Query 030480
Match_columns 176
No_of_seqs 134 out of 1223
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wko_A Terminal flower 1 prote 100.0 1.3E-53 4.6E-58 329.7 18.1 173 1-176 8-180 (180)
2 3axy_A Protein heading DATE 3A 100.0 9.3E-53 3.2E-57 322.3 17.7 166 1-171 5-170 (170)
3 2iqy_A Phosphatidylethanolamin 100.0 1.5E-47 5.3E-52 298.1 17.2 167 4-174 4-181 (190)
4 2jyz_A CG7054-PA, GH14779P, PE 100.0 1.4E-46 4.7E-51 290.3 15.6 161 11-174 2-171 (179)
5 2gzq_A Phosphatidylethanolamin 100.0 7.6E-45 2.6E-49 284.9 14.3 166 2-170 12-200 (200)
6 1wpx_B Carboxypeptidase Y inhi 100.0 3.4E-44 1.2E-48 285.1 15.3 167 3-170 11-220 (220)
7 3n08_A Putative phosphatidylet 99.9 5.8E-23 2E-27 154.2 15.1 114 33-155 8-137 (153)
8 1fux_A Hypothetical 19.5 kDa p 99.9 5.7E-23 2E-27 156.3 9.7 97 33-135 7-135 (166)
9 1fjj_A Hypothetical 17.1 kDa p 99.9 3.3E-22 1.1E-26 151.1 11.2 97 33-135 6-132 (159)
10 2evv_A Hypothetical protein HP 99.8 2.2E-20 7.6E-25 146.2 11.7 115 48-175 58-205 (207)
11 3ewt_E Tumor necrosis factor r 36.9 13 0.00044 18.6 0.9 11 146-156 15-25 (25)
12 1ffk_I Ribosomal protein L15E; 27.2 37 0.0013 25.6 2.4 29 61-92 124-152 (194)
No 1
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=100.00 E-value=1.3e-53 Score=329.72 Aligned_cols=173 Identities=52% Similarity=0.882 Sum_probs=155.2
Q ss_pred CcccccccccCCceeccCCCCCCCeEEEEEECCeeecCCCccCCCcCCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCC
Q 030480 1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSE 80 (176)
Q Consensus 1 ~~~~~~~l~~~~i~pdvl~~F~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~ 80 (176)
|+.+.++|+.++||||+++.|.|++.|+|+|++..|.+|+.|+++++..+|+|+|++.+. +++|||+|+|||+|++.+
T Consensus 8 ~~~~~~~l~~~~vipdvl~~f~P~~~l~V~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~--~~~ytlvm~DPDaP~~~~ 85 (180)
T 1wko_A 8 GTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDL--RSFFTLVMIDPDVPGPSD 85 (180)
T ss_dssp --CTTHHHHHTTHHHHTBCCCCCCSEEEEEETTEECCTTCBCCGGGGSSCCEEEEESSCT--TCEEEEEEEECSCSBTTB
T ss_pred HHHHHHHHHhCCCCCCccCCcCCCeeEEEEECCeEcCCCCCcCHHHhCcCCeEEEecCCC--CceEEEEEeCCCCCCCcc
Confidence 688899999999999999999999999999999999999999999999999999998765 458999999999999999
Q ss_pred CCCceeEEEEEEecCCCcCCCCCceeecccCCCCCCCCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhCCCCce
Q 030480 81 PRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPV 160 (176)
Q Consensus 81 ~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~L~~pv 160 (176)
+++++|+|||++||+++.....|..+++|.||+|++|.|||+|+||+|+..+.+.. .+..|.+||+++|+++++|+.||
T Consensus 86 p~~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRYvf~ly~q~~~l~~~~-~~~~R~~F~~~~F~~~~~Lg~PV 164 (180)
T 1wko_A 86 PFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFP-NIPSRDHFNTRKFAVEYDLGLPV 164 (180)
T ss_dssp CTTCCEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECCTTCCCCC-CCCCSTTCCHHHHHHHTTCCSEE
T ss_pred CCCccEEEEEEeccCcCccccCCceeeeeCCCCCCCCceEEEEEEEecCCccCCCC-CccccCCcCHHHHHHHhCCCCcE
Confidence 99999999999999998665678999999999999999999999999999887753 36789999999999999999999
Q ss_pred EEeEEEEeeCCcCCCC
Q 030480 161 AAVYFNSQKEVAVRKR 176 (176)
Q Consensus 161 a~~~f~~~~d~~~~~~ 176 (176)
|+|||++|||++-|+|
T Consensus 165 a~~fF~~q~d~~~r~~ 180 (180)
T 1wko_A 165 AAVFFNAQRETAARKR 180 (180)
T ss_dssp EEEEEEECCC------
T ss_pred EEEEEEEEECCcccCC
Confidence 9999999999998876
No 2
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=100.00 E-value=9.3e-53 Score=322.32 Aligned_cols=166 Identities=52% Similarity=0.895 Sum_probs=155.5
Q ss_pred CcccccccccCCceeccCCCCCCCeEEEEEECCeeecCCCccCCCcCCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCC
Q 030480 1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSE 80 (176)
Q Consensus 1 ~~~~~~~l~~~~i~pdvl~~F~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~ 80 (176)
|+. +|+|++++||||||+.|.|++.|+|+|++..|.+|+.|+++++..+|+|+|++.+. +++|||+|+|||+|++.+
T Consensus 5 m~~-~~~l~~~~vipdvl~~F~P~~~l~v~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~--~~~ytlvm~DpDaP~~~~ 81 (170)
T 3axy_A 5 MRD-RDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDM--RTFYTLVMVDPDAPSPSD 81 (170)
T ss_dssp CCT-TCHHHHTTHHHHTBCCCCCCSCEEEEETTEECCTTEECCGGGSSSCCEEEECCSCT--TCEEEEEEEETTCSCTTS
T ss_pred cch-hchhhhCCccccccCCcCCceEEEEEECCeEcCCCCEeCHHHhCcCCeEEEeCCCC--CcEEEEEEECCCCCCCcc
Confidence 654 89999999999999999999999999999999999999999999999999998764 578999999999999999
Q ss_pred CCCceeEEEEEEecCCCcCCCCCceeecccCCCCCCCCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhCCCCce
Q 030480 81 PRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPV 160 (176)
Q Consensus 81 ~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~L~~pv 160 (176)
+++++||||+++||+++.+.+.|+++++|.||+|++|.|||+|+||+|+..+.+. .+..|.+||+++|+++++|+.||
T Consensus 82 p~~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRY~f~ly~q~~~l~~~--~p~~R~~F~~~~F~~~~~Lg~Pv 159 (170)
T 3axy_A 82 PNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVY--APGWRQNFNTKDFAELYNLGSPV 159 (170)
T ss_dssp CTTCSEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCCCCC--CCSCSTTCCHHHHHHHTTCCSCS
T ss_pred CCCccEEEEEEeCCCCCccccCCceeceecCCCCCCCcEEEEEEEEecCCccCCC--CccccCCcCHHHHHHHhCCCCcE
Confidence 9999999999999999866677889999999999999999999999999988775 46789999999999999999999
Q ss_pred EEeEEEEeeCC
Q 030480 161 AAVYFNSQKEV 171 (176)
Q Consensus 161 a~~~f~~~~d~ 171 (176)
|+|||++|||.
T Consensus 160 a~~fF~~q~d~ 170 (170)
T 3axy_A 160 AAVYFNSQREA 170 (170)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEEEecC
Confidence 99999999984
No 3
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=100.00 E-value=1.5e-47 Score=298.07 Aligned_cols=167 Identities=32% Similarity=0.622 Sum_probs=151.2
Q ss_pred ccccccc--CCceeccCCCCCCCeEEEEEEC-CeeecCCCccCCCcCCCCCe-EEEeCCCCCCCceEEEEEEcCCCCCCC
Q 030480 4 SMEPLVV--GRVIGDVVDMFTPATEMTVHYG-TKQVANGCEIKPSASADKPS-VQIHAPPPASSNLYTLVMVDPDAPSPS 79 (176)
Q Consensus 4 ~~~~l~~--~~i~pdvl~~F~P~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~-i~~~~~~~~~~~~ytlvmvDpD~p~~~ 79 (176)
+.++|++ ++||||+|+. .|+..|+|+|+ +..|.+|+.|+++++...|+ |+|++.+. +++|||+|+|||+|++.
T Consensus 4 ~~~~~~~~~~~vipdvl~~-~p~~~l~v~~~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~--~~~ytlvm~DpDaP~~~ 80 (190)
T 2iqy_A 4 MAADISQWAGPLSLQEVDE-PPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDP--GKLYTLVLTDPDAPSRK 80 (190)
T ss_dssp SSCCGGGTTSTTCGGGTSS-CCSEECEEECSSCBCCSTTEECCGGGGSSCCSEEECTTCCT--TSEEEEEEEESSSSCSS
T ss_pred HHHHHHHhcCccCCcCcCC-CCCceEEEEECCCcccCCCCEECHHHHhCCCceEEEccCCC--CCEEEEEEECCCCCCCC
Confidence 4678899 9999999998 99999999994 57899999999999999999 99998764 47899999999999999
Q ss_pred CCCCceeEEEEEEecCCCcCCCCCceeecccCCCCC--CCCceEEEEEEeeCCCcccCC-----CCCCCCCCcCHHHHHH
Q 030480 80 EPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGC-----RPPDARSNFSTRRFAA 152 (176)
Q Consensus 80 ~~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRYvfll~~q~~~~~~~~-----~~~~~R~~F~~~~f~~ 152 (176)
++++++|+||+++||+++ ....|..+++|.||+|+ +|.|||+|+||+|+..+.+.. .....|.+||+++|++
T Consensus 81 ~p~~~~~~HWlv~nIp~~-~~~~G~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~~l~~~~~~~R~~F~~~~F~~ 159 (190)
T 2iqy_A 81 DPKFREWHHFLVVNMKGN-DISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRK 159 (190)
T ss_dssp SCTTCCEEEEEEEEEETT-BGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCSCCBCTTCCTTCSSCCHHHHHH
T ss_pred CCCcCCEEEEEEeCCChh-ccccCccccceeCCCCcCCCCceEEEEEEEEeCCccCcchhhccCCCcccCCCcCHHHHHH
Confidence 999999999999999987 55678899999999997 568999999999999876642 2357899999999999
Q ss_pred HhCCCCceEEeEEEEeeCCcCC
Q 030480 153 DNGLQPPVAAVYFNSQKEVAVR 174 (176)
Q Consensus 153 ~~~L~~pva~~~f~~~~d~~~~ 174 (176)
+++|+.|||+|||++|||+.|.
T Consensus 160 ~~~Lg~pVA~~fF~~q~d~~v~ 181 (190)
T 2iqy_A 160 KYHLGAPVAGTCFQAEWDDSVP 181 (190)
T ss_dssp HTTCCSCSEEEEEEECCCTTHH
T ss_pred HhCCCCeeEEEEEEEEccCchH
Confidence 9999999999999999999774
No 4
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-46 Score=290.31 Aligned_cols=161 Identities=42% Similarity=0.770 Sum_probs=144.4
Q ss_pred CCceeccCCCCCCCeEEEEEEC-CeeecCCCccCCCcCCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEE
Q 030480 11 GRVIGDVVDMFTPATEMTVHYG-TKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHW 89 (176)
Q Consensus 11 ~~i~pdvl~~F~P~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHw 89 (176)
++||||+|+. .|+..|+|+|+ +..|.+|+.|+++++..+|+|+|++.+.+ .++|||+|+|||+|++.++++++|+||
T Consensus 2 ~~vipdvl~~-~P~~~l~V~y~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~-t~~ytlvm~DpDaP~~~~p~~~~~~HW 79 (179)
T 2jyz_A 2 DDIVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGK-SNLLTLLMVDPDAPTRQDPKYREILHW 79 (179)
T ss_dssp CCBTTTTBSS-CCSEECEEESSSSCCBCTTEECCSSCTTSCCEEECTTTCCS-CSEEEEEEECCCSSCTTCCSSCCCSCC
T ss_pred CcccCcCcCC-CCcCeEEEEECCCcccCCCCEeCHHHhccCCeEEEeCCCCC-ceeEEEEEeCCCCCCCccCCCccEEEE
Confidence 6899999999 99999999997 48899999999999999999999987642 378999999999999999999999999
Q ss_pred EEEecCCCc-CCCCCceeecccCCCCC--CCCceEEEEEEeeCCCcccCC-----CCCCCCCCcCHHHHHHHhCCCCceE
Q 030480 90 IVVDIPEGS-DATKGKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGC-----RPPDARSNFSTRRFAADNGLQPPVA 161 (176)
Q Consensus 90 lv~ni~~~~-~~~~g~~~~~Y~~P~P~--~G~HRYvfll~~q~~~~~~~~-----~~~~~R~~F~~~~f~~~~~L~~pva 161 (176)
|++||+++. ....|..+++|.||+|+ +|.|||+|+||+|+..+. .. .....|.+||+++|+++++|+.|||
T Consensus 80 lv~nIp~~~~~l~~g~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~-~~~~l~~~~~~~R~~F~~~~F~~~~~Lg~pvA 158 (179)
T 2jyz_A 80 SVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTISNTTRTGRLNFNARDFAAKHGLGEPIA 158 (179)
T ss_dssp EEECCCTTSSSTTSSEEEECCCSCCSCGGGCSEEEEEEEEEECSCCC-CSSCBCTTCCSSSCCCCTHHHHHHTTCCSCSE
T ss_pred EEECCCCCccccCcccccccccCCCCCCCCCceEEEEEEEEcCCcCC-chhhccCCCcccCCCcCHHHHHHHhCCCCccE
Confidence 999999874 45678899999999997 568999999999998776 21 2357899999999999999999999
Q ss_pred EeEEEEeeCCcCC
Q 030480 162 AVYFNSQKEVAVR 174 (176)
Q Consensus 162 ~~~f~~~~d~~~~ 174 (176)
||||++|||+.|.
T Consensus 159 ~~~F~~q~d~~v~ 171 (179)
T 2jyz_A 159 ANYYQAQYDDYVP 171 (179)
T ss_dssp EEEEEECCCTHHH
T ss_pred EEEEEEEecCchH
Confidence 9999999999764
No 5
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=100.00 E-value=7.6e-45 Score=284.87 Aligned_cols=166 Identities=25% Similarity=0.446 Sum_probs=143.9
Q ss_pred cccccccccCCceeccCC--CCCCCeEEEEEEC-CeeecCCCccCCCcCCCCCe-EEEeCCCCCCCceEEEEEEcCCCCC
Q 030480 2 ARSMEPLVVGRVIGDVVD--MFTPATEMTVHYG-TKQVANGCEIKPSASADKPS-VQIHAPPPASSNLYTLVMVDPDAPS 77 (176)
Q Consensus 2 ~~~~~~l~~~~i~pdvl~--~F~P~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~-i~~~~~~~~~~~~ytlvmvDpD~p~ 77 (176)
+.++++|++++||||+|+ .|.|++.|+|+|+ +..|.+|+.|+++++..+|+ |+|++.+. ..++|||+|+|||+|+
T Consensus 12 ~~~~~~l~~~~IipDvl~~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~-~~~~ytLvm~DPDaP~ 90 (200)
T 2gzq_A 12 PPTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPP-EDYCYILFMIDPDFPS 90 (200)
T ss_dssp SCCHHHHHHTTHHHHTSSSSCCCCCCCEEEEEETTEEECSSCEEESTTCSSCCSEEEESSCCC-TTEEEEEEEEETTCSC
T ss_pred HHHHHHHHhCCccCcccCCCCCcceeEEEEEECCCcccCCCCEeCHHHHhCCCceEEEccCCC-CCceEEEEEECCCCCC
Confidence 467899999999999996 4999999999998 68999999999999999999 99998753 3578999999999999
Q ss_pred CCCCCCceeEEEEEEecCCCcCCCCC-----ceeecccCCCCC--CCCceEEEEEE--eeCCCcccCC------CCCCCC
Q 030480 78 PSEPRYREWLHWIVVDIPEGSDATKG-----KELVAYMGPQPP--TGIHRYVFALF--NQKGKVMAGC------RPPDAR 142 (176)
Q Consensus 78 ~~~~~~~~~lHwlv~ni~~~~~~~~g-----~~~~~Y~~P~P~--~G~HRYvfll~--~q~~~~~~~~------~~~~~R 142 (176)
+.++++++|||||++||+++. ...| ..+++|.||+|+ +|.|||+|+|| +|+..+.+.. ....+|
T Consensus 91 ~~~~~~~~~~HWlv~nIp~~~-~~~g~~~~~~~~~~Y~gP~Pp~g~g~HRYvF~l~~fkQ~~~~~~~~~p~~~~~~~~~R 169 (200)
T 2gzq_A 91 RRRPDGRDYVHWAVSGIKSKE-LVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITR 169 (200)
T ss_dssp SSCCTTCSEEEEEEEEECSSE-EETTCCTTCEEEECCCCCCCCTTSCCEEEEEEEEEEEGGGTTCBTTBCCCCCGGGCCT
T ss_pred CCCCCCCCEEEEEEeCCCcCc-ccCCccCCCcceeeeeCCCCcCCCCcceEEEEEEEecccCcccccccCcccccccccc
Confidence 999999999999999999863 2233 379999999995 57899999985 9998877532 122479
Q ss_pred CCcCHH----HHHHHhCCCCceEEeEEEEeeC
Q 030480 143 SNFSTR----RFAADNGLQPPVAAVYFNSQKE 170 (176)
Q Consensus 143 ~~F~~~----~f~~~~~L~~pva~~~f~~~~d 170 (176)
.+||++ +|++++||+ |||+|||++|++
T Consensus 170 ~~F~~~~gv~~F~~~~gL~-pVganfF~~~n~ 200 (200)
T 2gzq_A 170 VKFNNCQSAYNVIQMNDMK-IVGFNWCQMRRK 200 (200)
T ss_dssp THHHHTCCHHHHHHHTTCE-EEEEEEEEEECC
T ss_pred CccccchhhHHHHHHcCCE-EEEEEEEEEecC
Confidence 999997 899999995 899999999974
No 6
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=100.00 E-value=3.4e-44 Score=285.08 Aligned_cols=167 Identities=34% Similarity=0.609 Sum_probs=143.5
Q ss_pred ccccccccCCceeccCCC--CCCCeEEEEEECC-eeecCCCccCCCcCCCCCeEEEeC----------CC---CCCCceE
Q 030480 3 RSMEPLVVGRVIGDVVDM--FTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHA----------PP---PASSNLY 66 (176)
Q Consensus 3 ~~~~~l~~~~i~pdvl~~--F~P~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~----------~~---~~~~~~y 66 (176)
.++++|++++||||||+. |.|+..|+|+|++ ..|.+|+.|++++++..|.|+|.. .- ....+.|
T Consensus 11 ~~~~~l~~~~IipDvl~~~~F~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 90 (220)
T 1wpx_B 11 ASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLF 90 (220)
T ss_dssp HHHHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCCE
T ss_pred HHHHHHHhCCCCccccCCcCCCCceEEEEEECCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCceE
Confidence 468999999999999998 9999999999987 779999999999999999998872 10 0235679
Q ss_pred EEEEEcCCCCCCCCCCCceeEEEEEEecCCCcC-------C---------CCC-ceeecccCCCCC--CCCceEEEEEEe
Q 030480 67 TLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSD-------A---------TKG-KELVAYMGPQPP--TGIHRYVFALFN 127 (176)
Q Consensus 67 tlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-------~---------~~g-~~~~~Y~~P~P~--~G~HRYvfll~~ 127 (176)
+|+|+|||+|++.++++++|+||+++||+++.. . +.| ..+.+|.||+|+ +|.|||+|+||+
T Consensus 91 ~lvm~DpDaP~~~~p~~~~~~HW~v~nIp~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~Y~gP~Pp~g~g~HRY~f~lya 170 (220)
T 1wpx_B 91 TLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYK 170 (220)
T ss_dssp EEEEEESSSSCSSCCTTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCcCcEEEEEEEccCCCccccccccCCCCccceEeecCCccccccccCCCCccCCCCceEEEEEEe
Confidence 999999999999999999999999999987521 0 235 678999999997 458999999999
Q ss_pred eCCCcccCC-CCCCCCCCcC-------HHHHHHHhCCCCceEEeEEEEeeC
Q 030480 128 QKGKVMAGC-RPPDARSNFS-------TRRFAADNGLQPPVAAVYFNSQKE 170 (176)
Q Consensus 128 q~~~~~~~~-~~~~~R~~F~-------~~~f~~~~~L~~pva~~~f~~~~d 170 (176)
|+..+.+.. ..+..|.+|+ +++|++++|| .|||+|||++|||
T Consensus 171 ~~~~l~~~~~~~~~~R~~f~~~~~~f~~~~F~~~~~L-~pVAanfF~~q~~ 220 (220)
T 1wpx_B 171 QPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QLVASNFFYAETK 220 (220)
T ss_dssp CCTTCCGGGSCCCCCSBGGGCCSSSCSHHHHHHTTTC-EEEEEEEEEECCC
T ss_pred cCCcCCccccCCcccccCCCccccchhHHHHHHHhCC-eEEEEEEEEEecC
Confidence 999877532 2467788888 9999999999 5899999999996
No 7
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=99.90 E-value=5.8e-23 Score=154.19 Aligned_cols=114 Identities=21% Similarity=0.420 Sum_probs=87.5
Q ss_pred CeeecCCCccCCCcC----CCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcC-CCCC----
Q 030480 33 TKQVANGCEIKPSAS----ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSD-ATKG---- 103 (176)
Q Consensus 33 ~~~v~~G~~l~~~~t----~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~g---- 103 (176)
+..+.+|..|+...+ ..+|.|+|++.+.+ .+.|+|+|+|||+|++.++ .++|+||+++||+++.+ ...|
T Consensus 8 S~~f~~g~~ip~~~t~~G~n~SP~l~w~~~P~~-tks~ali~~DpDAPs~~~~-~~~~~HWvv~nIp~~~~~l~~g~~~g 85 (153)
T 3n08_A 8 SQAFSYGRPIPKKYSCQGVGISPPLSFSDVPRE-AKSLVLIVEDPDVPPSVRE-DGLWIHWIVYNLSPVVSNLAEGAQIF 85 (153)
T ss_dssp BTTBCTTEECCGGGSTTSCCCCCCEEEECCCTT-CCEEEEEEEETTSCTTTCT-TSCEEEEEEEEECTTCCEECTTCCCS
T ss_pred CCCcCCCCCCCHHHcCCCCCcCcEEEEcCCCCC-CeEEEEEEECCCCCCccCC-CCcEEEEEEEcCCCCcccccCCCCCC
Confidence 445677888877765 47999999998754 4568999999999988765 37899999999998532 1111
Q ss_pred -------ceeecccCCCCCCCCceEEEEEEeeCCCcccCCCCCCCCCCcCHHHHHHHhC
Q 030480 104 -------KELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNG 155 (176)
Q Consensus 104 -------~~~~~Y~~P~P~~G~HRYvfll~~q~~~~~~~~~~~~~R~~F~~~~f~~~~~ 155 (176)
-....|.||+||.|.|||+|+||+|+..+.+. .++..+++.+...
T Consensus 86 ~~~g~n~~g~~~Y~GP~PP~g~HrY~F~vyAld~~L~l~-------~~~~~~~l~~a~~ 137 (153)
T 3n08_A 86 AVQGLNTAGEIGYCPPCPPDAKHRYYFYAYALDVVLSDE-------EGVTKEQLLEAMD 137 (153)
T ss_dssp SEECBCTTSSBSCCCCCCSSSCEEEEEEEEEESSCCCCC-------SSCCHHHHHHHHT
T ss_pred ceEeecCCCCccccCCcCcCCCEEEEEEEEEECCcCCCC-------CCCCHHHHHHHhh
Confidence 13589999999999999999999999876653 2566676666654
No 8
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=99.88 E-value=5.7e-23 Score=156.30 Aligned_cols=97 Identities=27% Similarity=0.575 Sum_probs=77.4
Q ss_pred CeeecCCCccCCCcCCC---------CCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcC-CCC
Q 030480 33 TKQVANGCEIKPSASAD---------KPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSD-ATK 102 (176)
Q Consensus 33 ~~~v~~G~~l~~~~t~~---------~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~ 102 (176)
+..+.+|+.|+...+.. +|.|+|++.+.+ .+.|+|+|+|||+|++ ++|+||+++|||++.. ...
T Consensus 7 S~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~-t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~ 80 (166)
T 1fux_A 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEG-TKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPV 80 (166)
T ss_dssp CSSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTT-CCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECT
T ss_pred ccCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCC-CeEEEEEEECCCCCCC-----CcEEEeEEeCcCCCcccccC
Confidence 56678999999988765 999999988654 4569999999999965 4799999999987631 111
Q ss_pred C------------c-------eeecccCCCCCCC--CceEEEEEEeeCC-CcccC
Q 030480 103 G------------K-------ELVAYMGPQPPTG--IHRYVFALFNQKG-KVMAG 135 (176)
Q Consensus 103 g------------~-------~~~~Y~~P~P~~G--~HRYvfll~~q~~-~~~~~ 135 (176)
| . ....|.||+||.| .|||+|+||+|+. .+.+.
T Consensus 81 g~~~~~~~~l~~g~~~g~nd~g~~~Y~GP~PP~g~g~HRY~F~lyald~~~l~l~ 135 (166)
T 1fux_A 81 DAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVD 135 (166)
T ss_dssp TTTCTTCTTSCTTCEECCCTTSSSSCCCBCCCTTCCCEECEEEEEEESCSCCCCC
T ss_pred CccccccccCCCCcEEeecCCCCccccCCCCcCCCCcEEEEEEEeEeccccCCCC
Confidence 1 1 3689999999765 7999999999997 57663
No 9
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=99.88 E-value=3.3e-22 Score=151.12 Aligned_cols=97 Identities=25% Similarity=0.598 Sum_probs=74.9
Q ss_pred CeeecCCCccCCCc---------CCCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcC-CCC
Q 030480 33 TKQVANGCEIKPSA---------SADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSD-ATK 102 (176)
Q Consensus 33 ~~~v~~G~~l~~~~---------t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~ 102 (176)
+..+.+|..|+... -..+|.|+|++.+.+ .+.|+|+|+|||+|++ ++|+||+++|||++.. ...
T Consensus 6 S~~f~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~-t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~ 79 (159)
T 1fjj_A 6 SNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAG-TKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQ 79 (159)
T ss_dssp CSSCCTTSBCCGGGBCSSTTCCCCCCCCCEEEECCCTT-CCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECT
T ss_pred ccCcCCcCCCChhHhccccccCCCCcCCeEEEcCCCCC-CeEEEEEEECCCCCCC-----CcEEEEEEEccCCCccccCC
Confidence 44566777777662 246999999988654 4568999999999975 4799999999997632 111
Q ss_pred -----------Cc-------eeecccCCCCCCC-CceEEEEEEeeCC-CcccC
Q 030480 103 -----------GK-------ELVAYMGPQPPTG-IHRYVFALFNQKG-KVMAG 135 (176)
Q Consensus 103 -----------g~-------~~~~Y~~P~P~~G-~HRYvfll~~q~~-~~~~~ 135 (176)
|. ....|.||+||.| .|||+|+||+|+. .+.+.
T Consensus 80 g~~~~~~~~~~g~~~g~n~~g~~~Y~GP~PP~g~~HRY~F~lyald~~~l~l~ 132 (159)
T 1fjj_A 80 GFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVD 132 (159)
T ss_dssp TGGGTSSCCCTTCEECBCTTSSBSCCCBCCSTTCCEEEEEEEEEESSSCCSCC
T ss_pred CcccccccCCCCcEEeecCCCCCcccCCCCcCCCceEEEEEEEEccCcccCCC
Confidence 11 3689999999988 7999999999997 57764
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=99.83 E-value=2.2e-20 Score=146.21 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=80.5
Q ss_pred CCCCeEEEeCCCCCCCceEEEEEEcCCCCCCCCCCCceeEEEEEEecCCCcCC---------------C----CCcee--
Q 030480 48 ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA---------------T----KGKEL-- 106 (176)
Q Consensus 48 ~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ni~~~~~~---------------~----~g~~~-- 106 (176)
..+|.|+|++. .+ .+.|+|+|+|||+|++. .++|+||+++||+.+... + .|...
T Consensus 58 ~~Sp~L~W~~~-~g-tks~aLvm~DPDAP~~~---g~~~~HWvv~NI~~~~l~eg~~~~~~g~~qG~N~~~~~~g~~~~~ 132 (207)
T 2evv_A 58 TYSPKISWQKV-EG-AQSYALELIDHDAQKVC---GMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLN 132 (207)
T ss_dssp CCCCCEEECCC-TT-CSEEEEEEEETTHHHHH---SSCEEEEEEEEECSSEECTTHHHHCSSSEECCCTTCSCSTTCSSC
T ss_pred CccceEEEecC-CC-CeEEEEEEECCCCCCCC---CCcEEEEEEeCCCCCccccCcccCCCCceeccccccccccccccc
Confidence 34568999887 33 56699999999999754 258999999999533210 1 23222
Q ss_pred -----------ecccCCCCCCCCceEEEEEEeeCC-CcccCCCCCCCCCCcCHHHHHHHhCCCCceEEeEEEEeeCCcCC
Q 030480 107 -----------VAYMGPQPPTGIHRYVFALFNQKG-KVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 174 (176)
Q Consensus 107 -----------~~Y~~P~P~~G~HRYvfll~~q~~-~~~~~~~~~~~R~~F~~~~f~~~~~L~~pva~~~f~~~~d~~~~ 174 (176)
..|.|||||.|.|||+|+||+|+. .+.+. .+|...++.+...=. -+|-.-++......||
T Consensus 133 ~~~k~~~~~~~~~Y~GP~PP~G~HRYvF~vyALd~~~L~l~-------~~~~~~~l~~am~gH-vLa~a~l~g~y~r~~~ 204 (207)
T 2evv_A 133 ESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALK-------APFFLGDLHDKMRNH-IIAIGRKEFLYKQFVR 204 (207)
T ss_dssp HHHHHHHHHHTCSCCCCCCSSSCEEEEEEEEEESSSCCCCC-------SSCCHHHHHHHHTTC-EEEEEEEEEEECCCC-
T ss_pred ccccccccccccccCCCCCCCCcEEEEEEEEEecCccCCCC-------CCCCHHHHHHHhhcC-eEEEEEEEEEEecccc
Confidence 789999999999999999999997 66553 456777776665532 3665556555555554
Q ss_pred C
Q 030480 175 K 175 (176)
Q Consensus 175 ~ 175 (176)
+
T Consensus 205 ~ 205 (207)
T 2evv_A 205 K 205 (207)
T ss_dssp -
T ss_pred c
Confidence 3
No 11
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=36.90 E-value=13 Score=18.65 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=8.7
Q ss_pred CHHHHHHHhCC.
Q 030480 146 STRRFAADNGL. 156 (176)
Q Consensus 146 ~~~~f~~~~~L. 156 (176)
++++|++++|+
T Consensus 15 ~Vk~fvR~~gi. 25 (25)
T 3ewt_E 15 QVKGFVRKNGVx 26 (26)
T ss_pred HHHHHHHHcCC.
Confidence 47889998875
No 12
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=27.17 E-value=37 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=21.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCceeEEEEEE
Q 030480 61 ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVV 92 (176)
Q Consensus 61 ~~~~~ytlvmvDpD~p~~~~~~~~~~lHwlv~ 92 (176)
++-+.|=||||||.-|.-.+. +-+.|+..
T Consensus 124 ~~yK~yEVILVDp~H~aIr~D---p~~nWI~~ 152 (194)
T 1ffk_I 124 GRYKWFEVILVDRDHPAIKSD---PQLSWVSR 152 (194)
T ss_pred CceeEEEEEEEcCCcHhhhcC---cccccccc
Confidence 456789999999988763332 56888875
Done!