Query 030479
Match_columns 176
No_of_seqs 118 out of 492
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 23:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0a_A Endoglucanase H; carboh 99.8 6.7E-21 2.3E-25 150.4 11.1 116 29-170 5-124 (178)
2 1wmx_A COG3291: FOG: PKD repea 94.2 0.68 2.3E-05 36.6 10.9 74 92-169 59-143 (205)
3 1wky_A Endo-beta-1,4-mannanase 86.7 12 0.00042 32.4 12.8 112 28-169 311-431 (464)
4 3f95_A Beta-glucosidase; beta- 83.3 5.5 0.00019 31.1 8.0 51 107-168 78-140 (193)
5 3orj_A Sugar-binding protein; 45.6 6.9 0.00023 34.3 1.2 13 157-169 339-351 (439)
6 3gdb_A Endo-D, putative unchar 40.4 1.6E+02 0.0054 28.3 9.7 95 56-169 558-654 (937)
7 1uy4_A Endo-1,4-beta-xylanase 35.7 1.2E+02 0.0041 21.7 6.6 38 92-135 53-90 (145)
8 1od3_A Putative xylanase; hydr 25.7 2E+02 0.0069 21.2 7.3 37 92-135 75-112 (168)
9 1w9s_A BH0236 protein, BHCBM6; 24.2 1.9E+02 0.0065 20.3 7.0 38 92-135 44-82 (142)
10 1gui_A Laminarinase 16A; carbo 22.5 2E+02 0.007 20.1 8.5 46 116-168 77-123 (155)
No 1
>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30
Probab=99.84 E-value=6.7e-21 Score=150.43 Aligned_cols=116 Identities=15% Similarity=0.219 Sum_probs=86.2
Q ss_pred CCccEEEecCCccccCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCccccc-CceeeEEeeCCCCCC
Q 030479 29 PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNIS-RSGFCGMRSKKFDGF 107 (176)
Q Consensus 29 ~~~~~L~~F~~~~~~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~ln-~gGFAsvrt~~~~~~ 107 (176)
..+.+|++|..+. .|..++|. |.|.+ +.+.+.. ..+.++||++ | +|||+|||..+ ++
T Consensus 5 ~~~~~i~df~~~~---~W~~v~Ds---~~s~s-~~~~~g~----~~~~l~VS~~---------N~nGGF~svr~n~--~~ 62 (178)
T 1v0a_A 5 VGEKMLDDFEGVL---NWGSYSGE---GAKVS-TKIVSGK----TGNGMEVSYT---------GTTDGYWGTVYSL--PD 62 (178)
T ss_dssp BSEEEEECSSSSC---CCEEEEET---TCEEE-EEEEECS----SSEEEEEEEE---------CCSSCEEEEEEEC--SC
T ss_pred ccCcceecCCCCC---ceEEEcCC---CcEEE-EEEecCc----eeeEEEEEEe---------cCCCCEEEEEcCC--CC
Confidence 3566888886554 89999994 33333 5554442 2344499999 8 99999999753 68
Q ss_pred CCCCCCCeEEEEEee---cCcEEEEEEEeCCCcCCCCCCCCCceEEEEEeCCCCEEEEEEeCCCce
Q 030479 108 IDLDSYDTIAMKLKG---DGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLN 170 (176)
Q Consensus 108 ~dls~y~gl~lrvrG---DGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~~t~~g~W~tV~iPFs~F~ 170 (176)
.|++.|+||+|+|+| ||++|+|.||+....- -.+...|++ .|++...|++|+|||++|.
T Consensus 63 ~d~s~~~GI~l~vkG~~~nG~~y~~~LR~~~~~~---~~~~~~y~~-sF~t~~~W~~IeIPFs~F~ 124 (178)
T 1v0a_A 63 GDWSKWLKISFDIKSVDGSANEIRFMIAEKSING---VGDGEHWVY-SITPDSSWKTIEIPFSSFR 124 (178)
T ss_dssp CCCTTCCEEEEEEEEC---CCCEEEEEEEECTTS---SSEEEEEEE-EECCCSSCEEEEEEGGGCE
T ss_pred CCHhHCCcEEEEEEcCCCCCCEEEEEEeeCCCCC---CCCCeeEEE-EecCCCcCEEEEEEHHHhc
Confidence 999999999999999 6999999999975420 001134554 4566689999999999999
No 2
>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A
Probab=94.16 E-value=0.68 Score=36.58 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=51.4
Q ss_pred cCceeeEEeeCCC-CCCCCCCCCC---eEEEEEeec--CcEEEEEEEeCCCcCCCCCCCCCceEEEE----E-eCCCCEE
Q 030479 92 SRSGFCGMRSKKF-DGFIDLDSYD---TIAMKLKGD--GRCYISTIYTENWVNSPGQQEDNSWQSFV----F-VPKDNWY 160 (176)
Q Consensus 92 n~gGFAsvrt~~~-~~~~dls~y~---gl~lrvrGD--Gr~Y~l~l~t~~~~~~~~~~~~~~~q~~~----~-t~~g~W~ 160 (176)
++.|+.++-..+- -...||+.|- +|++-|||. |..+.|-+.+...-. .....-|... + +.+-+||
T Consensus 59 ~~~~w~~~~~~l~~w~~~DLs~y~~nG~leF~IKG~~GGE~~~ig~~D~~~e~----~~g~~~~~~~~~~~yi~VttEwQ 134 (205)
T 1wmx_A 59 VQSGWWISLLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYER----VYGLEIDVTTVISNYVTVTTDWQ 134 (205)
T ss_dssp CCSSCEEEEEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTTC----TTCSSCEEEEEGGGTCCCCSSCE
T ss_pred ccCceeEEEEeccCcceeehhhhhcCCeEEEEEecccCceeEEEEEecccccc----cCCceeEEEeechheEEeccccE
Confidence 6888887654431 2467888874 899999985 789999999873211 1223444433 2 2356999
Q ss_pred EEEEeCCCc
Q 030479 161 IAKVSSFLL 169 (176)
Q Consensus 161 tV~iPFs~F 169 (176)
-|.||+.+|
T Consensus 135 HvsiPLkdF 143 (205)
T 1wmx_A 135 HVKIPLRDL 143 (205)
T ss_dssp EEEEEGGGT
T ss_pred EEEeeHHHh
Confidence 999999999
No 3
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=86.67 E-value=12 Score=32.44 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=69.2
Q ss_pred CCCccEEEecCCccccCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCcccccCceeeEEeeCCCCCC
Q 030479 28 PPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGF 107 (176)
Q Consensus 28 p~~~~~L~~F~~~~~~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~ln~gGFAsvrt~~~~~~ 107 (176)
++.+.++++|.+.. +.|..-+- ++|...+.-. ..+ | .....+.+.+. ++.+|- +... ..
T Consensus 311 ~~~~~~~~df~~~~--~~w~~~~~--~~g~~~~~~~-~~~--g-~~sl~~~~~~~---------~~~~~~-~~~~---~~ 369 (464)
T 1wky_A 311 RTSPTTLYDFEEST--QGWTGSSL--SRGPWTVTEW-SSK--G-NHSLKADIQMS---------SNSQHY-LHVI---QN 369 (464)
T ss_dssp ---CEEEECCSSSC--TTEEEESC--SEEEEEESSC-CSS--T-TCEEEEEEEEC---------TTCEEE-EEEE---EE
T ss_pred CCCCcccccccCCC--cccccccc--cCCceeeccc-ccc--C-ceeEeeeeeec---------CCCceE-EEEe---ec
Confidence 35667899999763 78996442 3443222111 112 2 34456666665 566663 5543 46
Q ss_pred CCCCCCCeEEEEEeec-------CcEEEEEEEeCCCcCCCCCCCCCceEEE--EEeCCCCEEEEEEeCCCc
Q 030479 108 IDLDSYDTIAMKLKGD-------GRCYISTIYTENWVNSPGQQEDNSWQSF--VFVPKDNWYIAKVSSFLL 169 (176)
Q Consensus 108 ~dls~y~gl~lrvrGD-------Gr~Y~l~l~t~~~~~~~~~~~~~~~q~~--~~t~~g~W~tV~iPFs~F 169 (176)
.|+++++.|.++|+-. |=+=+|-++|.+.+ .|+-- ....+++|.++.|+|+.-
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~~~---------~w~~~~~~~i~~~~~~~l~~~l~~~ 431 (464)
T 1wky_A 370 RSLQQNSRIQATVKHANWGSVGNGMTARLYVKTGHGY---------TWYSGSFVPINGSSGTTLSLDLSNV 431 (464)
T ss_dssp ECCTTCCEEEEEEEEC-------CEEEEEEEEETTTT---------EEEECCCEEECSSSCEEEEEECTTC
T ss_pred cCCCCcceEEEEEEeccCCCCCCCeeEEEEEEeCCCc---------eEecCCceEecCCCceEEEEEcccC
Confidence 8999999999999832 45677777887654 34431 223567999999999854
No 4
>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}
Probab=83.27 E-value=5.5 Score=31.11 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCCCCCC--eEEEEEeecC---cEEEEEEEeCCCcCCCCCCCCCceEEEE-E------eCCCCEEEEEEeCCC
Q 030479 107 FIDLDSYD--TIAMKLKGDG---RCYISTIYTENWVNSPGQQEDNSWQSFV-F------VPKDNWYIAKVSSFL 168 (176)
Q Consensus 107 ~~dls~y~--gl~lrvrGDG---r~Y~l~l~t~~~~~~~~~~~~~~~q~~~-~------t~~g~W~tV~iPFs~ 168 (176)
+.| +.|. .|.|++|-|- ..-.|.+.+.... -...+ . .+.|+|++|.||++-
T Consensus 78 ~~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~~----------C~~~vdit~~L~~~~~g~W~tv~IpL~C 140 (193)
T 3f95_A 78 PLD-SKFSTGYLELKMRIDKAPEQGANLQVMCSESN----------CLRDIDFSSFSQLMADKSWHTLAIPLHC 140 (193)
T ss_dssp ECC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSSC----------EEEEEEGGGTHHHHTTCCCEEEEEESCC
T ss_pred CcC-ChhhCceEEEEEEeecCCCCcEEEEEecCCCC----------ccceeehhHhhhhccCCCCEEEEEeCcc
Confidence 456 5553 5888888653 3566677765320 11111 1 156899999999975
No 5
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=45.58 E-value=6.9 Score=34.31 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=11.9
Q ss_pred CCEEEEEEeCCCc
Q 030479 157 DNWYIAKVSSFLL 169 (176)
Q Consensus 157 g~W~tV~iPFs~F 169 (176)
-.||||.|||+.|
T Consensus 339 ~~~~~~~~~~~~~ 351 (439)
T 3orj_A 339 TGWQTVTVPFSEF 351 (439)
T ss_dssp SSCEEEEEEGGGS
T ss_pred cCceEEEeehHHh
Confidence 4599999999999
No 6
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=40.40 E-value=1.6e+02 Score=28.32 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=53.3
Q ss_pred ceeEEEEEEecCC-CcceEEEEEEEecccCCCCcccccCceeeEEeeCCCCCCCCCCCCCeEEEEEeec-CcEEEEEEEe
Q 030479 56 GLSSASLEITESG-NGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGD-GRCYISTIYT 133 (176)
Q Consensus 56 G~S~~~l~~~~~~-~~~~~~F~G~ls~~~p~~~~~~ln~gGFAsvrt~~~~~~~dls~y~gl~lrvrGD-Gr~Y~l~l~t 133 (176)
+.-++.+++.+.= .|..++|+|.|.- .+...+|. |...+.+..-.-|.+.+|++ +-.-.|.|.+
T Consensus 558 ~~l~~~~d~~DAy~GGSSL~l~G~l~~------------~~~~~irL--Fkt~L~v~~~~~l~l~~K~~~~s~l~l~L~~ 623 (937)
T 3gdb_A 558 EKLRAEYDFTDAYNGGNSLKFSGDVAG------------KTDQDVRL--YSTKLEVTEKTKLRVAHKGGKGSKVYMAFST 623 (937)
T ss_dssp CCCEEEEESSCCSSBSCEEEEEEEECS------------SEEEEEEE--EEEEEECCTTCEEEEEEEECTTSEEEEEEEC
T ss_pred CceEEEEecccccCCcceEEEEEEcCC------------CCceeEEE--EeecccCCCCCEEEEEEecCCCceEEEEEEc
Confidence 4445666654321 1347999999862 33344443 32334455545688888875 4466666765
Q ss_pred CCCcCCCCCCCCCceEEEEEeCCCCEEEEEEeCCCc
Q 030479 134 ENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLL 169 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~q~~~~t~~g~W~tV~iPFs~F 169 (176)
..... ......|. ..+..++|+++.+++++|
T Consensus 624 ~~~~~---~~~~~~~~--~~~~~~~Wt~~t~dLs~l 654 (937)
T 3gdb_A 624 TPDYK---FDDADAWK--ELTLSDNWTNEEFDLSSL 654 (937)
T ss_dssp STTCC---CCCGGGEE--ECCCEEEEEEEEEECGGG
T ss_pred CCCce---eccccccc--ccccCCCcEEEEEEcccc
Confidence 43211 00011232 234467999999999987
No 7
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=35.65 E-value=1.2e+02 Score=21.75 Aligned_cols=38 Identities=5% Similarity=0.027 Sum_probs=24.3
Q ss_pred cCceeeEEeeCCCCCCCCCCCCCeEEEEEeecCcEEEEEEEeCC
Q 030479 92 SRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTEN 135 (176)
Q Consensus 92 n~gGFAsvrt~~~~~~~dls~y~gl~lrvrGDGr~Y~l~l~t~~ 135 (176)
.+|.|+.++.-.|. +....|.+||.+.+ ...|.|+.+.
T Consensus 53 ~~G~wi~y~~vdf~-----~G~~~~~~rvas~~-gg~ievrlds 90 (145)
T 1uy4_A 53 ENGNTVTYSNIDFG-----SGATGFSATVATEV-NTSIQIRSDS 90 (145)
T ss_dssp CTTCEEEEEEEECT-----TCEEEEEEEEECSS-CEEEEEEESS
T ss_pred CCCCEEEEEEEEcC-----CCCEEEEEEEEeCC-CcEEEEEECC
Confidence 47778777743221 35567888887654 3577777775
No 8
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A
Probab=25.69 E-value=2e+02 Score=21.15 Aligned_cols=37 Identities=5% Similarity=0.079 Sum_probs=23.8
Q ss_pred cCceeeEEeeCCCCCCCCC-CCCCeEEEEEeecCcEEEEEEEeCC
Q 030479 92 SRSGFCGMRSKKFDGFIDL-DSYDTIAMKLKGDGRCYISTIYTEN 135 (176)
Q Consensus 92 n~gGFAsvrt~~~~~~~dl-s~y~gl~lrvrGDGr~Y~l~l~t~~ 135 (176)
.+|.++.++.- |+ +....|.+||.+.+ ...|.|+.+.
T Consensus 75 ~~G~wl~y~~v------dfg~G~~~~~~rvas~~-~G~ievrlds 112 (168)
T 1od3_A 75 ENGYSTTYKNI------DFGDGATSVTARVATQN-ATTIQVRLGS 112 (168)
T ss_dssp CTTCEEEEEEE------ECTTCEEEEEEEEECSS-CEEEEEEESS
T ss_pred cCCCEEEEEeE------EeCCCcEEEEEEEEcCC-CcEEEEEECC
Confidence 46777776643 23 35667888887654 3577777764
No 9
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A*
Probab=24.15 E-value=1.9e+02 Score=20.33 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=23.7
Q ss_pred cCceeeEEeeCCCCCCCCC-CCCCeEEEEEeecCcEEEEEEEeCC
Q 030479 92 SRSGFCGMRSKKFDGFIDL-DSYDTIAMKLKGDGRCYISTIYTEN 135 (176)
Q Consensus 92 n~gGFAsvrt~~~~~~~dl-s~y~gl~lrvrGDGr~Y~l~l~t~~ 135 (176)
.+|.++..+-- |+ +....|.+||...+..-.|.|+.+.
T Consensus 44 ~~G~wl~y~~v------d~~~G~~~~~~rvas~~~gg~iev~~d~ 82 (142)
T 1w9s_A 44 NDGDWVKYERV------HFERDASSIEVRVASDTPGGRIEIRTGS 82 (142)
T ss_dssp CTTCEEEEEEE------EESSCEEEEEEEEEESSSCEEEEEEESS
T ss_pred CCCCEEEEEeE------ecCCCcEEEEEEEEcCCCCeEEEEEECC
Confidence 47777777642 23 5666788888864433466666664
No 10
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14
Probab=22.54 E-value=2e+02 Score=20.11 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=23.4
Q ss_pred EEEEEeecC-cEEEEEEEeCCCcCCCCCCCCCceEEEEEeCCCCEEEEEEeCCC
Q 030479 116 IAMKLKGDG-RCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFL 168 (176)
Q Consensus 116 l~lrvrGDG-r~Y~l~l~t~~~~~~~~~~~~~~~q~~~~t~~g~W~tV~iPFs~ 168 (176)
|.+.+|++. +...+.|..... .+ ..|....+..+.+|+++.+-|..
T Consensus 77 lsf~aka~~~~~i~v~l~~~~~------~~-~~~~~~~~~lt~~w~~~~~~ft~ 123 (155)
T 1gui_A 77 ISFKAKADTPRPINVKILQNHD------PW-TNYFAQTVNLTADWQTFTFTYTH 123 (155)
T ss_dssp EEEEEEESSCEEEEEEEECSST------TC-CEEEEEEEEECSSCEEEEEEEEC
T ss_pred EEEEEEeCCCCcEEEEEEcCCC------Ch-HHheeccEeeCCCCEEEEEEEEc
Confidence 677777765 555555554311 00 11211122334588888877653
Done!