Query 030478
Match_columns 176
No_of_seqs 112 out of 381
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 14:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2887 Membrane protein invol 100.0 3.6E-51 7.8E-56 330.3 16.7 169 1-175 1-174 (175)
2 PF04178 Got1: Got1/Sft2-like 100.0 8.9E-35 1.9E-39 222.7 14.1 114 56-170 5-118 (118)
3 COG5102 SFT2 Membrane protein 100.0 1.3E-29 2.8E-34 205.0 10.8 131 42-172 59-193 (201)
4 KOG1743 Ferric reductase-like 93.2 0.13 2.7E-06 40.7 3.9 109 57-169 13-132 (137)
5 COG5120 GOT1 Membrane protein 92.7 1.8 3.8E-05 33.7 9.4 109 60-174 16-128 (129)
6 PF13347 MFS_2: MFS/sugar tran 75.9 45 0.00098 29.3 10.9 117 31-152 210-333 (428)
7 PRK11588 hypothetical protein; 72.0 65 0.0014 30.8 11.4 52 90-146 353-409 (506)
8 PF06738 DUF1212: Protein of u 69.2 56 0.0012 26.0 11.4 21 36-56 91-112 (193)
9 PF11026 DUF2721: Protein of u 66.9 34 0.00073 26.3 7.1 85 3-96 22-115 (130)
10 PF04647 AgrB: Accessory gene 61.9 78 0.0017 25.0 9.9 15 93-107 114-128 (185)
11 PF13038 DUF3899: Domain of un 58.4 18 0.00038 25.9 3.9 20 2-21 28-47 (92)
12 TIGR02908 CoxD_Bacillus cytoch 57.9 77 0.0017 24.3 7.4 56 100-155 14-77 (110)
13 TIGR01666 YCCS hypothetical me 50.6 2.6E+02 0.0057 27.7 14.8 42 46-87 52-93 (704)
14 PF05915 DUF872: Eukaryotic pr 50.0 67 0.0015 24.6 6.1 22 53-74 46-67 (115)
15 PF10277 Frag1: Frag1/DRAM/Sfk 48.4 1.3E+02 0.0029 23.6 9.8 79 77-156 123-205 (215)
16 PF04156 IncA: IncA protein; 48.3 97 0.0021 24.6 7.1 24 46-70 1-24 (191)
17 PF14145 YrhK: YrhK-like prote 48.1 76 0.0017 21.4 5.5 43 56-102 10-53 (59)
18 TIGR02587 putative integral me 47.5 1.2E+02 0.0026 26.8 7.9 77 56-134 149-240 (271)
19 KOG0569 Permease of the major 47.1 2E+02 0.0043 27.3 9.8 25 2-26 216-240 (485)
20 PRK15033 tricarballylate utili 47.1 2.4E+02 0.0052 26.2 11.4 85 76-161 272-360 (389)
21 PF09622 DUF2391: Putative int 40.9 1.2E+02 0.0025 26.7 6.9 27 106-132 208-234 (267)
22 PF09323 DUF1980: Domain of un 39.1 2E+02 0.0043 23.1 7.6 47 53-99 3-53 (182)
23 PRK10582 cytochrome o ubiquino 38.8 1.7E+02 0.0038 22.2 7.1 45 110-154 14-66 (109)
24 PF10754 DUF2569: Protein of u 38.3 1.9E+02 0.0041 22.5 9.7 23 48-70 4-26 (149)
25 KOG1688 Golgi proteins involve 37.3 1.7E+02 0.0037 24.5 6.9 61 44-114 113-175 (188)
26 KOG2592 Tumor differentially e 37.1 2.1E+02 0.0046 26.8 8.2 36 54-89 79-129 (426)
27 TIGR00378 cax calcium/proton e 35.8 1.3E+02 0.0029 26.7 6.7 27 84-110 89-115 (349)
28 PF11700 ATG22: Vacuole efflux 35.3 3.1E+02 0.0066 25.5 9.1 50 101-150 268-332 (477)
29 PF10031 DUF2273: Small integr 33.7 1.2E+02 0.0027 19.9 4.6 39 106-144 3-41 (51)
30 TIGR01667 YCCS_YHJK integral m 33.6 4.8E+02 0.01 25.8 11.5 52 46-99 52-103 (701)
31 PF13150 DUF3989: Protein of u 33.4 68 0.0015 23.3 3.6 24 37-60 13-37 (85)
32 PF10131 PTPS_related: 6-pyruv 31.6 4.9E+02 0.011 25.2 10.6 57 107-165 255-314 (616)
33 TIGR02847 CyoD cytochrome o ub 31.0 2.2E+02 0.0048 21.1 6.9 45 111-155 4-56 (96)
34 PF02990 EMP70: Endomembrane p 30.9 3.1E+02 0.0067 25.8 8.5 65 51-116 261-333 (521)
35 COG2917 Intracellular septatio 30.7 3.2E+02 0.0069 22.8 8.7 69 77-147 77-167 (180)
36 PLN02953 phosphatidate cytidyl 30.7 4.5E+02 0.0098 24.6 10.4 6 47-52 98-103 (403)
37 PHA02764 hypothetical protein; 30.2 2.7E+02 0.0058 25.8 7.5 86 76-167 175-262 (399)
38 TIGR00927 2A1904 K+-dependent 29.6 1.3E+02 0.0027 31.5 5.9 16 53-68 933-948 (1096)
39 TIGR02484 CitB CitB domain pro 29.4 4.6E+02 0.0099 24.2 11.4 81 77-161 253-341 (372)
40 PF11368 DUF3169: Protein of u 29.1 3.5E+02 0.0075 22.7 13.0 21 48-68 5-25 (248)
41 PF05977 MFS_3: Transmembrane 29.1 4.9E+02 0.011 24.5 11.0 42 74-119 252-293 (524)
42 PF04235 DUF418: Protein of un 29.0 2.7E+02 0.0058 21.4 11.6 20 50-69 17-36 (163)
43 PF11085 YqhR: Conserved membr 29.0 3.3E+02 0.0073 22.5 11.3 114 41-156 13-154 (173)
44 PF12676 DUF3796: Protein of u 27.9 1.9E+02 0.0041 22.2 5.4 55 108-162 53-111 (118)
45 COG4267 Predicted membrane pro 27.6 5.3E+02 0.012 24.4 13.5 84 75-163 132-218 (467)
46 PRK01100 putative accessory ge 27.5 3.6E+02 0.0077 22.3 10.9 20 147-166 178-197 (210)
47 PF03248 Rer1: Rer1 family; I 27.2 2E+02 0.0043 23.8 5.8 18 97-114 149-166 (176)
48 PF03729 DUF308: Short repeat 26.6 1.8E+02 0.0039 18.6 7.7 36 60-95 2-39 (72)
49 PF03083 MtN3_slv: Sugar efflu 26.1 45 0.00097 23.2 1.6 75 83-159 2-82 (87)
50 PF03620 IBV_3C: IBV 3C protei 25.7 2.4E+02 0.0053 20.9 5.3 51 107-161 9-59 (93)
51 PF10003 DUF2244: Integral mem 24.7 3.3E+02 0.0071 21.0 6.7 20 41-60 3-22 (140)
52 KOG4320 Uncharacterized conser 24.3 2.9E+02 0.0063 24.2 6.4 111 44-162 88-219 (253)
53 COG4700 Uncharacterized protei 23.5 1.8E+02 0.004 25.0 5.0 58 118-175 6-73 (251)
54 PF11118 DUF2627: Protein of u 23.4 2.9E+02 0.0064 19.9 5.7 52 48-100 1-61 (77)
55 PF10003 DUF2244: Integral mem 23.0 3.1E+02 0.0068 21.1 6.0 27 125-151 25-51 (140)
56 PF04995 CcmD: Heme exporter p 22.7 1.7E+02 0.0037 18.4 3.7 25 127-151 3-27 (46)
57 COG5547 Small integral membran 21.8 2.8E+02 0.0061 19.2 5.5 38 110-147 7-44 (62)
58 COG4218 MtrF Tetrahydromethano 21.3 3.2E+02 0.0069 19.5 5.1 18 49-66 49-66 (73)
59 KOG1419 Voltage-gated K+ chann 20.5 3.9E+02 0.0084 26.4 7.0 63 95-157 73-143 (654)
60 PF14936 p53-inducible11: Tumo 20.1 88 0.0019 26.0 2.4 15 11-25 15-29 (179)
No 1
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-51 Score=330.31 Aligned_cols=169 Identities=43% Similarity=0.762 Sum_probs=156.0
Q ss_pred ChhhhHHHHHHHHHhCCCCcchhhhhhcCCCCcchhhhhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----hh
Q 030478 1 MEKMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQ-CTLTTKQRLYGFAICFSVGIFCTLLSLLVFF----NP 75 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l~----~p 75 (176)
|||.|+++++-+...|.++.|++ +|+++..+|.++. ++|||+||+++|++|++.|++|+.+|.+++. .|
T Consensus 1 md~l~~~~~~~~~~sg~d~~~~~------~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~ 74 (175)
T KOG2887|consen 1 MDKLRSARSANDVLSGQDPGDHQ------TEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSP 74 (175)
T ss_pred CchhhhhHhhhhcccCCCCCccc------cccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 89999999999988887765543 2456677777776 9999999999999999999999999988764 56
Q ss_pred HHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 030478 76 IKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLS 155 (176)
Q Consensus 76 ~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY~lS 155 (176)
+|||++||+||+++++|++||+||++|+|||++|+|+++|+.|++++++|+|+|+++||++|+++++++|++|++||++|
T Consensus 75 ~kFal~~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliwYslS 154 (175)
T KOG2887|consen 75 RKFALLYTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIWYSLS 154 (175)
T ss_pred ceeehhHHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhcccCC
Q 030478 156 YIPFARSMVSKIMLACFDTE 175 (176)
Q Consensus 156 yiP~G~~~l~~~~~~~~~~~ 175 (176)
||||||++++++.+++++.+
T Consensus 155 yiP~g~~gv~~~~s~~~~s~ 174 (175)
T KOG2887|consen 155 YIPFGRSGVSKLSSAFTSSL 174 (175)
T ss_pred hCcchhhHHHHHHHHHHHhc
Confidence 99999999999999998765
No 2
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=100.00 E-value=8.9e-35 Score=222.69 Aligned_cols=114 Identities=47% Similarity=0.815 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhH
Q 030478 56 ICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNK 135 (176)
Q Consensus 56 ~c~~~g~~~~~ls~~~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~~s~ 135 (176)
+|+++|.++.+++.++ .+|+|||++||+||+++++|++||+||++|+|+|++|+|+++|++|++|+++|+|+++++|++
T Consensus 5 ~~~~l~~~~~~~~~~~-~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~~~~~~~~~ 83 (118)
T PF04178_consen 5 ICFFLSLIFFFLGVLL-FFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLYFAFILKSY 83 (118)
T ss_pred HHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 4555665555555444 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhh
Q 030478 136 LLTLLALILEFGALIWYSLSYIPFARSMVSKIMLA 170 (176)
Q Consensus 136 ll~ll~~i~Q~~al~wY~lSyiP~G~~~l~~~~~~ 170 (176)
+++++++++|++|++||++||||+||+++++++++
T Consensus 84 ~l~llf~~~q~~al~wy~~s~iP~g~~~~~~~~~~ 118 (118)
T PF04178_consen 84 GLTLLFSIFQFPALIWYLLSYIPFGRPGLKKFFSM 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhcC
Confidence 99999999999999999999999999999998763
No 3
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.3e-29 Score=204.96 Aligned_cols=131 Identities=23% Similarity=0.412 Sum_probs=122.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHH
Q 030478 42 QCTLTTKQRLYGFAICFSVGIFCTLLSLLV----FFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAI 117 (176)
Q Consensus 42 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~----l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~ 117 (176)
.++||++||...|.+|+..+..|+.++.++ .++|+||.++||+||++++.+++++.||.+|+|+++++||++.+..
T Consensus 59 ~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s~~ 138 (201)
T COG5102 59 EFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSW 138 (201)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchhHH
Confidence 469999999999999988888888666543 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhcc
Q 030478 118 YIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACF 172 (176)
Q Consensus 118 yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY~lSyiP~G~~~l~~~~~~~~ 172 (176)
|+++..+|+|+++..|+++|++.|+++|++++++|.++|+|+|.++++...++.+
T Consensus 139 ff~t~l~Tiy~~~k~k~t~L~i~f~~l~vvsfi~y~itffPfGt~gvs~~~sm~~ 193 (201)
T COG5102 139 FFGTTLLTIYVVLKYKRTLLNIAFCFLQVVSFIMYSITFFPFGTSGVSSIISMFF 193 (201)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876654
No 4
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=93.21 E-value=0.13 Score=40.70 Aligned_cols=109 Identities=19% Similarity=0.362 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHH----HHHHh
Q 030478 57 CFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALF----SALYV 132 (176)
Q Consensus 57 c~~~g~~~~~ls~~~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~----~al~~ 132 (176)
.-+.|.++++++..+++.-. +-++||++.+.+..++.|.++-+.-.++++|.-.|+.+....+.+++ ..+..
T Consensus 13 ~TgfG~ff~l~Gii~ffD~a----LLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~wPi~Gm~l 88 (137)
T KOG1743|consen 13 LTGFGVFFFLFGIILFFDKA----LLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFGWPIFGMIL 88 (137)
T ss_pred EechhHHHHHHHHHHHHhhH----HHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHhhHHHHHHH
Confidence 34567777777777665443 34569999999999999999999999999999999999999888875 34444
Q ss_pred hhHHHHHHHH-----HHHHHHHHH--HHHhcccchHHHHHHHHh
Q 030478 133 HNKLLTLLAL-----ILEFGALIW--YSLSYIPFARSMVSKIML 169 (176)
Q Consensus 133 ~s~ll~ll~~-----i~Q~~al~w--Y~lSyiP~G~~~l~~~~~ 169 (176)
-+|.+-+++- +++++--+= =.+-+.|+=|+-+.+.++
T Consensus 89 E~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl~~ 132 (137)
T KOG1743|consen 89 ETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRLAG 132 (137)
T ss_pred HHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHhcC
Confidence 5555444432 334332111 124577777777766543
No 5
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=92.66 E-value=1.8 Score=33.74 Aligned_cols=109 Identities=18% Similarity=0.421 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH----HHhhhH
Q 030478 60 VGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSA----LYVHNK 135 (176)
Q Consensus 60 ~g~~~~~ls~~~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~a----l~~~s~ 135 (176)
+|..++..+.++++.-. +-++||++.+.+...+.|..|-.--..+|+|+.-++.+.....+++|== +...+.
T Consensus 16 ~Gflffl~Gif~ffDra----Ll~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~~fp~~GF~~E~L 91 (129)
T COG5120 16 IGFLFFLVGIFLFFDRA----LLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYRFPMFGFLLETL 91 (129)
T ss_pred hhHHHHHHHHHHHhhhH----HHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544322 4567999999999999999887777889999999999999998888732 111221
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhcccC
Q 030478 136 LLTLLALILEFGALIWYSLSYIPFARSMVSKIMLACFDT 174 (176)
Q Consensus 136 ll~ll~~i~Q~~al~wY~lSyiP~G~~~l~~~~~~~~~~ 174 (176)
. ++...-.+.-.+--.+-..|+++..+.+..+.-.+|
T Consensus 92 G--~f~Lf~df~p~i~~fLRt~p~igp~idrl~g~~~~P 128 (129)
T COG5120 92 G--LFLLFRDFIPTIRTFLRTLPLIGPYIDRLLGRLMRP 128 (129)
T ss_pred H--HHHHHHHHHHHHHHHHHhccccchhHHhhhceecCC
Confidence 1 111111222222233455676666666655544443
No 6
>PF13347 MFS_2: MFS/sugar transport protein
Probab=75.90 E-value=45 Score=29.30 Aligned_cols=117 Identities=10% Similarity=-0.005 Sum_probs=57.2
Q ss_pred CCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHh
Q 030478 31 NSFAFIDDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLL-----VFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTM 105 (176)
Q Consensus 31 ~~~~~~~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~-----~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~ 105 (176)
+..++.++..+..+-..-+++.+...+..++......... .+-.+...+.+..++++..+.+..+. ++ +.+
T Consensus 210 ~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~-~~---l~~ 285 (428)
T PF13347_consen 210 KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLW-GR---LSK 285 (428)
T ss_pred cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH-HH---HHH
Confidence 3445555555555444444444444443333322221111 12245566666666666666554444 32 344
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHHHHHHHHHHHH
Q 030478 106 MLDPARIYATAIYIASMIIALFSALYV-HN-KLLTLLALILEFGALIWY 152 (176)
Q Consensus 106 m~~~~R~~~t~~yl~sl~~TL~~al~~-~s-~ll~ll~~i~Q~~al~wY 152 (176)
-++++| .....++...+..+...+.. ++ ..+.++.++..+..-..+
T Consensus 286 r~gk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~ 333 (428)
T PF13347_consen 286 RFGKKK-VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFF 333 (428)
T ss_pred Hcccee-ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccc
Confidence 445555 44555555555555555554 34 445555555555544443
No 7
>PRK11588 hypothetical protein; Provisional
Probab=71.95 E-value=65 Score=30.76 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=31.3
Q ss_pred HhhhhHhccHHHHHHhhc-----CCchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 030478 90 LGSTAFLIGPKRQVTMML-----DPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEF 146 (176)
Q Consensus 90 l~s~~FL~Gp~~q~k~m~-----~~~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~ 146 (176)
+.+.+++.|..+++.-++ +.....-|++|..+-.+. ..++.+..+...++|.
T Consensus 353 m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~-----~lp~~~~ai~m~i~~~ 409 (506)
T PRK11588 353 MLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAIS-----GLPDAVSAWFMLLFQS 409 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHH
Confidence 445677777777777777 555677777776653322 3445555555555554
No 8
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=69.22 E-value=56 Score=25.98 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=12.9
Q ss_pred hhhhcccC-CCCHHHHHHHHHH
Q 030478 36 IDDFNRQC-TLTTKQRLYGFAI 56 (176)
Q Consensus 36 ~~~~~~~~-~LS~~qRi~gF~~ 56 (176)
+++.+... .-+++.++.++++
T Consensus 91 L~~I~~~~~~y~~~~~~l~~~l 112 (193)
T PF06738_consen 91 LDEIDREPPRYPPWLVILAAGL 112 (193)
T ss_pred HHHHhhCCCCCCHHHHHHHHHH
Confidence 66766555 6677666655443
No 9
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=66.86 E-value=34 Score=26.34 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhCCCCcchhhhhhcCCCCcchhhhhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHh-h-------
Q 030478 3 KMNHAFEKMKMLVGMDVEDEESAVENDSNSFAFIDDFNRQCTLTTKQRLYGFAI-CFSVGIFCTLLSLLVF-F------- 73 (176)
Q Consensus 3 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LS~~qRi~gF~~-c~~~g~~~~~ls~~~l-~------- 73 (176)
|..+..|+.|+.-...++++++ +++.. ..|--.|.++-|++.-++ +...+.++..++.+.+ .
T Consensus 22 Rl~ri~dR~R~L~~~~~~~~~~------~~~~~---~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~ 92 (130)
T PF11026_consen 22 RLARIVDRIRQLHDELRDAPDE------EERRL---RRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSID 92 (130)
T ss_pred HHHHHHHHHHHHHHHhccCCcc------hhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 6677888888887443332211 11111 223336666666665444 3334444444443322 2
Q ss_pred hhHHHHHHHhHHHHHHHhhhhHh
Q 030478 74 NPIKFGITFTFGNLLSLGSTAFL 96 (176)
Q Consensus 74 ~p~kFallyTlGsil~l~s~~FL 96 (176)
.+.--+++|..|-++.+.|...+
T Consensus 93 ~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 93 LSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 24445677777777776666544
No 10
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=61.87 E-value=78 Score=25.02 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=9.3
Q ss_pred hhHhccHHHHHHhhc
Q 030478 93 TAFLIGPKRQVTMML 107 (176)
Q Consensus 93 ~~FL~Gp~~q~k~m~ 107 (176)
.....+|...=++-.
T Consensus 114 ~i~~~aPv~~~~kpl 128 (185)
T PF04647_consen 114 IIIIYAPVDTPNKPL 128 (185)
T ss_pred HHHHhcccccccCcC
Confidence 455678876555544
No 11
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=58.37 E-value=18 Score=25.90 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHhCCCCcc
Q 030478 2 EKMNHAFEKMKMLVGMDVED 21 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~~~~~~ 21 (176)
|....++.++|.....+++.
T Consensus 28 d~~~ygfrr~~~~~~~~~~~ 47 (92)
T PF13038_consen 28 DGFSYGFRRLFRQIKKKKKK 47 (92)
T ss_pred HHHHHHHHHHHHHhcccchh
Confidence 45667778887777666543
No 12
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=57.88 E-value=77 Score=24.33 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=40.2
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHh
Q 030478 100 KRQVTMMLDPARIYATAIYIASMIIALFSALYVH--------NKLLTLLALILEFGALIWYSLS 155 (176)
Q Consensus 100 ~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~~--------s~ll~ll~~i~Q~~al~wY~lS 155 (176)
..|-|+--+++..-+.+.|+.|+++|+..-...- .....+++.++|+.-=+.|-+-
T Consensus 14 ~~~~~~~~~~~~k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I~~lAvvQi~VqL~yFLH 77 (110)
T TIGR02908 14 LEFQKAKNAEEMKKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFILLLAAVQVAFQLYYFMH 77 (110)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhee
Confidence 3455565666777799999999999987644322 1456778889999887777553
No 13
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=50.59 E-value=2.6e+02 Score=27.67 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHH
Q 030478 46 TTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNL 87 (176)
Q Consensus 46 S~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFallyTlGsi 87 (176)
+++.|++..+++.+.+.+-++..-++.-.|.-|+..-++.++
T Consensus 52 ~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf 93 (704)
T TIGR01666 52 RLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTF 93 (704)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567788877766554443333322333355555554444433
No 14
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=50.00 E-value=67 Score=24.56 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 030478 53 GFAICFSVGIFCTLLSLLVFFN 74 (176)
Q Consensus 53 gF~~c~~~g~~~~~ls~~~l~~ 74 (176)
.-+..+++|.++.+++.++...
T Consensus 46 la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 46 LAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666777777777665543
No 15
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=48.37 E-value=1.3e+02 Score=23.60 Aligned_cols=79 Identities=15% Similarity=0.060 Sum_probs=42.1
Q ss_pred HHHHHHhHHHHHHHhhhhHh--ccHH--HHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 030478 77 KFGITFTFGNLLSLGSTAFL--IGPK--RQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWY 152 (176)
Q Consensus 77 kFallyTlGsil~l~s~~FL--~Gp~--~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY 152 (176)
-+++++..+.+-...-+... .++. +.-+.. -.-|+..+++.+++.+...+.-...+++..-..+.+.|++..++.
T Consensus 123 ~a~~ff~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ai~Ew~~~~~~ 201 (215)
T PF10277_consen 123 GAVLFFVSSFIYMLLQTILSYRLGPHYSNKSRRS-FRLRLILLVISIICFISFIVFFILHNFYGAYSIFAIFEWVLVFSN 201 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchhHh-HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 44444444444444444333 3443 222222 224555566666666665555554444445677888898887776
Q ss_pred HHhc
Q 030478 153 SLSY 156 (176)
Q Consensus 153 ~lSy 156 (176)
.+-+
T Consensus 202 ~~f~ 205 (215)
T PF10277_consen 202 ILFF 205 (215)
T ss_pred HHHH
Confidence 6544
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.28 E-value=97 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 030478 46 TTKQRLYGFAICFSVGIFCTLLSLL 70 (176)
Q Consensus 46 S~~qRi~gF~~c~~~g~~~~~ls~~ 70 (176)
|+.+|+. -+++.++|+++...+..
T Consensus 1 s~~~~i~-~i~~iilgilli~~gI~ 24 (191)
T PF04156_consen 1 SKKQRII-SIILIILGILLIASGIA 24 (191)
T ss_pred ChhHHHH-HHHHHHHHHHHHHHHHH
Confidence 4556654 67788888886555544
No 17
>PF14145 YrhK: YrhK-like protein
Probab=48.12 E-value=76 Score=21.39 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHH-HhhhhHhccHHHH
Q 030478 56 ICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLS-LGSTAFLIGPKRQ 102 (176)
Q Consensus 56 ~c~~~g~~~~~ls~~~l~~p~kFallyTlGsil~-l~s~~FL~Gp~~q 102 (176)
+.-.+|.+++.++..+++.+. .++.|..+. ++|..|+.+|.-+
T Consensus 10 ~~d~~~~~~FliGSilfl~~~----~~~~g~wlFiiGS~~f~i~~~i~ 53 (59)
T PF14145_consen 10 VNDFIGGLLFLIGSILFLPES----LYTAGTWLFIIGSILFLIRPIIR 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444331 234454443 4556667777543
No 18
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=47.54 E-value=1.2e+02 Score=26.79 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHH-----Hhh-----hhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhc-----CCchhHHHHHHHH
Q 030478 56 ICFSVGIFCTLLSLL-----VFF-----NPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMML-----DPARIYATAIYIA 120 (176)
Q Consensus 56 ~c~~~g~~~~~ls~~-----~l~-----~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~-----~~~R~~~t~~yl~ 120 (176)
....+|.++...+.. .++ -|+..++ .+.|+...=...|=.|+..|=|+-- +..-.-+...|++
T Consensus 149 ~~~~~GAlf~afnIAPTdEv~~la~~~~~~~~~~l--i~~SL~i~y~iVf~~gF~~q~~~~~~~g~~q~~~~eT~~~Y~v 226 (271)
T TIGR02587 149 FAMLVGALFLSFNIAPTEEVPLIAYKISPPHIFAL--ILASLVIMHAFVYQLGFRGQHKRRQGKGIFQRFLRETTIGYLV 226 (271)
T ss_pred HHHHHHHHHhccccCChhHHHHHHhcCChHHHHHH--HHHHHHHHHHHhhccccCccccccccCCchhccHHHHHHHHHH
Confidence 345667776666632 121 2444444 5678888888889999998877643 3344557789999
Q ss_pred HHHHHHHHHHHhhh
Q 030478 121 SMIIALFSALYVHN 134 (176)
Q Consensus 121 sl~~TL~~al~~~s 134 (176)
|+....|.-..++.
T Consensus 227 sL~~s~~mL~~F~r 240 (271)
T TIGR02587 227 SLLASAYMLWTFQR 240 (271)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999888777665
No 19
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=47.13 E-value=2e+02 Score=27.26 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHhCCCCcchhhhh
Q 030478 2 EKMNHAFEKMKMLVGMDVEDEESAV 26 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~~~~~~~~~~~ 26 (176)
++.++|-.++|.+-|..+++++.|+
T Consensus 216 ~~~~~A~~sl~~y~G~~~~~~~~e~ 240 (485)
T KOG0569|consen 216 GDEEEARKALKFYRGKEDVEAEIEE 240 (485)
T ss_pred CCHHHHHHHHHHHhCCCcchhHHHH
Confidence 4667888889988888765544433
No 20
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=47.06 E-value=2.4e+02 Score=26.16 Aligned_cols=85 Identities=16% Similarity=0.045 Sum_probs=41.3
Q ss_pred HHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHH
Q 030478 76 IKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPAR-IYATAIYIASMIIALFSALY---VHNKLLTLLALILEFGALIW 151 (176)
Q Consensus 76 ~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R-~~~t~~yl~sl~~TL~~al~---~~s~ll~ll~~i~Q~~al~w 151 (176)
....++.++|.|..+.+..=+.--+...+..-...+ ...=-.+++.+.+|-.+.+. ++.+-...+...+ -+..++
T Consensus 272 s~~klLg~vGgi~LliG~~gl~~~~~R~d~~~~~~~~~~~D~~Fl~lL~lv~~TGL~~~~~R~t~am~~~l~l-HL~~V~ 350 (389)
T PRK15033 272 SLPVLLGTLGGIGLLIGPAGLLWLNLRRHPLHGDAAQKPMDRGFIALLFLTSASGLALLAGRDTSAMALLLAL-HLGVVM 350 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH-HHHHHH
Confidence 457788999999888874332222222222111111 01112244444444444443 3333222222333 344566
Q ss_pred HHHhcccchH
Q 030478 152 YSLSYIPFAR 161 (176)
Q Consensus 152 Y~lSyiP~G~ 161 (176)
..+-|.||++
T Consensus 351 ~LF~~lPysK 360 (389)
T PRK15033 351 ALFLTLPYGK 360 (389)
T ss_pred HHHHHhhHHH
Confidence 7778899986
No 21
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=40.92 E-value=1.2e+02 Score=26.71 Aligned_cols=27 Identities=11% Similarity=0.380 Sum_probs=16.7
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHh
Q 030478 106 MLDPARIYATAIYIASMIIALFSALYV 132 (176)
Q Consensus 106 m~~~~R~~~t~~yl~sl~~TL~~al~~ 132 (176)
..+.......+.|++|++..++.-..+
T Consensus 208 ~~~~~l~~tivsY~isl~vsl~~L~~f 234 (267)
T PF09622_consen 208 IFQRFLRFTIVSYLISLLVSLLMLWFF 234 (267)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444456688888887766654444
No 22
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=39.11 E-value=2e+02 Score=23.07 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHhHHHHHHHhhhhHhccH
Q 030478 53 GFAICFSVGIFCTLLSL----LVFFNPIKFGITFTFGNLLSLGSTAFLIGP 99 (176)
Q Consensus 53 gF~~c~~~g~~~~~ls~----~~l~~p~kFallyTlGsil~l~s~~FL~Gp 99 (176)
.+++.++.|++++-+-. ...++|+-..+++.-+-++.+.+..-+..-
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~ 53 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWRW 53 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665554432 345799988888888888777776555543
No 23
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=38.75 E-value=1.7e+02 Score=22.18 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh------h--hHHHHHHHHHHHHHHHHHHHH
Q 030478 110 ARIYATAIYIASMIIALFSALYV------H--NKLLTLLALILEFGALIWYSL 154 (176)
Q Consensus 110 ~R~~~t~~yl~sl~~TL~~al~~------~--s~ll~ll~~i~Q~~al~wY~l 154 (176)
++.-+.+.|+.|+++|...-... + .....+++.++|++.-+.|-+
T Consensus 14 s~k~yviGFiLSliLT~i~F~lv~~~~~~~~~~~~~i~~lA~vQi~VqL~~FL 66 (109)
T PRK10582 14 SVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFL 66 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567789999999997654332 1 134566778899998888865
No 24
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=38.27 E-value=1.9e+02 Score=22.50 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030478 48 KQRLYGFAICFSVGIFCTLLSLL 70 (176)
Q Consensus 48 ~qRi~gF~~c~~~g~~~~~ls~~ 70 (176)
.||+-|+.+..++|++...++..
T Consensus 4 ~~~IGGWL~lp~iglils~l~~~ 26 (149)
T PF10754_consen 4 PQGIGGWLILPAIGLILSPLSTS 26 (149)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 37888999999999988877754
No 25
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.34 E-value=1.7e+02 Score=24.48 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHH
Q 030478 44 TLTTKQRLYGFAICFSVGIFCTLLSLL--VFFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYA 114 (176)
Q Consensus 44 ~LS~~qRi~gF~~c~~~g~~~~~ls~~--~l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~ 114 (176)
.|..-.=.....=|+++|.+|.+.+.+ ..+.|---+ | -...|..--++|++||.+=+-.++
T Consensus 113 RLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~--Y--------~i~lf~ltmrRqI~HMiKyrY~Pf 175 (188)
T KOG1688|consen 113 RLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLM--Y--------FIVLFFLTMRRQIAHMIKYRYIPF 175 (188)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHH--H--------HHHHHHHHHHHHHHHHHhhccccc
Confidence 444443344455577788888888765 234443211 1 224455667899999987554443
No 26
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=37.08 E-value=2.1e+02 Score=26.78 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh---------------hhHHHHHHHhHHHHHH
Q 030478 54 FAICFSVGIFCTLLSLLVFF---------------NPIKFGITFTFGNLLS 89 (176)
Q Consensus 54 F~~c~~~g~~~~~ls~~~l~---------------~p~kFallyTlGsil~ 89 (176)
.=+||+.++++++++++++. .|-||.+.+.++-..+
T Consensus 79 yR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~F 129 (426)
T KOG2592|consen 79 YRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSF 129 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheE
Confidence 34699999999999988752 3568888876654333
No 27
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=35.83 E-value=1.3e+02 Score=26.71 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhHhccHHHHHHhhcCCc
Q 030478 84 FGNLLSLGSTAFLIGPKRQVTMMLDPA 110 (176)
Q Consensus 84 lGsil~l~s~~FL~Gp~~q~k~m~~~~ 110 (176)
+.|++.+.+.+++.||.++=++.++++
T Consensus 89 i~NllLilGls~liggl~~~~q~~~~~ 115 (349)
T TIGR00378 89 LGNLLLVLGLCFFFGGLNYKQQTFNQT 115 (349)
T ss_pred HHhHHHHHHHHHHHhccccceeecCHH
Confidence 466778899999999998777777665
No 28
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=35.34 E-value=3.1e+02 Score=25.49 Aligned_cols=50 Identities=10% Similarity=0.323 Sum_probs=29.6
Q ss_pred HHHHhhcCC-chhHHHHHHHHHHH------------HHHHHH--HHhhhHHHHHHHHHHHHHHHH
Q 030478 101 RQVTMMLDP-ARIYATAIYIASMI------------IALFSA--LYVHNKLLTLLALILEFGALI 150 (176)
Q Consensus 101 ~q~k~m~~~-~R~~~t~~yl~sl~------------~TL~~a--l~~~s~ll~ll~~i~Q~~al~ 150 (176)
++++++++. +|...+..|+++-+ .++|.. +.+...-+.++..++|+.|.+
T Consensus 268 ~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~ 332 (477)
T PF11700_consen 268 KRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAII 332 (477)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Confidence 466666644 55666666666533 234444 223445578888888887754
No 29
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=33.66 E-value=1.2e+02 Score=19.87 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=25.9
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 030478 106 MLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALIL 144 (176)
Q Consensus 106 m~~~~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~ 144 (176)
..++.|-...-.-++-+++.++..+.+-++++++++..+
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~GF~~tl~i~~~~~i 41 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFGFWKTLFILLFAAI 41 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566677777778877788887777654
No 30
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=33.58 E-value=4.8e+02 Score=25.78 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHhhhhHhccH
Q 030478 46 TTKQRLYGFAICFSVGIFCTLLSLLVFFNPIKFGITFTFGNLLSLGSTAFLIGP 99 (176)
Q Consensus 46 S~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFallyTlGsil~l~s~~FL~Gp 99 (176)
+++.|++..+++...+.+-++..-++.-.|.-|+..-++ ..+..+..--.|+
T Consensus 52 ~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~--~tf~~~mlga~G~ 103 (701)
T TIGR01667 52 RLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTL--LTFGFILLGALGQ 103 (701)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHhhh
Confidence 466788777665554433333333333344444443322 2333334444555
No 31
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=33.37 E-value=68 Score=23.33 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=15.7
Q ss_pred hhhcccC-CCCHHHHHHHHHHHHHH
Q 030478 37 DDFNRQC-TLTTKQRLYGFAICFSV 60 (176)
Q Consensus 37 ~~~~~~~-~LS~~qRi~gF~~c~~~ 60 (176)
+.+...| .||.+||+..-+..+++
T Consensus 13 ~~Lr~~c~~Lsp~~R~~vvl~ml~~ 37 (85)
T PF13150_consen 13 DRLRRYCGRLSPKQRLRVVLVMLVL 37 (85)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445566 99999998755444443
No 32
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=31.59 E-value=4.9e+02 Score=25.24 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=37.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 030478 107 LDPARIYATAIYIASMIIALFSALYVHN---KLLTLLALILEFGALIWYSLSYIPFARSMVS 165 (176)
Q Consensus 107 ~~~~R~~~t~~yl~sl~~TL~~al~~~s---~ll~ll~~i~Q~~al~wY~lSyiP~G~~~l~ 165 (176)
.-|-|...-...+.+++.++...-..++ .+++++.++ .+.-.|-...++++..+-..
T Consensus 255 ~~p~RFl~i~~~~~~ll~a~~~~~~~~k~~~~l~~i~l~v--~~~~~~~~~~~~~~~~~~~~ 314 (616)
T PF10131_consen 255 QFPWRFLSIASVFLALLGALLLWRILKKSRAVLLVILLAV--LIVDSWPSFNYIGYESKPLW 314 (616)
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHhhhhcCCCCchH
Confidence 4478887777777888888877777776 444444444 55556666777776654433
No 33
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=30.97 E-value=2.2e+02 Score=21.08 Aligned_cols=45 Identities=7% Similarity=0.085 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-h-----h--hHHHHHHHHHHHHHHHHHHHHh
Q 030478 111 RIYATAIYIASMIIALFSALY-V-----H--NKLLTLLALILEFGALIWYSLS 155 (176)
Q Consensus 111 R~~~t~~yl~sl~~TL~~al~-~-----~--s~ll~ll~~i~Q~~al~wY~lS 155 (176)
..-+.+.|+.|+++|...=.. . + .+...+.+.++|+.--+.|-+-
T Consensus 4 ~k~yviGFiLsliLT~i~F~~v~~~~~~~~~~~~~i~~~A~iQi~vqL~~FlH 56 (96)
T TIGR02847 4 LKSYLIGFVLSVILTAIPFGLVMSGTLSKGLTLVIIIVLAVVQILVHLVFFLH 56 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344668899999999654332 2 1 1445667788999988887653
No 34
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=30.86 E-value=3.1e+02 Score=25.80 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHhHHHHHHHhhhhHhccHHH-HHHhhcCCchhHHHH
Q 030478 51 LYGFAICFSVGIFCTLLSLLV-------FFNPIKFGITFTFGNLLSLGSTAFLIGPKR-QVTMMLDPARIYATA 116 (176)
Q Consensus 51 i~gF~~c~~~g~~~~~ls~~~-------l~~p~kFallyTlGsil~l~s~~FL~Gp~~-q~k~m~~~~R~~~t~ 116 (176)
...+.++.+.|+=+.++++.. ...|..=+-+.|.+-+ +.+-+++..|..+ .+-++++.+|+....
T Consensus 261 ~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~-~y~~~~~iaGy~S~~~yk~~~g~~W~~~~ 333 (521)
T PF02990_consen 261 PMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAII-LYALTSFIAGYVSARLYKSFGGKKWKKNS 333 (521)
T ss_pred chHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHH-HHHHHhhHHHHHHHHHHHHcCCCceeehh
Confidence 345777777777666655432 2356544444443332 3333446666652 344555665555433
No 35
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=30.67 E-value=3.2e+02 Score=22.79 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=50.3
Q ss_pred HHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCc-----------hhHHHHHHHHHHHHHHHHHHHh-----------hh
Q 030478 77 KFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPA-----------RIYATAIYIASMIIALFSALYV-----------HN 134 (176)
Q Consensus 77 kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~-----------R~~~t~~yl~sl~~TL~~al~~-----------~s 134 (176)
|=.+.|.+..+..++|-.+..-| -+|.|++++ .+.-.+.++.+-++-+|.+... .+
T Consensus 77 K~TIi~~lFa~~Llgs~~~~~k~--lik~~lg~~l~Lp~~~W~~Ln~~W~~FFlf~ai~N~yV~~~fs~d~WV~FKvfG~ 154 (180)
T COG2917 77 KPTIIYWLFALVLLGSQFLFKKP--LIKRMLGKELQLPEEVWRKLNLRWALFFLFCAIANEYVARNFSTDTWVNFKVFGL 154 (180)
T ss_pred eHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeehhhh
Confidence 45678888888888766666655 477777654 2235677888889999998764 24
Q ss_pred HHHHHHHHHHHHH
Q 030478 135 KLLTLLALILEFG 147 (176)
Q Consensus 135 ~ll~ll~~i~Q~~ 147 (176)
..+++++.++|-.
T Consensus 155 ~~ltlvf~l~q~~ 167 (180)
T COG2917 155 TPLTLIFTLIQGP 167 (180)
T ss_pred hHHHHHHHHHHHH
Confidence 6789999999975
No 36
>PLN02953 phosphatidate cytidylyltransferase
Probab=30.66 E-value=4.5e+02 Score=24.55 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=4.2
Q ss_pred HHHHHH
Q 030478 47 TKQRLY 52 (176)
Q Consensus 47 ~~qRi~ 52 (176)
.++|++
T Consensus 98 l~~RIi 103 (403)
T PLN02953 98 LKKRVI 103 (403)
T ss_pred HHHHHH
Confidence 368886
No 37
>PHA02764 hypothetical protein; Provisional
Probab=30.21 E-value=2.7e+02 Score=25.81 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=51.6
Q ss_pred HHHHHHHhHHHHHH--HhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 030478 76 IKFGITFTFGNLLS--LGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYS 153 (176)
Q Consensus 76 ~kFallyTlGsil~--l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY~ 153 (176)
+.|.+..|+-+.+. +....|..-| .+...-.+..+.-+-+.|++|-..|.....+..-+=+.+++++ +..||
T Consensus 175 ~~f~~snt~~~a~~~~l~~~~fi~a~-~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~sy~n~~il~~~----~~~w~- 248 (399)
T PHA02764 175 QNFTISNTLLSALLFDLSAFIFINAI-SYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDSYSNLNILFAL----MPIWF- 248 (399)
T ss_pred cceeehHHHHHHHHHHHHHHHHhccH-HHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHH-
Confidence 45555555555443 2334444555 3444334444445668899998888877766443336666665 88999
Q ss_pred HhcccchHHHHHHH
Q 030478 154 LSYIPFARSMVSKI 167 (176)
Q Consensus 154 lSyiP~G~~~l~~~ 167 (176)
.||.|-..+.-++.
T Consensus 249 ~~y~~~~~~~~srl 262 (399)
T PHA02764 249 FSYMPIANKIQSRL 262 (399)
T ss_pred HhheeeecchHHHH
Confidence 58999766554443
No 38
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=29.60 E-value=1.3e+02 Score=31.46 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 030478 53 GFAICFSVGIFCTLLS 68 (176)
Q Consensus 53 gF~~c~~~g~~~~~ls 68 (176)
+|.++|+.+++.+.+.
T Consensus 933 ~y~ltFi~SIiwIsi~ 948 (1096)
T TIGR00927 933 FFVITFLGSIMWIAMF 948 (1096)
T ss_pred eeeehHHHHHHHHHHH
Confidence 5667777777665544
No 39
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=29.41 E-value=4.6e+02 Score=24.20 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHhHHHHHHHhhhhHhccHHHHHHhhc--CC-----chhHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHH
Q 030478 77 KFGITFTFGNLLSLGSTAFLIGPKRQVTMML--DP-----ARIYATAIYIASMIIALFSALYVHNKL-LTLLALILEFGA 148 (176)
Q Consensus 77 kFallyTlGsil~l~s~~FL~Gp~~q~k~m~--~~-----~R~~~t~~yl~sl~~TL~~al~~~s~l-l~ll~~i~Q~~a 148 (176)
..-++=++|.+..+.+..-|..-+...++-- ++ ++..-.+++++ .+|=.....++.+. +.. ...+.. .
T Consensus 253 ~pklLG~~GGi~Ll~G~~~l~~l~~R~~~~~~~~~~~~~~D~~fl~lL~lv--~~TGl~l~~~R~t~~m~~-ll~lHL-g 328 (372)
T TIGR02484 253 LPVILGLVGGVAMLAGAAGLSGLEARADPEPLKTPAMLRSDRFLLGQLALL--AGTGLALLALRDTPAMGL-LLALHL-G 328 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHHH--HHHHHHHHHHcCcHHHHH-HHHHHH-H
Confidence 3556777788877777766665555554322 11 22222233333 23334444455544 455 444554 4
Q ss_pred HHHHHHhcccchH
Q 030478 149 LIWYSLSYIPFAR 161 (176)
Q Consensus 149 l~wY~lSyiP~G~ 161 (176)
.++..+-|.||++
T Consensus 329 ~V~~lF~~lPysK 341 (372)
T TIGR02484 329 AVAGAFLGLPFSK 341 (372)
T ss_pred HHHHHHHHccHHH
Confidence 5667777899997
No 40
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=29.14 E-value=3.5e+02 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030478 48 KQRLYGFAICFSVGIFCTLLS 68 (176)
Q Consensus 48 ~qRi~gF~~c~~~g~~~~~ls 68 (176)
++|++.++..+.+|.++-.+.
T Consensus 5 k~~~~~~~~~illg~~iGg~~ 25 (248)
T PF11368_consen 5 KKRILRFLLLILLGGLIGGFI 25 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347888888777776655544
No 41
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=29.13 E-value=4.9e+02 Score=24.49 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=26.1
Q ss_pred hhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHH
Q 030478 74 NPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYI 119 (176)
Q Consensus 74 ~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl 119 (176)
.+..++++.+...+=.+++...+. .+++-++++|++.....+
T Consensus 252 ~a~~yGll~a~~gvGai~Gal~~~----~l~~~~~~~~lv~~~~~~ 293 (524)
T PF05977_consen 252 GASGYGLLLAAFGVGAILGALLLP----RLRRRLSSRRLVLLASLL 293 (524)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HhhcccCcchhhHHHHHH
Confidence 467788887777776666655432 255666777776544433
No 42
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=28.99 E-value=2.7e+02 Score=21.41 Aligned_cols=20 Identities=30% Similarity=0.208 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030478 50 RLYGFAICFSVGIFCTLLSL 69 (176)
Q Consensus 50 Ri~gF~~c~~~g~~~~~ls~ 69 (176)
+-..+.+++++|+.......
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 17 LRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456677777776666555
No 43
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=28.98 E-value=3.3e+02 Score=22.50 Aligned_cols=114 Identities=20% Similarity=0.317 Sum_probs=59.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHhH--------HHHHHHhhhhHhccHHHHH-Hh
Q 030478 41 RQCTLTTKQRLYGFAICFSVGIFCTLLSLLVF------FNPIKFGITFTF--------GNLLSLGSTAFLIGPKRQV-TM 105 (176)
Q Consensus 41 ~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l------~~p~kFallyTl--------Gsil~l~s~~FL~Gp~~q~-k~ 105 (176)
+.-.+|...|.+ .+=+..|++-+.++.+.- ..|.-++-.|.. |+++.+...+.+.=-.+.+ +-
T Consensus 13 ~~~~~s~~~~~~--~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~ 90 (173)
T PF11085_consen 13 REKPMSFLAKVL--EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYA 90 (173)
T ss_pred cCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667766765 445566777777775421 234444444432 3333333332222111111 22
Q ss_pred hcCC-chhHHHHHHHHHHHHHHHHHH--------H----hhhHHHHHHHHHHHHHHHHHHHHhc
Q 030478 106 MLDP-ARIYATAIYIASMIIALFSAL--------Y----VHNKLLTLLALILEFGALIWYSLSY 156 (176)
Q Consensus 106 m~~~-~R~~~t~~yl~sl~~TL~~al--------~----~~s~ll~ll~~i~Q~~al~wY~lSy 156 (176)
+++| +-...-++|=+.+-+.++..+ . -++++.|=+|.-+-+.-++=|++||
T Consensus 91 ~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiLyGlFIGYSIsf 154 (173)
T PF11085_consen 91 LLKKFKGPWPGILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYILYGLFIGYSISF 154 (173)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHHHHHHhceeehh
Confidence 2333 223356666666666666665 1 2356777777777777777777765
No 44
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=27.95 E-value=1.9e+02 Score=22.16 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 030478 108 DPARIYATAIYIASMIIALFSALY----VHNKLLTLLALILEFGALIWYSLSYIPFARS 162 (176)
Q Consensus 108 ~~~R~~~t~~yl~sl~~TL~~al~----~~s~ll~ll~~i~Q~~al~wY~lSyiP~G~~ 162 (176)
+.+|.-++.++.++++.+....+. .+..+.+++..+.=..+++-|+.||.=|.++
T Consensus 53 ~n~~kAa~~af~v~l~~~~ii~l~~~i~~~~~~~~~~i~i~~~i~l~vf~~~~~~ye~~ 111 (118)
T PF12676_consen 53 ENVRKAASRAFFVALILLFIILLISMIFDNLELITILIAIAFAIALLVFAISYLYYEYR 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666777777777766555543 2334566777777888888899988776654
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=27.65 E-value=5.3e+02 Score=24.41 Aligned_cols=84 Identities=23% Similarity=0.242 Sum_probs=50.1
Q ss_pred hHHH-HHHHhHHHHHHHhhhhHhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHh-hhHHHH-HHHHHHHHHHHHH
Q 030478 75 PIKF-GITFTFGNLLSLGSTAFLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALYV-HNKLLT-LLALILEFGALIW 151 (176)
Q Consensus 75 p~kF-allyTlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~~-~s~ll~-ll~~i~Q~~al~w 151 (176)
|.|+ +..--+|-......+-|+.|-|++-+-..+ +.+.|+.|.++..+.-..- ..-+|+ .+...+-+.-+.+
T Consensus 132 ~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~s-----F~iG~~~sv~La~~~~~~~ie~lLL~~~IGi~~i~~l~~~ 206 (467)
T COG4267 132 VYKILACALFVGMSLVWILMIFLSGLKKYKLIVLS-----FFIGYVVSVLLARLFLKSPIEGLLLTLDIGIFIILFLLNF 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555 444446777778889999998777554433 5566666666555443321 111222 2233344456678
Q ss_pred HHHhcccchHHH
Q 030478 152 YSLSYIPFARSM 163 (176)
Q Consensus 152 Y~lSyiP~G~~~ 163 (176)
|.++|+|+.|+.
T Consensus 207 ~Ilr~fk~~~~i 218 (467)
T COG4267 207 YILRYFKSSRRI 218 (467)
T ss_pred HHHHhccccccc
Confidence 999999988754
No 46
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=27.52 E-value=3.6e+02 Score=22.33 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=14.7
Q ss_pred HHHHHHHHhcccchHHHHHH
Q 030478 147 GALIWYSLSYIPFARSMVSK 166 (176)
Q Consensus 147 ~al~wY~lSyiP~G~~~l~~ 166 (176)
.+.+|-+++..|-|.+.+++
T Consensus 178 lGi~~q~~tllPi~~k~~~~ 197 (210)
T PRK01100 178 VGSLFQVISINPITYKLLNR 197 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56667777788888877764
No 47
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=27.22 E-value=2e+02 Score=23.79 Aligned_cols=18 Identities=22% Similarity=0.216 Sum_probs=12.3
Q ss_pred ccHHHHHHhhcCCchhHH
Q 030478 97 IGPKRQVTMMLDPARIYA 114 (176)
Q Consensus 97 ~Gp~~q~k~m~~~~R~~~ 114 (176)
.-=++|+|||.+=+=.|.
T Consensus 149 ~tm~~qI~hMiKy~Y~Pf 166 (176)
T PF03248_consen 149 LTMKRQIKHMIKYRYVPF 166 (176)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 344799999987554443
No 48
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=26.55 E-value=1.8e+02 Score=18.64 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhhHHHH--HHHhHHHHHHHhhhhH
Q 030478 60 VGIFCTLLSLLVFFNPIKFG--ITFTFGNLLSLGSTAF 95 (176)
Q Consensus 60 ~g~~~~~ls~~~l~~p~kFa--llyTlGsil~l~s~~F 95 (176)
.|++....+...+.+|.... +.+-+|-.+.+.+..-
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~ 39 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQ 39 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777788887553 3344444444444333
No 49
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=26.15 E-value=45 Score=23.24 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=43.8
Q ss_pred hHHHHHHHhhhhHhccHHHHHHhhcCCch------hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Q 030478 83 TFGNLLSLGSTAFLIGPKRQVTMMLDPAR------IYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSY 156 (176)
Q Consensus 83 TlGsil~l~s~~FL~Gp~~q~k~m~~~~R------~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY~lSy 156 (176)
.+|-+....+.+....|..+++++.+++- .+.....+.+..=+.|.-+.. +. ..++.-++-.+.-.+|.+-|
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~-d~-~i~~~N~~g~~~~~~~~~~~ 79 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILIN-DW-PIIVPNVFGLVLSIIYLVVY 79 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcC-Ce-eEEeeHHHHHHHHHHHHhhe
Confidence 45777788888899999999999986532 334455555555566665543 32 22222233333334444444
Q ss_pred ccc
Q 030478 157 IPF 159 (176)
Q Consensus 157 iP~ 159 (176)
.-|
T Consensus 80 ~~y 82 (87)
T PF03083_consen 80 YIY 82 (87)
T ss_pred EEe
Confidence 444
No 50
>PF03620 IBV_3C: IBV 3C protein; InterPro: IPR005296 These proteins are the product of ORF 3C from Infectious bronchitis virus. Currently, the function of this protein remains unknown.
Probab=25.65 E-value=2.4e+02 Score=20.88 Aligned_cols=51 Identities=27% Similarity=0.485 Sum_probs=35.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccchH
Q 030478 107 LDPARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFGALIWYSLSYIPFAR 161 (176)
Q Consensus 107 ~~~~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~al~wY~lSyiP~G~ 161 (176)
++..--..|.+|+..-+..+| +-...|...--.+..|++.||.-+-.|+.|
T Consensus 9 leeNG~Flt~lYv~~gfialY----llgk~LqaFvQAaDac~Lfwytw~v~pgak 59 (93)
T PF03620_consen 9 LEENGSFLTALYVLLGFIALY----LLGKALQAFVQAADACCLFWYTWVVVPGAK 59 (93)
T ss_pred HHhcCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhheeeccCCc
Confidence 334444577888766555554 334456666677788999999999999876
No 51
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=24.72 E-value=3.3e+02 Score=21.00 Aligned_cols=20 Identities=25% Similarity=0.158 Sum_probs=13.8
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 030478 41 RQCTLTTKQRLYGFAICFSV 60 (176)
Q Consensus 41 ~~~~LS~~qRi~gF~~c~~~ 60 (176)
..+|||++|..+.+++..++
T Consensus 3 PnrSLs~~g~~~~~~~~~~~ 22 (140)
T PF10003_consen 3 PNRSLSPRGFLIFIAILAAV 22 (140)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 36899999988765554433
No 52
>KOG4320 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.34 E-value=2.9e+02 Score=24.19 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhHHHHHHHhhhhHhccHHHHHHhhcCC---------chhH
Q 030478 44 TLTTKQRLYGFAICFSVGIFCTLLSLLV-FFNPIKFGITFTFGNLLSLGSTAFLIGPKRQVTMMLDP---------ARIY 113 (176)
Q Consensus 44 ~LS~~qRi~gF~~c~~~g~~~~~ls~~~-l~~p~kFallyTlGsil~l~s~~FL~Gp~~q~k~m~~~---------~R~~ 113 (176)
+.++.+-.+|++.|++++++--+--.-+ ..+-..=.+.|..|++-.. ..+.+.+...| -|..
T Consensus 88 ~~n~~~l~~G~~aalgl~vVaNfQet~i~~VH~~ga~laF~~g~LY~~--------~Qa~LSy~~~p~~~~~~v~~iR~~ 159 (253)
T KOG4320|consen 88 KGNTVALWIGLAAALGLSVVANFQETAIRIVHDIGAVLAFGAGLLYMW--------FQAILSYQRDPNIPTLIVFYIRLV 159 (253)
T ss_pred HHHHHHHHHHHHHHhhheeeeecccccchhhhhhhhhHHhcchHHHHH--------HHHHHHhccCCCcccchhhHHHHH
Confidence 6677777778877777654433222111 1111112233444444322 11222222222 2556
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhcccchHH
Q 030478 114 ATAIYIASMIIALFSALYVHN-----------KLLTLLALILEFGALIWYSLSYIPFARS 162 (176)
Q Consensus 114 ~t~~yl~sl~~TL~~al~~~s-----------~ll~ll~~i~Q~~al~wY~lSyiP~G~~ 162 (176)
-+++.-.+.+.++.++-+.++ +.+=.+..+.|+++.+-+.+-++-|+++
T Consensus 160 lavi~~~~~~~~lv~s~v~~~~~~~W~p~d~~~~lh~isai~EW~~a~~F~~FilTF~~E 219 (253)
T KOG4320|consen 160 LAVICCASFFFMLVASSVFHSDKLPWNPRDPGYQLHAISAICEWVCAISFIFFILTFIYE 219 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcCCCCCCCCceeeehHHHHHHHHHHHHHHhhhhhhHHH
Confidence 666666666677777766554 6788889999998877666665555554
No 53
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=23.50 E-value=1.8e+02 Score=25.05 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhccc---chHHH--HHHHHhhcccCC
Q 030478 118 YIASMIIALFSALYV-----HNKLLTLLALILEFGALIWYSLSYIP---FARSM--VSKIMLACFDTE 175 (176)
Q Consensus 118 yl~sl~~TL~~al~~-----~s~ll~ll~~i~Q~~al~wY~lSyiP---~G~~~--l~~~~~~~~~~~ 175 (176)
|-+++...|.+++.. ..|++-|+++.=-+.+..|+..-|+| ++|.+ +..-.+.-+|||
T Consensus 6 ~g~~v~~~l~~cVHavRThqe~YWlfIif~Fp~iG~VaYfvav~LPEl~~~R~a~~~~~a~~q~ldP~ 73 (251)
T COG4700 6 YGVVVMLELLCCVHAVRTHQERYWLFIIFCFPVIGCVAYFVAVMLPELGADRHAHTLLMALQQKLDPE 73 (251)
T ss_pred hhHHHHHHHHHHHHHHHhcchHHHHHHHHHhcccchhhHHHHHhhhHhcccchhHHHHHHHHHhcChh
Confidence 344556666666642 24899999999899999999999999 45544 334466777775
No 54
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=23.35 E-value=2.9e+02 Score=19.94 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H---hhhhHHH-HHHHhHHHHHHHhhhhHhccHH
Q 030478 48 KQRLYGFAICFSVGIFCTLLSLL-----V---FFNPIKF-GITFTFGNLLSLGSTAFLIGPK 100 (176)
Q Consensus 48 ~qRi~gF~~c~~~g~~~~~ls~~-----~---l~~p~kF-allyTlGsil~l~s~~FL~Gp~ 100 (176)
.||++..++...=|++- ..+.- + +..|..+ -+-+..|-+++..+..|+-|+.
T Consensus 1 M~R~iAlliLvIPg~~a-~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI 61 (77)
T PF11118_consen 1 MQRFIALLILVIPGILA-AYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFI 61 (77)
T ss_pred ChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHh
Confidence 37888777766655432 22211 1 1245433 5567889999999999999984
No 55
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=23.03 E-value=3.1e+02 Score=21.11 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=18.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 030478 125 ALFSALYVHNKLLTLLALILEFGALIW 151 (176)
Q Consensus 125 TL~~al~~~s~ll~ll~~i~Q~~al~w 151 (176)
+.-.++.+...+.++.|..++++++.|
T Consensus 25 ~~a~~f~~~GaW~Vl~F~glev~~l~~ 51 (140)
T PF10003_consen 25 IIAIAFLLMGAWPVLPFAGLEVLALWY 51 (140)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333344456678899999999776644
No 56
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=22.69 E-value=1.7e+02 Score=18.45 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=17.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q 030478 127 FSALYVHNKLLTLLALILEFGALIW 151 (176)
Q Consensus 127 ~~al~~~s~ll~ll~~i~Q~~al~w 151 (176)
|..++|-+|.++++.++..++...+
T Consensus 3 y~~yVW~sYg~t~~~l~~l~~~~~~ 27 (46)
T PF04995_consen 3 YGFYVWSSYGVTALVLAGLIVWSLR 27 (46)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888887777665544
No 57
>COG5547 Small integral membrane protein [Function unknown]
Probab=21.84 E-value=2.8e+02 Score=19.16 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 030478 110 ARIYATAIYIASMIIALFSALYVHNKLLTLLALILEFG 147 (176)
Q Consensus 110 ~R~~~t~~yl~sl~~TL~~al~~~s~ll~ll~~i~Q~~ 147 (176)
-|.+--...++-+++.++.++.+..++++++.+.+-+.
T Consensus 7 fkypIIgglvglliAili~t~GfwKtilviil~~lGv~ 44 (62)
T COG5547 7 FKYPIIGGLVGLLIAILILTFGFWKTILVIILILLGVY 44 (62)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454455566677788888888888888887776554
No 58
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=21.29 E-value=3.2e+02 Score=19.55 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030478 49 QRLYGFAICFSVGIFCTL 66 (176)
Q Consensus 49 qRi~gF~~c~~~g~~~~~ 66 (176)
.|+.|+++=++++.++..
T Consensus 49 t~i~GlaiGfvfA~vLv~ 66 (73)
T COG4218 49 TRIAGLAIGFVFAGVLVG 66 (73)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 688888887777666543
No 59
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=20.48 E-value=3.9e+02 Score=26.38 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=40.4
Q ss_pred HhccHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 030478 95 FLIGPKRQVTMMLDPARIYATAIYIASMIIALFSALY--------VHNKLLTLLALILEFGALIWYSLSYI 157 (176)
Q Consensus 95 FL~Gp~~q~k~m~~~~R~~~t~~yl~sl~~TL~~al~--------~~s~ll~ll~~i~Q~~al~wY~lSyi 157 (176)
.+.+-.+.+-+-+++.|=..+.+|=..+++-.+.+++ -+...-+-+..++|++..+|+.+-|+
T Consensus 73 r~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~Efi 143 (654)
T KOG1419|consen 73 RYRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFI 143 (654)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666665555554444444 34456677778889999999888776
No 60
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=20.13 E-value=88 Score=25.98 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=10.0
Q ss_pred HHHHhCCCCcchhhh
Q 030478 11 MKMLVGMDVEDEESA 25 (176)
Q Consensus 11 lk~~~~~~~~~~~~~ 25 (176)
-|+.+|-++|||+++
T Consensus 15 tRK~LGVGge~ddG~ 29 (179)
T PF14936_consen 15 TRKILGVGGEDDDGE 29 (179)
T ss_pred hhhhccccccCCCCc
Confidence 377888886655444
Done!