BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030480
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 123/175 (70%), Gaps = 3/175 (1%)
Query: 2 ARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPA 61
R +EPL++GRV+GDV+D FTP T+M V Y KQV+NG E+ PS+ + KP V+IH
Sbjct: 9 TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLR 68
Query: 62 SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRY 121
S +TLVM+DPD P PS+P +E LHWIV +IP +DAT GKE+V+Y P+P GIHR+
Sbjct: 69 S--FFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRF 126
Query: 122 VFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 176
VF LF QK + + P +R +F+TR+FA + L PVAAV+FN+Q+E A RKR
Sbjct: 127 VFVLFRQKQRRVIFPNIP-SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 173 bits (439), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 115/178 (64%), Gaps = 7/178 (3%)
Query: 4 SMEPLVVGRVIGDVVDMFTPATEMTVHYGT----KQVANGCEIKPSASADKPSVQIHAPP 59
S +PLV+GRVIGDVVD FT +M+V Y + K V NG E+ PSA P V++H
Sbjct: 6 SSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGD 65
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIH 119
S +TL+M DPD P PS+P RE LHWIV DIP +D++ GKE+V+Y P+P GIH
Sbjct: 66 MRS--FFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIH 123
Query: 120 RYVFALFNQKGKVMAGCRPP-DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 176
R+VF LF QK + A PP R F+TR+F +N L PVAAV+FN Q+E A R+R
Sbjct: 124 RFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 3 RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPAS 62
R +PLVVGRV+GDV+D F +T + V YG+K V+NG E+KPS +P V++ +
Sbjct: 6 RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRT 65
Query: 63 SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYV 122
YTLVMVDPDAPSPS+P RE+LHW+V DIP + A+ G+E+++Y P+P GIHR V
Sbjct: 66 --FYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLV 123
Query: 123 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 170
F LF Q G+ P R NF+T+ FA L PVAAVYFNSQ+E
Sbjct: 124 FVLFQQLGR--QTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 103/165 (62%), Gaps = 4/165 (2%)
Query: 6 EPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNL 65
+PL+V RV+GDV+D F + + V YG ++V NG ++PS +KP V+I N
Sbjct: 10 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGE--DLRNF 67
Query: 66 YTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFAL 125
YTLVMVDPD PSPS P RE+LHW+V DIP + T G E+V+Y P P GIHR VF L
Sbjct: 68 YTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFIL 127
Query: 126 FNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 170
F Q G+ P R NF+TR FA L PVAAV++NSQ+E
Sbjct: 128 FRQLGR--QTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 170
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 12/174 (6%)
Query: 13 VIGDVVDMFTPATEMTVHYGTK-QVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMV 71
++ DV+D PA + V YG +V G E+ P+ D+P V SNL TL+MV
Sbjct: 4 IVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLE-GKSNLLTLLMV 61
Query: 72 DPDAPSPSEPRYREWLHWIVVDIPEGSDA-TKGKELVAYMGPQPP--TGIHRYVFALFNQ 128
DPDAP+ +P+YRE LHW VV+IP ++ + G L Y+G PP TG+HRY+F L+ Q
Sbjct: 62 DPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQ 121
Query: 129 KGKV----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE--VAVRKR 176
+ K+ R NF+ R FAA +GL P+AA Y+ +Q + V +R +
Sbjct: 122 ENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIRNK 175
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKP-SVQIHAPPPASSNLYTLVMVDPDAPSPSE 80
P + V YG +V G + P+ ++P S+ P LYTLV+ DPDAPS +
Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG--KLYTLVLTDPDAPSRKD 77
Query: 81 PRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKV-----M 133
P+YREW H++VV++ +G++ + G L Y+G PP TG+HRYV+ ++ Q+G + +
Sbjct: 78 PKYREWHHFLVVNM-KGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPI 136
Query: 134 AGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 175
R D R F F L PVA + ++ + V K
Sbjct: 137 LSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKP-SVQIHAPPPASSNLYTLVMVDPDAPSPSE 80
P + V YG +V G + P+ ++P S+ P LYTLV+ DPDAPS +
Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG--KLYTLVLTDPDAPSRKD 77
Query: 81 PRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKV-----M 133
P+YREW H++VV++ +G++ + G L Y+G PP TG+HRYV+ ++ Q+G + +
Sbjct: 78 PKYREWHHFLVVNM-KGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPI 136
Query: 134 AGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 175
R D R F F L PVA + ++ + V K
Sbjct: 137 LSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEP 81
P + V YG V G + P+ ++PS I LYTLV+ DPDAPS +P
Sbjct: 21 PQHALRVDYGGVTVDELGKVLTPTQVMNRPS-SISWDGLDPGKLYTLVLTDPDAPSRKDP 79
Query: 82 RYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP 139
++REW H++VV++ +G+D + G L Y+G PP TG+HRYV+ ++ Q+ + C P
Sbjct: 80 KFREWHHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPL--NCDEP 136
Query: 140 -------DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 175
D R F F L PVA F ++ + +V K
Sbjct: 137 ILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPK 179
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEP 81
P + V YG V G + P+ ++PS I LYTLV+ DPDAPS +P
Sbjct: 24 PQHALRVDYGGVTVDELGKVLTPTQVMNRPS-SISWDGLDPGKLYTLVLTDPDAPSRKDP 82
Query: 82 RYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP 139
++REW H++VV++ +G+D + G L Y+G PP TG+HRYV+ ++ Q+ + C P
Sbjct: 83 KFREWHHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPL--NCDEP 139
Query: 140 -------DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 175
D R F F L PVA F ++ + +V K
Sbjct: 140 ILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPK 182
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 62 SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIH 119
S LYTLV+ DPDAPS +P+YREW H++VV++ +G+D + G L Y+G PP TG+H
Sbjct: 60 SGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNM-KGNDISSGTVLSDYVGSGPPKGTGLH 118
Query: 120 RYVFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 174
RYV+ ++ Q + + R D R F F L+ PVA + ++ + V
Sbjct: 119 RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVP 178
Query: 175 K 175
K
Sbjct: 179 K 179
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 64 NLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIHRY 121
LYTL++ DPDAPS +P YREW H++VV++ +G+D + G L Y+G PP TG+HRY
Sbjct: 58 KLYTLILTDPDAPSRKKPVYREWHHFLVVNM-KGNDISSGNVLSDYVGSGPPKGTGLHRY 116
Query: 122 VFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 175
V+ ++ Q + + R D R F T F L PVA + ++ + V K
Sbjct: 117 VWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPK 175
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 35/151 (23%)
Query: 13 VIGDVVD--MFTPATEMTVHYGTKQ-VANGCEIKPSASADKPSVQI-------------H 56
++ DV+ F P+ + V Y + VA G + + KP Q +
Sbjct: 21 ILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQAN 80
Query: 57 APPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA---------------- 100
A P +L+TLVM DPDAPS ++ ++ E+ H + D+ ++A
Sbjct: 81 AYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFN 140
Query: 101 TKGKE-LVAYMGPQPP--TGIHRYVFALFNQ 128
TKG L+ YMGP PP +G HRYVF L+ Q
Sbjct: 141 TKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQ 171
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 34 KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93
K+V +G + + + P + P + L MVDPD PS P +E++HW+V
Sbjct: 54 KEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKEYIHWVVSG 113
Query: 94 IPEGSDATKGKE-----LVAYMGP--QPPTGIHRYVFAL 125
I + + KG + ++ Y+GP + TG+HR F +
Sbjct: 114 I-KTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 34 KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93
K+V +G + + + P + P Y L +DPD PS P R+++HW V
Sbjct: 47 KEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFXIDPDFPSRRRPDGRDYVHWAVSG 106
Query: 94 IPEGSDATKGKE-----LVAYMGP--QPPTGIHRYVFAL 125
I + + KG + L+ Y+GP + TG+HR F L
Sbjct: 107 I-KSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144
>pdb|3N08|A Chain A, Crystal Structure Of A Putative
Phosphatidylethanolamine-Binding Protein (Pebp) Homolog
Ct736 From Chlamydia Trachomatis DUW-3CX
pdb|3N08|B Chain B, Crystal Structure Of A Putative
Phosphatidylethanolamine-Binding Protein (Pebp) Homolog
Ct736 From Chlamydia Trachomatis DUW-3CX
Length = 153
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYRE---WLHWIVVDI-PEGSDATKGKELVAYMG---- 111
P + L++ DPD P P RE W+HWIV ++ P S+ +G ++ A G
Sbjct: 38 PREAKSLVLIVEDPDVP----PSVREDGLWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTA 93
Query: 112 -------PQPPTGIHRYVFALF 126
P PP HRY F +
Sbjct: 94 GEIGYCPPCPPDAKHRYYFYAY 115
>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member Of
The Mammalian Pebp Family
Length = 159
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 25/86 (29%)
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT---KGKELVA-------- 108
PA + + + DPDAP+ S W HW+VV++P + G LVA
Sbjct: 41 PAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQT 95
Query: 109 --------YMGPQPPTG-IHRYVFAL 125
Y G PP G HRY+F +
Sbjct: 96 RTDFGKTGYDGAAPPKGETHRYIFTV 121
>pdb|1VI3|A Chain A, Crystal Structure Of An Hypothetical Protein
Length = 170
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 25/86 (29%)
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT---KGKELVA-------- 108
PA + + + DPDAP+ S W HW+VV++P + G LVA
Sbjct: 42 PAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQT 96
Query: 109 --------YMGPQPPTG-IHRYVFAL 125
Y G PP G HRY+F +
Sbjct: 97 RTDFGKTGYDGAAPPKGETHRYIFTV 122
>pdb|1FUX|A Chain A, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
Length = 166
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 39 GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP 95
GCE PS+ P + + + + + DPDAP+ S W HW VV+IP
Sbjct: 26 GCE----GGNTSPSLTWSGVPEGTKS-FAVTVYDPDAPTGSG-----WWHWTVVNIP 72
>pdb|2VOZ|A Chain A, Apo Futa2 From Synechocystis Pcc6803
pdb|2VOZ|B Chain B, Apo Futa2 From Synechocystis Pcc6803
pdb|2VP1|A Chain A, Fe-Futa2 From Synechocystis Pcc6803
pdb|2VP1|B Chain B, Fe-Futa2 From Synechocystis Pcc6803
Length = 346
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 62 SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI---PEGSDATKGKELVAYMGPQPPTGI 118
SSN+Y L + EP R WL +V + PEG+D + + + A +G
Sbjct: 165 SSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAAGIGDVAIANS 224
Query: 119 HRYV 122
+ Y+
Sbjct: 225 YYYI 228
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 75 APSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMA 134
A SPS+PRY E +H+I++D P S + + G P+ + + A F Q+ A
Sbjct: 164 AVSPSDPRYHE-VHYILLD-PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHA 221
Query: 135 GCRPPDARSNFST 147
P R +ST
Sbjct: 222 LTFPSLQRLVYST 234
>pdb|1NT4|A Chain A, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
pdb|1NT4|B Chain B, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
Length = 391
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 84 REWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAG-CRPPDAR 142
+W W D+P G TKG L YMG Y+ ++G V +G C PP
Sbjct: 37 NKWPEW---DVPGGQLTTKGGVLEVYMG--------HYMREWLAEQGMVKSGECPPP--- 82
Query: 143 SNFSTRRFAADNGLQPPVAAVYF 165
+A N LQ VA F
Sbjct: 83 ----YTVYAYANSLQRTVATAQF 101
>pdb|3NTL|A Chain A, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
pdb|3NTL|B Chain B, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
Length = 398
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 84 REWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAG-CRPPDAR 142
++W W ++P G TKG L YMG Y+ Q+G V G C D+
Sbjct: 35 KQWPEW---EVPGGQLTTKGGVLEVYMG--------HYMREWLAQQGMVKTGECPAADS- 82
Query: 143 SNFSTRRFAADNGLQPPVAAVYF 165
+A N LQ VA F
Sbjct: 83 ------VYAYANSLQRTVATAQF 99
>pdb|2A98|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Inositol 1,4,5- Trisphosphate 3-kinase C
Length = 259
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 40 CEIKPSASADKPSVQIHAPPPASSNLY-TLVMVDPDAPSPSE--------PRYREW 86
C++ ++ V+ P ++Y +V VDP AP+P E PRY +W
Sbjct: 61 CKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQW 116
>pdb|1UOZ|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Thiocellopentaose At 1.1
Angstrom
Length = 315
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 132 VMAGCRPPDARSN-FSTRRFAADNGLQPPVAAVYFNS 167
MA C PD R F R+A D + P AAVY ++
Sbjct: 144 AMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDA 180
>pdb|1UP0|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Cellobiose At 1.75 Angstrom
Length = 294
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 132 VMAGCRPPDARSN-FSTRRFAADNGLQPPVAAVYFNS 167
MA C PD R F R+A D + P AAVY ++
Sbjct: 123 AMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDA 159
>pdb|1UP3|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With
Methyl-Cellobiosyl-4-Deoxy-4-Thio-Beta-D-Cellobioside At
1.6 Angstrom
Length = 294
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 132 VMAGCRPPDARSN-FSTRRFAADNGLQPPVAAVYFNS 167
MA C PD R F R+A D + P AAVY ++
Sbjct: 123 AMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDA 159
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 91 VVDIPEGSDATKGKELVA----YMGPQPPTGI 118
+ ++PEG +A G EL+A +G PP GI
Sbjct: 71 IKEVPEGKEAPNGHELIADFWKIIGNAPPGGI 102
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 91 VVDIPEGSDATKGKELVA----YMGPQPPTGI 118
+ ++PEG +A G EL+A +G PP GI
Sbjct: 73 IKEVPEGKEAPNGHELIADFWKIIGNAPPGGI 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,604,468
Number of Sequences: 62578
Number of extensions: 236895
Number of successful extensions: 504
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 30
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)