.45 E-value=1.2e-12 Score=93.59 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=79.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC------CeEeehhHHHhhcccCCCch-hhhcccccchHHHHHHHHHHhhc-
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ------LRHINIGELVREKNLHDGWD-DELECHVINEDLVCDELEDIMEQ- 77 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~- 77 (176)
..++.+|+|+|++||||||+++.|++.++ +.+++.+.+.........+. ...... + ..+...+...+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~-~--~~~~~~~~~~l~~g 98 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN-I--RRIAEVAKLFADSN 98 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH-H--HHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHH-H--HHHHHHHHHHHHCC
Confidence 35678999999999999999999999876 77777555432211100111 000000 0 1122222233333
Q ss_pred CCeEEcCCCCC-----CC-----------CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc
Q 030477 78 GGNIVDYHGCD-----FF-----------PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES 141 (176)
Q Consensus 78 ~~~vid~~~~~-----~~-----------~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (176)
..+|+|+.... .+ ....++.+|||++|++++.+|+ .|. ... ... +.+..........
T Consensus 99 ~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r~----~~~-~~r-~~~~~~~~~~~~~ 171 (211)
T 1m7g_A 99 SIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PKG----LYK-KAR-EGVIKEFTGISAP 171 (211)
T ss_dssp CEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TTC----HHH-HHH-HTSSSSCBTTTBC
T ss_pred CEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hHH----HHH-HHH-hcchhhhhhhhhh
Confidence 34666743210 00 0012478999999999999994 111 000 000 0000000011123
Q ss_pred CC----CCcEEEecCCCHHHHHHHHHHHHHH
Q 030477 142 YP----EDIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 142 ~~----~~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
|. .+.+|+++..+++++.+.|...++.
T Consensus 172 y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 172 YEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp CCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 33 1455655555899998888877753
No 83
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.45 E-value=1.8e-13 Score=107.47 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcCCeEEcC
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQGGNIVDY 84 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~vid~ 84 (176)
..++.+|+|+|+|||||||+++.|++.+|+.+++.|++- .+ ..+...+...+ .+..+|+|.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------~~-----------~~~~~~~~~~l~~g~~vIiD~ 316 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------SW-----------QRCVSSCQAALRQGKRVVIDN 316 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------SH-----------HHHHHHHHHHHHTTCCEEEES
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------HH-----------HHHHHHHHHHHhcCCcEEEeC
Confidence 346789999999999999999999999999999988751 11 22333444433 456788886
Q ss_pred CCCCCCCC----------CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 85 HGCDFFPE----------RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 85 ~~~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
.......+ .....+|||++|.+++.+|+..|..
T Consensus 317 ~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 317 TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 53221100 1123689999999999999998864
No 84
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.44 E-value=2.4e-12 Score=90.29 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=78.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccchHH----------------------
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINEDL---------------------- 66 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 66 (176)
+.|+|+||+||||||+++.|.+++.. ..++.+...|.+...+.-+.++ ++.+.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY--~Fvs~~eF~~~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDY--NFVSVDEFKSMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTB--EECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCcee--EeecHHHHHHHHHcCCEEEEEEEcCceee
Confidence 56899999999999999999887743 4456666666665544433333 2222222
Q ss_pred -HHHHHHHHh-hcCCeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477 67 -VCDELEDIM-EQGGNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA 138 (176)
Q Consensus 67 -l~~~i~~~~-~~~~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 138 (176)
..+.+...+ .+..+++|... ...++. .+..++.+.+|.+++.+|+..|+...+ +.+ ..++.....+.
T Consensus 80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~-~~~~Ifi~pps~e~L~~RL~~Rg~e~~---e~i-~~Rl~~a~~e~ 154 (186)
T 1ex7_A 80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPEL-NARFLFIAPPSVEDLKKRLEGRGTETE---ESI-NKRLSAAQAEL 154 (186)
T ss_dssp EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGG-CCEEEEEECSCHHHHHHHHHHHCCSCH---HHH-HHHHHHHHHHH
T ss_pred eecceeeehhhCCCEEEecCCHHHHHHHHHhccc-CceEEEEeCCCHHHHHHHHHhcCCCCH---HHH-HHHHHHHHHHH
Confidence 233333333 33455665321 111211 122344445678999999999985321 112 12343333332
Q ss_pred HhcC-CC-CcEEEecCCCHHHHHHHHHHHH
Q 030477 139 KESY-PE-DIVLALKSDTIEDITRNIAILT 166 (176)
Q Consensus 139 ~~~~-~~-~~~i~~~~~s~~ev~~~i~~~~ 166 (176)
.... .. +.+| +| ++.++..+.+..++
T Consensus 155 ~~~~~~~fD~vI-vN-ddle~a~~~l~~iI 182 (186)
T 1ex7_A 155 AYAETGAHDKVI-VN-DDLDKAYKELKDFI 182 (186)
T ss_dssp HHHTTTCSSEEE-EC-SSHHHHHHHHHHHH
T ss_pred hhccccCCcEEE-EC-cCHHHHHHHHHHHH
Confidence 2222 12 3333 44 35666666666554
No 85
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.44 E-value=1.9e-13 Score=101.06 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=45.6
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh------cC---CCCcEEEecCC-CHHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE------SY---PEDIVLALKSD-TIEDITRNIA 163 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~i~~~~~-s~~ev~~~i~ 163 (176)
.++.+|||++|++++.+|+.+|++...........+.+...++...+ .| ....++.+|+. +++++.+.|.
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I~ 253 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLV 253 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHHH
Confidence 36899999999999999999887532221112222334444443321 22 12335555554 8998888887
Q ss_pred HHHHH
Q 030477 164 ILTDW 168 (176)
Q Consensus 164 ~~~~~ 168 (176)
..++.
T Consensus 254 ~~l~~ 258 (263)
T 1p5z_B 254 EKVKE 258 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 86
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.44 E-value=5.6e-13 Score=108.72 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh-HHHhhcccC-CCchh-hhcccccchHHHHHHHHHHhhcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG-ELVREKNLH-DGWDD-ELECHVINEDLVCDELEDIMEQGGN 80 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~ 80 (176)
.++.+|+|+|+|||||||+++.|++.+ |++++++| +.++..... ..+.. .....+ ..+...++.....+.+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~---r~i~eva~~~l~~G~i 126 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV---RRIAEVAKLFADAGLV 126 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH---HHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH---HHHHHHHHHHHhCCCE
Confidence 367899999999999999999999998 88887764 444432111 11111 110000 1122222222233333
Q ss_pred EE-cCCCCC---------CCCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC----CC
Q 030477 81 IV-DYHGCD---------FFPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP----ED 145 (176)
Q Consensus 81 vi-d~~~~~---------~~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 145 (176)
|+ +..... .+.. ..+..+|||++|++++.+|+.++.+...+.. . .. .+......|. ++
T Consensus 127 VI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~-~-----~~-~~~~~~~~Ye~p~~~d 199 (630)
T 1x6v_B 127 CITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG-E-----IK-GFTGIDSEYEKPEAPE 199 (630)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC-----------CBTTTBCCCCCSSCS
T ss_pred EEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh-h-----HH-HHHHhhhhhcccCCCc
Confidence 33 421100 0000 1235799999999999999763221100000 0 00 0111234454 24
Q ss_pred cEEEecCCCHHHHHHHHHHHHH
Q 030477 146 IVLALKSDTIEDITRNIAILTD 167 (176)
Q Consensus 146 ~~i~~~~~s~~ev~~~i~~~~~ 167 (176)
.+|+++..+++++.+.|...+.
T Consensus 200 lvIDts~~s~eevv~~Il~~L~ 221 (630)
T 1x6v_B 200 LVLKTDSCDVNDCVQQVVELLQ 221 (630)
T ss_dssp EEEETTSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 5666665689888887777664
No 87
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.43 E-value=5.7e-13 Score=96.64 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=37.8
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC--CC-CcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY--PE-DIVLALKSD-TIEDITRNIAILTDWV 169 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~~~-s~~ev~~~i~~~~~~~ 169 (176)
.+|++|||++|++++.+|+.+|++..+........+++...+......| .. ..++.+|+. +++++.+.|..+++.+
T Consensus 146 ~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~ 225 (230)
T 2vp4_A 146 QADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSI 225 (230)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC----------------
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999988753222111122345566666655444 22 445556655 8999999888877643
No 88
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.42 E-value=2e-11 Score=91.31 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCC----Cchhhhccc--ccchHHHHHHHHHHh-hc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHD----GWDDELECH--VINEDLVCDELEDIM-EQ 77 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~l~~~i~~~~-~~ 77 (176)
.++.+|+|+|||||||||+++.|++++ ++.+++.|.+......+. .++.....+ .+........++..+ .+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g 110 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQG 110 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 457799999999999999999999988 788899766543221110 011100000 000111223333334 45
Q ss_pred CCeEEcCCCCCCC---------CCC-cccEEEEEeCChHHH----HHHHhhc
Q 030477 78 GGNIVDYHGCDFF---------PER-WFDRVVVLQTENSVL----YDRLTKR 115 (176)
Q Consensus 78 ~~~vid~~~~~~~---------~~~-~~~~vi~l~~~~~~~----~~R~~~r 115 (176)
.++|+|....... ... ....++++.+|++++ .+|+..|
T Consensus 111 ~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 111 YNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp CCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 6789986543221 111 122478899999999 8888655
No 89
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.39 E-value=4.6e-13 Score=100.63 Aligned_cols=106 Identities=25% Similarity=0.315 Sum_probs=65.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchhhhcccccc-h----HHHHHHHHHHh----hcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDDELECHVIN-E----DLVCDELEDIM----EQGG 79 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~l~~~i~~~~----~~~~ 79 (176)
.+|+|+|+|||||||+++.|++++ |+.+++.|.+......... +.. ..+... + ..+.+.+...+ .+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence 589999999999999999999985 9999999865433221000 000 011111 1 22333444444 3356
Q ss_pred eEEcCCCCCC-----CC----C-CcccEEEEEeCChHHHHHHHhhcCC
Q 030477 80 NIVDYHGCDF-----FP----E-RWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 80 ~vid~~~~~~-----~~----~-~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
+|+|...... +. . .....+|||++|++++.+|+.+|+.
T Consensus 81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp EEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 8888644221 11 0 1123799999999999999998863
No 90
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.36 E-value=3.7e-12 Score=92.90 Aligned_cols=80 Identities=18% Similarity=0.047 Sum_probs=51.0
Q ss_pred cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc---------CCCCcEEEecCC-CHHHHHHHHH
Q 030477 94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES---------YPEDIVLALKSD-TIEDITRNIA 163 (176)
Q Consensus 94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~-s~~ev~~~i~ 163 (176)
.++.+|||++|++++.+|+.+|++..+........+.+...+...... |....++.+++. +++++.+.+.
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~ 228 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQE 228 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHH
Confidence 378999999999999999998876433211112223344444433221 233455666654 7888888888
Q ss_pred HHHHHHHhhc
Q 030477 164 ILTDWVRNWQ 173 (176)
Q Consensus 164 ~~~~~~~~~~ 173 (176)
.+++.+..+.
T Consensus 229 ~i~~~i~~~l 238 (241)
T 2ocp_A 229 DLMREVNTFV 238 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888876653
No 91
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.36 E-value=5.4e-13 Score=107.82 Aligned_cols=150 Identities=17% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcCCeE
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQGGNI 81 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~v 81 (176)
++.+|+|+|++||||||+++.|++.++ +.+++.|.+.+.......+...-....+ ..+...+.... .++++|
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l--~~i~~~~~~~l~~G~~VI 448 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNI--LRVGFVASEIVKHNGVVI 448 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHH--HHHHHHHHHHHHTTCEEE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHH--HHHHHHHHHHHhCCCEEE
Confidence 457899999999999999999999886 3778866654332111111110000000 11222333333 345677
Q ss_pred EcCCC---------CCCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC----CCcE
Q 030477 82 VDYHG---------CDFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP----EDIV 147 (176)
Q Consensus 82 id~~~---------~~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 147 (176)
+|... ...+.. .+ .+|||++|++++.+|+.++.+. . .. ...+..+...+ ..|. .+.+
T Consensus 449 ~d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl~r~~~~----~-~~-~~~i~~~~~vr-~~~e~~~~adiv 519 (546)
T 2gks_A 449 CALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERDVKGLYK----K-AK-EGLIKGFTGVD-DPYEPPVAPEVR 519 (546)
T ss_dssp EECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHCCSSHHH----H-C-------CCBTTT-BCCCCCSSCSEE
T ss_pred EEcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHhhccccc----c-cc-HHHHHHHHhhh-hccccccCCcEE
Confidence 78422 122322 35 7999999999999997521110 0 00 00111111111 1222 2455
Q ss_pred EEecCCCHHHHHHHHHHHHHH
Q 030477 148 LALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 148 i~~~~~s~~ev~~~i~~~~~~ 168 (176)
|++++.+++++.+.|...++.
T Consensus 520 IDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 520 VDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp EETTTSCHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHH
Confidence 665556899998888887754
No 92
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.35 E-value=2.4e-11 Score=86.09 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.5
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.|.++.+|+|+||+||||||+++.|+..+....++
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~ 37 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALAEIKIS 37 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEEC
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEe
Confidence 35678899999999999999999999876533343
No 93
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.35 E-value=9.9e-12 Score=87.22 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=83.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCe--EeehhHHHhhcccCC--Cc-hhhhcccccchHHHHHHHHH----Hhh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLR--HINIGELVREKNLHD--GW-DDELECHVINEDLVCDELED----IME 76 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~i~~----~~~ 76 (176)
+.++.+|+|+||+||||||+++.|+..++.. +++.+++........ .+ .+... ....+.+.+.. ...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999876544 677777654322111 11 00000 01112222211 122
Q ss_pred c-CCeEEcCCCCC-C---CCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEE
Q 030477 77 Q-GGNIVDYHGCD-F---FPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLA 149 (176)
Q Consensus 77 ~-~~~vid~~~~~-~---~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~ 149 (176)
. ..+++|..... . +.. .....++++.++.+++.+|+..|+. +...+ . +....+.+...+.+.. ..+++
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~--~~lld-~--~~~~~~~~~~~~l~~~~~~~i~ 156 (191)
T 1zp6_A 82 EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGG--DSLSD-P--LVVADLHSQFADLGAFEHHVLP 156 (191)
T ss_dssp TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCT--TSCCC-H--HHHHHHHHHTTCCGGGGGGEEE
T ss_pred cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCC--CccCC-H--HHHHHHHHHHhccCcccccEEE
Confidence 2 33566642111 1 110 1122578999999999999998753 22221 1 2333344433333322 35666
Q ss_pred ecCCCHHHHHHHHHHHHH
Q 030477 150 LKSDTIEDITRNIAILTD 167 (176)
Q Consensus 150 ~~~~s~~ev~~~i~~~~~ 167 (176)
+++.+++++.+.+..++.
T Consensus 157 t~~~~~~~~~~~i~~~l~ 174 (191)
T 1zp6_A 157 VSGKDTDQALQSAINALQ 174 (191)
T ss_dssp CTTCCTTTTTTTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 665678877777766654
No 94
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=2.4e-12 Score=91.94 Aligned_cols=155 Identities=13% Similarity=0.117 Sum_probs=72.0
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccch-------------------
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINE------------------- 64 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 64 (176)
++.++.+|+|+||+||||||+++.|++.++. .....+...+.+......+..+ .+.+.
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y--~~~~~~~f~~~~~~~~~le~~~~~ 81 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDY--YFRSREVFEQAIKDGKMLEYAEYV 81 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTB--EECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCcee--EEecHHHHHHHHhcCcEEEEEEEc
Confidence 3467889999999999999999999998743 2333222222221111101000 00000
Q ss_pred ----HHHHHHHHHHh-hcCCeEEcCCC--CCCCCCCcc-cEEEEEeC-ChHHHHHHHhhcCCCCccccchhHHHHHHHHH
Q 030477 65 ----DLVCDELEDIM-EQGGNIVDYHG--CDFFPERWF-DRVVVLQT-ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLL 135 (176)
Q Consensus 65 ----~~l~~~i~~~~-~~~~~vid~~~--~~~~~~~~~-~~vi~l~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~ 135 (176)
......++..+ .+..+++|... ...+....+ ..+||+.+ +++++.+|+.+|+...+ +.. ..++....
T Consensus 82 ~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~---e~i-~~Rl~~~~ 157 (208)
T 3tau_A 82 GNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESM---EVV-EERMETAK 157 (208)
T ss_dssp TEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CC---HHH-HHHHHHHH
T ss_pred cccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCH---HHH-HHHHHHHH
Confidence 01122334444 34566765311 001111112 24566665 48999999998874211 111 12333333
Q ss_pred HHHHhcCCC-CcEEEecCCCHHHHHHHHHHHHHH
Q 030477 136 EEAKESYPE-DIVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 136 ~~~~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
.+.. .+.. +.++ +|+ +.+++.+.+..++..
T Consensus 158 ~e~~-~~~~~d~vi-vN~-~~~~~~~~l~~~i~~ 188 (208)
T 3tau_A 158 KEIE-MMASYDYAV-VND-VVANAVQKIKGIVET 188 (208)
T ss_dssp HHHH-HGGGSSEEE-ECS-SHHHHHHHHHHHHHH
T ss_pred HHHH-hhccCCEEE-ECc-CHHHHHHHHHHHHHH
Confidence 2221 1222 3333 443 688888888877754
No 95
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.34 E-value=1.1e-12 Score=96.44 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=32.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELV 44 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~ 44 (176)
++|+|+||+||||||+|+.|++++++.+++.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 58999999999999999999999999999998865
No 96
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.32 E-value=5.3e-12 Score=92.78 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=63.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehhHHHhhcc----cCCCchhhhcccccc-hHHH-HHHHHHHhhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIGELVREKN----LHDGWDDELECHVIN-EDLV-CDELEDIMEQ 77 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~l-~~~i~~~~~~ 77 (176)
..++.+|+|+|+|||||||+++.|++.++ +.+++.|.+..... +....+.....+.-. ...+ ...+..++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL 108 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhc
Confidence 44677999999999999999999999986 56677665532211 111111111101000 1112 2223333433
Q ss_pred -CCeEEcCCCCCCC---------CCCc-ccEEEEEeCChHHHHHHHhhc
Q 030477 78 -GGNIVDYHGCDFF---------PERW-FDRVVVLQTENSVLYDRLTKR 115 (176)
Q Consensus 78 -~~~vid~~~~~~~---------~~~~-~~~vi~l~~~~~~~~~R~~~r 115 (176)
.++|+|....... .... .-.++|+.+|++++.+|+..|
T Consensus 109 g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 109 GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 4889986433211 1111 223578899999999999876
No 97
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.28 E-value=1.1e-11 Score=92.83 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR 45 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~ 45 (176)
++.+|.|+|++||||||+++.|++.+| +.+++.|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 78999999875
No 98
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.28 E-value=6.1e-12 Score=102.22 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC----C--eEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCC-
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ----L--RHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGG- 79 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~- 79 (176)
.++.+|+|+|+|||||||+|+.|+++++ . .+++.|.+.+.......+...-....+ ..+...++.+...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i--~ri~~v~~~~~~~g~~ 471 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNI--QRIAFVATELTRAGAA 471 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHH--HHHHHHHHHHHHTTCE
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHH--HHHHHHHHHHHhCCCE
Confidence 3567899999999999999999999976 3 456655543321111111110000000 011122223333344
Q ss_pred eEEcCCCC---------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC---CCcE
Q 030477 80 NIVDYHGC---------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP---EDIV 147 (176)
Q Consensus 80 ~vid~~~~---------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 147 (176)
+|.+.... +.+.......+|||++|++++.+|..++ ...... ...+..+...+.+.+. .+.+
T Consensus 472 VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~-----l~~~~~-~~~i~~~~~~r~~~~~p~~~dl~ 545 (573)
T 1m8p_A 472 VIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG-----IYAAAR-RGEIKGFTGVDDPYETPEKADLV 545 (573)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC-----HHHHHH-TTSSSSCBTTTBCCCCCSSCSEE
T ss_pred EEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc-----chhhhh-HHHHHHHHhccccccccCCCCEE
Confidence 44452221 0011111237899999999999995321 110000 0001111111222222 2455
Q ss_pred EEecCCCHHHHHHHHHHHHHH
Q 030477 148 LALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 148 i~~~~~s~~ev~~~i~~~~~~ 168 (176)
|+++..+++++.+.|...+..
T Consensus 546 IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 546 VDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp ECTTTSCHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHh
Confidence 555555899888888777753
No 99
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.27 E-value=1.4e-10 Score=81.34 Aligned_cols=105 Identities=19% Similarity=0.066 Sum_probs=59.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccchHHHHHH----HHHHh-hcCCeEEc
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINEDLVCDE----LEDIM-EQGGNIVD 83 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----i~~~~-~~~~~vid 83 (176)
.+++|+||+||||||+++.|+..++. .+++.+++....... ...+.. .......+.+. ..... .+..+++|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ild 79 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGG-YRPPWE--SDELLALTWKNITDLTVNFLLAQNDVVLD 79 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTT-CCCGGG--CHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccc-cccCcc--chhHHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 57899999999999999999988765 788877765432111 111100 00011111121 22222 22356777
Q ss_pred CCCCCC-------C----CCCcccEEEEEeCChHHHHHHHhhcCC
Q 030477 84 YHGCDF-------F----PERWFDRVVVLQTENSVLYDRLTKRGY 117 (176)
Q Consensus 84 ~~~~~~-------~----~~~~~~~vi~l~~~~~~~~~R~~~r~~ 117 (176)
...... + -......+++|.+|++++.+|...|..
T Consensus 80 ~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred eccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence 521100 0 000122468899999999999988764
No 100
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=87.30 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHHhhc-ccC--CCchhhhcccccch------HHHHHHHHH-
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELVREK-NLH--DGWDDELECHVINE------DLVCDELED- 73 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~------~~l~~~i~~- 73 (176)
.++.+|+|+|.|||||+|+++.|.+.+| ++++++++.++.. ... ..+.......-+.+ ..+.+.++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 4667889999999999999999988784 7889999988742 110 01111000000100 111122211
Q ss_pred -------H-h---hcCCeEEcC----CCCCCCCCCcc--cEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHH
Q 030477 74 -------I-M---EQGGNIVDY----HGCDFFPERWF--DRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE 136 (176)
Q Consensus 74 -------~-~---~~~~~vid~----~~~~~~~~~~~--~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~ 136 (176)
. . ....+||+. +..+.|....+ -.+|.+.++++++.+|. +......++.+. +
T Consensus 89 d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg----~~~~~~~Dd~es-------E 157 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG----WVFTPGVDDAES-------E 157 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT----CCCCTTTTTSHH-------H
T ss_pred CchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh----hhcccccccccc-------c
Confidence 1 1 112356652 11223332222 24699999999999983 321221212211 1
Q ss_pred HHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477 137 EAKESYPEDIVLALKSDTIEDITRNIAILTDWVRN 171 (176)
Q Consensus 137 ~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~ 171 (176)
.-...+....++.+|+++.+++.+.+..++..+..
T Consensus 158 ~gL~~~~~~D~vI~Ndgt~eel~~~v~~ll~~~~~ 192 (202)
T 3ch4_B 158 CGLDNFGDFDWVIENHGVEQRLEEQLENLIEFIRS 192 (202)
T ss_dssp HTTTTCCCCSEEEEECSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 11223322334456667999999999999987754
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.22 E-value=1.5e-11 Score=87.24 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.+|+|+||+||||||+++.|+..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4577899999999999999999998876
No 102
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.19 E-value=3.7e-11 Score=97.10 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC------CeEeehhHHHhhcccCCCchh-hhcccccchHHHHHHHHHHhhcC
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ------LRHINIGELVREKNLHDGWDD-ELECHVINEDLVCDELEDIMEQG 78 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~ 78 (176)
..++.+|+|+|++||||||+++.|+..++ +.+++.+++.........+.. +....+ ..+....+.+...+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~---r~i~~v~q~l~~~~ 442 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNV---RRIGFVASEITKNR 442 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHH---HHHHHHHHHHHHTT
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHH---HHHHHHHHHHHhcC
Confidence 34678999999999999999999999873 446887776543211111111 110000 01111111222234
Q ss_pred CeEEcCCCC----------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC---CC
Q 030477 79 GNIVDYHGC----------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP---ED 145 (176)
Q Consensus 79 ~~vid~~~~----------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 145 (176)
.+++..... +.+.....-.+|||++|.+++.+|..+..+.. .....+..++..+.+.|. .+
T Consensus 443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~------~~~~~i~~l~~~r~~~e~P~~ad 516 (552)
T 3cr8_A 443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAK------ARAGLIPEFTGVSDPYEVPETPE 516 (552)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------CCCCCCSSCS
T ss_pred CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcccccccc------ccHhHHHHHHhccccccCCCCCC
Confidence 444421110 01111111268999999999999975222211 111124445555555553 25
Q ss_pred cEEEecCCCHHHHHHHHHHHHHH
Q 030477 146 IVLALKSDTIEDITRNIAILTDW 168 (176)
Q Consensus 146 ~~i~~~~~s~~ev~~~i~~~~~~ 168 (176)
.+++++..+++++.+.|...+..
T Consensus 517 l~Idt~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 517 LAIDTTGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHh
Confidence 66666666888887777766643
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.17 E-value=2.7e-10 Score=81.16 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehhHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIGELVR 45 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~~~~~ 45 (176)
..++.+|.|+|++||||||+++.|+..++ +.+++.|.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 34667899999999999999999999888 88888776543
No 104
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.14 E-value=1.9e-10 Score=87.36 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=33.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
++++|+|+||+||||||++..||++++..+++.|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 446899999999999999999999999999998876
No 105
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.14 E-value=7.1e-10 Score=78.98 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=29.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGEL 43 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~ 43 (176)
.++.+|.|.||+||||||+++.|+..+. ..++..+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4567999999999999999999998774 456666554
No 106
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.12 E-value=1.1e-10 Score=81.79 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+++|+||+||||||+++.|+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999998765
No 107
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.12 E-value=4.8e-10 Score=90.22 Aligned_cols=40 Identities=35% Similarity=0.484 Sum_probs=32.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCC-----eEeehhHHHhhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQL-----RHINIGELVREK 47 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~-----~~~~~~~~~~~~ 47 (176)
.+.+|+++|+|||||||+|+.|++.+++ .+|+.|++.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 4568999999999999999999998843 347878876554
No 108
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.09 E-value=7.8e-12 Score=89.25 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
++|+|+|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998853
No 109
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.05 E-value=1.1e-09 Score=79.95 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=26.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
.++.+|.|+||+||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 466789999999999999999999988865
No 110
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.04 E-value=3.4e-10 Score=80.25 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=50.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcc----cCCCchhhhcccccchHHHHHHH-HHH-
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKN----LHDGWDDELECHVINEDLVCDEL-EDI- 74 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~i-~~~- 74 (176)
+.++.+|.|+|++||||||+++.|+..+ |.. +++.|.+..... .....+..+....++...+.+.+ ...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 3466799999999999999999999865 443 345455433211 11111111101112223333322 100
Q ss_pred -----------------------hhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcC
Q 030477 75 -----------------------MEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 75 -----------------------~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
... ..+|+|..... .+ ...++.+||+++|++++.+|+.+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~-~~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEW-RPFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTT-GGGCSEEEEECCC------------
T ss_pred cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHH-HhhcCEEEEEeCCHHHHHHHHhcCC
Confidence 011 23556643311 11 1236789999999999999999887
No 111
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.01 E-value=8.8e-10 Score=79.68 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=18.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHH-Hhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALA-EST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La-~~l 33 (176)
.++.+|+|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467899999999999999999998 654
No 112
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.4e-09 Score=85.36 Aligned_cols=37 Identities=32% Similarity=0.438 Sum_probs=32.9
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++|+++|.++|++++..
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3566789999999999999999999999999988754
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.00 E-value=1.2e-09 Score=76.15 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
++.+++|+||+||||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567999999999999999999988653
No 114
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.97 E-value=5.7e-09 Score=79.03 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHHhhc------ccCCCchhhhcccccchHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELVREK------NLHDGWDDELECHVINEDLVCDELED 73 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~i~~ 73 (176)
.++.+|.|+||+||||||+++.|+..++ ..+++.|.+.... .....++. ...++.+.+.+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~---P~~~D~~~l~~~L~~ 166 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGF---PESYDMPSLLRVLNA 166 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTS---GGGBCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccC---cccccHHHHHHHHHh
Confidence 3566899999999999999999988764 4456766643211 01111110 112344555555554
Q ss_pred HhhcC-C--------------------------eEEcCCCCCCC------------CCCcccEEEEEeCChHHHHHHHhh
Q 030477 74 IMEQG-G--------------------------NIVDYHGCDFF------------PERWFDRVVVLQTENSVLYDRLTK 114 (176)
Q Consensus 74 ~~~~~-~--------------------------~vid~~~~~~~------------~~~~~~~vi~l~~~~~~~~~R~~~ 114 (176)
+..+. . +|++....-.. -...+|.+||+++|.+++.+|+..
T Consensus 167 L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~ 246 (321)
T 3tqc_A 167 IKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYID 246 (321)
T ss_dssp HHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHH
T ss_pred hhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHH
Confidence 43322 1 12232111000 112468999999999999999988
Q ss_pred cC
Q 030477 115 RG 116 (176)
Q Consensus 115 r~ 116 (176)
|+
T Consensus 247 Rd 248 (321)
T 3tqc_A 247 RV 248 (321)
T ss_dssp HH
T ss_pred hc
Confidence 85
No 115
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.97 E-value=9.8e-10 Score=85.74 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=32.8
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++|+++|.+++++++..
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 4556789999999999999999999999999988754
No 116
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.4e-09 Score=84.13 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=32.9
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++|+++|.++|++++..
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3567789999999999999999999999999988744
No 117
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.3e-09 Score=84.60 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=33.1
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++|+++|.++|++++..
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 4567789999999999999999999999999998754
No 118
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.95 E-value=2.3e-09 Score=75.71 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.2
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
++..++.+|+|+||+||||||+++.|.+.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445788999999999999999999998765
No 119
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.89 E-value=4.3e-09 Score=79.99 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
.++++|+|.|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45689999999999999999999998853
No 120
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.88 E-value=3.5e-08 Score=74.38 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGEL 43 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~ 43 (176)
.++.+|.|+|++||||||+++.|+..++ +.+++.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5667999999999999999999998765 556676654
No 121
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.87 E-value=6e-09 Score=81.73 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=32.9
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++|+++|..+|++++..
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3567788999999999999999999999999988754
No 122
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.8e-09 Score=83.88 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=33.1
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++|+++|.+++++++..
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 4567889999999999999999999999999998754
No 123
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.82 E-value=1.6e-09 Score=82.44 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=32.9
Q ss_pred CCccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 1 MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 1 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
|+.|.| +++|+|+||+||||||+++.|++.++..+++.|++
T Consensus 1 ~~~m~m--~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 1 MTEMTK--PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp -----C--CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CCCCCC--CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 444443 25899999999999999999999999999999987
No 124
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.81 E-value=2.8e-08 Score=83.35 Aligned_cols=37 Identities=35% Similarity=0.415 Sum_probs=32.8
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++++++|.++|.+++..
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 4556789999999999999999999999999988754
No 125
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.78 E-value=1.9e-08 Score=80.50 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC-------eEeehhH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL-------RHINIGE 42 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~-------~~~~~~~ 42 (176)
.++..|+|+|++||||||++++|+++|+. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35678999999999999999999999986 5777665
No 126
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.78 E-value=7.4e-08 Score=76.64 Aligned_cols=39 Identities=31% Similarity=0.484 Sum_probs=30.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVRE 46 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~ 46 (176)
++.+|+++|+|||||||+++.|++.++ ...++.+++...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 456899999999999999999999875 345566665444
No 127
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.78 E-value=3.9e-09 Score=79.80 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=32.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELV 44 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~ 44 (176)
++|+|+||+||||||+++.|+++++..+++.|.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 48999999999999999999999999999998763
No 128
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.71 E-value=3.1e-07 Score=65.91 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=25.0
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
.-|.++.+++|+||+||||||+.+.|+..+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4467889999999999999999999988764
No 129
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.69 E-value=9.8e-09 Score=77.00 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=32.6
Q ss_pred CCccCC-CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 1 MAQDSK-RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 1 ~~~~~~-~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
|+++.. ..+++|+|+||+||||||++..|+++++..+++.|..
T Consensus 1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 1 MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp ------CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCccccCCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 455332 2356889999999999999999999999999988763
No 130
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.67 E-value=4.1e-08 Score=74.74 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=27.4
Q ss_pred ccCCCCCCeEEEECCCCCChHHHH-HHHHHhcCC
Q 030477 3 QDSKRSRPNILVTGTPGTGKTTTS-TALAESTQL 35 (176)
Q Consensus 3 ~~~~~~~~~I~l~G~~GsGKSTla-~~La~~l~~ 35 (176)
++.+.++.+|+|.|+.||||||++ +.|++.++.
T Consensus 6 ~~~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 6 TDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp --CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred ccccCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 344567789999999999999999 999998754
No 131
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.64 E-value=1.8e-08 Score=75.69 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=33.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
++++|+|+||+||||||++..|+++++..+++.|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 467899999999999999999999999999998875
No 132
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.63 E-value=1.4e-06 Score=61.47 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=22.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
|.++..++|.||+||||||+.+.|...+
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4467899999999999999999998754
No 133
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.60 E-value=2.4e-08 Score=75.75 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=22.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
.+..+|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999998774
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.60 E-value=3.2e-08 Score=74.10 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=29.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
...+..++|+||||+|||++|+.+|+.+|.+++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4556788999999999999999999999877653
No 135
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.59 E-value=6.1e-08 Score=81.35 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=32.8
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+...++.|+|+||||||||++|+++|.+++.+++..
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 4556778899999999999999999999999998754
No 136
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.58 E-value=3.9e-08 Score=75.68 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
+.+..+|+|.|+.||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34667899999999999999999999874
No 137
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.54 E-value=3.2e-07 Score=69.24 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.+|.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567899999999999999999998865
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=69.44 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=29.8
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
+...+..++|+||||+||||+++.+++.++.+++.
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34567789999999999999999999999877753
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.46 E-value=1.5e-07 Score=68.85 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=28.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
..++.++|+|||||||||+++.|+..++.+++..
T Consensus 43 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3466799999999999999999999998776543
No 140
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.45 E-value=1.3e-07 Score=68.76 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=32.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~ 46 (176)
++|.|+|++||||||+++.|.+.+|++++..++.++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHH
Confidence 5899999999999999999988899999988776544
No 141
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.45 E-value=1.8e-07 Score=70.19 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=30.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
...+..|+|+|||||||||++++|+..++.+++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 45678899999999999999999999998877644
No 142
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.43 E-value=1.3e-06 Score=65.32 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~ 39 (176)
.+.+|+|.|..||||||+.+.|.+.+ |+.++.
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~ 119 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVA 119 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEE
Confidence 56799999999999999999999988 454554
No 143
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.41 E-value=2.6e-07 Score=68.53 Aligned_cols=34 Identities=38% Similarity=0.516 Sum_probs=30.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
...+..++|+||||+||||+++.++..++.+++.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4567789999999999999999999999888764
No 144
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.37 E-value=1.8e-07 Score=72.56 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=31.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
+++|+|+||+||||||++..|++.++..+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4689999999999999999999999999999876
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.37 E-value=3.4e-07 Score=68.26 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=28.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.+..++|+|||||||||+++.++..++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 46789999999999999999999999887754
No 146
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.36 E-value=4.2e-07 Score=68.80 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=29.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
..+..|+|+||||+|||+++++++..++.+++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3467899999999999999999999998887643
No 147
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.35 E-value=5.8e-07 Score=60.58 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~ 43 (176)
+...++|.|++||||||+++.++..+ | ..+++..++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 56789999999999999999999876 6 445555443
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.34 E-value=5.2e-07 Score=66.90 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
...++.++|.|||||||||+++.|+..++..++.
T Consensus 41 l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 41 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp CCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 3445569999999999999999999988766553
No 149
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.33 E-value=3.8e-07 Score=71.83 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=31.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
.+..|+|+||||+||||+++.||+.++.+++..+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 45789999999999999999999999999886553
No 150
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.32 E-value=4e-07 Score=69.97 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=29.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+..|+|+||||||||++|+.|++.++.+++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 457899999999999999999999999888754
No 151
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.31 E-value=6e-07 Score=68.04 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=28.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc-CCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST-QLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~ 39 (176)
..++.|+|+||||+|||+++++++..+ +.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 345789999999999999999999998 766653
No 152
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.30 E-value=7e-07 Score=61.76 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc----C--CeEeehhHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST----Q--LRHINIGELVR 45 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l----~--~~~~~~~~~~~ 45 (176)
.++..++|+||+||||||+++.++..+ | ..+++..++..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 356889999999999999999998876 3 34556555543
No 153
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.29 E-value=1.8e-06 Score=61.89 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=30.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR 45 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~ 45 (176)
++..++|+||||+||||+++.+++.++ +.+++.+++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 567899999999999999999998763 34566665543
No 154
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=7.1e-07 Score=68.51 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=29.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
..+..|+|+||||+|||++|++++..++.+++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3456799999999999999999999999887643
No 155
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.27 E-value=4.4e-07 Score=66.95 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=29.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
..+..++|+||||+|||++|+.+++.++.+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4567899999999999999999999998887643
No 156
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.26 E-value=2.5e-07 Score=68.05 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=28.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
..+..++|+||||+||||+++.++..++.+++..
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3456689999999999999999999998776543
No 157
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.26 E-value=6.7e-07 Score=62.91 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=29.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
.+..|+|+||+||||||++..|+++.+ .+++.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 456899999999999999999999866 78875543
No 158
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.24 E-value=8.8e-07 Score=66.16 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=28.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.+..++|+||||+|||++++.+++.++.+++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 46789999999999999999999999876653
No 159
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.23 E-value=8.9e-07 Score=68.34 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=28.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
....++|+||||+||||+|+.|++.++.+++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 456799999999999999999999998877654
No 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.22 E-value=1.1e-06 Score=69.82 Aligned_cols=34 Identities=38% Similarity=0.592 Sum_probs=29.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
..++.|+|+|||||||||++++++..++.+++..
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 3456799999999999999999999999887644
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=1.3e-06 Score=60.22 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..++|+|++|+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999986
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.22 E-value=1.1e-06 Score=67.42 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=29.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
..+..|+|+||||+||||++++++..++.+++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 356789999999999999999999999988764
No 163
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.21 E-value=1.1e-06 Score=69.54 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=28.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeeh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINI 40 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~ 40 (176)
..+..++|+||||+|||++|+++++.+| ++++..
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 3457899999999999999999999998 666543
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.21 E-value=1.4e-06 Score=63.59 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=26.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
++.++|.|||||||||+++.++..++..++.
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4559999999999999999999987655543
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.19 E-value=1.1e-06 Score=60.46 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|+|++|+||||+++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999986
No 166
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.19 E-value=6e-05 Score=56.36 Aligned_cols=149 Identities=11% Similarity=0.143 Sum_probs=75.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-CeEeehhHHHhhcccCCCchhhhccccc-chHH-----------------
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVREKNLHDGWDDELECHVI-NEDL----------------- 66 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------------- 66 (176)
+..+++|+|+|| ||+|+.+.|.+.+. ...++.....|.+...+.-+.++. +. +.+.
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~--Fv~s~eef~~~i~~g~flE~~~~~ 176 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH--FVSSREKMEKDIQAHKFIEAGQYN 176 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBE--ECSCHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeE--ecCCHHHHHHHHHCCCcEEEEEEc
Confidence 456788999998 79999999988764 233454555555544433333322 22 2222
Q ss_pred ------HHHHHHHHhh-cCCeEEcCCCCCC--CC-CCcccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHH
Q 030477 67 ------VCDELEDIME-QGGNIVDYHGCDF--FP-ERWFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLL 135 (176)
Q Consensus 67 ------l~~~i~~~~~-~~~~vid~~~~~~--~~-~~~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~ 135 (176)
-.+.+++.+. +..+|+|...... +. ....-.+||+.+| .+++.+ +.+|+.. +.. ..++....
T Consensus 177 g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~t~-----~~i-~~rl~~a~ 249 (295)
T 1kjw_A 177 SHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRITE-----EQA-RKAFDRAT 249 (295)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTSCH-----HHH-HHHHHHHH
T ss_pred CcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcCCH-----HHH-HHHHHHHH
Confidence 2233444443 3456776432110 11 0111268888866 566665 7666521 111 22333332
Q ss_pred HHHHhcCCC--CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 136 EEAKESYPE--DIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 136 ~~~~~~~~~--~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
.. +..+.. +.+ .+ +++.++..+.+..++...
T Consensus 250 ~~-e~~~~~~fd~v-iv-Nd~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 250 KL-EQEFTECFSAI-VE-GDSFEEIYHKVKRVIEDL 282 (295)
T ss_dssp HH-HHHHGGGCSEE-EC-CSSHHHHHHHHHHHHHHH
T ss_pred HH-HHhccccCeEE-EE-CcCHHHHHHHHHHHHHhc
Confidence 11 111221 333 33 347877777777777543
No 167
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.18 E-value=1.4e-06 Score=65.11 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEe-ehhHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHI-NIGELV 44 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~-~~~~~~ 44 (176)
..++.+|.|+|++||||||+++.|+..++ ...+ +.|+++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 34677899999999999999999988774 3445 777653
No 168
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.17 E-value=2.8e-07 Score=70.43 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=26.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRH 37 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~ 37 (176)
.+.|+|.|++||||||+++.|++.+++++
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 45699999999999999999999998887
No 169
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.17 E-value=1.3e-06 Score=61.71 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=27.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
++...++|.||||+||||+|..|++.++..+++
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 345679999999999999999999988665554
No 170
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.15 E-value=2e-06 Score=66.78 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=29.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.+..|+|+||||+|||++++.++..++.+++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 457899999999999999999999999888643
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.15 E-value=1.7e-06 Score=65.62 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
....++|+|+||+||||+++.+++.++.+++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 456799999999999999999999998877644
No 172
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.15 E-value=1.9e-06 Score=68.07 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=28.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc-CCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST-QLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~ 39 (176)
..++.|+|+||||+|||+++++++..+ +.+++.
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~ 198 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 198 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence 345789999999999999999999998 776653
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.14 E-value=1.9e-06 Score=65.57 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRH 37 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~ 37 (176)
.+..++|+||||+||||+++.++..++..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 346799999999999999999999987654
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=2.1e-06 Score=69.08 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=29.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
.++.++|+||||+||||+++.+++.+|+.++..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 457899999999999999999999999887643
No 175
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.12 E-value=3.3e-06 Score=59.35 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=28.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVR 45 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~ 45 (176)
..++|+|++|+||||+++.++..+ +. .+++..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 789999999999999999999876 33 3456665543
No 176
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.12 E-value=2e-05 Score=62.88 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~ 39 (176)
..+.+|+|.|..||||+|+.+.|.+.+ |+.++.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a 76 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQS 76 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 457899999999999999999999988 444443
No 177
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.12 E-value=1.5e-06 Score=59.85 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccch---HHHHHHHHHHh-hcCCeEE
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE---DLVCDELEDIM-EQGGNIV 82 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~-~~~~~vi 82 (176)
.++.+++|.||+||||||+++.+. .|...++.+.+.. ... +..+. ..+.. +.+........ .+...++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~g-~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCRG-LMS-DDEND----QTVTGAAFDVLHYIVSKRLQLGKLTVV 78 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHHH-HHC-SSTTC----GGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHHH-Hhc-Ccccc----hhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 467799999999999999999874 3456666554432 111 11110 11111 11122222222 2334555
Q ss_pred cCCCCCC-CCC---------CcccEEEEEeCChHHHHHHHhhcC
Q 030477 83 DYHGCDF-FPE---------RWFDRVVVLQTENSVLYDRLTKRG 116 (176)
Q Consensus 83 d~~~~~~-~~~---------~~~~~vi~l~~~~~~~~~R~~~r~ 116 (176)
+...... ..+ ...-.+++|+-|...+-.|...|.
T Consensus 79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 5432110 000 011247889999999999988775
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.11 E-value=2.7e-06 Score=63.68 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|+||||+|||++++.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999987
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.11 E-value=2.8e-06 Score=62.85 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=25.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
++.++|.|||||||||+++.|+..++..++.
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 4459999999999999999999987655543
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.11 E-value=2.8e-06 Score=65.64 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
...++.+|+|.|||||||||+++.|+..++..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 35677899999999999999999999988776665
No 181
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.11 E-value=3.1e-05 Score=61.81 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~ 39 (176)
.+.+|+|.|..||||+|+.+.|.+.+ |+.++.
T Consensus 299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~ 333 (500)
T 3czp_A 299 HSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVP 333 (500)
T ss_dssp CEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEE
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 56789999999999999999999988 555554
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.11 E-value=2.3e-06 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....|+|+|+||||||++|+.+++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999998865
No 183
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.10 E-value=2.3e-06 Score=59.14 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
|..+++++|+|++||||||+++.|...+
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4457899999999999999999998764
No 184
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.10 E-value=2.9e-06 Score=67.79 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=30.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
...+..++|+||||+|||+++++++..++.+++..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45667899999999999999999999998887643
No 185
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.09 E-value=2.2e-06 Score=61.33 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.+++|.||+||||||+++.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578899999999999999999998865
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.09 E-value=3.4e-06 Score=67.46 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=27.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.-++.++|+|||||||||++++|+..++.+++.
T Consensus 62 ~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 62 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 345569999999999999999999988766654
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.08 E-value=2.1e-06 Score=59.60 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=23.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
+.+.|.||+||||||+.+.|+..++..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368899999999999999999887643
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.06 E-value=2.8e-06 Score=64.13 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=28.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~ 43 (176)
.+..++|+||||+||||+++.++..+ +.+ +++..++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 45789999999999999999999977 544 4565554
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.04 E-value=4.2e-06 Score=66.15 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=28.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
...++|+||||+||||+++.|++.++..++..
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 35799999999999999999999998887654
No 190
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.02 E-value=3.8e-06 Score=57.73 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++++|.|+|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999998875
No 191
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.02 E-value=4e-06 Score=59.37 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
..++.++.|.||+||||||+.+.|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45778999999999999999999988663
No 192
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.01 E-value=4.5e-06 Score=70.56 Aligned_cols=36 Identities=36% Similarity=0.461 Sum_probs=31.0
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
....+..|+|+|||||||||+++.|+..++.+++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 456778999999999999999999999998877543
No 193
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.99 E-value=4.1e-05 Score=54.89 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=25.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc---CCe--Eeehh
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST---QLR--HINIG 41 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~ 41 (176)
..|++.|++|+||||++-.++..+ |.. +++.|
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 458999999999999998888765 544 44554
No 194
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.98 E-value=4.5e-06 Score=62.77 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=27.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
.+..++|+|++|+||||+++.+++.++.+++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3467999999999999999999999887764
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.97 E-value=1.5e-06 Score=58.01 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
....|+|+|+||+|||++|+.++...+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 446799999999999999999988765
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.97 E-value=6.3e-06 Score=63.14 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=24.7
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
+..++|+||||+|||++++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999864
No 197
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.96 E-value=4.5e-05 Score=56.91 Aligned_cols=151 Identities=10% Similarity=0.092 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccchH--------------------
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINED-------------------- 65 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 65 (176)
..++.|+|+|| ||+|+.+.|.+++.. ..++.+...+.+...+.-+.++.... ..+
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~-s~e~fe~~i~~~~flE~a~~~gn 173 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVS-SREQMERDIQNHLFIEAGQYNDN 173 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECS-CHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccC-CHHHHHHHHhcCceEEEEEEccc
Confidence 46678999998 599999999988754 33555555665554444333332110 111
Q ss_pred ---HHHHHHHHHh-hcCCeEEcCCC--CCCCCCC-cccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHHHH
Q 030477 66 ---LVCDELEDIM-EQGGNIVDYHG--CDFFPER-WFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE 137 (176)
Q Consensus 66 ---~l~~~i~~~~-~~~~~vid~~~--~~~~~~~-~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 137 (176)
+..+.++..+ .+..+|+|... ...+... ..-.+||+.+| .+++.+|+..|+. + .. ..+..+....
T Consensus 174 ~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~--e----~~-~~~~~r~~k~ 246 (292)
T 3tvt_A 174 LYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE--E----QA-KKTYERAIKM 246 (292)
T ss_dssp EEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT--T----HH-HHHHHHHHHH
T ss_pred eeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCc--h----hH-HHHHHHHHHH
Confidence 2234445444 34556776421 1011111 12257888764 6777776654432 1 11 1122222111
Q ss_pred HHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 138 AKESYPEDIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 138 ~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
+..|.......+.+++.++..+.+..++...
T Consensus 247 -e~e~~~~fD~vIvNddle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 247 -EQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp -HHHHTTTCSEEECCSSHHHHHHHHHHHHHHH
T ss_pred -HHhhhhhCCEEEECcCHHHHHHHHHHHHHHh
Confidence 1223331112233456888888888777654
No 198
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.95 E-value=3.9e-06 Score=63.37 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=25.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++..++|+||||+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 477899999999999999999999987
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.95 E-value=6.8e-06 Score=66.54 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=28.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
++..++|.|||||||||+++.|+..++.+++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 56789999999999999999999998776643
No 200
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.94 E-value=5.5e-06 Score=63.55 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..+..++|+||||+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999887
No 201
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.94 E-value=7.6e-06 Score=62.88 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..++|+||+|+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.92 E-value=7.1e-06 Score=61.85 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=27.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI 40 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~ 40 (176)
+..+++.||||+||||+++.+++.++..++..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45778889999999999999999998777643
No 203
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.92 E-value=4.7e-06 Score=63.07 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=26.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLRHI 38 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~ 38 (176)
+..++|.||||+|||++++.+++.++.+++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 357999999999999999999999887654
No 204
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.90 E-value=8e-06 Score=57.55 Aligned_cols=25 Identities=52% Similarity=0.833 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+.++|+|++|+||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999999875
No 205
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.89 E-value=6.4e-06 Score=59.54 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALA 30 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La 30 (176)
..++.+++|.||+||||||+++.|+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4577899999999999999999987
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.89 E-value=9.4e-06 Score=62.15 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=27.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc------CCeEee
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST------QLRHIN 39 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l------~~~~~~ 39 (176)
..+..++|+|++|+||||+++.+++.+ +..++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 81 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY 81 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 356789999999999999999999877 665543
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.89 E-value=9.6e-06 Score=64.48 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|+||||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986
No 208
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.89 E-value=0.00023 Score=52.63 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~ 40 (176)
.+.+|+|.|..||||+++.+.|.+.+ |+.++..
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~ 109 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF 109 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC
Confidence 46788999999999999999999988 4555543
No 209
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.89 E-value=9e-06 Score=55.28 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 566789999999999999999999876
No 210
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.89 E-value=6.5e-06 Score=57.10 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.5
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRH 37 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~ 37 (176)
+|+|+|++||||||+|..|+.. |.++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 4789999999999999999987 6543
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.88 E-value=8.4e-06 Score=60.93 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.2
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++|+|||||||||+++.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 379999999999999999999986
No 212
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.88 E-value=9e-06 Score=57.96 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
+..++|+|++|+||||+++.+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999998774
No 213
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.86 E-value=1.4e-05 Score=58.60 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
....|+|+|+||+|||++++.+++.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 456799999999999999999998763
No 214
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.85 E-value=1.4e-05 Score=60.10 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcC----Ce--EeehhHHHhh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQ----LR--HINIGELVRE 46 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~----~~--~~~~~~~~~~ 46 (176)
...++|+||||+|||+++.+++..+. .. +++..+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 57899999999999999999987653 33 4566665443
No 215
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=1.4e-05 Score=61.42 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=22.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++|+||+|+||||+++.++..+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999887
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.83 E-value=1.3e-05 Score=56.75 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=28.5
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIG 41 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~ 41 (176)
++.++.+++|.|++||||||++..|+...+ ..+++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 456788999999999999999999986433 3345443
No 217
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.82 E-value=1.5e-05 Score=54.84 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
...-|+|+|+||+||||+|..|.+ -|+.+++ ||.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lva-DD~ 48 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVC-DDV 48 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEE-SSE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEec-CCE
Confidence 456799999999999999999987 4887777 443
No 218
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.82 E-value=1.4e-05 Score=59.96 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRH 37 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~ 37 (176)
..++..+.|.||+||||||+++.|+.-+.-.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 46788999999999999999999988663333
No 219
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.82 E-value=7.1e-06 Score=58.57 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.++.++.|.||+||||||+++.|+..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999874
No 220
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.81 E-value=6.7e-06 Score=69.51 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=29.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
..++..++|.|||||||||+++.|+..++..++.
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3466789999999999999999999998777654
No 221
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.80 E-value=1.1e-05 Score=58.49 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3577899999999999999999997643
No 222
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.80 E-value=1.2e-05 Score=57.28 Aligned_cols=28 Identities=36% Similarity=0.351 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.+++|.|++||||||+++.|+..+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998643
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.79 E-value=1.3e-05 Score=59.00 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.+++|+||+||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4566789999999999999999998754
No 224
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.77 E-value=1.7e-05 Score=62.62 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=28.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc-----CCe--EeehhHH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST-----QLR--HINIGEL 43 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l-----~~~--~~~~~~~ 43 (176)
+..++|+||||+||||+++.++..+ +.. +++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 5689999999999999999999876 443 4565554
No 225
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.76 E-value=1.8e-05 Score=55.11 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+++++|++||||||++..++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999997666654
No 226
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.76 E-value=1.9e-05 Score=55.21 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..+.|.|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999998876
No 227
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=1.8e-05 Score=60.17 Aligned_cols=24 Identities=54% Similarity=0.840 Sum_probs=21.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++|+||+|+||||+++.+++.+
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999986
No 228
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.73 E-value=1.5e-05 Score=57.22 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999997643
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.73 E-value=2.2e-05 Score=65.89 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=27.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc----------CCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST----------QLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l----------~~~~~~~~~ 42 (176)
....++|+||||+||||+++.|++.+ +..++..+-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 45679999999999999999999986 666665443
No 230
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.73 E-value=1.6e-05 Score=57.65 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999997643
No 231
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.73 E-value=2.2e-05 Score=59.00 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|.|.||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999998765
No 232
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.73 E-value=2.7e-05 Score=57.20 Aligned_cols=28 Identities=32% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
+...|+|.||||+|||+++.+|+..++.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4557999999999999999999986543
No 233
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.73 E-value=1.1e-05 Score=60.90 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
|.+.++++|+|+.||||||+.+.|...
T Consensus 1 m~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 1 MNPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp -CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCcccEEEEEecCCCCHHHHHHHHHhh
Confidence 346789999999999999999999853
No 234
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.72 E-value=1.8e-05 Score=56.91 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=24.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..++.++.|.|++||||||++..|+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457789999999999999999999874
No 235
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=2.2e-05 Score=59.65 Aligned_cols=25 Identities=48% Similarity=0.740 Sum_probs=22.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
+.++|+||||+||||+++.+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998863
No 236
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.69 E-value=2.2e-05 Score=57.72 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577899999999999999999997644
No 237
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.69 E-value=9.4e-06 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+.|.|++||||||+++.|+..+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 238
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.69 E-value=2.7e-05 Score=57.98 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=25.2
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.++.+++|.|+|||||||+++.|+..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999998754
No 239
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=2.2e-05 Score=59.74 Aligned_cols=25 Identities=48% Similarity=0.671 Sum_probs=21.9
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+.++|+||+|+||||+++.|+..+
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3449999999999999999999964
No 240
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.68 E-value=2.2e-05 Score=58.15 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999997643
No 241
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=3.2e-05 Score=58.00 Aligned_cols=26 Identities=50% Similarity=0.782 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+.++|+||+|+||||+++.+++.+
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34469999999999999999999986
No 242
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.68 E-value=2.2e-05 Score=56.00 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999997643
No 243
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.67 E-value=3.3e-05 Score=54.48 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+++++++|+||||||++|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999886443
No 244
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.67 E-value=3.9e-05 Score=57.96 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=29.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGEL 43 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~ 43 (176)
..++|+|++|+||||+++.+++..++.+++....
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~ 65 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCREL 65 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecc
Confidence 6899999999999999999999888777776543
No 245
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.67 E-value=2.4e-05 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999997643
No 246
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.67 E-value=2.6e-05 Score=58.64 Aligned_cols=27 Identities=41% Similarity=0.468 Sum_probs=23.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 356789999999999999999998865
No 247
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.67 E-value=2.8e-05 Score=57.29 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..++.++.|.||+||||||+.+.|+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357789999999999999999999774
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.67 E-value=3e-05 Score=58.20 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998865
No 249
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.66 E-value=2.6e-05 Score=57.40 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3567899999999999999999997644
No 250
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.66 E-value=3e-05 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.++.++.|.|++||||||+.+.|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999773
No 251
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.66 E-value=3e-05 Score=56.26 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+ .++.|.||+||||||+.+.|+.-+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 789999999999999999998754
No 252
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.66 E-value=2.7e-05 Score=59.15 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|.||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999998765
No 253
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.66 E-value=2.3e-05 Score=57.93 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999997754
No 254
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.66 E-value=2.4e-05 Score=57.00 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+.+.|+.-+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997644
No 255
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.66 E-value=2.6e-05 Score=56.19 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999997654
No 256
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.66 E-value=1.6e-05 Score=60.34 Aligned_cols=25 Identities=44% Similarity=0.538 Sum_probs=22.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
..++|+|+||+|||++++.+++.++
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4599999999999999999999876
No 257
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.65 E-value=2e-05 Score=57.31 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567799999999999999999997643
No 258
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.65 E-value=2e-05 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
++.++.|.||+||||||+.+.|+.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999976
No 259
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.65 E-value=2.7e-05 Score=57.16 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3577899999999999999999997643
No 260
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.64 E-value=3.5e-05 Score=58.93 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
+..++|+||+|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999998753
No 261
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.64 E-value=2.9e-05 Score=56.91 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577899999999999999999997644
No 262
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.64 E-value=2.7e-05 Score=56.46 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999997644
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.64 E-value=2.8e-05 Score=57.01 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997644
No 264
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.63 E-value=3.7e-05 Score=57.43 Aligned_cols=25 Identities=52% Similarity=0.833 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+.++|+||+|+||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 38 IPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3459999999999999999999985
No 265
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.62 E-value=4.5e-05 Score=53.90 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+...|+|.|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998753
No 266
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.61 E-value=2.9e-05 Score=57.17 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3577899999999999999999997643
No 267
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.61 E-value=3.1e-05 Score=55.74 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=23.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..++.+++|.|+|||||||++..++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457789999999999999998888654
No 268
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.60 E-value=3.4e-05 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467789999999999999999997644
No 269
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.60 E-value=3.8e-05 Score=58.91 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++-++.|.||+||||||+.+.|+.-+
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3567899999999999999999998744
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=5.1e-05 Score=63.67 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=28.5
Q ss_pred eEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHH
Q 030477 11 NILVTGTPGTGKTTTSTALAESTQLRHI--NIGELV 44 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~ 44 (176)
.++|+||||+|||++|+.|++.++.+++ +++++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 6999999999999999999999987664 555543
No 271
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.58 E-value=3.7e-05 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467799999999999999999997644
No 272
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.58 E-value=4.8e-05 Score=58.80 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++-++.|.||+||||||+.+.|+.-+
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3567899999999999999999998744
No 273
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=5e-05 Score=56.81 Aligned_cols=25 Identities=40% Similarity=0.771 Sum_probs=22.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+.++|+||+|+||||+++.+++.+
T Consensus 42 ~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 42 MPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3449999999999999999999885
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.57 E-value=3.9e-05 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997643
No 275
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.57 E-value=4.6e-05 Score=52.77 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=24.3
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
++..+...|+|.|.+|+||||+...|...
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33446789999999999999999999754
No 276
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.57 E-value=4.7e-05 Score=56.96 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+|.|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998654
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.57 E-value=3.9e-05 Score=58.95 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+++|+|++||||||+.+.|+..+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 366799999999999999999998865
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.57 E-value=4.2e-05 Score=59.06 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=24.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.+++|+||+||||||+.+.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456789999999999999999998754
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.57 E-value=4.3e-05 Score=58.63 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..+|+|+||+||||||+.+.|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44589999999999999999997754
No 280
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.56 E-value=3.5e-05 Score=56.99 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.++.+++|.|++||||||++..++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999753
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.56 E-value=5e-05 Score=58.32 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|.|++||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456799999999999999999998865
No 282
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.56 E-value=5.2e-05 Score=58.22 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3567899999999999999999998743
No 283
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.56 E-value=3.7e-05 Score=61.55 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
+..|+|+||||+|||++|+.|+..++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 45799999999999999999999874
No 284
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.55 E-value=4.8e-05 Score=64.72 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|+|+||+||||+++.|++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999999987
No 285
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.55 E-value=5.5e-05 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3567899999999999999999998744
No 286
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.54 E-value=5.7e-05 Score=58.27 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3567899999999999999999998743
No 287
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.54 E-value=0.00099 Score=55.71 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhccccc-chH-------------------
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVI-NED------------------- 65 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------- 65 (176)
..++.|+|+|| ||+|+.+.|.+.+.- ..++.....|.+...+.-+.++. +. +.+
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~--Fv~s~~~f~~~i~~~~flE~~~~~g 603 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH--FVSSREKMEKDIRAHKFIEAGQYNS 603 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeE--EecCHHHHHHHHhcCCceEEEEECC
Confidence 45688999999 499999999887642 23455555555544333222221 11 111
Q ss_pred ----HHHHHHHHHhh-cCCeEEcCCCCC--CCC-CCcccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHHH
Q 030477 66 ----LVCDELEDIME-QGGNIVDYHGCD--FFP-ERWFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE 136 (176)
Q Consensus 66 ----~l~~~i~~~~~-~~~~vid~~~~~--~~~-~~~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~ 136 (176)
.-.+.+++.+. +..+|+|..... .+. ...+-++||+.++ .+++.+ +..|+.+ +.. ..++.....
T Consensus 604 ~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~t~-----~~~-~~rl~~a~~ 676 (721)
T 2xkx_A 604 HLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRITE-----EQA-RKAFDRATK 676 (721)
T ss_pred ccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccCCH-----HHH-HHHHHHHHH
Confidence 22333444443 445677753210 011 0112268888866 555555 7666521 111 123332211
Q ss_pred HHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477 137 EAKESYPEDIVLALKSDTIEDITRNIAILTDWV 169 (176)
Q Consensus 137 ~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~ 169 (176)
. +..|.......+.+++.++..+.+..++...
T Consensus 677 ~-e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~ 708 (721)
T 2xkx_A 677 L-EQEFTECFSAIVEGDSFEEIYHKVKRVIEDL 708 (721)
T ss_pred H-HHhccccCcEEEECcCHHHHHHHHHHHHHhc
Confidence 1 1123332122233446777777777777544
No 288
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.53 E-value=5.6e-05 Score=57.91 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467799999999999999999998743
No 289
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.53 E-value=5.6e-05 Score=54.24 Aligned_cols=27 Identities=19% Similarity=0.023 Sum_probs=23.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..+++++|++|+||||++..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999888776
No 290
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.52 E-value=5.4e-05 Score=56.80 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....|+|+|+||+|||++|+.+++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 45679999999999999999998854
No 291
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.52 E-value=6.6e-05 Score=59.81 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|.|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 467799999999999999999998765
No 292
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.51 E-value=6.6e-05 Score=57.69 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3577899999999999999999997743
No 293
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.51 E-value=7.3e-05 Score=51.57 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+....+.|+|.|.+|+||||+...|...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3345678999999999999999999664
No 294
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.50 E-value=4.7e-05 Score=56.81 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+.-+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3577899999999999999999997643
No 295
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.49 E-value=6.8e-05 Score=57.84 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+.-+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 467799999999999999999998743
No 296
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.48 E-value=4.1e-05 Score=58.57 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3567899999999999999999998743
No 297
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.48 E-value=5.1e-05 Score=58.33 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.5
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQLR 36 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~~ 36 (176)
...+.|.|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5688999999999999999999877543
No 298
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.47 E-value=7.5e-05 Score=56.87 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..+..++.|.|+|||||||+.+.|+..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3567789999999999999999998643
No 299
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.47 E-value=3.4e-05 Score=57.99 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|++||||||+.+.|+.-+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3577899999999999999999997644
No 300
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.47 E-value=5.8e-05 Score=59.33 Aligned_cols=26 Identities=38% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 301
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.46 E-value=6.5e-05 Score=58.31 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..++.++.|.||+||||||+.+.|+.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 356789999999999999999999763
No 302
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.45 E-value=6e-05 Score=56.91 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=26.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC--CeEeeh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ--LRHINI 40 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~ 40 (176)
++..++|+||||+||||++..++...| +.|++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 456789999999999999999987533 446665
No 303
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.45 E-value=6.9e-05 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.|.||+||||||+.+.|+.-+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999997643
No 304
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.45 E-value=7.8e-05 Score=58.39 Aligned_cols=26 Identities=42% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..+|+|+||+||||||+.+.|...+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998866
No 305
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.44 E-value=7.6e-05 Score=59.16 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.|++||||||+++.|+.-+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 467899999999999999999998754
No 306
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=8.5e-05 Score=57.00 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeeh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINI 40 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~ 40 (176)
..++.+++|.|+||+||||+|..++..+ .+.+++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4577899999999999999999998654 3456665
No 307
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.44 E-value=7.5e-05 Score=58.80 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998765
No 308
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.43 E-value=5.6e-05 Score=57.96 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.++.++.|.|||||||||++..++..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999999998764
No 309
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.43 E-value=0.00089 Score=51.96 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=52.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDYH 85 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~~ 85 (176)
..++.|+|+||+| +|+.+.|.+.+.-.+.++ .+.+...+.-+.++ +|+ -.+.+++.+. +..+|+|..
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~pR~gE~dG~~Y--~Fv----~~~~V~~~~~~Gk~~iLdId 297 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEPRDAGTDQRSS--GII----RLHTIKQIIDQDKHALLDVT 297 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCCCCSSSCCC----CCC----CHHHHHHHHTTTCEEEECCC
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCCCCcccCCccC--CcC----cHHHHHHHHHcCCEEEEEeC
Confidence 4678999999998 899999988875445442 23333333323333 233 2445555554 456777752
Q ss_pred CC--CCCCC-CcccEEEEEeC-ChHHHHHHHhhcC
Q 030477 86 GC--DFFPE-RWFDRVVVLQT-ENSVLYDRLTKRG 116 (176)
Q Consensus 86 ~~--~~~~~-~~~~~vi~l~~-~~~~~~~R~~~r~ 116 (176)
.. ..+.. ...-.+||+.+ |.+++.+| ..|.
T Consensus 298 ~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~ 331 (391)
T 3tsz_A 298 PNAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRL 331 (391)
T ss_dssp HHHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHH
T ss_pred HHHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcC
Confidence 21 01110 01125677766 46777665 4443
No 310
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.43 E-value=8.7e-05 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....|.|+|+|||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998753
No 311
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.42 E-value=0.00011 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477 9 RPNILVTGTPGTGKTTTSTALAESTQL 35 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l~~ 35 (176)
+..++|+||+|+||||+++.+++.+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 456999999999999999999998754
No 312
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.42 E-value=8.3e-05 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+.|+|+|.+||||||+...|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998875
No 313
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.42 E-value=9e-05 Score=56.04 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+|.|+|++|+||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998765
No 314
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.41 E-value=0.00012 Score=51.32 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..+.++++++|++||||||.+-.++.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456799999999999999999998876
No 315
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.00014 Score=61.13 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..++|+|+||+||||+++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999986
No 316
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.41 E-value=5.8e-05 Score=57.77 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||++..|+...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998765
No 317
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.0001 Score=51.25 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+...|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999764
No 318
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.40 E-value=0.00012 Score=49.43 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.|.+...|+|.|.+|+||||+...|...
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3556788999999999999999999653
No 319
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.40 E-value=7.8e-05 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999763
No 320
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.40 E-value=4.8e-05 Score=58.29 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.||+||||||+.+.|+.-+
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3567899999999999999999998743
No 321
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.39 E-value=8.2e-05 Score=54.91 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..+.|.|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998754
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.39 E-value=7.2e-05 Score=51.98 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..|+|.|++||||||+.+.|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999774
No 323
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.39 E-value=9.5e-05 Score=53.23 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
..++.+++|+|+||+|||++|..++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45778999999999999999988754
No 324
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.39 E-value=0.0001 Score=56.48 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+.+.|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998765
No 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.39 E-value=8.7e-05 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|++|+||||+.+.|...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999753
No 326
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.38 E-value=7.6e-05 Score=56.68 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++..++|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998765
No 327
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.37 E-value=0.00012 Score=60.07 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
....++|.|||||||||+++.|+..++
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 446899999999999999999999763
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.36 E-value=0.00012 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=21.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.|+|.|++|+||||+.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999765
No 329
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.36 E-value=9.2e-05 Score=56.65 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG 41 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~ 41 (176)
..++.++.|.|+|||||||++..++... .+.+++..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4577899999999999999999998653 34556654
No 330
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.36 E-value=0.00032 Score=55.59 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=47.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcCC
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDYH 85 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~~ 85 (176)
..+++|+|+||+|+| +.+.|.+++.-.|.+. ..+ +...+.-+.++ + + +-.+.++..+. +..+|+|..
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~--~TR-pR~gE~dG~~Y--~-F---Ts~~~V~~vl~~Gk~~iLdId 289 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIA--KSE-PRDAGTDQRSS--G-I---IRLHTIKQIIDQDKHALLDVT 289 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC--CCB-C------------C-B---CCHHHHHHHHTTTCEEEECCC
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceeee--cCC-CCCcccccccC--C-c---ccHHHHHHHHHCCCeEEEEeC
Confidence 467899999999999 8888888775444442 233 33333222222 2 2 34455565554 456777752
Q ss_pred CC--CCCCC-CcccEEEEEeCC-hHHHHH
Q 030477 86 GC--DFFPE-RWFDRVVVLQTE-NSVLYD 110 (176)
Q Consensus 86 ~~--~~~~~-~~~~~vi~l~~~-~~~~~~ 110 (176)
.. ..+.. ...-++|||.+| .+++.+
T Consensus 290 ~qg~~~l~~~~~~p~~IFI~PPS~e~L~~ 318 (468)
T 3shw_A 290 PNAVDRLNYAQWYPIVVFLNPDSKQGVKT 318 (468)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCHHHHHH
Confidence 21 01110 011257777765 566654
No 331
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.35 E-value=0.00013 Score=55.11 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=26.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCC--eEeehh
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQL--RHINIG 41 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~--~~~~~~ 41 (176)
+.++|+|++|+||||+++.+++.++. .+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 58999999999999999999987643 455544
No 332
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.35 E-value=8.9e-05 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALA 30 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La 30 (176)
+.++.++.|+|+|||||||++..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4577899999999999999999776
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.35 E-value=0.00015 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcC
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQ 34 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~ 34 (176)
.+.+|+|+.||||||+.++|.--++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999976554
No 334
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.34 E-value=0.00015 Score=60.95 Aligned_cols=35 Identities=34% Similarity=0.573 Sum_probs=27.9
Q ss_pred eEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHh
Q 030477 11 NILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVR 45 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~ 45 (176)
.++|+||||+|||++|+.|++.+ + +..++++++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 59999999999999999999986 3 34456666543
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.33 E-value=0.00012 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 5578999999999999999999764
No 336
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.33 E-value=0.00021 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.+...|+|.|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999965
No 337
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.33 E-value=0.00012 Score=57.64 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998865
No 338
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.33 E-value=0.00018 Score=54.18 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..++.+++|+|+||+||||++..++...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999998654
No 339
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00012 Score=50.22 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999763
No 340
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.32 E-value=0.00016 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|+|+|||||||++..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4567899999999999999999998753
No 341
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.32 E-value=0.00013 Score=54.79 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE 42 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~ 42 (176)
.+..|+|+|+||+||||+|-.|.+ -|..+++ ||
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~-DD 178 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG-DD 178 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE-EE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe-CC
Confidence 356799999999999999999966 5777776 44
No 342
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.31 E-value=0.00011 Score=59.06 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++..++|+||+||||||+.+.|...+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356679999999999999999998755
No 343
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.31 E-value=0.00011 Score=56.89 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCCeEEE--ECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILV--TGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l--~G~~GsGKSTla~~La~~l 33 (176)
.+..++| +|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567888 9999999999999998875
No 344
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0002 Score=49.42 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|++|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999764
No 345
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.31 E-value=0.00011 Score=51.29 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|++||||||+.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999764
No 346
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.31 E-value=0.00018 Score=54.16 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=26.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
.+..++|+|++|+||||++..|.++ |..++.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 3567999999999999999999774 777776
No 347
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.30 E-value=0.00015 Score=55.30 Aligned_cols=28 Identities=29% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
++.++.++.|+|+|||||||++..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567789999999999999999999875
No 348
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.30 E-value=0.00014 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+.|+|.|.+|+||||+...|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998764
No 349
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.29 E-value=7.2e-05 Score=52.49 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
..++..|+|.|++||||||+.+.|..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45667899999999999999999954
No 350
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.28 E-value=0.00014 Score=48.86 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999763
No 351
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.28 E-value=0.00013 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|++.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.28 E-value=0.00015 Score=48.45 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999754
No 353
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.27 E-value=0.00018 Score=55.16 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++..+.|.|++|+||||+.+.|+..+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 45689999999999999999997644
No 354
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.26 E-value=0.00018 Score=56.32 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCCCCe--EEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPN--ILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~--I~l~G~~GsGKSTla~~La~~ 32 (176)
+.++.+ +.|.|++||||||+.+.|+..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 345667 999999999999999999764
No 355
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.25 E-value=0.0002 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....+.|.|++||||||+.+.|. .+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45789999999999999999998 54
No 356
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.24 E-value=0.00015 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.2
Q ss_pred CeEEEECCCCCChHHHHHHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~ 31 (176)
..|+|.|++|+||||+.+.|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999975
No 357
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.23 E-value=0.00025 Score=56.06 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..++.+++|.|+||+||||++..++..+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987753
No 358
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.23 E-value=0.0002 Score=55.13 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=28.6
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG 41 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~ 41 (176)
..++.+++|.|+||+||||+|..++... .+.|++++
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4577899999999999999999987754 34566654
No 359
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.23 E-value=0.00026 Score=48.20 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..+...|+|.|.+|+||||+.+.+...
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 346688999999999999999999754
No 360
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.23 E-value=0.00016 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
++..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999999764
No 361
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.23 E-value=0.00022 Score=58.13 Aligned_cols=26 Identities=42% Similarity=0.695 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
...+++|+|+|||||||++..|+..+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998754
No 362
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.23 E-value=0.00017 Score=61.44 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++|+||||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 363
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.22 E-value=0.00017 Score=48.20 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999764
No 364
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.21 E-value=0.00018 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999764
No 365
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.21 E-value=0.00012 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999764
No 366
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.20 E-value=0.00019 Score=54.62 Aligned_cols=27 Identities=37% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+..+|.|+|++|+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999998654
No 367
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.19 E-value=0.00025 Score=57.29 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++-++.|.|++||||||+.+.|+..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999998744
No 368
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.18 E-value=0.00024 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.2
Q ss_pred CeEEEECCCCCChHHHHHHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~ 31 (176)
..|+|.|++|+||||+.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999975
No 369
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.18 E-value=0.00011 Score=60.11 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.7
Q ss_pred CeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477 10 PNILVTGTPGTGKTTTSTALAESTQLRHIN 39 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~ 39 (176)
..|+|.||||+|||++|+.+++.++..++.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 379999999999999999999988655543
No 370
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.17 E-value=0.00024 Score=53.07 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|.|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899999999999999998765
No 371
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.17 E-value=0.00018 Score=50.21 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 45678999999999999999999763
No 372
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.17 E-value=0.00031 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+...|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999764
No 373
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.17 E-value=0.00029 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.1
Q ss_pred CeEEEECCCCCChHHHHHHHHHhc
Q 030477 10 PNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++|.|++||||||++..++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998876
No 374
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.16 E-value=0.00018 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3458999999999999999999764
No 375
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.16 E-value=0.00036 Score=50.70 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++..++++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 356788899999999999999998654
No 376
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.16 E-value=0.00027 Score=55.72 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..++..+.|.|++||||||+.+.|+...
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34678899999999999999999998865
No 377
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.16 E-value=0.00025 Score=49.34 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+.+.|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999754
No 378
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.16 E-value=0.00024 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999763
No 379
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.15 E-value=0.00012 Score=51.82 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=24.0
Q ss_pred cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 4 DSKRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+..+.+.|+|.|.+|+||||+...|...
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 33345678999999999999999999654
No 380
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.15 E-value=0.00028 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999999754
No 381
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.15 E-value=0.00021 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999754
No 382
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.14 E-value=0.00025 Score=57.80 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++..+.|.||+||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999997754
No 383
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.14 E-value=0.00024 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++||||||+.+.|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999654
No 384
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.13 E-value=0.00025 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3467999999999999999999653
No 385
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=0.00028 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....+.|.|++||||||+.+.|+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 35688999999999999999996543
No 386
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00023 Score=47.82 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~ 31 (176)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45789999999999999999975
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.12 E-value=0.00025 Score=56.82 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+|+|++||||||++..|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999654
No 388
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.12 E-value=0.00019 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=23.7
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..++.++.|+|+|||||||++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999864
No 389
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.11 E-value=0.00025 Score=54.16 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++..+.|.|++||||||+.+.|+...
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4577899999999999999999998876
No 390
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.11 E-value=0.00017 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+...|+|.|.+|+||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999974
No 391
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.10 E-value=0.00028 Score=49.14 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999754
No 392
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.10 E-value=0.00033 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHH
Q 030477 9 RPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~ 31 (176)
...|+|.|.+|+||||+.+.|..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 35799999999999999999953
No 393
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.10 E-value=0.00025 Score=55.40 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+...+.|.|++||||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 344899999999999999999987
No 394
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.10 E-value=0.00027 Score=49.27 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35578999999999999999999764
No 395
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.09 E-value=0.00026 Score=57.77 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++..+.|.||+||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 567899999999999999999997754
No 396
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.08 E-value=0.00037 Score=55.50 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.+ .++.|.||+||||||+.+.|+.-+
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 45 789999999999999999998754
No 397
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.08 E-value=0.00024 Score=48.59 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999754
No 398
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.07 E-value=0.0002 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+...|+|.|.+|+||||+.+.|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999853
No 399
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.06 E-value=0.00043 Score=54.58 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.1
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..++.+++|+|+||+||||++..++...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987753
No 400
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00041 Score=56.86 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=23.9
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||+||||||+.+.|+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 401
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.05 E-value=0.00029 Score=57.69 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++..+.|.||+||||||+.+.|+.-+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4577899999999999999999997654
No 402
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.05 E-value=0.00038 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 5568999999999999999999763
No 403
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.04 E-value=0.0004 Score=49.47 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=22.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+...|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999653
No 404
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.04 E-value=0.00048 Score=52.41 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=25.5
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..++-+++|.|+||+||||++..++..+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999998764
No 405
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.04 E-value=0.00042 Score=46.50 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999764
No 406
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.04 E-value=0.00043 Score=46.36 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=20.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..|+|.|++|+||||+.+.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 407
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.03 E-value=0.00029 Score=52.66 Aligned_cols=25 Identities=44% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+|+++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6688899999999999999998765
No 408
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.03 E-value=0.00027 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.+...|+|.|.+|+||||+...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999954
No 409
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.03 E-value=0.0003 Score=56.69 Aligned_cols=24 Identities=42% Similarity=0.464 Sum_probs=21.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTAL 29 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~L 29 (176)
..++.++.|.|++||||||+++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 346789999999999999999994
No 410
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.02 E-value=0.00028 Score=57.69 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++..+.|.||+||||||+.+.|+.-+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 577899999999999999999997754
No 411
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.02 E-value=0.00046 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999754
No 412
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.02 E-value=0.00037 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.+...|+|.|++|+||||+...|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999954
No 413
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.02 E-value=0.00049 Score=46.21 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999754
No 414
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00044 Score=46.28 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+.+.+|+||.||||||+..+|.=-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999996443
No 415
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.01 E-value=0.0004 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+++|++|+||||++..||..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999998654
No 416
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.01 E-value=0.00032 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|++|+||||+...|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999754
No 417
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.00 E-value=0.0005 Score=48.82 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.+.+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788999999999999999988876
No 418
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.00 E-value=0.00046 Score=47.52 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999888653
No 419
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.00 E-value=0.00035 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999764
No 420
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.00 E-value=0.00047 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.7
Q ss_pred CeEEEECCCCCChHHHHHHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~ 31 (176)
..|+|.|++|+||||+...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999964
No 421
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.00 E-value=0.00037 Score=56.32 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=23.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++.++.|.||.||||||+.+.|+..+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356789999999999999999997643
No 422
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.00 E-value=0.00036 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.+|+||||+.+.|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999999764
No 423
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.00 E-value=0.00041 Score=56.88 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.++.|.|++||||||+.+.|+..+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4577899999999999999999997644
No 424
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.99 E-value=0.00035 Score=47.50 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999764
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.99 E-value=0.00039 Score=47.44 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4468999999999999999999764
No 426
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.00039 Score=56.22 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++-++.|.|++||||||+.+.|+.-+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997643
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.99 E-value=0.00045 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.4
Q ss_pred CeEEEECCCCCChHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..|+|.|++|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999753
No 428
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.99 E-value=0.00043 Score=54.30 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.+|+++|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46688899999999999999998865
No 429
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.97 E-value=0.00055 Score=48.09 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999764
No 430
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.97 E-value=0.00014 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
++..+.|.|++|+||||+.+.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 5679999999999999999999543
No 431
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.97 E-value=0.00026 Score=48.75 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+...|+|.|.+|+||||+.+.|...+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999887654
No 432
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.96 E-value=0.0005 Score=48.22 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=22.3
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+...|...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999753
No 433
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.96 E-value=0.00027 Score=48.22 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALA 30 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La 30 (176)
.+...|+|.|++|+||||+...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999999985
No 434
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.96 E-value=0.00029 Score=59.70 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.0
Q ss_pred CCCCeEEEECCCCCChHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTST 27 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~ 27 (176)
++.++++|||++|||||||+-
T Consensus 34 P~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 34 PRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp ESSSEEEEESSTTSSHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999983
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.96 E-value=0.00044 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999999753
No 436
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.95 E-value=0.00048 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.+...|+|.|++|+||||+.+.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999965
No 437
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.95 E-value=0.00058 Score=45.72 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+...|+|.|.+|+||||+...|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999975
No 438
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.95 E-value=0.00046 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.8
Q ss_pred CeEEEECCCCCChHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+.|+|.|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 67999999999999999999654
No 439
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.95 E-value=0.00054 Score=55.37 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++-++.|.|+.||||||+.+.|+..+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999998743
No 440
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.95 E-value=0.00051 Score=48.07 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+...|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999753
No 441
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.94 E-value=0.00046 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.+|+||||+.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999754
No 442
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.94 E-value=0.00046 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999754
No 443
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.94 E-value=0.00048 Score=51.90 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..++ ++.|.|+|||||||++-.++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 4456 7899999999999998877654
No 444
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.94 E-value=0.00045 Score=47.38 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999654
No 445
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.94 E-value=0.00047 Score=47.22 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred CeEEEECCCCCChHHHHHHHHHh
Q 030477 10 PNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~~ 32 (176)
..|+|.|.+|+||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999999764
No 446
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.93 E-value=0.00041 Score=55.89 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++.+++|.|++||||||+++.++...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998653
No 447
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.93 E-value=0.00052 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999753
No 448
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.93 E-value=0.00061 Score=53.77 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.6
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+..++.+++|+|+||+||||++..++...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 45678899999999999999999998764
No 449
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.93 E-value=0.00026 Score=57.71 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++..+.|.||+||||||+.+.|+.-+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3577899999999999999999997654
No 450
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.93 E-value=0.00055 Score=56.16 Aligned_cols=26 Identities=42% Similarity=0.621 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..+.++|+|+|||||||++..+...+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 35789999999999999988776543
No 451
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.93 E-value=0.00066 Score=45.32 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.8
Q ss_pred eEEEECCCCCChHHHHHHHHHh
Q 030477 11 NILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~ 32 (176)
.|+|.|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 452
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.93 E-value=0.00077 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
....++|.|++||||||+++.|...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999997653
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.91 E-value=0.0006 Score=55.91 Aligned_cols=27 Identities=37% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
.++-++.|.||.||||||+.+.|+..+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999998743
No 454
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.90 E-value=0.00048 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 455
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.90 E-value=0.00046 Score=47.99 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
....|+|.|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999653
No 456
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00055 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.+...|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999974
No 457
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.89 E-value=0.00061 Score=46.69 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|++|+||||+.+.|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999999764
No 458
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.88 E-value=0.00033 Score=60.12 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=18.6
Q ss_pred CCCCeEEEECCCCCChHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTS 26 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla 26 (176)
++.++++|||++||||||||
T Consensus 44 P~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 44 PRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp ESSSEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 57799999999999999997
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00067 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+...|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456899999999999999999976
No 460
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.87 E-value=0.00034 Score=59.84 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.6
Q ss_pred CCCCeEEEECCCCCChHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTS 26 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla 26 (176)
++.++++|+|++||||||||
T Consensus 42 P~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 42 PRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp ETTSEEEEEESTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 57799999999999999997
No 461
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.87 E-value=0.0003 Score=60.08 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.2
Q ss_pred CCCCCeEEEECCCCCChHHHH
Q 030477 6 KRSRPNILVTGTPGTGKTTTS 26 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla 26 (176)
+++.++++|||++|||||+||
T Consensus 21 ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 21 IPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EETTSEEEEEESTTSSSHHHH
T ss_pred cCCCcEEEEECCCCCcHHHHH
Confidence 357899999999999999998
No 462
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.87 E-value=0.00043 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+...|+|.|++|+||||+.+.|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999954
No 463
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.87 E-value=0.00038 Score=56.87 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
..++..+.|.||+||||||+.+.|+.-+
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3567899999999999999999997654
No 464
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.87 E-value=0.00066 Score=46.82 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.+|+||||+...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999764
No 465
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.86 E-value=0.00044 Score=47.31 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999754
No 466
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.86 E-value=0.00078 Score=45.72 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999753
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00074 Score=55.33 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCChHHHHHHHHHhc
Q 030477 9 RPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
+-++.|.|++||||||+.+.|+.-+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578999999999999999998743
No 468
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.85 E-value=0.00082 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.++..+.|.|+||+||||+.++|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999987
No 469
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.00077 Score=45.70 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4468999999999999999999764
No 470
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.85 E-value=0.0006 Score=47.70 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999999753
No 471
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.85 E-value=0.00042 Score=56.84 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
-+.|+|.|++||||||+.+.|+..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCeEEEECCCCChHHHHHHHHhCC
Confidence 356999999999999999999764
No 472
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.85 E-value=0.0005 Score=48.00 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
....|+|.|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999653
No 473
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.85 E-value=0.00063 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALA 30 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La 30 (176)
.++..|+|.|.+||||||+++.+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 467789999999999999999984
No 474
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.84 E-value=0.00077 Score=55.61 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=20.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~l 33 (176)
...+.+|.||||||||++.-.+...+
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999998766655543
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.84 E-value=0.00056 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
...+.|+|.|.+|+||||+...|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3557899999999999999999954
No 476
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.00047 Score=47.64 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999754
No 477
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.83 E-value=0.00068 Score=47.05 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.0
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+...|...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45668999999999999999999653
No 478
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.83 E-value=0.0006 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|++|+||||+.+.|...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999763
No 479
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.82 E-value=0.00066 Score=47.11 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.4
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+.+.+..+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999988654
No 480
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.82 E-value=0.00057 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
+...|+|.|.+|+||||+...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 446899999999999999999965
No 481
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.81 E-value=0.00056 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999753
No 482
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.81 E-value=0.00058 Score=55.50 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=21.3
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
..++|+|+|++|+||||+++.++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 457899999999999999999864
No 483
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.81 E-value=0.00099 Score=51.61 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 5 SKRSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 5 ~~~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+..++..+.|.|++|+||||+++.|+..
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4567889999999999999999999774
No 484
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.80 E-value=0.00058 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+.++|+||+|+||||+++.|++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999985
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.80 E-value=0.00078 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.6
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
.+...|+|.|.+|+||||+...|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 35578999999999999999999764
No 486
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.80 E-value=0.00059 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999764
No 487
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.79 E-value=8.3e-05 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.0
Q ss_pred eEEEECCCCCChHHHHHHHHHhc
Q 030477 11 NILVTGTPGTGKTTTSTALAEST 33 (176)
Q Consensus 11 ~I~l~G~~GsGKSTla~~La~~l 33 (176)
++.|.||+||||||+.++|+--+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999998755
No 488
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.79 E-value=0.00076 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|.|.|+||+||||+.+.|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4458999999999999999999653
No 489
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.78 E-value=0.00087 Score=46.20 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3468999999999999999999764
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.78 E-value=0.00079 Score=61.65 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.1
Q ss_pred CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477 6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG 41 (176)
Q Consensus 6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~ 41 (176)
+.++..|+|+||||+||||+|.+++... .+.|++..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 4578899999999999999999997764 24466655
No 491
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.78 E-value=0.00075 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3458999999999999999999764
No 492
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.77 E-value=0.00076 Score=49.72 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999664
No 493
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.77 E-value=0.00035 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=11.2
Q ss_pred CCCeEEEECCCCCChHHHHHHHHH
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
....|+|.|.+|+||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999864
No 494
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.00055 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999763
No 495
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.76 E-value=0.00058 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred CeEEEECCCCCChHHHHHHHHH
Q 030477 10 PNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 10 ~~I~l~G~~GsGKSTla~~La~ 31 (176)
..|+|.|++|+||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999864
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.001 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHh
Q 030477 8 SRPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 8 ~~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
+...|+|.|.+|+||||+...|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999764
No 497
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.75 E-value=0.00095 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.++.+++|+||.||||||+.+.++-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3567899999999999999999975
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.73 E-value=0.00095 Score=57.38 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.8
Q ss_pred CCCCeEEEECCCCCChHHHHHHHHH
Q 030477 7 RSRPNILVTGTPGTGKTTTSTALAE 31 (176)
Q Consensus 7 ~~~~~I~l~G~~GsGKSTla~~La~ 31 (176)
.++.++.|.|+.||||||+.+.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999983
No 499
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.71 E-value=0.00093 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.||+||||+.+.|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999763
No 500
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.71 E-value=0.00077 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHh
Q 030477 9 RPNILVTGTPGTGKTTTSTALAES 32 (176)
Q Consensus 9 ~~~I~l~G~~GsGKSTla~~La~~ 32 (176)
...|+|.|.+|+||||+.+.|...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999753
Done!