Your job contains 1 sequence.
>030481
MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV
GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS
FRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAYGAYPVYGSHQQQVS
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030481
(176 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 426 5.3e-40 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 418 3.7e-39 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 417 4.8e-39 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 405 8.9e-38 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 400 3.0e-37 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 311 8.2e-28 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 303 5.7e-27 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 301 9.4e-27 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 295 4.0e-26 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 267 7.1e-23 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 198 7.8e-22 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 252 2.2e-21 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 247 2.0e-20 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 236 6.8e-19 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 192 3.4e-18 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 179 2.2e-15 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 178 6.4e-15 2
ZFIN|ZDB-GENE-040426-2298 - symbol:rbm22 "RNA binding mot... 155 1.8e-10 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 114 2.1e-10 3
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 153 3.7e-10 1
TAIR|locus:2043157 - symbol:MAC5B "MOS4-associated comple... 150 7.9e-10 1
UNIPROTKB|E7EW00 - symbol:U2SURP "U2 snRNP-associated SUR... 145 2.2e-09 1
UNIPROTKB|H0Y8D9 - symbol:U2SURP "U2 snRNP-associated SUR... 145 2.3e-09 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 116 2.4e-09 2
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 145 2.6e-09 1
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 148 3.5e-09 1
UNIPROTKB|F1NMD7 - symbol:RBM22 "Pre-mRNA-splicing factor... 143 3.5e-09 1
UNIPROTKB|Q5ZM16 - symbol:RBM22 "Pre-mRNA-splicing factor... 143 3.5e-09 1
RGD|1305770 - symbol:Rbm22 "RNA binding motif protein 22"... 143 3.5e-09 1
UNIPROTKB|F5GWK3 - symbol:RBM22 "Pre-mRNA-splicing factor... 142 3.5e-09 1
UNIPROTKB|Q7ZXB5 - symbol:rbm22 "Pre-mRNA-splicing factor... 142 4.4e-09 1
UNIPROTKB|F2Z4G3 - symbol:RBM22 "Pre-mRNA-splicing factor... 142 4.5e-09 1
UNIPROTKB|Q9NW64 - symbol:RBM22 "Pre-mRNA-splicing factor... 142 4.5e-09 1
UNIPROTKB|Q4R4J1 - symbol:RBM22 "Pre-mRNA-splicing factor... 142 4.5e-09 1
UNIPROTKB|Q5RAY5 - symbol:RBM22 "Pre-mRNA-splicing factor... 142 4.5e-09 1
MGI|MGI:1914060 - symbol:Rbm22 "RNA binding motif protein... 142 4.5e-09 1
UNIPROTKB|E2RG35 - symbol:RBM22 "Uncharacterized protein"... 142 4.5e-09 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 140 4.9e-09 1
UNIPROTKB|I3LRX5 - symbol:TIA1 "Uncharacterized protein" ... 134 5.3e-09 1
UNIPROTKB|Q3B7L8 - symbol:RBM22 "Pre-mRNA-splicing factor... 141 5.8e-09 1
UNIPROTKB|E1C0P9 - symbol:U2SURP "Uncharacterized protein... 145 7.5e-09 1
RGD|1307882 - symbol:U2surp "U2 snRNP-associated SURP dom... 145 7.5e-09 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 135 7.6e-09 1
UNIPROTKB|E2R1V3 - symbol:U2SURP "Uncharacterized protein... 145 7.9e-09 1
UNIPROTKB|E7ET15 - symbol:U2SURP "U2 snRNP-associated SUR... 145 7.9e-09 1
UNIPROTKB|O15042 - symbol:U2SURP "U2 snRNP-associated SUR... 145 7.9e-09 1
UNIPROTKB|F1SKE6 - symbol:U2SURP "Uncharacterized protein... 145 7.9e-09 1
MGI|MGI:1915208 - symbol:U2surp "U2 snRNP-associated SURP... 145 7.9e-09 1
UNIPROTKB|F1MHP1 - symbol:U2SURP "Uncharacterized protein... 145 8.0e-09 1
WB|WBGene00011722 - symbol:T11G6.8 species:6239 "Caenorha... 138 1.2e-08 1
UNIPROTKB|Q6P616 - symbol:rbm22 "Pre-mRNA-splicing factor... 138 1.2e-08 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 119 1.3e-08 2
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 137 1.3e-08 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 138 1.4e-08 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 143 1.4e-08 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 129 1.6e-08 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 137 1.7e-08 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 133 1.8e-08 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 133 1.9e-08 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 136 1.9e-08 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 120 2.0e-08 2
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 135 2.0e-08 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 135 2.1e-08 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 135 2.1e-08 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 135 2.1e-08 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 135 2.2e-08 1
TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi... 134 2.2e-08 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 135 2.2e-08 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 135 2.2e-08 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 135 2.2e-08 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 135 2.3e-08 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 135 2.3e-08 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 135 2.3e-08 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 135 2.3e-08 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 135 2.3e-08 1
ZFIN|ZDB-GENE-070912-400 - symbol:u2surp "U2 snRNP-associ... 140 2.4e-08 1
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 111 2.4e-08 2
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 127 2.6e-08 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 134 2.7e-08 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 114 2.8e-08 2
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 134 2.8e-08 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 134 2.8e-08 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 134 2.8e-08 1
UNIPROTKB|F1P555 - symbol:SFPQ "Uncharacterized protein" ... 121 2.9e-08 2
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 134 2.9e-08 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 134 4.1e-08 1
UNIPROTKB|D6RBQ9 - symbol:HNRNPD "Heterogeneous nuclear r... 125 4.2e-08 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 118 4.2e-08 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 112 4.4e-08 2
ASPGD|ASPL0000000406 - symbol:AN6501 species:162425 "Emer... 112 4.5e-08 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 113 5.0e-08 2
FB|FBgn0011305 - symbol:Rsf1 "Repressor splicing factor 1... 124 5.3e-08 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 122 5.9e-08 2
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 131 6.1e-08 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 121 6.2e-08 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 123 6.7e-08 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 131 6.8e-08 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 124 7.2e-08 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 131 7.2e-08 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 121 7.5e-08 2
WARNING: Descriptions of 892 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 101/189 (53%), Positives = 110/189 (58%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK A +SEGD+ NTTIFV
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFT-------RSEGDTINTTIFV 310
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPFS++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 311 GGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 121 FRAD-------------YGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXXXXXXXXXPV 167
R YGNQW +P P DP M P+
Sbjct: 371 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAPYY----PM 425
Query: 168 YGSHQQQVS 176
YG HQQQVS
Sbjct: 426 YGGHQQQVS 434
Score = 100 (40.3 bits), Expect = 0.00017, P = 0.00017
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 103 NAEEALHKLNGTVIGKQSFR 122
+A+ ++NG ++ R
Sbjct: 253 ERTKAMTEMNGVKCSSRAMR 272
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 92/193 (47%), Positives = 109/193 (56%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXX----XXXXXXXXXXXASNGAPGQGPQSEGDSSNT 56
MTEMNGVYCSSR MRIG ATP+K ASNGA G QS+GDSSNT
Sbjct: 236 MTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNT 295
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI 116
TIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP GKGCGFVQF++R +A+EA+ KL+G +I
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAII 355
Query: 117 GKQS-------------FRADYGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXXXXXXX 163
GKQ+ R D G+QW+ D M
Sbjct: 356 GKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGA 415
Query: 164 XXPVYGSHQQQVS 176
YG+HQQ VS
Sbjct: 416 SSNRYGNHQQPVS 428
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 33/91 (36%), Positives = 46/91 (50%)
Query: 45 QGPQSEGDSS--NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGKG--CGFV 96
Q P SS N TI++G L + + L FSQ GE+ SVKI G+ GFV
Sbjct: 71 QSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFV 130
Query: 97 QFANRENAEEALHKLNGTVIG--KQSFRADY 125
+F AE+ L NGT++ +Q FR ++
Sbjct: 131 EFNTHAAAEKVLQSYNGTMMPNTEQPFRLNW 161
Score = 100 (40.3 bits), Expect = 0.00016, P = 0.00016
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 46 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQF 98
G + S+ +IFVG L +VTD LR F S+Y + K+ V KG GFV+F
Sbjct: 167 GEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRF 226
Query: 99 ANRENAEEALHKLNGTVIGKQSFR 122
+ A+ ++NG ++ R
Sbjct: 227 GDESERSRAMTEMNGVYCSSRAMR 250
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 101/189 (53%), Positives = 110/189 (58%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK NG + P EGD NTTIFV
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYM----PNGTLTR-P--EGDIMNTTIFV 308
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPF+++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 309 GGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 121 FRAD-------------YGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXXXXXXXXXPV 167
R YGNQW +P P DP M P+
Sbjct: 369 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAPYY----PM 423
Query: 168 YGSHQQQVS 176
YG HQQQVS
Sbjct: 424 YGGHQQQVS 432
Score = 103 (41.3 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 103 NAEEALHKLNGTVIGKQSFR 122
+A+ ++NG ++ R
Sbjct: 251 ERTKAMTEMNGVKCSSRAMR 270
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 78/138 (56%), Positives = 98/138 (71%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXX-----XXXXXXXXXXXASNGAPGQGPQSEGDSSN 55
+TEMNG YCS+R MR+G ATP++ SNG+ G G QS+G+S+N
Sbjct: 261 LTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVGKGCGFVQFA+R++AE+A+ LNGTV
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTV 380
Query: 116 IGKQSFRADYGN----QW 129
IGK + R +G QW
Sbjct: 381 IGKNTVRLSWGRSPNKQW 398
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/104 (61%), Positives = 80/104 (76%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQF 98
SNG+ G G QS+G+S+N TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVGKGCGFVQF
Sbjct: 304 SNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQF 363
Query: 99 ANRENAEEALHKLNGTVIGKQS------------FRADYGNQWS 130
A+R++AE+A+ LNGTVIGK + +R D G QW+
Sbjct: 364 ADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
Score = 105 (42.0 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 57 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 109
++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F + AL
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 110 KLNGTVIGKQSFR 122
++NG + R
Sbjct: 263 EMNGAYCSNRQMR 275
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 76/133 (57%), Positives = 94/133 (70%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG +CSSR MR+G ATP++ + G G G S+G+S+N+TIFV
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VT+EDL QPFS +GE+ SVKIPVGKGCGFVQFANR++AEEA+ LNGTVIGK +
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNT 391
Query: 121 FRADYGN----QW 129
R +G QW
Sbjct: 392 VRLSWGRSPNKQW 404
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 69/126 (54%), Positives = 79/126 (62%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CS+RPMRIG A +K A+ P Q Q E D +NTTIFV
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQK-------ATYQNP-QATQGESDPNNTTIFV 286
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLDP V +E LRQ FS YGE+ VKI GK CGFVQF R +AE+AL LNGT +G QS
Sbjct: 287 GGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQS 346
Query: 121 FRADYG 126
R +G
Sbjct: 347 IRLSWG 352
Score = 105 (42.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFV 96
G G + + DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV
Sbjct: 165 GAGERRD-DSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFV 223
Query: 97 QFANRENAEEALHKLNGTVIGKQSFR 122
+FA+ A+ ++NG + + R
Sbjct: 224 KFADESEQLRAMTEMNGVLCSTRPMR 249
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 64/126 (50%), Positives = 79/126 (62%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG YCS+RPMRIG A + A+ G + D +NTTIFV
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAG--------DNDPNNTTIFV 264
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN+ +AE AL LNGT +G QS
Sbjct: 265 GGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQS 324
Query: 121 FRADYG 126
R +G
Sbjct: 325 IRLSWG 330
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 32/92 (34%), Positives = 43/92 (46%)
Query: 38 ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------G 90
A GA + Q+EG TIFVG L P VTD L F YG + K+ +
Sbjct: 138 AQAGAGEKRFQTEGPDH--TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRS 195
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122
KG GFV+FA+ A+ ++NG + R
Sbjct: 196 KGYGFVRFADENEQMRAMTEMNGQYCSTRPMR 227
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 64/126 (50%), Positives = 77/126 (61%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG YCSSRPMR G A +K QG E D +NTTIFV
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNT---------QGNSGESDPTNTTIFV 282
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
G +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+ANR AE+AL LNGT +G QS
Sbjct: 283 GAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 121 FRADYG 126
R +G
Sbjct: 343 IRLSWG 348
Score = 106 (42.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKI----PVG--KGCGFV 96
G G + + + T+FVG L P+VTD L + F Y + K+ G KG GFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 97 QFANRENAEEALHKLNGTVIGKQSFR 122
+FA+ A+ ++NG + R
Sbjct: 221 RFADESEQIRAMTEMNGQYCSSRPMR 246
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 64/126 (50%), Positives = 79/126 (62%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CS+RPMRIG A +K S+ A G ++ D +NTT+FV
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQ-----SSAA---GVTTDNDPNNTTVFV 265
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTD+ L+ FSQYGEI VKIP GK CGFVQF+ + AEEAL LNG +G +
Sbjct: 266 GGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTT 325
Query: 121 FRADYG 126
R +G
Sbjct: 326 VRLSWG 331
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 267 (99.0 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 60/132 (45%), Positives = 79/132 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX-----ASNGAPGQG--PQSEGDS 53
M EMNG+YCS+RPMRI AATP+K ++ AP Q E D
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG 113
+ TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF R +AEEA+ ++ G
Sbjct: 235 TCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 114 TVIGKQSFRADY 125
VIG+Q+ R +
Sbjct: 295 QVIGQQAVRISW 306
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 198 (74.8 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 38/75 (50%), Positives = 51/75 (68%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+FVGGL VT+++LR F +G+I VKIP GKGCGFVQF +R AE A++++
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQM 339
Query: 112 NGTVIGKQSFRADYG 126
G IG R +G
Sbjct: 340 QGYPIGNSRVRLSWG 354
Score = 83 (34.3 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ EM GVYC +RPMRI ATP+
Sbjct: 199 LVEMQGVYCGNRPMRISTATPK 220
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 252 (93.8 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 59/138 (42%), Positives = 75/138 (54%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASN-----GAPGQG----PQSEG 51
++EM GVYC +RPMRI ATP+ + GAP G PQ
Sbjct: 219 LSEMQGVYCGNRPMRISTATPKNKGPGVVPGGMGMPGPAGMYPPMGAPPMGFYGAPQPMN 278
Query: 52 ---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
D +NTT+FVGGL VT+++LR F +GEI VKIP GKGCGFVQF R AE A+
Sbjct: 279 QFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAI 338
Query: 109 HKLNGTVIGKQSFRADYG 126
+++ G IG R +G
Sbjct: 339 NQMQGYPIGNSRVRLSWG 356
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 247 (92.0 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 54/132 (40%), Positives = 75/132 (56%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR-KXXXXXXXXXXXXXXASNG--APGQGPQSEGDSSNTT 57
+ EM G C RP+R+G ATP+ K G + Q D++N+T
Sbjct: 245 LAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANST 304
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
+FVGGL V++E+L+ F +GEI VKIP GKGCGFVQF NR++AE A+++L G +G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 118 KQSFRADYG-NQ 128
R +G NQ
Sbjct: 365 NSRIRLSWGRNQ 376
Score = 113 (44.8 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 40 NGAPGQG--PQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---P---VG 90
N A G G +S +S +IFVG L PNV + D+ F S+Y S KI P V
Sbjct: 168 NWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVS 227
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122
+G GFV+F + + + AL ++ G + G + R
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIR 259
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 236 (88.1 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 47/129 (36%), Positives = 71/129 (55%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX--XXASNGAPGQGPQSEGDSSNTTI 58
+ M G C RP+RI A+P+ SN P Q S D NTT+
Sbjct: 241 LMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSM-DPLNTTV 299
Query: 59 FVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK 118
FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ++ + AE+A++ + G ++G
Sbjct: 300 FVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGT 359
Query: 119 QSFRADYGN 127
R +G+
Sbjct: 360 SHIRLAWGH 368
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 192 (72.6 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 40/82 (48%), Positives = 52/82 (63%)
Query: 45 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 104
QG Q D +NTT+FVGGL +V++ L F +G I VKIP GK CGFV+++NRE A
Sbjct: 511 QGQQFV-DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEA 569
Query: 105 EEALHKLNGTVIGKQSFRADYG 126
EEA+ + G VIG R +G
Sbjct: 570 EEAIAAMQGFVIGGNRVRLSWG 591
Score = 66 (28.3 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ EMNG + + RP+R+ ATPR
Sbjct: 314 LIEMNGAWFAGRPLRVALATPR 335
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 179 (68.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 112 NGTVIGKQSFRADYG 126
G ++G R +G
Sbjct: 416 QGFIVGGSPIRLSWG 430
Score = 49 (22.3 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ EM+G + R +R+ ATPR
Sbjct: 251 LIEMSGKWFQGRALRVAYATPR 272
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 178 (67.7 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+F+GGL VT+++LR F +G I VKIPVGK CGFVQ+ +R +AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 112 NGTVIGKQSFRADYG 126
G I R +G
Sbjct: 369 QGFPIANSRVRLSWG 383
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAEE 106
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F N + +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 107 ALHKLNGTVIGKQSFR 122
AL ++ G + ++ +
Sbjct: 221 ALSEMQGVFLNGRAIK 236
Score = 42 (19.8 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 1 MTEMNGVYCSSRPMRIG 17
++EM GV+ + R +++G
Sbjct: 222 LSEMQGVFLNGRAIKVG 238
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 155 (59.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N +I + +G
Sbjct: 288 FNKLIINGRRLNVKWG 303
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 114 (45.2 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL+P T+E +R+ F Q+GEI ++++P+ +G F+ F + ++ L K
Sbjct: 160 IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKK 219
Query: 112 NGTVIGKQ 119
TV G +
Sbjct: 220 FHTVSGSK 227
Score = 102 (41.0 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 40 NGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKG 92
NGA G Q S+ + +FVGGL + + +DL+ F+++GE+ I + +G
Sbjct: 57 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 116
Query: 93 CGFVQFANRENAEEAL----HKLNGTVI 116
GF+ F + + E+ L H+L+G VI
Sbjct: 117 FGFILFKDSSSVEKVLDQKEHRLDGRVI 144
Score = 38 (18.4 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 119 QSFRADYGNQWS 130
QS+ YGN W+
Sbjct: 265 QSWNQGYGNYWN 276
Score = 34 (17.0 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 42 APGQGPQSE-GDSSNTTIFVGG 62
+PG GP + G TT G
Sbjct: 33 SPGSGPATPAGSGGGTTAAPSG 54
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 153 (58.9 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 108 LHKL-NGTVIGKQSFRADYG 126
+L N VI Q + +G
Sbjct: 280 AQELSNRLVINGQRLKLTWG 299
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 150 (57.9 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 108 LHKL-NGTVIGKQSFRADYG 126
+L N V+ Q + +G
Sbjct: 280 AEELSNRLVVNGQRLKLTWG 299
>UNIPROTKB|E7EW00 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp IPI:IPI00979562 ProteinModelPortal:E7EW00 SMR:E7EW00
Ensembl:ENST00000488497 UCSC:uc011bnj.1 ArrayExpress:E7EW00
Bgee:E7EW00 Uniprot:E7EW00
Length = 425
Score = 145 (56.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 351
>UNIPROTKB|H0Y8D9 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp Ensembl:ENST00000463563 Bgee:H0Y8D9 Uniprot:H0Y8D9
Length = 439
Score = 145 (56.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 264 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 321
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 322 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 353
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 116 (45.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 163
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 164 MNGKEISGKIIF 175
Score = 34 (17.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 70 KMNGMLLNDRKVFVGRFKSRK 90
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 145 (56.1 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 34/93 (36%), Positives = 53/93 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---P---VGKGCGF 95
+PG P+++ SS+ IFVG L P + E LR+ F+ +GEI++ +I P KG F
Sbjct: 82 SPGNQPKTD-ISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAF 140
Query: 96 VQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
V F + AE A+ +NG IG +S R ++ +
Sbjct: 141 VSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTR 173
Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 39/129 (30%), Positives = 59/129 (45%)
Query: 4 MNGVYCSSRPMRIGAAT-----PRKXXXXXXXXXXXXXXASNGAPGQGPQ--------SE 50
MNG + SR +R +T PR+ NG+ +G Q ++
Sbjct: 156 MNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQ 215
Query: 51 GDSSNTTIFVGGLDPNVTDEDL-RQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL- 108
+NTT++ GG PNV +DL + F Q+G I V++ KG F++F +E A A+
Sbjct: 216 SSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIE 275
Query: 109 HKLNGTVIG 117
H N V G
Sbjct: 276 HTHNSEVHG 284
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 148 (57.2 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PV------- 89
S+ + G GD + T +++G L+P ++++ L + F +YG +AS+KI P
Sbjct: 199 SSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQR 258
Query: 90 GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
G+ CGFV + +R++AE AL LNG I R +G
Sbjct: 259 GRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWG 295
>UNIPROTKB|F1NMD7 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent
protein binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 IPI:IPI00593663 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AADN02028638 PRIDE:F1NMD7
Ensembl:ENSGALT00000007249 Uniprot:F1NMD7
Length = 420
Score = 143 (55.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>UNIPROTKB|Q5ZM16 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006913 "nucleocytoplasmic
transport" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0090316 "positive regulation of intracellular
protein transport" evidence=ISS] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AJ719568 IPI:IPI00593663
RefSeq:NP_001006151.1 UniGene:Gga.4751 HSSP:Q6PHZ5
ProteinModelPortal:Q5ZM16 SMR:Q5ZM16 STRING:Q5ZM16 GeneID:416270
KEGG:gga:416270 InParanoid:Q5ZM16 NextBio:20819755 Uniprot:Q5ZM16
Length = 420
Score = 143 (55.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>RGD|1305770 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10116
"Rattus norvegicus" [GO:0000060 "protein import into nucleus,
translocation" evidence=IEA;ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017069 "snRNA binding"
evidence=ISO;ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISO;ISS] [GO:0033554 "cellular response to stress"
evidence=ISO;ISS] [GO:0036002 "pre-mRNA binding" evidence=ISO;ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS]
[GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305770 GO:GO:0005634 GO:GO:0005737 GO:GO:0033554 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000060
GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:BC097991 IPI:IPI00194439
RefSeq:NP_001020847.1 UniGene:Rn.105130 ProteinModelPortal:Q4V7D7
SMR:Q4V7D7 STRING:Q4V7D7 PRIDE:Q4V7D7 Ensembl:ENSRNOT00000026087
GeneID:307410 KEGG:rno:307410 UCSC:RGD:1305770 InParanoid:Q4V7D7
NextBio:657353 Genevestigator:Q4V7D7 GermOnline:ENSRNOG00000019235
Uniprot:Q4V7D7
Length = 420
Score = 143 (55.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>UNIPROTKB|F5GWK3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC008453
IPI:IPI00909290 HGNC:HGNC:25503 ProteinModelPortal:F5GWK3
SMR:F5GWK3 Ensembl:ENST00000540000 ArrayExpress:F5GWK3 Bgee:F5GWK3
Uniprot:F5GWK3
Length = 371
Score = 142 (55.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 179 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 238
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 239 FNKLIVNGRRLNVKWG 254
>UNIPROTKB|Q7ZXB5 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0017069
KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:BC045067 RefSeq:NP_001080776.1
UniGene:Xl.4959 ProteinModelPortal:Q7ZXB5 SMR:Q7ZXB5 GeneID:380469
KEGG:xla:380469 Xenbase:XB-GENE-971204 Uniprot:Q7ZXB5
Length = 417
Score = 142 (55.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R++AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>UNIPROTKB|F2Z4G3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
UniGene:Bt.28600 GeneTree:ENSGT00390000002792 EMBL:DAAA02020630
IPI:IPI00716918 ProteinModelPortal:F2Z4G3 SMR:F2Z4G3 PRIDE:F2Z4G3
Ensembl:ENSBTAT00000042873 NextBio:20925883 Uniprot:F2Z4G3
Length = 420
Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>UNIPROTKB|Q9NW64 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000060 "protein import into nucleus,
translocation" evidence=IDA] [GO:0048306 "calcium-dependent protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IDA] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=IDA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IDA]
[GO:0017069 "snRNA binding" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0005737 EMBL:CH471062 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 EMBL:AC008453
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW
EMBL:AL136933 EMBL:AK001152 EMBL:AK297019 EMBL:BC003402 EMBL:U39402
IPI:IPI00019046 IPI:IPI00909290 RefSeq:NP_060517.1
UniGene:Hs.713564 PDB:2YTC PDBsum:2YTC ProteinModelPortal:Q9NW64
SMR:Q9NW64 IntAct:Q9NW64 STRING:Q9NW64 PhosphoSite:Q9NW64
DMDM:74762758 PaxDb:Q9NW64 PRIDE:Q9NW64 DNASU:55696
Ensembl:ENST00000199814 Ensembl:ENST00000447771 GeneID:55696
KEGG:hsa:55696 UCSC:uc003lst.3 GeneCards:GC05M150050
HGNC:HGNC:25503 HPA:HPA001634 MIM:612430 neXtProt:NX_Q9NW64
PharmGKB:PA134982384 InParanoid:Q9NW64 EvolutionaryTrace:Q9NW64
GenomeRNAi:55696 NextBio:60521 ArrayExpress:Q9NW64 Bgee:Q9NW64
CleanEx:HS_RBM22 Genevestigator:Q9NW64 GermOnline:ENSG00000086589
Uniprot:Q9NW64
Length = 420
Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>UNIPROTKB|Q4R4J1 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9541
"Macaca fascicularis" [GO:0005487 "nucleocytoplasmic transporter
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0017069 "snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:AB169903
ProteinModelPortal:Q4R4J1 SMR:Q4R4J1 PRIDE:Q4R4J1 Uniprot:Q4R4J1
Length = 420
Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>UNIPROTKB|Q5RAY5 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9601
"Pongo abelii" [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0033120
"positive regulation of RNA splicing" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 HSSP:Q6PHZ5
EMBL:CR858876 RefSeq:NP_001125624.1 UniGene:Pab.12645
ProteinModelPortal:Q5RAY5 SMR:Q5RAY5 GeneID:100172542
KEGG:pon:100172542 InParanoid:Q5RAY5 Uniprot:Q5RAY5
Length = 420
Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>MGI|MGI:1914060 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10090
"Mus musculus" [GO:0000060 "protein import into nucleus,
translocation" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=ISO] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO] [GO:0033554 "cellular response to stress"
evidence=ISO] [GO:0036002 "pre-mRNA binding" evidence=ISO]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048306
"calcium-dependent protein binding" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1914060 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:AK018452 EMBL:AK045116
EMBL:AK150271 EMBL:AK151758 EMBL:AK152252 EMBL:AK166600
EMBL:AK167509 EMBL:AK168919 EMBL:BC080205 IPI:IPI00221951
RefSeq:NP_080052.1 UniGene:Mm.275106 ProteinModelPortal:Q8BHS3
SMR:Q8BHS3 STRING:Q8BHS3 PhosphoSite:Q8BHS3 PaxDb:Q8BHS3
PRIDE:Q8BHS3 Ensembl:ENSMUST00000025506 GeneID:66810 KEGG:mmu:66810
UCSC:uc008fal.1 InParanoid:Q8BHS3 ChiTaRS:RBM22 NextBio:322703
Bgee:Q8BHS3 CleanEx:MM_RBM22 Genevestigator:Q8BHS3
GermOnline:ENSMUSG00000024604 Uniprot:Q8BHS3
Length = 420
Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>UNIPROTKB|E2RG35 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
GeneTree:ENSGT00390000002792 EMBL:AAEX03003093
ProteinModelPortal:E2RG35 Ensembl:ENSCAFT00000028740 Uniprot:E2RG35
Length = 422
Score = 142 (55.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 230 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 289
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 290 FNKLIVNGRRLNVKWG 305
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 140 (54.3 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 35/126 (27%), Positives = 62/126 (49%)
Query: 3 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFVGG 62
+MNG + R +R AT RK +S + ++ SN T++ GG
Sbjct: 157 QMNGQWLGGRQIRTNWAT-RKPSAPKSNNEGA---SSKHLSYEEVLNQSSPSNCTVYCGG 212
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122
+ ++D+ +RQ FS +G+I +++ KG FV+F + E A A+ +NGT I + +
Sbjct: 213 IASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVK 272
Query: 123 ADYGNQ 128
+G +
Sbjct: 273 CYWGKE 278
Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P ++ +D+R F+ +G+I+ ++ GK G
Sbjct: 81 NWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GF+ F N+ +AE A+ ++NG +G + R ++ +
Sbjct: 141 GFISFINKWDAESAIQQMNGQWLGGRQIRTNWATR 175
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 41 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 100
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 101 VSVNGTTIEGHVVKCYWGKE 120
>UNIPROTKB|Q3B7L8 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISS] [GO:0090316
"positive regulation of intracellular protein transport"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
EMBL:BC107551 IPI:IPI00709529 RefSeq:NP_001032907.1
UniGene:Bt.28600 ProteinModelPortal:Q3B7L8 SMR:Q3B7L8 PRIDE:Q3B7L8
GeneID:512330 KEGG:bta:512330 CTD:55696 HOVERGEN:HBG083475
InParanoid:Q3B7L8 OrthoDB:EOG40S0FW NextBio:20870344 Uniprot:Q3B7L8
Length = 420
Score = 141 (54.7 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKFIVNGRRLNVKWG 303
>UNIPROTKB|E1C0P9 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AADN02024092 EMBL:AADN02024093
EMBL:AADN02024094 IPI:IPI00583949 ProteinModelPortal:E1C0P9
Ensembl:ENSGALT00000004113 Uniprot:E1C0P9
Length = 985
Score = 145 (56.1 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 219 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 276
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 277 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 308
>RGD|1307882 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
RGD:1307882 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 GeneTree:ENSGT00390000010687
IPI:IPI00370764 RefSeq:XP_002727165.1 RefSeq:XP_002730000.1
ProteinModelPortal:D4A4B4 Ensembl:ENSRNOT00000011609 GeneID:315903
KEGG:rno:315903 UCSC:RGD:1307882 NextBio:670025 ArrayExpress:D4A4B4
Uniprot:D4A4B4
Length = 985
Score = 145 (56.1 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 218 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 275
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 276 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 307
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 135 (52.6 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 75 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 134
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 135 VSVNGTTIEGHVVKCYWGKE 154
>UNIPROTKB|E2R1V3 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AAEX03013650
Ensembl:ENSCAFT00000012763 Uniprot:E2R1V3
Length = 1028
Score = 145 (56.1 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 261 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 318
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 319 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 350
>UNIPROTKB|E7ET15 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AC018450
EMBL:AC026304 HGNC:HGNC:30855 ChiTaRS:u2surp IPI:IPI00966302
ProteinModelPortal:E7ET15 SMR:E7ET15 Ensembl:ENST00000493598
ArrayExpress:E7ET15 Bgee:E7ET15 Uniprot:E7ET15
Length = 1028
Score = 145 (56.1 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 261 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 318
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 319 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 350
>UNIPROTKB|O15042 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 HSSP:Q9NQ94 EMBL:AC018450 EMBL:AC026304 EMBL:BC006474
EMBL:BC016323 EMBL:BC105604 EMBL:BC111692 EMBL:AB002330
EMBL:BK000564 IPI:IPI00143753 IPI:IPI00790699 IPI:IPI00829908
RefSeq:NP_001073884.1 UniGene:Hs.596572 ProteinModelPortal:O15042
SMR:O15042 IntAct:O15042 STRING:O15042 PhosphoSite:O15042
PaxDb:O15042 PRIDE:O15042 Ensembl:ENST00000319822
Ensembl:ENST00000397933 Ensembl:ENST00000473835 GeneID:23350
KEGG:hsa:23350 UCSC:uc003evh.1 UCSC:uc003evi.1 UCSC:uc003evk.1
CTD:23350 GeneCards:GC03P142720 H-InvDB:HIX0003746 HGNC:HGNC:30855
HPA:HPA037545 neXtProt:NX_O15042 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 InParanoid:O15042 KO:K12842
OMA:SILQANS OrthoDB:EOG47SSD9 ChiTaRS:u2surp GenomeRNAi:23350
NextBio:45335 PMAP-CutDB:O15042 ArrayExpress:O15042 Bgee:O15042
Genevestigator:O15042 Uniprot:O15042
Length = 1029
Score = 145 (56.1 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 351
>UNIPROTKB|F1SKE6 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:FP236268 RefSeq:XP_003358644.1
Ensembl:ENSSSCT00000012792 GeneID:100517309 KEGG:ssc:100517309
Uniprot:F1SKE6
Length = 1029
Score = 145 (56.1 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 351
>MGI|MGI:1915208 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
MGI:MGI:1915208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 CTD:23350 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 KO:K12842 OMA:SILQANS
OrthoDB:EOG47SSD9 EMBL:AC159895 EMBL:BC068265 EMBL:AK011588
EMBL:AK011796 IPI:IPI00411097 IPI:IPI00467507 IPI:IPI00830853
RefSeq:NP_001108449.1 RefSeq:NP_080752.2 UniGene:Mm.292742
UniGene:Mm.392755 HSSP:Q01085 ProteinModelPortal:Q6NV83 SMR:Q6NV83
STRING:Q6NV83 PhosphoSite:Q6NV83 PaxDb:Q6NV83 PRIDE:Q6NV83
Ensembl:ENSMUST00000078374 Ensembl:ENSMUST00000079659 GeneID:67958
KEGG:mmu:67958 UCSC:uc009rba.2 UCSC:uc009rbb.2 UCSC:uc009rbd.1
GeneTree:ENSGT00390000010687 InParanoid:Q6NV83 NextBio:326070
Bgee:Q6NV83 CleanEx:MM_2610101N10RIK Genevestigator:Q6NV83
Uniprot:Q6NV83
Length = 1029
Score = 145 (56.1 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 351
>UNIPROTKB|F1MHP1 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 OMA:SILQANS GeneTree:ENSGT00390000010687
EMBL:DAAA02002870 IPI:IPI00701440 Ensembl:ENSBTAT00000012063
Uniprot:F1MHP1
Length = 1035
Score = 145 (56.1 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
CGFV F NR +AE AL LNG +I SF G
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMI--MSFEMKLG 351
>WB|WBGene00011722 [details] [associations]
symbol:T11G6.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GeneTree:ENSGT00390000002792 EMBL:Z69384 PIR:T24851
RefSeq:NP_502014.2 ProteinModelPortal:Q22412 SMR:Q22412
STRING:Q22412 PaxDb:Q22412 EnsemblMetazoa:T11G6.8.1
EnsemblMetazoa:T11G6.8.2 GeneID:177979 KEGG:cel:CELE_T11G6.8
UCSC:T11G6.8.1 CTD:177979 WormBase:T11G6.8 InParanoid:Q22412
OMA:CAFVQYT NextBio:899214 Uniprot:Q22412
Length = 408
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPN----VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQ 97
AP P + D++ TT+++G L P+ VT++DL F QYG+I +++ KGC F++
Sbjct: 223 APTLSPPA--DTTITTLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIE 280
Query: 98 FANRENAEEALHK-LNGTVI-GKQ 119
F RE AE A + N T I GK+
Sbjct: 281 FTTREAAERAAERSFNKTFIKGKR 304
>UNIPROTKB|Q6P616 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:RNRAHIC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:CR761977 EMBL:BC062518
RefSeq:NP_989108.1 UniGene:Str.5987 ProteinModelPortal:Q6P616
SMR:Q6P616 STRING:Q6P616 Ensembl:ENSXETT00000044114 GeneID:394713
KEGG:xtr:394713 Xenbase:XB-GENE-971198 InParanoid:Q6P616
Bgee:Q6P616 Uniprot:Q6P616
Length = 417
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 119 (46.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 40 NGAPGQGPQSEGDSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV-- 89
NG G+ S+ D+S +FVGGL + T +DL+ F+++GE+ ++K+ P+
Sbjct: 33 NGGQGEAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTG 92
Query: 90 -GKGCGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
+G GFV F E+ E+ + HKLNG VI + +A
Sbjct: 93 RSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKA 131
Score = 98 (39.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 110
IFVGGL P+ +E +R+ F YGE+ S+++P+ +G F+ F E ++ + K
Sbjct: 141 IFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK 199
Score = 35 (17.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 119 QSFRADYGNQWS 130
Q++ YGN W+
Sbjct: 244 QNWNQGYGNYWN 255
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
S+ +N T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+
Sbjct: 207 SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAI 266
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 267 VSVNGTTIEGHVVKCYWGKE 286
Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEE 106
S + +FVG L +V++E L+ F+++GE++ K+ KG GFV F N++NAE
Sbjct: 222 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 281
Query: 107 ALHKLNGTVIGKQSFRADY 125
A+ +NG IGK++ R ++
Sbjct: 282 AIAGMNGKWIGKRAVRTNW 300
Score = 131 (51.2 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112
+ NT+++VG + TD DLR FS YG+IA V+I + FV++ +E A +A+ ++N
Sbjct: 324 ADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMN 383
Query: 113 GTVIGKQSFRADYG 126
G + R +G
Sbjct: 384 GKEMAGNQVRCSWG 397
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 143 (55.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
+S + I++G + N+ ++++R+ +YGEI S++I K C FV F N NA AL L
Sbjct: 1007 NSISRAIYIGNVSDNLPEKEIRKECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTL 1066
Query: 112 NGTVIGKQSFRADYG 126
NG +G R +YG
Sbjct: 1067 NGKKLGDTIVRVNYG 1081
Score = 111 (44.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 103
G G + E + ++VG + +V+++DL+ F +GE+ SV+I K C FV F +
Sbjct: 903 GDG-EDEDHLPSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFVNFKDTNE 961
Query: 104 AEEALHKLNGTVIGKQ 119
A A ++ V+G Q
Sbjct: 962 AINAKKGMHNQVLGSQ 977
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVGGL+ T+E L Q FS+YG++A V + +G GFV F N E+A++A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 112 NGTVIGKQSFRADYGNQWS 130
NG + + R D + S
Sbjct: 68 NGKSVDGRQIRVDQAGKSS 86
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 43 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFV 96
PG+ S + +FVG L + LR+ F ++GE++ KI GKG GFV
Sbjct: 119 PGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 97 QFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
+ RE+AE A+ ++NG +G+++ R ++ +
Sbjct: 179 SYPRREDAERAIDEMNGAWLGRRTIRTNWATR 210
Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 3 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGP---QSE--------- 50
EMNG + R +R AT RK G G+ QSE
Sbjct: 192 EMNGAWLGRRTIRTNWAT-RKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQ 250
Query: 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 110
+ NT+++VG + N+ ++++R+ F ++G I V+ +G FV+F +E+A A+ +
Sbjct: 251 AAADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQ 309
Query: 111 LNGTVIGKQSFRADYG 126
+N IG Q R +G
Sbjct: 310 MNNADIGGQIVRCSWG 325
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 133 (51.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 75 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 134
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ ++ G +G + R ++ +
Sbjct: 135 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 169
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 133 (51.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ ++ G +G + R ++ +
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 136 (52.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 30/93 (32%), Positives = 54/93 (58%)
Query: 43 PGQGPQSEGDSS-NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGF 95
PGQ QS+ D++ + +FVG L V ++ LR+ F +G+++ K+ KG GF
Sbjct: 122 PGQ-QQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGF 180
Query: 96 VQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
V + RE AE A+ ++NG +G+++ R ++ +
Sbjct: 181 VSYPKREEAERAIEQMNGQWLGRRTIRTNWATR 213
Score = 133 (51.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 27/79 (34%), Positives = 51/79 (64%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
Q+ GD NT+++VG + ++T++++RQ F+ +G I V+I +G FV+F N++ A +A
Sbjct: 235 QTSGD--NTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 291
Query: 108 LHKLNGTVIGKQSFRADYG 126
+ ++N +G Q R +G
Sbjct: 292 IVQMNNQDVGGQLVRCSWG 310
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 120 (47.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++ DE LR+ F+ YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIG 117
++G
Sbjct: 356 RIVG 359
Score = 99 (39.9 bits), Expect = 0.00068, P = 0.00068
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALHK 110
T I+V L +V + L+ FSQ+G+I SVK+ G +G GFV F E+A++A+
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 111 LNG 113
+NG
Sbjct: 251 MNG 253
Score = 41 (19.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+T+MNG S R + +G A R
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKR 269
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 275 VSVNGTTIEGHVVKCYWGKE 294
Score = 130 (50.8 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 275 VSVNGTTIEGHVVKCYWGKE 294
Score = 130 (50.8 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
S+ N T++ GG+ +T++ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 196 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 255
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 256 VSVNGTTIEGHVVKCYWGKE 275
Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ ++ G +G + R ++ +
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 258 VSVNGTTIEGHVVKCYWGKE 277
Score = 130 (50.8 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 258 VSVNGTTIEGHVVKCYWGKE 277
Score = 130 (50.8 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 134 (52.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PV-GKGCGFVQFANRENAEE 106
D N+ ++VGGL ++T+E +R+ FS YG + +VKI V GK GFV F+NR +A++
Sbjct: 4 DDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADD 62
Query: 107 ALHKLNGTVIGKQSFRAD 124
A+ ++G IG ++ R +
Sbjct: 63 AIEDMDGKSIGGRAVRVN 80
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
S+ N T++ GG+ +T++ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 203 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 262
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 263 VSVNGTTIEGHVVKCYWGKE 282
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 164 GGQWLGGRQIRTNWATR 180
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T +D+R F+ +G I+ ++ GK G
Sbjct: 80 NWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGY 139
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ ++ G +G + R ++ +
Sbjct: 140 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 174
Score = 131 (51.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I V++ KG FV+F + E+A A+
Sbjct: 197 NQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAI 256
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT + + +G +
Sbjct: 257 VSVNGTSLEGHIVKCYWGKE 276
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 214 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 273
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 274 VSVNGTTIEGHVVKCYWGKE 293
Score = 130 (50.8 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 97 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 156
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 157 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 191
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 275 VSVNGTTIEGHVVKCYWGKE 294
Score = 130 (50.8 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 275 VSVNGTTIEGHVVKCYWGKE 294
Score = 130 (50.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 275 VSVNGTTIEGHVVKCYWGKE 294
Score = 130 (50.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 275 VSVNGTTIEGHVVKCYWGKE 294
Score = 130 (50.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 275 VSVNGTTIEGHVVKCYWGKE 294
Score = 130 (50.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
>ZFIN|ZDB-GENE-070912-400 [details] [associations]
symbol:u2surp "U2 snRNP-associated SURP domain
containing" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070912-400 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 EMBL:BX248497 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 OMA:SILQANS
OrthoDB:EOG47SSD9 GeneTree:ENSGT00390000010687 IPI:IPI00613709
UniGene:Dr.75427 Ensembl:ENSDART00000132651 Uniprot:B0S5J3
Length = 923
Score = 140 (54.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG------- 90
+ APG GD + T +++G ++P + +E L Q F +YG +ASVKI P
Sbjct: 194 DSAPGS--HDVGDPTTTNLYLGNINPQMNEEMLCQEFGRYGPLASVKIMWPRTDEERARE 251
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
+ CGFV F R +AE AL LNG +I + +G
Sbjct: 252 RNCGFVAFMTRRDAERALKHLNGKMIMNFEMKLGWG 287
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 111 (44.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL+P T+E +R+ F ++GEI ++++P+ +G F+ F E ++ L K
Sbjct: 86 IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKK 145
Query: 112 NGTVIGKQ 119
T+ G +
Sbjct: 146 FHTISGSK 153
Score = 38 (18.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 119 QSFRADYGNQWS 130
QS+ YGN W+
Sbjct: 198 QSWNQGYGNYWN 209
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 42 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 101
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRAD 124
GFV F N+ +AE A+ + G +G + R +
Sbjct: 102 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 132
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 134 (52.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 196 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 255
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 256 VSVNGTTIEGHVVKCYWGKE 275
Score = 133 (51.9 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ ++ G +G + R ++ +
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 114 (45.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL+P T+E +R+ F Q+GEI ++++P+ +G F+ F + ++ L K
Sbjct: 161 IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKK 220
Query: 112 NGTVIGKQ 119
TV G +
Sbjct: 221 FHTVSGSK 228
Score = 110 (43.8 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 32/111 (28%), Positives = 51/111 (45%)
Query: 17 GAATPRKXXXXXXXXXXXXXXASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQP 75
GAA P NGA G Q S+ + +FVGGL + + +DL+
Sbjct: 35 GAAAPATPAGSGGGTTAAPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDY 94
Query: 76 FSQYGEIASVKIPV------GKGCGFVQFANRENAEEAL----HKLNGTVI 116
F+++GE+ I + +G GF+ F + + E+ L H+L+G VI
Sbjct: 95 FTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVI 145
Score = 38 (18.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 119 QSFRADYGNQWS 130
QS+ YGN W+
Sbjct: 266 QSWNQGYGNYWN 277
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 267 VSVNGTTIEGHVVKCYWGKE 286
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 267 VSVNGTTIEGHVVKCYWGKE 286
Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 267 VSVNGTTIEGHVVKCYWGKE 286
Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
>UNIPROTKB|F1P555 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0000380 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AADN02043825 EMBL:AADN02043826 IPI:IPI00574618
Ensembl:ENSGALT00000003963 ArrayExpress:F1P555 Uniprot:F1P555
Length = 647
Score = 121 (47.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI- 116
+FVG L ++TDED ++ F++YGE V I GKG GF++ +R AE A +L+ T +
Sbjct: 239 LFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMR 298
Query: 117 GKQ 119
G+Q
Sbjct: 299 GRQ 301
Score = 39 (18.8 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 41 GAPGQGPQSE 50
G PG GP+SE
Sbjct: 57 GPPGGGPKSE 66
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 267 VSVNGTTIEGHVVKCYWGKE 286
Score = 124 (48.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 134 (52.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANREN 103
E S++ IFVG L V DE L Q FS +G ++ ++ G+ G GFV F +R +
Sbjct: 170 EDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSD 229
Query: 104 AEEALHKLNGTVIGKQSFRADYGNQ 128
AE+AL ++G +G ++ R ++ NQ
Sbjct: 230 AEKALSSMDGEWLGSRAIRCNWANQ 254
Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-P----VGKGCGFVQFANRENAEE 106
+ + ++VGGLD VT++ LRQ F G + +VKI P G GFV++ + A+
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADR 140
Query: 107 ALHKLNGTVIGKQSFRADYGNQ 128
A+ LNG + + R ++ Q
Sbjct: 141 AMQTLNGRRVHQSEIRVNWAYQ 162
Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TT +VG L P T D+ F +G + + +G F++ + ENA +A+ LNG
Sbjct: 302 TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYN 361
Query: 116 IGKQSFRADYG 126
+ + + +G
Sbjct: 362 VNGRPLKCSWG 372
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEG---DSSNTT-----IFVGGLDPNVTD 69
AAT AS G G +SEG D+S +F+GGL + T
Sbjct: 32 AATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTK 91
Query: 70 EDLRQPFSQYGEIA--SVKI-PV---GKGCGFVQFANRENAEEAL----HKLNGTVIGKQ 119
+DL+ FS++GE+ ++K+ P+ +G GFV F E+ ++ + HKLNG VI +
Sbjct: 92 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 151
Query: 120 SFRA 123
+A
Sbjct: 152 RAKA 155
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 118 (46.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
++V LD +V + L + FS++G I S K+ V KG GFV+F+ E A +A+ K+N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 113 GTVIGKQ 119
G ++G +
Sbjct: 285 GKMVGNK 291
Score = 106 (42.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVGKG----CGFVQFANRENAEEALHK 110
T ++V L TD DL++ F ++GEI S V + G+G GFV F E A A+ K
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 111 LNGTVIGKQ 119
+NG V+ ++
Sbjct: 179 MNGVVVDEK 187
Score = 98 (39.6 bits), Expect = 0.0010, P = 0.0010
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 41 GAPGQGPQSEGDSSNT-----TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VG 90
G P + SE D SN +FV LD ++ ++ L FS +G++ S K+ V
Sbjct: 11 GKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVS 70
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQ 119
KG GFVQF + + A + NGT+I Q
Sbjct: 71 KGYGFVQFYSDLSVYTACNFHNGTLIRNQ 99
Score = 35 (17.4 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 3 EMNGVYCSSRPMRIGAA 19
+MNGV + + +G A
Sbjct: 178 KMNGVVVDEKELHVGRA 194
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 112 (44.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL+P T+E +R+ F ++GEI ++++P+ +G F+ F E ++ L K
Sbjct: 156 IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKK 215
Query: 112 NGTVIGKQ 119
TV G +
Sbjct: 216 FHTVSGSK 223
Score = 101 (40.6 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 40 NGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKG 92
NGA G Q S+ + +FVGGL + + +DL+ F+++GE+ I + +G
Sbjct: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 93 CGFVQFANRENAEEAL----HKLNGTVI 116
GF+ F + + E+ L H+L+G VI
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVI 140
Score = 38 (18.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 119 QSFRADYGNQWS 130
QS+ YGN W+
Sbjct: 261 QSWNQGYGNYWN 272
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 112 (44.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASV-KIP-----VGKGCGFVQFANRENAEEALHKL 111
+FVG LDP VT++ L FS++G + ++ K+ + KG GFV FA+ E+++ A+ +
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANM 162
Query: 112 NGTVIGKQSFRADY 125
NG + + Y
Sbjct: 163 NGQYLMNKQVSVQY 176
Score = 39 (18.8 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 4 MNGVYCSSRPMRIGAATPRK 23
MNG+ +P+R+ A+ K
Sbjct: 74 MNGIRLYGKPIRVNKASADK 93
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 113 (44.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 224
Query: 114 TVI 116
++
Sbjct: 225 RIV 227
Score = 34 (17.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 29 KMNGMLLNDRKVFVGRFKSRK 49
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALH 109
GD T ++VG L V +DL F++YG++ SV I G FV+F +R++AE+A
Sbjct: 2 GDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACD 61
Query: 110 KLNGT-VIGKQ 119
LNG+ ++G Q
Sbjct: 62 ILNGSELLGSQ 72
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 122 (48.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++ DE LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIG 117
++G
Sbjct: 356 RILG 359
Score = 35 (17.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 EMNGVYCSSRPMRIGAATPR 22
+MNG S R + +G A R
Sbjct: 250 DMNGKEVSGRLLYVGRAQKR 269
Score = 34 (17.0 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRK 23
+T MNG+ + R + +G R+
Sbjct: 155 ITTMNGMLLNDRKVFVGHFKSRR 177
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 131 (51.2 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 23/80 (28%), Positives = 46/80 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +T+ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 216 NQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAI 275
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+NGT I + +G +
Sbjct: 276 VSVNGTTIEGHVVKCYWGKE 295
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T +D+R F+ +G+I+ ++ GK G
Sbjct: 99 NWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGY 158
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 159 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 193
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 121 (47.7 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 257
Query: 114 TVIGKQ 119
++G +
Sbjct: 258 RIVGSK 263
Score = 116 (45.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 152
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 153 MNGKEISGKIIF 164
Score = 99 (39.9 bits), Expect = 0.00059, P = 0.00059
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 62
Query: 114 TVI 116
++
Sbjct: 63 MLL 65
Score = 34 (17.0 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 59 KMNGMLLNDRKVFVGRFKSRK 79
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 123 (48.4 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++ DE LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIG 117
++G
Sbjct: 356 RIVG 359
Score = 33 (16.7 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ MNG S R + +G A R
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKR 269
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 131 (51.2 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 33/79 (41%), Positives = 42/79 (53%)
Query: 49 SEGDSSNTT--IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN 100
S GD+ N T IFVGGL P +TDE+ RQ F YG + V I +G GFV F +
Sbjct: 101 SGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Query: 101 RENAEEALHKLNGTVIGKQ 119
+ + LHK + GKQ
Sbjct: 161 EDAVDSVLHKTFHDLSGKQ 179
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 124 (48.7 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 131 (51.2 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 32/95 (33%), Positives = 51/95 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A G Q E SS+ IFVG L P VTD L Q FS + + ++ G+ G
Sbjct: 129 NWAYATG-QREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGF 187
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+++A+ A++++NG + + R ++ +
Sbjct: 188 GFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATK 222
Score = 112 (44.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 38/139 (27%), Positives = 59/139 (42%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXA--SNGAPGQGPQS------EGD 52
+ EMNG + SSR +R AT + G+ G ++ E +
Sbjct: 202 INEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENN 261
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVGKGCGFVQFANRENAEEALHK 110
S TT++VG L P VT DL + F G I V++ KG GFV++ A A+
Sbjct: 262 SQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQM 321
Query: 111 LNGT-VIGKQSFRADYGNQ 128
N + + + +GN+
Sbjct: 322 GNTQPYLFNRQIKCSWGNK 340
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 121 (47.7 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 114 TVIGKQ 119
++G +
Sbjct: 285 RIVGSK 290
Score = 113 (44.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 111 LNGTVI-GKQSF 121
+NG + GK F
Sbjct: 180 MNGKEMSGKSIF 191
Score = 34 (17.0 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 86 KMNGMLLNDRKVFVGRFKSRK 106
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 121 (47.7 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 116 (45.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 251 MNGKEISGKIIF 262
Score = 99 (39.9 bits), Expect = 0.00069, P = 0.00069
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 34 (17.0 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 131 (51.2 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANREN 103
E S++ IFVG L V DE L Q FS +G ++ ++ G+ G GFV F R +
Sbjct: 176 EDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERAD 235
Query: 104 AEEALHKLNGTVIGKQSFRADYGNQ 128
AE+AL ++G +G ++ R ++ NQ
Sbjct: 236 AEKALTSMDGEWLGSRAIRCNWANQ 260
Score = 123 (48.4 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-PV----GKGC--G 94
A G ++ + + ++VGGLDP VT++ L+Q F G + SVKI P KG G
Sbjct: 76 AGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYG 135
Query: 95 FVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
FV+F + AE A+ LNG I + R ++ Q
Sbjct: 136 FVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQ 169
Score = 106 (42.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TT +VG L P T D+ F +G + ++ +G F++ ENA A+ +LNG
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYN 367
Query: 116 IGKQSFRADYG 126
+ + + +G
Sbjct: 368 VNGRPLKCSWG 378
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +F+GGL+ + +E L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 62 AMMAMNGKAVDGRQIRVDQAGKSS 85
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 121 (47.7 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 120 (47.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ FS+YG+ SVK+ P GK G GFV F E+A +A+ +
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 251 MNGKDINGKMVF 262
Score = 34 (17.0 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 121 (47.7 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE+L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 251 MNGKEISGKVIF 262
Score = 99 (39.9 bits), Expect = 0.00071, P = 0.00071
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 34 (17.0 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 121 (47.7 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 118 (46.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 251 MNGKEISGKVIF 262
Score = 99 (39.9 bits), Expect = 0.00071, P = 0.00071
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 34 (17.0 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 121 (47.7 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 113 (44.8 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GK F
Sbjct: 251 MNGKEMSGKSIF 262
Score = 34 (17.0 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 121 (47.7 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 114 TVIGKQ 119
++G +
Sbjct: 357 RIVGSK 362
Score = 114 (45.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ ++ D+ L++ F +YG+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 111 LNGTVI-GKQSF 121
+NGT + GK F
Sbjct: 252 MNGTELNGKTVF 263
Score = 34 (17.0 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 158 KMNGMLLNDRKVFVGRFKSRK 178
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 121 (47.7 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 116 (45.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 251 MNGKEISGKIIF 262
Score = 99 (39.9 bits), Expect = 0.00073, P = 0.00073
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 34 (17.0 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 121 (47.7 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE+L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 251 MNGKEITGKVIF 262
Score = 99 (39.9 bits), Expect = 0.00073, P = 0.00073
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 34 (17.0 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 121 (47.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQ 119
++G +
Sbjct: 356 RIVGSK 361
Score = 113 (44.8 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GK F
Sbjct: 251 MNGKEMSGKSIF 262
Score = 34 (17.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEA 107
S +++ LD +V DE L++ FS+YG + S K+ P G +G GFV ++N E A A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 108 LHKLNGTVIGKQ 119
L ++NG +IG++
Sbjct: 389 LSEMNGKMIGRK 400
Score = 120 (47.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEA 107
S IF+ LD ++ ++ L + FS +G I S K+ + KG GFVQF E+A+ A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 108 LHKLNGTVIG-KQSF 121
+ KLNG ++ KQ F
Sbjct: 193 IDKLNGMLMNDKQVF 207
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 112 (44.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++ DE LR+ F+ YG I S K+ +G GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 42 (19.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+TEMNG + R + +G A R
Sbjct: 248 VTEMNGKELNGRVLYVGRAQKR 269
>UNIPROTKB|E1BV45 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:AADN02049470
IPI:IPI00602926 ProteinModelPortal:E1BV45
Ensembl:ENSGALT00000015109 OMA:LNPPKCT Uniprot:E1BV45
Length = 243
Score = 108 (43.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + VG L NVT + + + FS YG+I + +PV KG +V+F N ++AE+AL
Sbjct: 161 TKVHVGRLTRNVTKDHIMEIFSTYGKIKMIDMPVDRLNPHLSKGYAYVEFENPDDAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSSSTGSSSGSSSSSASSRSGSSSTS 112
>UNIPROTKB|B0QYY7 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z95114 EMBL:AL049748
HOVERGEN:HBG000044 EMBL:AL079295 HGNC:HGNC:9906 ChiTaRS:RBFOX2
HOGENOM:HOG000230971 EMBL:Z82217 IPI:IPI00878853 SMR:B0QYY7
STRING:B0QYY7 Ensembl:ENST00000408983 Uniprot:B0QYY7
Length = 200
Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 114 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 173
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 174 GFGFVTFENSADADRAREKLHGTVV 198
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 121 (47.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 395
Query: 114 TVIGKQ 119
++G +
Sbjct: 396 RIVGSK 401
Score = 118 (46.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 290
Query: 111 LNGTVI-GKQSF 121
+NG I GK F
Sbjct: 291 MNGKEISGKVIF 302
Score = 99 (39.9 bits), Expect = 0.00081, P = 0.00081
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 200
Query: 114 TVI 116
++
Sbjct: 201 MLL 203
Score = 34 (17.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 197 KMNGMLLNDRKVFVGRFKSRK 217
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 113 (44.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + D+ LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+TEMNG + R + +G A R
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKR 269
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
IF+ LD ++ + L FS +G I S K+ V KG GFVQ+AN E+A++A+ KLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 113 GTVIG-KQSF 121
G ++ KQ +
Sbjct: 186 GMLLNDKQVY 195
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEA 107
SSN ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA
Sbjct: 317 SSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEA 374
Query: 108 LHKLNGTVI 116
+ +L+G +I
Sbjct: 375 MSQLSGKMI 383
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG----KGCGFVQFANRENAEEALHK 110
T ++V L + TD+DL+ F +YG+I S V + G KG GFV F N ++A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 111 LNG 113
LNG
Sbjct: 275 LNG 277
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 38 ASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---VGK-- 91
A AP G + NT+++VG LD NVTD L F Q G + +V++ V +
Sbjct: 17 AVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRS 76
Query: 92 -GCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
G G+V F N ++A A+ +LN + + R Y ++
Sbjct: 77 LGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 126 (49.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
IFVGGL P VTD DL + FS++G+I +I + +G GF+ FA+R +E++ ++
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 112 NGTVIG 117
+G G
Sbjct: 69 HGRDFG 74
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 43 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQ 97
P GP+ G IFVGG+D + DLR+ FSQYG + VKI V KG GF+
Sbjct: 21 PTSGPRY-GTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFIT 79
Query: 98 FANRENAEEALH---KLN 112
F +E+A++ L KLN
Sbjct: 80 FETQEDAQKILQEAEKLN 97
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 122 (48.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEE 106
S +F+GGL + T++ L + FS+YG IA V + +G GFV F N E+A++
Sbjct: 20 SDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKD 79
Query: 107 ALHKLNGTVIGKQSFRAD 124
A+ +NG + + R D
Sbjct: 80 AMAAMNGKQVDGRMIRVD 97
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 43 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQ 97
P GP+ G IFVGG+D + DLR+ FSQYG + VKI V KG GF+
Sbjct: 33 PTSGPRY-GTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFIT 91
Query: 98 FANRENAEEALH---KLN 112
F +E+A++ L KLN
Sbjct: 92 FETQEDAQKILQEAEKLN 109
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 121 (47.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 199
Query: 114 TVIGKQSFRADYG 126
++G + G
Sbjct: 200 RIVGSKPLHVTLG 212
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +FV + ++ DE L++ F +YG SVK+ GK G GFV++ E A++A+
Sbjct: 35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 94
Query: 111 LNGTVI-GK 118
L+G I GK
Sbjct: 95 LHGKSIDGK 103
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/99 (32%), Positives = 54/99 (54%)
Query: 46 GPQSEGDSS---NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CGF--V 96
G Q E D + +TT+++G + T+E L + FS+ GEI + + + K CGF V
Sbjct: 21 GTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 97 QFANRENAEEALHKLNGTVIGKQSFRADY------GNQW 129
F +RE+ E+A+ ++GT++ + R D+ G QW
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQW 119
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 127 (49.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQ 97
G P D T+F+G L N + + + F+++GE+ SV+IP KG G+VQ
Sbjct: 259 GDTPSEPSD----TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQ 314
Query: 98 FANRENAEEALHKLNGTVIGKQSFRADYGN 127
F+N E+A++AL L G I + R D+ +
Sbjct: 315 FSNMEDAKKALDALQGEYIDNRPVRLDFSS 344
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 129 (50.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 45 QGPQSEGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQF 98
QG G+ ++V LD VTDE LR+ F+++G I S K+ P G KG GFV F
Sbjct: 316 QGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAF 375
Query: 99 ANRENAEEALHKLNGTVIG 117
+ A L+++NG ++G
Sbjct: 376 SAASEASRVLNEMNGKMVG 394
Score = 116 (45.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/100 (29%), Positives = 52/100 (52%)
Query: 39 SNGAPGQGPQSEGDSSN----TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------P 88
++ PG G GD +++VG LD NVTD L F++ ++ SV++
Sbjct: 25 ASATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATN 84
Query: 89 VGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
G G+V ++N ++AE+A+ KLN + + + R Y ++
Sbjct: 85 TSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSR 124
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
+FV LD +V ++ L + FS G I S K+ +G GFVQF ++A+ A+ KLN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 113 GTVIG-KQSF 121
G V+ KQ F
Sbjct: 196 GKVLNDKQIF 205
Score = 108 (43.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 48 QSEGDSSN-TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVGKG---C-GFVQFANR 101
+S D T ++V L TD++L+ F QYG I+S V + G G C GFV F N
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENP 275
Query: 102 ENAEEALHKLNG 113
E+A A+ LNG
Sbjct: 276 EDAARAVEALNG 287
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 123 (48.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 35/122 (28%), Positives = 53/122 (43%)
Query: 11 SRPMRIGAATPRKXXXXXXXXXXXXXXASN-GAPGQGPQSEGDSSNTTIFVGGLDPNVTD 69
SR R +A+P S + QG NT + V GL T+
Sbjct: 89 SRRRRSRSASPNSNRRKHAGSRSSYSHDSKKDSHNQGDARANPDPNTCLGVFGLSLYTTE 148
Query: 70 EDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123
DLR+ FS+YG +A V + +G FV F + ++A+EA+ + NG + + R
Sbjct: 149 RDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRIRV 208
Query: 124 DY 125
DY
Sbjct: 209 DY 210
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A++++NG
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNG 363
Query: 114 TVIGKQSFRADYG 126
V+G ++ G
Sbjct: 364 RVVGSKTLHVTLG 376
Score = 105 (42.0 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +FV ++ DE L++ FS+YG SVK+ GK G GFV++ E A++A+ +
Sbjct: 199 TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLE 258
Query: 111 LNGTVI-GK 118
L+G I GK
Sbjct: 259 LHGKSIDGK 267
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 121 (47.7 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 82
Query: 114 TVIGKQ 119
++G +
Sbjct: 83 RIVGSK 88
>UNIPROTKB|I3LPZ9 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:FP325217
EMBL:FP325269 Ensembl:ENSSSCT00000030551 Uniprot:I3LPZ9
Length = 1132
Score = 109 (43.4 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 41 GAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
G P P++ S TT++VG LD T +D+ ++G I S+ + +GC ++ +
Sbjct: 501 GLPQIKPETASVCS-TTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVH 559
Query: 101 RENAEEALHKLN 112
R++A AL KL+
Sbjct: 560 RQDAYRALQKLS 571
Score = 34 (17.0 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 9/31 (29%), Positives = 9/31 (29%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQ 48
AA P A G PG G Q
Sbjct: 306 AAVPAAAAAAAAATAASPPQAPFGFPGDGMQ 336
Score = 33 (16.7 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 145 AIPPPNDP 152
+IPPP+ P
Sbjct: 759 SIPPPHTP 766
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 126 (49.4 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 36/127 (28%), Positives = 59/127 (46%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQ-SEGDSSNTTIF 59
+ +MNG Y +++P+++ T ++ N P + D +NT I+
Sbjct: 172 LIDMNGFYINNKPIKVNNPTHKRL---------------NSQTSTIPDLTSTDPNNTAIY 216
Query: 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ 119
V LD + + L+ F YGEI+ +K+ K FV F NRE+AE A LN +G
Sbjct: 217 VSQLDHYIDEGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNRESAEAAFG-LNNFPVGNT 275
Query: 120 SFRADYG 126
+ +G
Sbjct: 276 RLKVQWG 282
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 104 (41.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL+P T+E +R+ F ++GEI ++++P+ +G F+ F + ++ L K
Sbjct: 86 IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKK 145
Query: 112 NGTVIGKQ 119
V G +
Sbjct: 146 FHNVSGSK 153
Score = 35 (17.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 119 QSFRADYGNQWS 130
Q++ YGN W+
Sbjct: 193 QNWNQGYGNYWN 204
>UNIPROTKB|I3L1D4 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
Ensembl:ENST00000570626 Bgee:I3L1D4 Uniprot:I3L1D4
Length = 189
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 100 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 159
Query: 93 CGFVQFANRENAEEALHKLNGTVI 116
GFV F N +A+ A KL+GTV+
Sbjct: 160 FGFVTFENSADADRAREKLHGTVV 183
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 38 ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GK 91
A + P + PQ+E +T +FV GL T E LR F+Q+GE+A K+ K
Sbjct: 42 AESQTPAR-PQAE---PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSK 97
Query: 92 GCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125
G GFV++A E++ + + ++G + A+Y
Sbjct: 98 GFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEE 106
S +F+GGL + T++ L FS+YG I +V + + G GFV F N ++A++
Sbjct: 2 SDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKD 61
Query: 107 ALHKLNGTVIGKQSFRAD 124
AL +NG + ++ R D
Sbjct: 62 ALEGMNGKSVDGRTIRVD 79
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 113 (44.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + D+ LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ D+ LR+ FS +G SVK+ + +G GFV + N E A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 111 LNG 113
+NG
Sbjct: 251 MNG 253
Score = 37 (18.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
++EMNG + R + +G A R
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKR 269
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 125 (49.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 31/101 (30%), Positives = 48/101 (47%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VG L +T+ +LR F Q+GEI S+ + + C FVQ+ R AE A +
Sbjct: 228 DRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERT 287
Query: 111 LNGTVIGKQSFRADYGNQWSXXXXXXXXXXXXXXA-IPPPN 150
N VI + + + + A IPPP+
Sbjct: 288 FNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFDLAGIPPPS 328
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
GFV F E+ ++ + HKLNG VI + +A
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 174
>ZFIN|ZDB-GENE-041008-192 [details] [associations]
symbol:rbm15 "RNA binding motif protein 15"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041008-192 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
OMA:DYLVMIV EMBL:BX324132 IPI:IPI00902274
Ensembl:ENSDART00000111617 Bgee:F1RCY7 Uniprot:F1RCY7
Length = 855
Score = 129 (50.5 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 50 EGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PV-GKGC--GFVQFANREN 103
E D +N T+F+G LD VT+ DLR+ F ++G I V I P G+ GF++F N +
Sbjct: 302 EDDQRANRTLFLGNLDITVTENDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLDM 361
Query: 104 AEEALHKLNGTVIGKQSFRADYG 126
A A ++G V+G+ + YG
Sbjct: 362 AHRAKISMSGKVVGRNPIKIGYG 384
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 122 (48.0 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/104 (34%), Positives = 57/104 (54%)
Query: 38 ASNGAPGQGPQSEG---DSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI 87
AS G G +SEG D+S +F+GGL + T +DL+ FS++GE+ ++K+
Sbjct: 19 ASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 78
Query: 88 -PV---GKGCGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
P+ +G GFV F E+ ++ + HKLNG VI + +A
Sbjct: 79 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 122
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 120 (47.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ S N T++ GG+ +TD+ +RQ FS +G+I +++ K FV+F+ +A A+
Sbjct: 76 NQSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKRYSFVRFSTHGSAAHAI 135
Query: 109 HKLNGTVIGKQSFRADYGNQ 128
+ GT I + + +G +
Sbjct: 136 VSVTGTTIEGRVVKCYWGKE 155
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 122 (48.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
I++G L V+++D+ F YG+I V + G GFV+F ++ +AE+A+H LNG +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK--NGFGFVEFDDKRDAEDAVHDLNGKELG 62
Query: 118 KQSFRADY 125
+ DY
Sbjct: 63 GERVILDY 70
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 122 (48.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
I++G L V+++D+ F YG+I V + G GFV+F ++ +AE+A+H LNG +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK--NGFGFVEFDDKRDAEDAVHDLNGKELG 62
Query: 118 KQSFRADY 125
+ DY
Sbjct: 63 GERVILDY 70
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 116 (45.9 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 99 (39.9 bits), Expect = 0.00071, P = 0.00071
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ D LR+ FS++G+ SVK+ + KG GFV F E A++A+
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 111 LNGTVI 116
+NG I
Sbjct: 251 MNGKEI 256
Score = 33 (16.7 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ +MNG + R + +G A R
Sbjct: 248 VADMNGKEINGRMVYVGRAQKR 269
>UNIPROTKB|H3BMM9 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000561518
Bgee:H3BMM9 Uniprot:H3BMM9
Length = 284
Score = 106 (42.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 116 (45.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIGKQS 120
V A+R AE A N + G+++
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKA 104
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 121 (47.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 50 EGDSS-NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRE 102
E D + + IFVGGL +VT+ L F +YG+I +I VG+ G GF+ F +R
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 103 NAEEALHKLNGTVIGKQ 119
A++A+ ++G +G +
Sbjct: 65 GADDAIKHMHGRELGNK 81
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ V GKG G + F++ E A +A+ ++NG
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNG 363
Query: 114 TVIGKQSFRADYG 126
++G + + G
Sbjct: 364 RIVGSKPLQVTLG 376
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 120 (47.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 109
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 106
Query: 110 KLN 112
KLN
Sbjct: 107 KLN 109
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRAD 124
A+ +NG + + R D
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEE 106
S ++T+FV G+ + T+E L Q FSQYG++ V + + K G +V F+++E AE+
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 107 ALHKLNGTVI 116
AL +LN ++
Sbjct: 78 ALLELNAQLV 87
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 113 (44.8 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 291
Query: 114 TVI 116
++
Sbjct: 292 RIV 294
Score = 108 (43.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 96
Query: 114 TVI 116
++
Sbjct: 97 MLL 99
Score = 104 (41.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 187 MNGKELNGKQIY 198
Score = 34 (17.0 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 93 KMNGMLLNDRKVFVGRFKSRK 113
>UNIPROTKB|H3BTC0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000565870
Bgee:H3BTC0 Uniprot:H3BTC0
Length = 302
Score = 106 (42.4 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 116 (45.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|A6QR16 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9913 "Bos taurus" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:BC150075
IPI:IPI00867269 RefSeq:NP_001095311.1 UniGene:Bt.20502
ProteinModelPortal:A6QR16 STRING:A6QR16 Ensembl:ENSBTAT00000013151
GeneID:504506 KEGG:bta:504506 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 InParanoid:A6QR16 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM NextBio:20866696 Uniprot:A6QR16
Length = 305
Score = 106 (42.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>UNIPROTKB|F6XEW2 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 CTD:10921 KO:K14325 OMA:TKRKDRT
Ensembl:ENSCAFT00000030839 EMBL:AAEX03004619 RefSeq:XP_537005.1
ProteinModelPortal:F6XEW2 GeneID:479880 KEGG:cfa:479880
Uniprot:F6XEW2
Length = 305
Score = 106 (42.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>UNIPROTKB|Q15287 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP;IDA;TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471112
TCDB:3.A.18.1.1 GO:GO:0003730 GO:GO:0006406 GO:GO:0000398
Reactome:REACT_1788 EMBL:AC009065 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 CTD:10921 eggNOG:NOG331533 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM EMBL:L37368 EMBL:AF015608 EMBL:AF274003
EMBL:AK289955 EMBL:AK293343 EMBL:AK303100 EMBL:AK316132
EMBL:BC001659 EMBL:BC001838 EMBL:BC108316 EMBL:AF247662
IPI:IPI00033561 IPI:IPI00479871 IPI:IPI00783594 PIR:JC4525
RefSeq:NP_006702.1 RefSeq:NP_542161.1 UniGene:Hs.355643
UniGene:Hs.507343 UniGene:Hs.733012 PDB:4A8X PDBsum:4A8X
ProteinModelPortal:Q15287 SMR:Q15287 DIP:DIP-32943N IntAct:Q15287
MINT:MINT-1474621 STRING:Q15287 PhosphoSite:Q15287 DMDM:74754492
PaxDb:Q15287 PRIDE:Q15287 DNASU:10921 Ensembl:ENST00000301730
Ensembl:ENST00000320225 Ensembl:ENST00000397086
Ensembl:ENST00000565678 Ensembl:ENST00000566458
Ensembl:ENST00000568631 GeneID:10921 KEGG:hsa:10921 UCSC:uc002cpt.3
UCSC:uc002cpx.3 GeneCards:GC16M002303 H-InvDB:HIX0031789
HGNC:HGNC:10080 HPA:HPA044014 MIM:606447 neXtProt:NX_Q15287
PharmGKB:PA34453 HOVERGEN:HBG053138 InParanoid:Q15287 ChiTaRS:RNPS1
GenomeRNAi:10921 NextBio:41487 ArrayExpress:Q15287 Bgee:Q15287
CleanEx:HS_RNPS1 Genevestigator:Q15287 GermOnline:ENSG00000205937
Uniprot:Q15287
Length = 305
Score = 106 (42.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>MGI|MGI:97960 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:97960 GO:GO:0005737
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OMA:TKRKDRT OrthoDB:EOG44J2KM
HOVERGEN:HBG053138 ChiTaRS:RNPS1 EMBL:AK146443 EMBL:AK151150
EMBL:AK165905 EMBL:BC002061 EMBL:BC008089 IPI:IPI00462424
IPI:IPI00656166 RefSeq:NP_001073596.1 RefSeq:NP_001073597.1
RefSeq:NP_033096.2 UniGene:Mm.1951 ProteinModelPortal:Q99M28
SMR:Q99M28 STRING:Q99M28 PhosphoSite:Q99M28 PaxDb:Q99M28
PRIDE:Q99M28 Ensembl:ENSMUST00000088512 Ensembl:ENSMUST00000115371
Ensembl:ENSMUST00000163717 GeneID:19826 KEGG:mmu:19826
UCSC:uc008avs.1 UCSC:uc008avu.1 NextBio:297301 Bgee:Q99M28
CleanEx:MM_RNPS1 Genevestigator:Q99M28
GermOnline:ENSMUSG00000034681 Uniprot:Q99M28
Length = 305
Score = 106 (42.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>RGD|1307522 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 106 (42.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>UNIPROTKB|Q6AYK1 [details] [associations]
symbol:Rnps1 "RNA-binding protein with serine-rich domain
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 106 (42.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 220
Query: 109 HKLNGTVIGKQSFRA 123
++G I Q A
Sbjct: 221 KHMDGGQIDGQEITA 235
Score = 33 (16.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 120 (47.3 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 109
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94
Query: 110 KLN 112
KLN
Sbjct: 95 KLN 97
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 113 (44.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 310
Query: 114 TVI 116
++
Sbjct: 311 RIV 313
Score = 108 (43.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 115
Query: 114 TVI 116
++
Sbjct: 116 MLL 118
Score = 102 (41.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 205
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 206 MNGKELNGKQIY 217
Score = 34 (17.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 112 KMNGMLLNDRKVFVGRFKSRK 132
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 119 (46.9 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 13 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 72
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
GFV F E+ ++ + HKLNG VI + +A
Sbjct: 73 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 107
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 113 (44.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 323
Query: 114 TVI 116
++
Sbjct: 324 RIV 326
Score = 102 (41.0 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 219 MNGKELNGKQIY 230
Score = 34 (17.0 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 125 KMNGMLLNDRKVFVGRFKSRK 145
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 120 (47.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 109
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 106
Query: 110 KLN 112
KLN
Sbjct: 107 KLN 109
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 120 (47.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 109
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 106
Query: 110 KLN 112
KLN
Sbjct: 107 KLN 109
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 102 (41.0 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 58 IFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 110
IFVGGL+P + T+E +R+ F ++GEI ++++P+ +G F+ F E ++ L K
Sbjct: 155 IFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 111 LNGTVIGKQ 119
TV G +
Sbjct: 215 KFHTVSGSK 223
Score = 101 (40.6 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 40 NGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKG 92
NGA G Q S+ + +FVGGL + + +DL+ F+++GE+ I + +G
Sbjct: 52 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 111
Query: 93 CGFVQFANRENAEEAL----HKLNGTVI 116
GF+ F + + E+ L H+L+G VI
Sbjct: 112 FGFILFKDAASVEKVLDQKEHRLDGRVI 139
Score = 38 (18.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 119 QSFRADYGNQWS 130
QS+ YGN W+
Sbjct: 266 QSWNQGYGNYWN 277
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 115 (45.5 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKG 92
S G G + + T++ + L T DLR+ F +YG+I V IP KG
Sbjct: 2 SRGGGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFR 122
GFV+F R +AE AL + +G ++ + R
Sbjct: 62 FGFVRFYERRDAEHALDRTDGKLVDGRELR 91
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 115 (45.5 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKG 92
S G G + + T++ + L T DLR+ F +YG+I V IP KG
Sbjct: 2 SRGGGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFR 122
GFV+F R +AE AL + +G ++ + R
Sbjct: 62 FGFVRFYERRDAEHALDRTDGKLVDGRELR 91
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 124 (48.7 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---VGK--GCGFVQFANRENAE 105
G+ +T ++V L VTD+ L FSQYG ++SV + +G+ G GFV F N ENA+
Sbjct: 197 GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAK 256
Query: 106 EALHKLNGTVIGKQ 119
+A+ L G +G +
Sbjct: 257 KAMESLCGLQLGSK 270
Score = 101 (40.6 bits), Expect = 0.00018, P = 0.00018
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++T L + F +G I S K+ KG GFVQF ++A A L+G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 114 TVI-GKQSFRADYGNQ 128
+++ GK+ F A + N+
Sbjct: 174 SMVYGKKLFVAKFINK 189
>TAIR|locus:2179295 [details] [associations]
symbol:RRC1 "reduced red-light responses in cry1cry2
background 1" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010413
"glucuronoxylan metabolic process" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0045492
"xylan biosynthetic process" evidence=RCA] [GO:0050665 "hydrogen
peroxide biosynthetic process" evidence=RCA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
PROSITE:PS50800 SMART:SM00360 SMART:SM00648 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 EMBL:AF360212 EMBL:AY040060 IPI:IPI00527464
RefSeq:NP_568464.1 UniGene:At.23362 PDB:2E62 PDBsum:2E62
ProteinModelPortal:Q9C5J3 SMR:Q9C5J3 IntAct:Q9C5J3 PRIDE:Q9C5J3
EnsemblPlants:AT5G25060.1 GeneID:832577 KEGG:ath:AT5G25060
TAIR:At5g25060 HOGENOM:HOG000030509 InParanoid:Q9C5J3 OMA:EPYIMIT
PhylomeDB:Q9C5J3 ProtClustDB:CLSN2689864 EvolutionaryTrace:Q9C5J3
ArrayExpress:Q9C5J3 Genevestigator:Q9C5J3 Uniprot:Q9C5J3
Length = 946
Score = 127 (49.8 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG------- 90
+G PG +GD T ++VG L P V + L + F ++G IASVKI P
Sbjct: 165 SGRPGSF--DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQ 222
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
+ CGFV F NR + + A ++ G ++ + + +G
Sbjct: 223 RNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWG 258
>UNIPROTKB|H0YKS1 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC066612 EMBL:AC090526 HGNC:HGNC:17940
Ensembl:ENST00000560172 Uniprot:H0YKS1
Length = 126
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI--ASVKIPVGK--GCGF 95
+G G G + S IFV L ++T + L++ FSQ G + A +K+ GK GCG
Sbjct: 33 SGPMGSGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGT 92
Query: 96 VQFANRENAEEALHKLNGTVI-GKQ 119
V+F + E+AE+A +NG I G++
Sbjct: 93 VRFDSPESAEKACRIMNGIKISGRE 117
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|I3LKW5 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090316 "positive regulation of intracellular protein
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0036002 "pre-mRNA binding" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005487 "nucleocytoplasmic transporter activity" evidence=IEA]
[GO:0000060 "protein import into nucleus, translocation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 GeneTree:ENSGT00390000002792
Ensembl:ENSSSCT00000022932 Uniprot:I3LKW5
Length = 402
Score = 122 (48.0 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL + +++L F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 210 DKTITTLYVGGLGRDGVEKNLPNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 269
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 270 FNKLIVNGRRLNVKWG 285
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 116 (45.9 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQWS 130
A+ +NG + + R D + S
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 113 (44.8 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IFV LD ++ ++ L S +G I S + KG GFV F E AE A+ K+NG
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 114 TVI-GKQSF 121
++ G++ F
Sbjct: 161 MLLNGRKVF 169
Score = 97 (39.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
+++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ ++N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 113 GTVI-GKQSF 121
G + GKQ +
Sbjct: 253 GKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNGRKVFVGQFKSRK 177
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 114 (45.2 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 103 NAEEALHKLNG 113
AEEA+ LNG
Sbjct: 178 EAEEAIKGLNG 188
Score = 108 (43.1 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 105
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 106 EALHKLNGTVIGKQSFRADY 125
+A++ LNG + ++ + Y
Sbjct: 95 KAINTLNGLRLQTKTIKVSY 114
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 113 (44.8 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 34 (17.0 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 113 (44.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 104 (41.7 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 113 (44.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 104 (41.7 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 113 (44.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 102 (41.0 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 113 (44.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 102 (41.0 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 113 (44.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 102 (41.0 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 113 (44.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 102 (41.0 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 113 (44.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 102 (41.0 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|B0QYV1 [details] [associations]
symbol:RBM9 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044 InterPro:IPR025670
Pfam:PF12414 EMBL:AL079295 IPI:IPI00843981 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
SMR:B0QYV1 STRING:B0QYV1 Ensembl:ENST00000397303 Uniprot:B0QYV1
Length = 357
Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 72 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 131
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 132 GFGFVTFENSADADRAREKLHGTVV 156
>UNIPROTKB|Q95ZE9 [details] [associations]
symbol:Nelf-E "Negative elongation factor E" species:7244
"Drosophila virilis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0007070 "negative regulation of transcription from RNA
polymerase II promoter during mitosis" evidence=ISS] [GO:0017053
"transcriptional repressor complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0017053 GO:GO:0005694 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0007070
eggNOG:NOG86140 OrthoDB:EOG4KD535 EMBL:AJ306692
ProteinModelPortal:Q95ZE9 STRING:Q95ZE9 FlyBase:FBgn0044888
InParanoid:Q95ZE9 Uniprot:Q95ZE9
Length = 281
Score = 119 (46.9 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
Q E + TIFV G VT+E L++ F+ YG I +V + + K GFV FA E+A+ A
Sbjct: 159 QPEKPRAGNTIFVSG--NKVTEEFLKKTFNDYGTIVNVSMEIEKSRGFVSFAKPESADRA 216
Query: 108 LHKLNG-TVIG 117
+ +++G +V G
Sbjct: 217 IAEMHGKSVTG 227
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 125 (49.1 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEE 106
P E ++ +++G ++ NV+ E L+Q F Q+G + +++I G+GC FV F E+A
Sbjct: 268 PHQE-ETPTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRILHGRGCAFVNFFTVESAAA 326
Query: 107 ALHKLNGTVI 116
A + LNGT++
Sbjct: 327 ARNGLNGTMV 336
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 103
G G Q E ++ G ++P T+E++R FSQ+G + ++KI K C F+ FA+
Sbjct: 168 GAGGQLE---PTKIVWAGNINPESTEEEVRHLFSQFGYLQAIKIIPNKQCAFITFADVNC 224
Query: 104 AEEALHKLNGTVIGKQSFRADYG 126
A +A LNGT+ + +G
Sbjct: 225 AIQAQFNLNGTIFRGLPLKLGFG 247
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 117 (46.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 102 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 161
Query: 93 CGFVQFANRENAEEALHKLNGTVI 116
GFV F N +A+ A KL+GTV+
Sbjct: 162 FGFVTFENSADADRAREKLHGTVV 185
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 113 (44.8 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 108 (43.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 102 (41.0 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKELNGKQIY 262
Score = 34 (17.0 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 71 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 130
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 131 GFGFVTFENSADADRAREKLHGTVV 155
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 121 (47.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 91 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVV 175
>UNIPROTKB|F1M2V8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00778339
Ensembl:ENSRNOT00000006398 ArrayExpress:F1M2V8 Uniprot:F1M2V8
Length = 377
Score = 121 (47.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 91 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVV 175
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 122 (48.0 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANR 101
QS D S ++FVG + T+E L++ FS+ G + S+K+ KG GF ++ ++
Sbjct: 8 QSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQ 67
Query: 102 ENAEEALHKLNGTVIGKQSFRAD 124
E A A+ LNG IG ++ R D
Sbjct: 68 ETALSAMRNLNGYEIGGRTLRVD 90
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 91 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVV 175
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 119 (46.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 109
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A+ L
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQRILQEAE 106
Query: 110 KLN 112
KLN
Sbjct: 107 KLN 109
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 120 (47.3 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 109
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94
Query: 110 KLN 112
KLN
Sbjct: 95 KLN 97
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363
Query: 114 TVIGKQSFRADYG 126
++G + G
Sbjct: 364 RIVGSKPLHVTLG 376
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +FV + ++ DE L++ F +YG SVK+ GK G GFV++ E A++A+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 111 LNGTVI-GK 118
L+G I GK
Sbjct: 259 LHGKSIDGK 267
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ V GKG G V F++ E+A +A+ ++NG
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNG 363
Query: 114 TVIGKQSFRADYG 126
+G + G
Sbjct: 364 RTVGSKPLHVTLG 376
>UNIPROTKB|C9IZL7 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590762 HGNC:HGNC:7871 HOGENOM:HOG000231095
IPI:IPI00645966 ProteinModelPortal:C9IZL7 SMR:C9IZL7 STRING:C9IZL7
PRIDE:C9IZL7 Ensembl:ENST00000454976 ArrayExpress:C9IZL7
Bgee:C9IZL7 Uniprot:C9IZL7
Length = 207
Score = 115 (45.5 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEE 106
P + + + +FVG L P++T+E++R+ F +YG+ V I KG GF++ R AE
Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEI 124
Query: 107 ALHKLNGTVI-GKQ 119
A +L+ + GKQ
Sbjct: 125 AKVELDNMPLRGKQ 138
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 121 (47.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 101 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 160
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 161 GFGFVTFENSADADRAREKLHGTVV 185
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 121 (47.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 101 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 160
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 161 GFGFVTFENSADADRAREKLHGTVV 185
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 121 (47.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 107 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 166
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 167 GFGFVTFENSADADRAREKLHGTVV 191
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 121 (47.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 109 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 168
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 169 GFGFVTFENSADADRAREKLHGTVV 193
>UNIPROTKB|F1N2A9 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 InterPro:IPR025670
Pfam:PF12414 IPI:IPI00685735 OMA:HGEQSTN EMBL:DAAA02013800
Ensembl:ENSBTAT00000026808 Uniprot:F1N2A9
Length = 398
Score = 121 (47.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 109 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 168
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 169 GFGFVTFENSADADRAREKLHGTVV 193
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 119 (46.9 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
GFV F E+ ++ + HKLNG VI + +A
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 174
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVG L P+ DE L++ FS+Y ++ V +P+ KG GFV F E+ A ++
Sbjct: 58 LFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEM 117
Query: 112 NGTVIGK 118
NG IG+
Sbjct: 118 NGKYIGQ 124
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ 119
H L+ + G+Q
Sbjct: 69 HNLDRKWICGRQ 80
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ 119
H L+ + G+Q
Sbjct: 69 HNLDRKWICGRQ 80
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ 119
H L+ + G+Q
Sbjct: 69 HNLDRKWICGRQ 80
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVG L P+ DE L++ FS+Y ++ V +P+ KG GFV F E+ A ++
Sbjct: 58 LFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEM 117
Query: 112 NGTVIGK 118
NG IG+
Sbjct: 118 NGKYIGQ 124
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ 119
H L+ + G+Q
Sbjct: 69 HNLDRKWICGRQ 80
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 119 (46.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 38 ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GK 91
AS G ++G+ IFVGG+ P V +EDL F+QYGE+A ++ +
Sbjct: 12 ASETIKENGHSTKGNEDKK-IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSR 70
Query: 92 GCGFVQFANRENAEEALHKLNGTVIGK 118
G FV+F E + AL T+ GK
Sbjct: 71 GFAFVEFTTGEGCKLALAAREQTIKGK 97
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 121 (47.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 51 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 110
Query: 114 TVIGKQ 119
++G +
Sbjct: 111 RIVGSK 116
>RGD|1311838 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C. elegans)
2" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0010724 "regulation of definitive erythrocyte differentiation"
evidence=IEA;ISO] [GO:0021942 "radial glia guided migration of
Purkinje cell" evidence=ISO] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048813 "dendrite morphogenesis" evidence=ISO] [GO:0050885
"neuromuscular process controlling balance" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 RGD:1311838
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
CTD:23543 EMBL:BC128766 IPI:IPI00950010 RefSeq:NP_001073364.1
UniGene:Rn.137551 ProteinModelPortal:A1A5R1 SMR:A1A5R1
Ensembl:ENSRNOT00000066431 GeneID:362950 KEGG:rno:362950
UCSC:RGD:1311838 InParanoid:A1A5R1 NextBio:681892
ArrayExpress:A1A5R1 Genevestigator:A1A5R1 Uniprot:A1A5R1
Length = 432
Score = 121 (47.7 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 143 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 202
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 203 GFGFVTFENSADADRAREKLHGTVV 227
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 110 (43.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---P-VGKG-C-GFVQFANRE 102
S S++ +++ L+P+VT+ +L++ F +G++ KI P G C GFV F+ R
Sbjct: 190 SSSQSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRR 249
Query: 103 NAEEALHKLNGTVIGKQS--FRADYGNQWS 130
A +A+ +NG I QS + NQ S
Sbjct: 250 EALKAVSSMNGANIPFQSTPIYVKFANQLS 279
Score = 34 (17.0 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 3 EMNGVYCSSRPMRIGAA 19
++NG S+P+++ A
Sbjct: 171 QLNGFEVDSKPLKVSYA 187
>UNIPROTKB|F1NCA4 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AADN02006252 EMBL:AADN02006253 IPI:IPI00583090
Ensembl:ENSGALT00000020480 Uniprot:F1NCA4
Length = 377
Score = 120 (47.3 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 92 TDGQQSQTQSSENTESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 151
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 152 GFGFVTFENSADADRAREKLHGTVV 176
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 117 (46.2 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 97 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 156
Query: 93 CGFVQFANRENAEEALHKLNGTVI 116
GFV F N +A+ A KL+GTV+
Sbjct: 157 FGFVTFENSADADRAREKLHGTVV 180
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 116 (45.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIGKQS 120
V A+R AE A N + G+++
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKA 104
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 116 (45.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIGKQS 120
V A+R AE A N + G+++
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKA 104
>UNIPROTKB|F8VZY7 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01022282 ProteinModelPortal:F8VZY7 SMR:F8VZY7
Ensembl:ENST00000551752 ArrayExpress:F8VZY7 Bgee:F8VZY7
Uniprot:F8VZY7
Length = 263
Score = 117 (46.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 93 CGFVQFANRENAEEALHKLNGTVI 116
GFV F N +A+ A KL+GTV+
Sbjct: 158 FGFVTFENSADADRAREKLHGTVV 181
>UNIPROTKB|H3BMS0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BMS0 SMR:H3BMS0 Ensembl:ENST00000567147
Bgee:H3BMS0 Uniprot:H3BMS0
Length = 257
Score = 101 (40.6 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEAL 108
T + +G L NVT + + + FS YG+I + +PV KG +V+F N + AE+AL
Sbjct: 138 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 197
Query: 109 HKLNG 113
++G
Sbjct: 198 KHMDG 202
Score = 33 (16.7 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTT 57
++T + +S+G+ S SS+T+
Sbjct: 50 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 89
>MGI|MGI:1933973 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C.
elegans) 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IGI;IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IDA] [GO:0021942 "radial glia guided migration of Purkinje
cell" evidence=IMP] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0050885 "neuromuscular process
controlling balance" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933973
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1
OrthoDB:EOG4NVZKS eggNOG:NOG293807 CTD:23543 OMA:HGEQSTN
ChiTaRS:RBFOX2 EMBL:AF387322 EMBL:AY659951 EMBL:AY659952
EMBL:AY659953 EMBL:AF229055 EMBL:AY904025 EMBL:DQ017388
EMBL:DQ017389 EMBL:AK044929 EMBL:AK077594 EMBL:BC002124
EMBL:BC027263 IPI:IPI00153656 IPI:IPI00223425 IPI:IPI00331207
IPI:IPI00606741 IPI:IPI00785326 IPI:IPI00877224 IPI:IPI00877264
IPI:IPI00877283 IPI:IPI00886410 RefSeq:NP_001104297.1
RefSeq:NP_001104298.1 RefSeq:NP_001104299.1 RefSeq:NP_001104300.1
RefSeq:NP_444334.3 RefSeq:NP_780596.1 UniGene:Mm.202774
ProteinModelPortal:Q8BP71 SMR:Q8BP71 STRING:Q8BP71
PhosphoSite:Q8BP71 PaxDb:Q8BP71 PRIDE:Q8BP71
Ensembl:ENSMUST00000048145 Ensembl:ENSMUST00000111581
Ensembl:ENSMUST00000166610 Ensembl:ENSMUST00000171751 GeneID:93686
KEGG:mmu:93686 UCSC:uc007wnc.2 UCSC:uc007wnd.2 UCSC:uc007wne.2
UCSC:uc007wnf.2 UCSC:uc007wng.2 UCSC:uc007wni.2 UCSC:uc011zvf.1
UCSC:uc011zvg.1 NextBio:351415 Bgee:Q8BP71 CleanEx:MM_RBM9
Genevestigator:Q8BP71 Uniprot:Q8BP71
Length = 449
Score = 121 (47.7 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 160 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 219
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 220 GFGFVTFENSADADRAREKLHGTVV 244
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL+ N ++ L FS +G I+ V + +G GF+ F N E+A +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQ 128
A+ +NG + + R D+ +
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGK 84
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +FVGGL+ N ++ L FS +G I+ V + +G GF+ F N E+A +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 107 ALHKLNGTVIGKQSFRADYGNQ 128
A+ +NG + + R D+ +
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGK 84
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 124 (48.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/131 (28%), Positives = 62/131 (47%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
+T MNG + SR +R AT + N QS SN T++V
Sbjct: 519 ITAMNGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYN-------QSS--PSNCTVYV 569
Query: 61 GGLDPNVT---DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
GG++ +T +E L++ F+ YG I +++ KG FV+F+ +E A A+ ++ T I
Sbjct: 570 GGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEIN 629
Query: 118 KQSFRADYGNQ 128
Q + +G +
Sbjct: 630 AQPVKCSWGKE 640
Score = 119 (46.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PV---GKGCGFVQFANRENAEEALHKL 111
IFVG L + + LR+ F+ +GEI+ ++ P KG GFV F + AE A+ +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 112 NGTVIGKQSFRADYGNQ 128
NG +G +S R ++ +
Sbjct: 523 NGQWLGSRSIRTNWATR 539
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 111 (44.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ F+ +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 104 (41.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GK--GCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F QYG SVK+ GK G GFV F E+A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 111 LNGTVI-GKQSF 121
+NG + GK F
Sbjct: 251 MNGKDLNGKAIF 262
Score = 34 (17.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 111 (44.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 114 TVI 116
++
Sbjct: 161 MLL 163
Score = 102 (41.0 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F +YG S+++ KG GFV F E+A+ A+ +
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDE 250
Query: 111 LNGTVI-GKQSF 121
+NG + GKQ +
Sbjct: 251 MNGKEMNGKQVY 262
Score = 34 (17.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
GFV F E+ ++ + HKLNG VI + +A
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 174
Score = 94 (38.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 110
IFVGGL P+ +E +R+ F +GE+ S+++P+ +G F+ F E ++ + K
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Score = 36 (17.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEG 51
AAT AS G G +SEG
Sbjct: 32 AATQGAAAAAGSGAGTGGGTASGGTEGGSAESEG 65
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
GFV F E+ ++ + HKLNG VI + +A
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 174
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSFRA 123
GFV F E+ ++ + HKLNG VI + +A
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 174
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 120 (47.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A G Q E SS+ IFVG L P VTD L FS Y + ++ G+ G
Sbjct: 124 NWAYASG-QREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGF 182
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+++A+ A+ ++ G +G + R ++ +
Sbjct: 183 GFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATK 217
>UNIPROTKB|D4A288 [details] [associations]
symbol:D4A288 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG469QV2
IPI:IPI00358787 ProteinModelPortal:D4A288
Ensembl:ENSRNOT00000039637 Uniprot:D4A288
Length = 291
Score = 117 (46.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/96 (34%), Positives = 48/96 (50%)
Query: 40 NGAPGQGPQSEGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------G 92
NGAP S D S T +++ GL P++TD+DL + YG+I S K + K G
Sbjct: 8 NGAPNSSRSSGNDQMSKTNLYIRGLQPSITDQDLVKLCQPYGKIVSTKAILDKTTNKCKG 67
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F + +A +A+ L + G Q+ A Q
Sbjct: 68 YGFVDFDSPSSAHKAVTALKAS--GMQAQMAKQQEQ 101
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIGKQS 120
V A+R AE A N + G+++
Sbjct: 80 VTMADRAAAERACKDPNPIIDGRKA 104
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/134 (29%), Positives = 64/134 (47%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSS--NTTI 58
+T MNG + SR +R AT RK N P + SS N T+
Sbjct: 154 ITAMNGQWLGSRSIRTNWAT-RKPPATKADM--------NAKPLTFDEVYNQSSPTNCTV 204
Query: 59 FVGGLDPNVT----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
+ GG++ ++ +E L++ FS YG I +++ KG FV+F+ +E A A+ +N T
Sbjct: 205 YCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNT 264
Query: 115 VIGKQSFRADYGNQ 128
I +Q + +G +
Sbjct: 265 EINQQPVKCAWGKE 278
Score = 114 (45.2 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PV---GKGCGFVQFANRENAEEALHKL 111
IFVG L + + L+ F+ +GEI+ ++ P KG GFV F + AE A+ +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 112 NGTVIGKQSFRADYGNQ 128
NG +G +S R ++ +
Sbjct: 158 NGQWLGSRSIRTNWATR 174
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKG 92
SN G ++ D NT + V GL T+ DLR+ FS+YG ++ V + +G
Sbjct: 2 SNRRRHTGSRANPDP-NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRG 60
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125
FV F ++++EA+ + NG + + R DY
Sbjct: 61 FAFVYFERIDDSKEAMERANGMELDGRRIRVDY 93
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKG 92
SN G ++ D NT + V GL T+ DLR+ FS+YG ++ V + +G
Sbjct: 2 SNRRRHTGSRANPDP-NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRG 60
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125
FV F ++++EA+ + NG + + R DY
Sbjct: 61 FAFVYFERIDDSKEAMERANGMELDGRRIRVDY 93
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 107 (42.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + D+ LR+ F YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVI 116
++
Sbjct: 356 RIV 358
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ D+ LR+ FS +G SVK+ + +G GFV + N E A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 111 LNG 113
+NG
Sbjct: 251 MNG 253
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
++EMNG + R + +G A R
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKR 269
>UNIPROTKB|C9JYS8 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075 EMBL:AL590762
HGNC:HGNC:7871 HOGENOM:HOG000231095 IPI:IPI00645010
ProteinModelPortal:C9JYS8 SMR:C9JYS8 STRING:C9JYS8 PRIDE:C9JYS8
Ensembl:ENST00000413858 ArrayExpress:C9JYS8 Bgee:C9JYS8
Uniprot:C9JYS8
Length = 248
Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEE 106
P + + + +FVG L P++T+E++R+ F +YG+ V I KG GF++ R AE
Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEI 124
Query: 107 ALHKLNGTVI-GKQ 119
A +L+ + GKQ
Sbjct: 125 AKVELDNMPLRGKQ 138
WARNING: HSPs involving 742 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.131 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 176 137 0.00091 102 3 11 23 0.37 32
30 0.45 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 992
No. of states in DFA: 575 (61 KB)
Total size of DFA: 138 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.18u 0.08s 12.26t Elapsed: 00:00:01
Total cpu time: 12.20u 0.08s 12.28t Elapsed: 00:00:01
Start: Sat May 11 02:37:09 2013 End: Sat May 11 02:37:10 2013
WARNINGS ISSUED: 2