Query 030478
Match_columns 176
No_of_seqs 112 out of 381
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 23:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lfh_A DNA-binding protein inh 43.4 14 0.00049 25.0 2.3 19 1-19 26-44 (68)
2 2ql2_B Neurod1, neurogenic dif 35.3 16 0.00056 23.7 1.6 17 1-17 14-30 (60)
3 1mdy_A Protein (MYOD BHLH doma 29.0 21 0.00073 23.8 1.3 17 1-17 24-40 (68)
4 4aya_A DNA-binding protein inh 19.6 48 0.0016 23.8 1.7 19 1-19 37-55 (97)
5 1a0a_A BHLH, protein (phosphat 18.1 53 0.0018 21.3 1.5 15 2-16 15-29 (63)
6 3u5v_A Protein MAX, transcript 14.2 65 0.0022 21.7 1.3 16 1-16 17-32 (76)
7 4h10_A ARYL hydrocarbon recept 13.1 92 0.0031 20.9 1.8 15 2-16 22-36 (73)
8 1an4_A Protein (upstream stimu 13.1 94 0.0032 19.7 1.8 17 2-18 18-34 (65)
9 1hlo_A Protein (transcription 11.7 83 0.0028 21.0 1.2 16 1-16 24-39 (80)
10 1nkp_B MAX protein, MYC proto- 11.2 73 0.0025 21.3 0.7 16 1-16 14-29 (83)
No 1
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.42 E-value=14 Score=25.01 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.9
Q ss_pred ChhhhHHHHHHHHHhCCCC
Q 030478 1 MEKMNHAFEKMKMLVGMDV 19 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~~~~ 19 (176)
|+.+|.++|+||+.+-..+
T Consensus 26 m~~lN~aF~~LR~~VP~~p 44 (68)
T 2lfh_A 26 LDDMNHCYSRLRELVPGVP 44 (68)
T ss_dssp SSHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 6789999999999985543
No 2
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=35.31 E-value=16 Score=23.70 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=14.4
Q ss_pred ChhhhHHHHHHHHHhCC
Q 030478 1 MEKMNHAFEKMKMLVGM 17 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~~ 17 (176)
|..||.++++||+.+-.
T Consensus 14 ~~~iN~af~~LR~~lP~ 30 (60)
T 2ql2_B 14 MHGLNAALDNLRKVVPC 30 (60)
T ss_dssp HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHccC
Confidence 56899999999998843
No 3
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=28.98 E-value=21 Score=23.78 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=14.4
Q ss_pred ChhhhHHHHHHHHHhCC
Q 030478 1 MEKMNHAFEKMKMLVGM 17 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~~ 17 (176)
|..||.++++||+.+-.
T Consensus 24 ~~~iN~af~~LR~~iP~ 40 (68)
T 1mdy_A 24 LSKVNEAFETLKRSTSS 40 (68)
T ss_dssp HHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 56899999999998843
No 4
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=19.58 E-value=48 Score=23.83 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.1
Q ss_pred ChhhhHHHHHHHHHhCCCC
Q 030478 1 MEKMNHAFEKMKMLVGMDV 19 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~~~~ 19 (176)
|..+|.+++.||+.+-..+
T Consensus 37 m~~lN~AF~~LR~~vP~~p 55 (97)
T 4aya_A 37 LYNMNDCYSKLKELVPSIP 55 (97)
T ss_dssp HHHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 3569999999999985543
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=18.05 E-value=53 Score=21.31 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHhC
Q 030478 2 EKMNHAFEKMKMLVG 16 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~ 16 (176)
|+||.+++.|++++-
T Consensus 15 ~rIn~~~~~L~~LlP 29 (63)
T 1a0a_A 15 NRLAVALHELASLIP 29 (63)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCC
Confidence 789999999999884
No 6
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=14.24 E-value=65 Score=21.75 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.9
Q ss_pred ChhhhHHHHHHHHHhC
Q 030478 1 MEKMNHAFEKMKMLVG 16 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~ 16 (176)
+++||.+++.||+.+-
T Consensus 17 r~~IN~~f~~Lr~~vP 32 (76)
T 3u5v_A 17 RRDINEAFRELGRMCQ 32 (76)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3689999999999885
No 7
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=13.14 E-value=92 Score=20.86 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHhC
Q 030478 2 EKMNHAFEKMKMLVG 16 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~ 16 (176)
|+||..++.||.++-
T Consensus 22 ~rIN~~l~eL~~LvP 36 (73)
T 4h10_A 22 DKMNSFIDELASLVP 36 (73)
T ss_dssp HHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHcc
Confidence 789999999999983
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=13.06 E-value=94 Score=19.73 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHhCCC
Q 030478 2 EKMNHAFEKMKMLVGMD 18 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~~~ 18 (176)
++||..++.|++.+-..
T Consensus 18 ~~in~~~~~L~~lvP~~ 34 (65)
T 1an4_A 18 DKINNWIVQLSKIIPDS 34 (65)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHCcCc
Confidence 68999999999999544
No 9
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=11.72 E-value=83 Score=20.98 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.8
Q ss_pred ChhhhHHHHHHHHHhC
Q 030478 1 MEKMNHAFEKMKMLVG 16 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~ 16 (176)
+++||.+++.||+.+-
T Consensus 24 R~~in~~f~~Lr~lvP 39 (80)
T 1hlo_A 24 RDHIKDSFHSLRDSVP 39 (80)
T ss_dssp HHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHCc
Confidence 3689999999999984
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=11.17 E-value=73 Score=21.33 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.8
Q ss_pred ChhhhHHHHHHHHHhC
Q 030478 1 MEKMNHAFEKMKMLVG 16 (176)
Q Consensus 1 ~~~~~~~~~~lk~~~~ 16 (176)
+++||.+++.||+.+-
T Consensus 14 R~~in~~f~~Lr~lvP 29 (83)
T 1nkp_B 14 RDHIKDSFHSLRDSVP 29 (83)
T ss_dssp HHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3689999999999984
Done!