BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030479
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
 pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
           Double Mutant (W95l,N249y)
          Length = 347

 Score = 31.2 bits (69), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 77  GNLSLDLSEGSKWNISRSG-FCGMRSKKFDGFIDLDSYDTIAM-KLKGDGRCYISTIYTE 134
           GNL +    G K  ++      G   +  D  +     D +A+  L+G+G CY   I  E
Sbjct: 50  GNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEE 109

Query: 135 NWVNSP---GQQEDNSWQSFVFVP 155
           +  +SP   G   D ++  +V VP
Sbjct: 110 HLCDSPRWLGINFDGAYAEYVIVP 133


>pdb|3IDE|A Chain A, Structure Of Ipnv Subviral Particle
 pdb|3IDE|B Chain B, Structure Of Ipnv Subviral Particle
 pdb|3IDE|C Chain C, Structure Of Ipnv Subviral Particle
 pdb|3IDE|D Chain D, Structure Of Ipnv Subviral Particle
 pdb|3IDE|E Chain E, Structure Of Ipnv Subviral Particle
          Length = 442

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 58 SSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGF 96
          SS +LE++ESG+G+   F G     +    +WN +++G 
Sbjct: 39 SSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGL 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,784,081
Number of Sequences: 62578
Number of extensions: 246186
Number of successful extensions: 528
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 6
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)