Query 030478
Match_columns 176
No_of_seqs 112 out of 381
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 23:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030478.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030478hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nlwa_ a.38.1.1 (A:) Mad prot 17.6 31 0.0023 21.3 2.0 18 2-19 14-31 (79)
2 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 15.4 32 0.0023 20.5 1.5 14 2-15 15-28 (63)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 13.0 33 0.0024 21.6 1.2 16 2-17 19-34 (88)
4 d1mdya_ a.38.1.1 (A:) Myod B/H 9.7 55 0.004 19.8 1.3 16 2-17 25-40 (68)
5 d1uklc_ a.38.1.1 (C:) SREBP-2 9.6 60 0.0044 19.1 1.5 15 2-16 2-16 (61)
6 d1an4a_ a.38.1.1 (A:) Usf B/HL 8.8 76 0.0056 18.7 1.8 15 2-16 18-32 (65)
7 d1am9a_ a.38.1.1 (A:) SREBP-1a 8.0 1.1E+02 0.0081 18.6 2.4 16 2-17 19-34 (80)
8 d1q90a3 f.23.23.1 (A:248-292) 7.9 2E+02 0.014 16.3 3.3 23 108-130 1-23 (45)
9 d2v7qi1 a.137.8.1 (I:1-47) Eps 7.9 61 0.0044 18.8 0.9 22 154-176 9-30 (47)
10 d1nkpb_ a.38.1.1 (B:) Max prot 7.8 66 0.0048 19.8 1.2 15 2-16 15-29 (83)
No 1
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.56 E-value=31 Score=21.28 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHhCCCC
Q 030478 2 EKMNHAFEKMKMLVGMDV 19 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~~~~ 19 (176)
|+||..++.||+.+-..+
T Consensus 14 ~~in~~f~~L~~llP~~~ 31 (79)
T d1nlwa_ 14 AHLRLSLEKLKGLVPLGP 31 (79)
T ss_dssp HHHHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHHHhCccCC
Confidence 789999999999995443
No 2
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.41 E-value=32 Score=20.51 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHh
Q 030478 2 EKMNHAFEKMKMLV 15 (176)
Q Consensus 2 ~~~~~~~~~lk~~~ 15 (176)
++||..++.||+.+
T Consensus 15 ~~in~~~~~L~~ll 28 (63)
T d1a0aa_ 15 NRLAVALHELASLI 28 (63)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC
Confidence 68999999999998
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.01 E-value=33 Score=21.59 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHhCC
Q 030478 2 EKMNHAFEKMKMLVGM 17 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~~ 17 (176)
|+||..++.||+.+-.
T Consensus 19 ~~in~~f~~Lr~llP~ 34 (88)
T d1nkpa_ 19 NELKRSFFALRDQIPE 34 (88)
T ss_dssp HHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6899999999999943
No 4
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.68 E-value=55 Score=19.76 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHhCC
Q 030478 2 EKMNHAFEKMKMLVGM 17 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~~ 17 (176)
++||.+++.|++.+-.
T Consensus 25 ~~in~~~~~L~~llP~ 40 (68)
T d1mdya_ 25 SKVNEAFETLKRSTSS 40 (68)
T ss_dssp HHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHCCC
Confidence 6899999999999844
No 5
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.59 E-value=60 Score=19.08 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHhC
Q 030478 2 EKMNHAFEKMKMLVG 16 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~ 16 (176)
|+||..++.||+.+-
T Consensus 2 ~~in~~f~~L~~lvP 16 (61)
T d1uklc_ 2 SSINDKIIELKDLVM 16 (61)
T ss_dssp CCHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHhhCC
Confidence 689999999999994
No 6
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.78 E-value=76 Score=18.72 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHhC
Q 030478 2 EKMNHAFEKMKMLVG 16 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~ 16 (176)
++||..++.|+..+-
T Consensus 18 ~~in~~f~~L~~lvP 32 (65)
T d1an4a_ 18 DKINNWIVQLSKIIP 32 (65)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcc
Confidence 689999999999993
No 7
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.04 E-value=1.1e+02 Score=18.58 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHhCC
Q 030478 2 EKMNHAFEKMKMLVGM 17 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~~ 17 (176)
++||..++.|++.+-.
T Consensus 19 ~~in~~~~~L~~llP~ 34 (80)
T d1am9a_ 19 SSINDKIIELKDLVVG 34 (80)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 6899999999999954
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.91 E-value=2e+02 Score=16.31 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 030478 108 DPARIYATAIYIASMIIALFSAL 130 (176)
Q Consensus 108 ~~~R~~~t~~yl~sl~~TL~~al 130 (176)
+|.|+..-++|+.+++++=..-.
T Consensus 1 nP~Rv~gll~F~~~v~laQi~LV 23 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVLLV 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888777655433
No 9
>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.90 E-value=61 Score=18.83 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=14.8
Q ss_pred HhcccchHHHHHHHHhhcccCCC
Q 030478 154 LSYIPFARSMVSKIMLACFDTEF 176 (176)
Q Consensus 154 lSyiP~G~~~l~~~~~~~~~~~~ 176 (176)
+||+-|..-+.+ ..+.|+.|||
T Consensus 9 lsYi~Ys~iaA~-~vR~aLK~e~ 30 (47)
T d2v7qi1 9 LSYIRYSQICAK-AVRDALKTEF 30 (47)
T ss_dssp CCHHHHHHHHHH-HHHTTBCTTT
T ss_pred hhHHHHHHHHHH-HHHHHhChHH
Confidence 567777665544 4778888876
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.81 E-value=66 Score=19.78 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHhC
Q 030478 2 EKMNHAFEKMKMLVG 16 (176)
Q Consensus 2 ~~~~~~~~~lk~~~~ 16 (176)
++||..++.||+.+-
T Consensus 15 ~~in~~f~~L~~llP 29 (83)
T d1nkpb_ 15 DHIKDSFHSLRDSVP 29 (83)
T ss_dssp HHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHhC
Confidence 689999999999993
Done!