Query 030480
Match_columns 176
No_of_seqs 134 out of 1223
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 14:21:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00169 CETS family protein; 100.0 4.8E-54 1E-58 330.8 18.5 172 1-176 2-173 (175)
2 KOG3346 Phosphatidylethanolami 100.0 1.3E-52 2.7E-57 322.9 14.6 175 1-176 1-178 (185)
3 cd00866 PEBP_euk PhosphatidylE 100.0 3E-38 6.6E-43 238.9 16.1 141 26-167 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 100.0 6.4E-29 1.4E-33 186.2 11.9 129 25-166 2-146 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 9.9E-25 2.2E-29 166.1 12.4 124 35-166 6-158 (159)
6 cd00865 PEBP_bact_arch Phospha 99.8 1.8E-18 4E-23 130.5 11.6 106 37-155 8-137 (150)
7 PRK10257 putative kinase inhib 99.8 1.3E-18 2.8E-23 132.1 10.8 97 33-135 5-131 (158)
8 PRK09818 putative kinase inhib 99.8 3.7E-18 7.9E-23 132.3 10.0 101 27-135 22-154 (183)
9 COG1881 Phospholipid-binding p 99.7 6E-18 1.3E-22 130.0 9.3 96 33-134 27-143 (174)
10 TIGR00481 Raf kinase inhibitor 99.7 3.5E-17 7.7E-22 122.2 11.1 95 48-155 13-128 (141)
11 KOG3586 TBX1 and related T-box 41.1 37 0.00079 29.7 3.6 53 37-94 95-154 (437)
12 PRK04243 50S ribosomal protein 35.8 48 0.001 26.1 3.3 30 61-93 125-154 (196)
13 PTZ00026 60S ribosomal protein 31.1 61 0.0013 25.7 3.2 30 61-93 125-154 (204)
14 COG1632 RPL15A Ribosomal prote 23.9 1.1E+02 0.0024 23.9 3.5 31 61-94 124-154 (195)
15 PF11040 DGF-1_C: Dispersed ge 20.0 75 0.0016 21.2 1.6 14 102-115 47-60 (87)
No 1
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=4.8e-54 Score=330.85 Aligned_cols=172 Identities=52% Similarity=0.905 Sum_probs=160.0
Q ss_pred CcccccccccCCceeccCCCCCCCeEEEEEECCeeecCCCccCCCcCCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCC
Q 030480 1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSE 80 (176)
Q Consensus 1 ~~~~~~~l~~~~i~pdvl~~F~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~ 80 (176)
|++++++|.+++||||+|+.|.|+..|+|+|++..|.+|+.|++++++.+|+|+|.+.+. +++|||+|+|||+|++.+
T Consensus 2 ~~~~~~~l~~~~iipdvid~f~P~~~L~V~y~s~~V~~G~~l~p~~t~~~P~i~~~~~~~--~~~ytlim~DpDaP~~~~ 79 (175)
T PLN00169 2 SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGSREVNNGCELKPSQVVNQPRVDIGGEDL--RTFYTLVMVDPDAPSPSN 79 (175)
T ss_pred CcccccchhhCCcCCcccCCcCCceEEEEEECCcCcCCcCCCCHHHhccCCEEEEccCCC--CceeEEEEECCCCCCCCC
Confidence 789999999999999999999999999999999999999999999999999999987543 678999999999999999
Q ss_pred CCCceeEEEEEEecCCCcCCCCCceeecccCCCCCCCCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhCCCCce
Q 030480 81 PRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPV 160 (176)
Q Consensus 81 ~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~L~~pv 160 (176)
+++++||||+++||+++.....|+++++|+||+|++|.|||+|+||+|++.+... .+..|.+||+++|++++||+.||
T Consensus 80 ~~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~--~~~~R~~F~~~~Fa~~~~L~~Pv 157 (175)
T PLN00169 80 PNLREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVY--APGWRQNFNTRDFAELYNLGSPV 157 (175)
T ss_pred CCcccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccC--CcccCCCcCHHHHHHHhCCCCce
Confidence 9999999999999998765567899999999999999999999999999887643 45689999999999999999999
Q ss_pred EEeEEEEeeCCcCCCC
Q 030480 161 AAVYFNSQKEVAVRKR 176 (176)
Q Consensus 161 a~~~f~~~~d~~~~~~ 176 (176)
|||||++||++.+|+|
T Consensus 158 A~nfF~a~~~~~~~~~ 173 (175)
T PLN00169 158 AAVYFNCQRESGSGGR 173 (175)
T ss_pred EEEEEEEecCCcCCcc
Confidence 9999999999999876
No 2
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=100.00 E-value=1.3e-52 Score=322.87 Aligned_cols=175 Identities=43% Similarity=0.798 Sum_probs=162.1
Q ss_pred CcccccccccCCceeccCCCCCCCeEEEEEECC-eeecCCCccCCCcCCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCC
Q 030480 1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPS 79 (176)
Q Consensus 1 ~~~~~~~l~~~~i~pdvl~~F~P~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~ 79 (176)
|..+.+.+.+++|++|+|+.+.|++.|+|+|++ ..|.+|+.|+++++...|.|+|.+.. ..+++|||||+|||||+++
T Consensus 1 ~~~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a-~~~~~yTLvm~DPDaPsr~ 79 (185)
T KOG3346|consen 1 MSDIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFA-DPGSLYTLVMTDPDAPSRS 79 (185)
T ss_pred CcchhhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcC-CCCCeEEEEEeCCCCCCCC
Confidence 677889999999999999999999999999986 89999999999999999999999751 3489999999999999999
Q ss_pred CCCCceeEEEEEEecCCCcCCCCCceeecccCCCCC--CCCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhCCC
Q 030480 80 EPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQ 157 (176)
Q Consensus 80 ~~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~L~ 157 (176)
+|++++|||||++|||++...+.|++++.|+||.|+ +|.|||+|+||+|+.+.......+..|.+||+++|+++++|+
T Consensus 80 ~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg 159 (185)
T KOG3346|consen 80 DPKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELG 159 (185)
T ss_pred CCcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccC
Confidence 999999999999999999778899999999999996 789999999999999988754335889999999999999999
Q ss_pred CceEEeEEEEeeCCcCCCC
Q 030480 158 PPVAAVYFNSQKEVAVRKR 176 (176)
Q Consensus 158 ~pva~~~f~~~~d~~~~~~ 176 (176)
+||||+||++|||+.++++
T Consensus 160 ~PvA~~~f~aq~d~~~~~~ 178 (185)
T KOG3346|consen 160 TPVAGNFFQAQWDDYVPKL 178 (185)
T ss_pred CchhhheehhhcchhhHHH
Confidence 9999999999999988753
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=3e-38 Score=238.86 Aligned_cols=141 Identities=47% Similarity=0.871 Sum_probs=126.3
Q ss_pred EEEEEECC-eeecCCCccCCCcCCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcC----C
Q 030480 26 EMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSD----A 100 (176)
Q Consensus 26 ~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~----~ 100 (176)
.|.|+|++ ..+.+|+.|++++++.+|+|+|..... .+++|+|||+|||+|.+.++.++++||||++||+.+.. .
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~-~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~ 80 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDP-PDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLV 80 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCC-CCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCcccccccc
Confidence 69999998 899999999999999999999998763 47789999999999999999999999999999998753 3
Q ss_pred CCCceeecccCCCCCC--CCceEEEEEEeeCCCcccCCC-----CCCCCCCcCHHHHHHHhCCCCceEEeEEEE
Q 030480 101 TKGKELVAYMGPQPPT--GIHRYVFALFNQKGKVMAGCR-----PPDARSNFSTRRFAADNGLQPPVAAVYFNS 167 (176)
Q Consensus 101 ~~g~~~~~Y~~P~P~~--G~HRYvfll~~q~~~~~~~~~-----~~~~R~~F~~~~f~~~~~L~~pva~~~f~~ 167 (176)
+.|..+++|+||+|+. |.|||+|+||+|+..+.+... ....|.+||+++|++++||+.|||+|||++
T Consensus 81 ~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 81 SKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 4678899999999964 699999999999999887641 357899999999999999999999999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.96 E-value=6.4e-29 Score=186.21 Aligned_cols=129 Identities=37% Similarity=0.769 Sum_probs=103.8
Q ss_pred eEEEEEE-CCeeecCCCccCCCc-CCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecC-------
Q 030480 25 TEMTVHY-GTKQVANGCEIKPSA-SADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP------- 95 (176)
Q Consensus 25 ~~L~V~y-~~~~v~~G~~l~~~~-t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~------- 95 (176)
..|.|+| ++..+.+|+.+++.. +...|+ ..+.|+|+|+|+|+|.+.++..+++||||++||+
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~---------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~ 72 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT---------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEG 72 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC---------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TT
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC---------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCC
Confidence 4699999 789999999998888 778887 2567999999999999888889999999999999
Q ss_pred --C--CcCCCCCceeecccCCCCC--CCCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhCCCCc-eEEeEEE
Q 030480 96 --E--GSDATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPP-VAAVYFN 166 (176)
Q Consensus 96 --~--~~~~~~g~~~~~Y~~P~P~--~G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~L~~p-va~~~f~ 166 (176)
. ....+.|+.+++|.||+|+ +|.|||+|+||+|+..+.+. .....+++++.+++++|+.+ +|++|||
T Consensus 73 ~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~----~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 73 SDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLS----DGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp SSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSG----BSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred CCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCC----CCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 1 0011236678999999997 56999999999999966552 34555789999999999987 8999997
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.92 E-value=9.9e-25 Score=166.14 Aligned_cols=124 Identities=34% Similarity=0.560 Sum_probs=98.0
Q ss_pred eecC-CCccCC----CcCCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcCC---------
Q 030480 35 QVAN-GCEIKP----SASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA--------- 100 (176)
Q Consensus 35 ~v~~-G~~l~~----~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~--------- 100 (176)
.+.+ |+.|+. .....+|.|+|++.+.+ .+.|+|+|+|||+|.. ++|+||+++||+.+...
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~-t~s~ali~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~~ 79 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPD-VKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVVT 79 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCC-CeEEEEEEECCCCCCC-----CCceEEEEeccCcccccccccccccC
Confidence 4556 888888 66678999999988643 5668999999999843 48999999999986421
Q ss_pred ---CCCc----------eeecccCCCCCC--CCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhCCCCceEEeEE
Q 030480 101 ---TKGK----------ELVAYMGPQPPT--GIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYF 165 (176)
Q Consensus 101 ---~~g~----------~~~~Y~~P~P~~--G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~L~~pva~~~f 165 (176)
..+. ....|.||+|+. |.|||+|+||+|+..+.... ....|..|++.+|++.+.|+ ++|.+++
T Consensus 80 ~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~-~~~~~~~~~~~~~~~~~vL~-~~a~~~~ 157 (159)
T cd00457 80 DNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSK-LGDGRTKFEVARFAEGNVLG-AVGEWVG 157 (159)
T ss_pred CCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCcccccc-ccCCCCHHHHHHHHHhCeee-EEEEEEE
Confidence 0111 234999999976 58999999999998887641 13579999999999999997 6899887
Q ss_pred E
Q 030480 166 N 166 (176)
Q Consensus 166 ~ 166 (176)
+
T Consensus 158 ~ 158 (159)
T cd00457 158 Q 158 (159)
T ss_pred E
Confidence 6
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.78 E-value=1.8e-18 Score=130.46 Aligned_cols=106 Identities=25% Similarity=0.503 Sum_probs=79.4
Q ss_pred cCCCccCCCc--C----CCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcC-CCCC------
Q 030480 37 ANGCEIKPSA--S----ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSD-ATKG------ 103 (176)
Q Consensus 37 ~~G~~l~~~~--t----~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~g------ 103 (176)
..|..++... + ..+|.|+|++.+.+ .+.|+|+|+|+|+|.. .+|+||+++||+.+.. ...|
T Consensus 8 ~~g~~~p~~~~~~~~g~~~SP~l~w~~~p~~-t~s~al~m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~~ 81 (150)
T cd00865 8 FDGGPIPKKYAFTCDGENVSPPLSWSGVPAG-TKSLALIVEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGAL 81 (150)
T ss_pred cCcCCCChhhcccCCCCCcCCCeEEcCCCCC-CeEEEEEEEcCCCCCC-----CCEEEEEEeccCcccccccCCcccccC
Confidence 3455555555 3 47999999998754 4568999999999832 4899999999998621 1111
Q ss_pred ----------ceeecccCCCCCC-CCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhC
Q 030480 104 ----------KELVAYMGPQPPT-GIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNG 155 (176)
Q Consensus 104 ----------~~~~~Y~~P~P~~-G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~ 155 (176)
.....|.||||+. +.|||+|.||+++..+.+ ..++...++++...
T Consensus 82 ~~~~~~g~n~~~~~~Y~gP~Pp~~~~HrY~f~vyAld~~l~~-------~~~~~~~~l~~ai~ 137 (150)
T cd00865 82 PAGAVQGRNDFGEAGYGGPCPPDGGPHRYVFTVYALDVPLLL-------PPGATRAELLFAMK 137 (150)
T ss_pred CCCCeEeecCCCCCeecCCCCcCCCceEEEEEEEEeCCccCC-------CCCCCHHHHHHHHh
Confidence 2468999999987 799999999999988665 34677777776654
No 7
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=132.08 Aligned_cols=97 Identities=25% Similarity=0.599 Sum_probs=73.1
Q ss_pred CeeecCCCccCCCcC---------CCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcCC---
Q 030480 33 TKQVANGCEIKPSAS---------ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA--- 100 (176)
Q Consensus 33 ~~~v~~G~~l~~~~t---------~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~--- 100 (176)
+..+.+|..|+...+ ..+|.|+|++.+.++. .|+|+|.|||+|.. ..|+||+++|||++...
T Consensus 5 S~~f~~g~~ip~~~~~~~~~~~G~n~SP~L~w~~~P~~t~-s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~e 78 (158)
T PRK10257 5 SNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK-SFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQ 78 (158)
T ss_pred ccCccCcCCCCHHHcccccCCCCCCCCceEEEcCCCCCce-EEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccC
Confidence 445667777775443 2589999998875444 57999999999864 37999999999975321
Q ss_pred --C-------CCc-------eeecccCCCCCCC-CceEEEEEEeeC-CCcccC
Q 030480 101 --T-------KGK-------ELVAYMGPQPPTG-IHRYVFALFNQK-GKVMAG 135 (176)
Q Consensus 101 --~-------~g~-------~~~~Y~~P~P~~G-~HRYvfll~~q~-~~~~~~ 135 (176)
+ .|. ....|.||||+.| .|||+|.||+++ ..+.+.
T Consensus 79 g~~~~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 79 GFGSGLVALPDGVLQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVERIDVD 131 (158)
T ss_pred CCCcccccCCCCceeccccCCCccCcCCCCccCCCceEEEEEEEecCcccCCC
Confidence 0 111 1468999999987 799999999999 467764
No 8
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.76 E-value=3.7e-18 Score=132.33 Aligned_cols=101 Identities=27% Similarity=0.597 Sum_probs=75.0
Q ss_pred EEEEECCeeecCCCccCCCcC---------CCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCC
Q 030480 27 MTVHYGTKQVANGCEIKPSAS---------ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEG 97 (176)
Q Consensus 27 L~V~y~~~~v~~G~~l~~~~t---------~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~ 97 (176)
+.|+ +..+.+|..|+.+.+ ..+|.|+|++.+.++ +.|+|+|.|||+|.. ..|+||+++|||++
T Consensus 22 ~~lt--S~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gt-ks~aLi~~DpDaP~g-----~~~~HWvv~nIP~~ 93 (183)
T PRK09818 22 FQVT--SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGT-KSFAVTVYDPDAPTG-----SGWWHWTVANIPAT 93 (183)
T ss_pred EEEE--CcCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCc-EEEEEEEECCCCCCC-----CcEEEEEEEcCCCC
Confidence 5554 666778988886532 269999999887544 458999999999864 37999999999875
Q ss_pred cCC-------------CCCc-------eeecccCCCCCCC--CceEEEEEEeeC-CCcccC
Q 030480 98 SDA-------------TKGK-------ELVAYMGPQPPTG--IHRYVFALFNQK-GKVMAG 135 (176)
Q Consensus 98 ~~~-------------~~g~-------~~~~Y~~P~P~~G--~HRYvfll~~q~-~~~~~~ 135 (176)
... ..|. ....|.||||+.| .|||+|.||+++ ..+.+.
T Consensus 94 ~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~ 154 (183)
T PRK09818 94 VTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD 154 (183)
T ss_pred ccccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC
Confidence 321 0111 1358999999765 899999999999 446653
No 9
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=6e-18 Score=130.05 Aligned_cols=96 Identities=29% Similarity=0.633 Sum_probs=74.3
Q ss_pred CeeecCCCccCCCcC----CCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcCC------C-
Q 030480 33 TKQVANGCEIKPSAS----ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA------T- 101 (176)
Q Consensus 33 ~~~v~~G~~l~~~~t----~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~------~- 101 (176)
+..+..|+.++...+ ..+|.++|++.+.++++ |+|+|.|||||.. ..|+||+++||+..... .
T Consensus 27 s~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS-~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~~ 100 (174)
T COG1881 27 SNAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKS-FALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGPK 100 (174)
T ss_pred chhhhCCCccchhhhcCCCCcCCceeecCCCCCCee-EEEEEECCCCCCC-----CcEEEEEEEccCCcccccccccccc
Confidence 567788988887765 57999999998865555 7999999999974 58999999999973210 0
Q ss_pred --CC-------ceeecccCCCCCCCC-ceEEEEEEeeCCCccc
Q 030480 102 --KG-------KELVAYMGPQPPTGI-HRYVFALFNQKGKVMA 134 (176)
Q Consensus 102 --~g-------~~~~~Y~~P~P~~G~-HRYvfll~~q~~~~~~ 134 (176)
.| -.-..|.|||||.|. |||.|.||+++.....
T Consensus 101 ~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~ 143 (174)
T COG1881 101 SKIGIVQGINDFGSRGYGGPCPPKGHGHRYYFTVYALDVELLL 143 (174)
T ss_pred cccceEEeeccccccCcccCCCCCCCCeEEEEEEEEccccccc
Confidence 00 112459999999887 9999999999985443
No 10
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.73 E-value=3.5e-17 Score=122.25 Aligned_cols=95 Identities=29% Similarity=0.645 Sum_probs=72.2
Q ss_pred CCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcCC-----C-------CC--------ceee
Q 030480 48 ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA-----T-------KG--------KELV 107 (176)
Q Consensus 48 ~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~-----~-------~g--------~~~~ 107 (176)
..+|.|+|++.+.++ +.|+|+|+|+|+|... .|+||+++||+++.+. + .| -...
T Consensus 13 n~SP~l~w~~~P~~t-~s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~ 86 (141)
T TIGR00481 13 NISPPLSWDGVPEGA-KSLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKS 86 (141)
T ss_pred CCCcEEEEcCCCCCc-eEEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCc
Confidence 459999999886543 4589999999998753 4999999999985211 1 11 0146
Q ss_pred cccCCCCCCCCceEEEEEEeeCCC-cccCCCCCCCCCCcCHHHHHHHhC
Q 030480 108 AYMGPQPPTGIHRYVFALFNQKGK-VMAGCRPPDARSNFSTRRFAADNG 155 (176)
Q Consensus 108 ~Y~~P~P~~G~HRYvfll~~q~~~-~~~~~~~~~~R~~F~~~~f~~~~~ 155 (176)
.|.||||+.|.|||+|.||+++.. +.+. .++...++++...
T Consensus 87 ~Y~GP~PP~g~HrY~f~vyALd~~~l~l~-------~~~~~~~l~~ai~ 128 (141)
T TIGR00481 87 GYIGPCPPKGDHRYLFTVYALDTEKLDLD-------PGFSLADLGDAME 128 (141)
T ss_pred cEeCCCCcCCCEEEEEEEEEecCCCCCCC-------CCCCHHHHHHHHh
Confidence 999999999999999999999976 6653 2567777766644
No 11
>KOG3586 consensus TBX1 and related T-box transcription factors [Transcription]
Probab=41.13 E-value=37 Score=29.66 Aligned_cols=53 Identities=30% Similarity=0.494 Sum_probs=30.8
Q ss_pred cCCCcc--CCCcCCCCCeEEE--eCCCCCCCceEEEEEEcCCCCCCCCCCCceeEE---EEEEec
Q 030480 37 ANGCEI--KPSASADKPSVQI--HAPPPASSNLYTLVMVDPDAPSPSEPRYREWLH---WIVVDI 94 (176)
Q Consensus 37 ~~G~~l--~~~~t~~~P~i~~--~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lH---wlv~ni 94 (176)
..|.++ +.+.-...|+|++ .+.+. ...|.|+| |. +| -++..|++..| |||++=
T Consensus 95 ~lGTEMIITKsGRRMFPTvrV~~~GldP--~a~Y~vlm-Dv-VP-vD~KRYRYayH~S~WlvAGk 154 (437)
T KOG3586|consen 95 DLGTEMIITKSGRRMFPTVRVKFSGLDP--MADYYVLM-DV-VP-VDSKRYRYAYHSSSWLVAGK 154 (437)
T ss_pred hcCceEEEecccccccceEEEEEecCCc--ccceEEEE-eE-Ee-cccceeeeeecccceeeecC
Confidence 356664 4444468999765 55443 66675554 33 22 23345666666 999863
No 12
>PRK04243 50S ribosomal protein L15e; Validated
Probab=35.78 E-value=48 Score=26.06 Aligned_cols=30 Identities=27% Similarity=0.570 Sum_probs=22.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCceeEEEEEEe
Q 030480 61 ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93 (176)
Q Consensus 61 ~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~n 93 (176)
+.-+.|-||||||.-|.-.+. +-+.|+...
T Consensus 125 g~yK~fEVIlVDp~H~aIr~D---p~~nWI~~~ 154 (196)
T PRK04243 125 GKYKWYEVILVDPHHPAIKND---PDLNWICDK 154 (196)
T ss_pred CCcccEEEEEecCCCcchhcC---cccceeccc
Confidence 456789999999998864432 578898843
No 13
>PTZ00026 60S ribosomal protein L15; Provisional
Probab=31.11 E-value=61 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=22.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCceeEEEEEEe
Q 030480 61 ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93 (176)
Q Consensus 61 ~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~n 93 (176)
++-+.|-||||||.-|.-.+. +-+.|+...
T Consensus 125 g~yK~yEVILvDp~H~aIr~D---p~~nWI~~~ 154 (204)
T PTZ00026 125 STYKFYEVILVDPFHNAIRND---PRINWICNP 154 (204)
T ss_pred CCcccEEEEEecCCCccceeC---cccceeccc
Confidence 456789999999988864332 578898863
No 14
>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]
Probab=23.94 E-value=1.1e+02 Score=23.94 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=23.4
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCceeEEEEEEec
Q 030480 61 ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI 94 (176)
Q Consensus 61 ~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni 94 (176)
+.-+.|-+|||||+-|.-.+. +-+.||...+
T Consensus 124 g~yK~fEvIlvDp~H~aIk~D---p~l~wI~~~~ 154 (195)
T COG1632 124 GYYKYFEVILVDPRHPAIKND---PNLNWICRPV 154 (195)
T ss_pred cceeeEEEEEecCCChhhcCC---Cceeeecccc
Confidence 456789999999998864443 6789987644
No 15
>PF11040 DGF-1_C: Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus ; InterPro: IPR021053 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents the C-terminal domain on this protein.
Probab=20.03 E-value=75 Score=21.17 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.2
Q ss_pred CCceeecccCCCCC
Q 030480 102 KGKELVAYMGPQPP 115 (176)
Q Consensus 102 ~g~~~~~Y~~P~P~ 115 (176)
..++..+|.||+|+
T Consensus 47 gtt~assYrPPA~~ 60 (87)
T PF11040_consen 47 GTTVASSYRPPAPP 60 (87)
T ss_pred CceeeeccCCCCCc
Confidence 34667899999995
Done!