BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030478
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
Length = 160
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 91/164 (55%), Gaps = 15/164 (9%)
Query: 12 KMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLV 71
K+L G D ED E S +L+ R+ GF CF++GI C+LL ++
Sbjct: 6 KVLSGQDTEDRSGLSEVVEAS-----------SLSWSTRIKGFIACFAIGILCSLLGTVL 54
Query: 72 FFNPIK----FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALF 127
+ P K F + +TFGN+ S+GST FL+GP +Q+ M +P R+ AT + + + L
Sbjct: 55 LWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLC 114
Query: 128 SALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLAC 171
SA + HNK L L+ IL+ AL WYSLS+IPFAR V K C
Sbjct: 115 SAFWWHNKGLALIFCILQSLALTWYSLSFIPFARDAVKKCFAVC 158
>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1
Length = 159
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 16/165 (9%)
Query: 12 KMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLV 71
K+L G D ED E S +L+ R+ GF CF++GI C++L L+
Sbjct: 6 KVLSGQDTEDRSGLSEVVEAS-----------SLSWGTRIKGFIACFALGILCSVLGTLL 54
Query: 72 FFNPIK----FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALF 127
+ P K F + +T GN++S+GST FL+GP +Q+ M +P R+ AT + + + L
Sbjct: 55 LWVPRKGLGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTLC 114
Query: 128 SALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACF 172
SA ++ NK L L+ IL+ AL WYSLSYIP+AR V K C
Sbjct: 115 SA-FLWNKGLALIFCILQSLALTWYSLSYIPYARDAVKKCFAVCL 158
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1
Length = 159
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 22/170 (12%)
Query: 1 MEKMNHAFEKMKMLVGMDVEDEE-SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
MEK+ ++L G D E++ +A D++S +F RL FAICF
Sbjct: 1 MEKLR------RVLSGQDDEEQGLTAQVLDASSLSF------------NTRLKWFAICFV 42
Query: 60 VGIFCTLLSLLVFFNP--IK-FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATA 116
G+F ++L + + P IK F + +T GNL +L ST FL+GP +Q+ M + R+ AT
Sbjct: 43 CGVFFSILGTGLLWLPGGIKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATI 102
Query: 117 IYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSK 166
+ + I L +AL+ H K L +L IL+F ++ WYSLSYIP+AR V K
Sbjct: 103 VMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLSYIPYARDAVIK 152
>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2
SV=1
Length = 159
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 22/170 (12%)
Query: 1 MEKMNHAFEKMKMLVGMDVEDEE-SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
MEK+ ++L G D E++ +A D++S +F RL F ICF
Sbjct: 1 MEKLR------RVLSGQDDEEQGLTAQVLDASSLSF------------NTRLKWFVICFV 42
Query: 60 VGIFCTLLS--LLVFFNPIK-FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATA 116
GIF ++L LL N +K F + +T GNL +L ST FL+GP +Q+ M + R+ AT
Sbjct: 43 AGIFFSILGTGLLWLPNGVKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATI 102
Query: 117 IYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSK 166
I + ++ L +AL+ K L LL IL+F ++ WYSLSYIP+AR V K
Sbjct: 103 IMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAVLK 152
>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2 SV=1
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 22/170 (12%)
Query: 1 MEKMNHAFEKMKMLVGMDVEDEE-SAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFS 59
MEK+ ++L G D E++ +A D++S +F RL F ICF
Sbjct: 1 MEKLR------RVLSGQDDEEQGLTAQVLDASSLSF------------NTRLKWFVICFV 42
Query: 60 VGIFCTLLS--LLVFFNPIK-FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATA 116
GIF + L LL N +K F + +T GNL +L ST FL+GP +Q+ M + R+ AT
Sbjct: 43 AGIFFSFLGTGLLWLPNGMKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATI 102
Query: 117 IYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSK 166
I + ++ L +AL+ K L LL IL+F ++ WYSLSYIP+AR V K
Sbjct: 103 IMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAVLK 152
>sp|Q4FZV2|SFT2B_RAT Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2
SV=1
Length = 157
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 12 KMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLV 71
K+L G D ED E +S +L+ R+ GF +CF++GI C+LL L+
Sbjct: 6 KVLSGQDTEDRSGLSEVVESS-----------SLSWSTRIKGFIVCFALGILCSLLGTLL 54
Query: 72 FFNPIK--FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSA 129
+ K F + +T GN+ S+GST FL+GP +Q+ M +P R+ AT + + ++ L SA
Sbjct: 55 LWVSRKGLFAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIATILVLLFFVLTLCSA 114
Query: 130 LYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLAC 171
++ NK L L+ IL+ AL WYSLSYIP+AR V K C
Sbjct: 115 -FLWNKGLALIFCILQSLALTWYSLSYIPYARDAVKKCFAVC 155
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
Length = 215
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 51 LYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPA 110
L G CF++ CT L ++ P KFG+ +T G+LL + + L+GP + +
Sbjct: 88 LLGATACFTL---CTFLFPVLAAKPRKFGLLWTMGSLLFVLAFGVLMGPLAYLKHLTARE 144
Query: 111 RIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFA 160
R+ + + A+ + ++ A + N +LT+ +LE A+I+Y++SY PF
Sbjct: 145 RLPFSMFFFATCFMTIYFAAFSKNTVLTITCALLELVAVIYYAISYFPFG 194
>sp|Q2NKV8|GOT1A_BOVIN Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1
Length = 132
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 61 GIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIA 120
GIF L +L++F+ + FGNLL L + +IG +R + + T+ ++
Sbjct: 18 GIFFILFGMLLYFDSV----LLAFGNLLFLTGLSLIIGLRRTFSFFFQRHKFKGTSFFLG 73
Query: 121 SMIIAL 126
++I L
Sbjct: 74 GVVIVL 79
>sp|P24010|COX1_BACSU Cytochrome c oxidase subunit 1 OS=Bacillus subtilis (strain 168)
GN=ctaD PE=3 SV=3
Length = 622
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 90 LGSTAFLIGPKRQVTMMLDPARIYATAIY-IASMIIALFSALYVHNKLLTLLALILEFGA 148
+G F++ T L P A AI+ +A+M IA+ + + + N LLT+ +++
Sbjct: 288 IGFLGFMVWVHHMFTTGLGPI---ANAIFAVATMAIAIPTGIKIFNWLLTIWGGNVKYTT 344
Query: 149 LIWYSLSYIP-FARSMVSKIMLAC 171
+ Y++S+IP F V+ +MLA
Sbjct: 345 AMLYAVSFIPSFVLGGVTGVMLAA 368
>sp|Q9NR82|KCNQ5_HUMAN Potassium voltage-gated channel subfamily KQT member 5 OS=Homo
sapiens GN=KCNQ5 PE=1 SV=3
Length = 932
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 110 ARIYATAIYI---ASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYI 157
A IY +++ +I+++FS + H KL + LILEF ++ + L +I
Sbjct: 126 AFIYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFI 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,399,241
Number of Sequences: 539616
Number of extensions: 1983879
Number of successful extensions: 7481
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7464
Number of HSP's gapped (non-prelim): 23
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)