BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030481
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 230 bits (586), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/189 (65%), Positives = 137/189 (72%), Gaps = 25/189 (13%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK++GYQQQ GGY +GA +SEGD+ NTTIFV
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----GGYMPSGA---FTRSEGDTINTTIFV 310
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPFS++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 311 GGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 121 FRA-------------DYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAYGAYPV 167
R YGNQW YYGGQ Y+GYGY +P P DP MY AA YP+
Sbjct: 371 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAP----YYPM 425
Query: 168 YGSHQQQVS 176
YG HQQQVS
Sbjct: 426 YGGHQQQVS 434
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 103 NAEEALHKLNGTVIGKQSFR 122
+A+ ++NG ++ R
Sbjct: 253 ERTKAMTEMNGVKCSSRAMR 272
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS--QYGEIASVKIPVGK------GCGF 95
G Q+ + N TI+VG L + + L F+ + EI S+K+ K G GF
Sbjct: 91 GNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGF 150
Query: 96 VQFANRENAEEALHKLNGTVI--GKQSFRADY 125
V+F + + A++ L + NG + Q FR ++
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNW 182
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 134/189 (70%), Gaps = 25/189 (13%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK++GYQQQ GGY NG + EGD NTTIFV
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----GGYMPNGTLTR---PEGDIMNTTIFV 308
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPF+++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 309 GGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 121 FRA-------------DYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAYGAYPV 167
R YGNQW YYGGQ Y+GYGY +P P DP MY AA YP+
Sbjct: 369 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAP----YYPM 423
Query: 168 YGSHQQQVS 176
YG HQQQVS
Sbjct: 424 YGGHQQQVS 432
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 103 NAEEALHKLNGTVIGKQSFR 122
+A+ ++NG ++ R
Sbjct: 251 ERTKAMTEMNGVKCSSRAMR 270
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS--QYGEIASVKIPVGK------GCGF 95
G Q+ + N TI+VG L + + L F+ EI SVK+ K G GF
Sbjct: 89 GNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGF 148
Query: 96 VQFANRENAEEALHKLNGTVI--GKQSFRADY 125
V+F + + A++ L + NGT + Q FR ++
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNW 180
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/194 (58%), Positives = 134/194 (69%), Gaps = 19/194 (9%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQ-----GGYASNGAPGQGPQSEGDSSN 55
MTEMNGVYCSSR MRIG ATP+K S ++Q YSSQ GGYASNGA G QS+GDSSN
Sbjct: 236 MTEMNGVYCSSRAMRIGVATPKKPSAHEQ-YSSQAVILSGGYASNGAATHGSQSDGDSSN 294
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TTIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP GKGCGFVQF++R +A+EA+ KL+G +
Sbjct: 295 TTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAI 354
Query: 116 IGKQS-------------FRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAY 162
IGKQ+ R D G+QW+G Y G Q Y GYGY D MYA AA
Sbjct: 355 IGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYG 414
Query: 163 GAYPVYGSHQQQVS 176
+ YG+HQQ VS
Sbjct: 415 ASSNRYGNHQQPVS 428
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC------GFVQFANRENAEEAL 108
N TI++G L + + L FSQ GE+ SVKI K GFV+F AE+ L
Sbjct: 83 NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVL 142
Query: 109 HKLNGTVI--GKQSFRADY 125
NGT++ +Q FR ++
Sbjct: 143 QSYNGTMMPNTEQPFRLNW 161
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S+ +IFVG L +VTD LR F S+Y + K+ V KG GFV+F +
Sbjct: 175 SDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSR 234
Query: 107 ALHKLNGTVIGKQSFR 122
A+ ++NG ++ R
Sbjct: 235 AMTEMNGVYCSSRAMR 250
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/150 (59%), Positives = 113/150 (75%), Gaps = 17/150 (11%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQ-----GGYASNGAPGQGPQSEGDSSN 55
+TEMNG YCS+R MR+G ATP+++ QQQ+SSQ GG+ SNG+ G G QS+G+S+N
Sbjct: 261 LTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVGKGCGFVQFA+R++AE+A+ LNGTV
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTV 380
Query: 116 IGKQS------------FRADYGNQWSGAY 133
IGK + +R D G QW+G Y
Sbjct: 381 IGKNTVRLSWGRSPNKQWRGDSGQQWNGGY 410
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEA 107
+ ++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Query: 108 LHKLNGTVIGKQSFRA 123
L ++NG + R
Sbjct: 261 LTEMNGAYCSNRQMRV 276
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T++VG L + + L FS GE++SVK+ K G GFV+F +R AEE L
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 111 LNGTVI--GKQSFRADY 125
+G+V+ Q FR ++
Sbjct: 169 YSGSVMPNSDQPFRINW 185
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 118/167 (70%), Gaps = 16/167 (9%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG +CSSR MR+G ATP++++ Y QQ SQ + G G G S+G+S+N+TIFV
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VT+EDL QPFS +GE+ SVKIPVGKGCGFVQFANR++AEEA+ LNGTVIGK +
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNT 391
Query: 121 ------------FRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMY 155
+R+D GNQW+G Y GQ Y+ GYA D +MY
Sbjct: 392 VRLSWGRSPNKQWRSDSGNQWNGGYSRGQGYNN-GYA---NQDSNMY 434
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T++VG L + + L FS E++SVK+ K G GFV+F +R AEEAL
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 111 LNGTVI--GKQSFRADY 125
+G + +Q FR ++
Sbjct: 180 FSGVTMPNAEQPFRLNW 196
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEA 107
+ +IFVG L P+V+D L + F+ +Y + K+ + KG GFV+F + A
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 108 LHKLNGTVIGKQSFRADYGNQWSGAYYGGQ 137
+ ++NG + R A YG Q
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQ 301
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 104/186 (55%), Gaps = 27/186 (14%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CS+RPMRIG A +K G Q+ + Q A+ G E D +NTTIFV
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQG--------ESDPNNTTIFV 286
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLDP V +E LRQ FS YGE+ VKI GK CGFVQF R +AE+AL LNGT +G QS
Sbjct: 287 GGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQS 346
Query: 121 FRADYG----------NQWSGAYYGGQVYDGYGYAI---PPPNDPSMYAAAAAAYGAYPV 167
R +G QW G+ Y A PP DP+MY YG YP
Sbjct: 347 IRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMY------YGNYPG 400
Query: 168 YGSHQQ 173
Y ++QQ
Sbjct: 401 YANYQQ 406
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFAN 100
+ DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV+FA+
Sbjct: 168 ERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFAD 227
Query: 101 RENAEEALHKLNGTVIGKQSFR 122
A+ ++NG + + R
Sbjct: 228 ESEQLRAMTEMNGVLCSTRPMR 249
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 28 QQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
QQQY + N +P P + ++++G L + + L F GE+ S K+
Sbjct: 61 QQQYGAMATTNPNPSPTGNP-----NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKV 115
Query: 88 PVGK------GCGFVQFANRENAEEALHKLNGTVIG--KQSFRADYGN 127
K G GF++F + AE L NGT++ +Q+FR ++ +
Sbjct: 116 IRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWAS 163
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 113/197 (57%), Gaps = 23/197 (11%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY-----ASNGAPGQG--PQSEGDS 53
M EMNG+YCS+RPMRI AATP+K+ G QQQY ++ Y ++ AP Q E D
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG 113
+ TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF R +AEEA+ ++ G
Sbjct: 235 TCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 114 TVIGKQSFRADYG--------------NQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAA 159
VIG+Q+ R + NQW+G Y GQ YD Y Y DPS+YA
Sbjct: 295 QVIGQQAVRISWSKNPGQDGWVTQADPNQWNGYYGYGQGYDAYAYGA--TQDPSVYAYGG 352
Query: 160 AAYGAYPVYGSHQQQVS 176
Y YP G Q +S
Sbjct: 353 YGYPQYPQQGEGTQDIS 369
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T+++G L V + L FSQ GE+ SVK+ K G GF++F + AE L
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 111 LNGTVI--GKQSFRADYGNQWSG 131
NGT + + +FR ++ + SG
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSG 107
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 57 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 109
+IFVG L P+VTD L++ F Y + K+ KG GFV+FA A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 110 KLNGTVIGKQSFR 122
++NG + R
Sbjct: 177 EMNGLYCSTRPMR 189
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 103/171 (60%), Gaps = 31/171 (18%)
Query: 1 MTEMNGVYCSSRPMRIGAA-----TPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSN 55
MTEMNG YCS+RPMRIG A P + + YQ ++QG A + D +N
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQ---NTQGANAG----------DNDPNN 259
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TTIFVGGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN+ +AE AL LNGT
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ 319
Query: 116 IGKQSFRADYGN---------QWS-GAYYG--GQVYDGYGYAI-PPPNDPS 153
+G QS R +G QW+ G YYG Q GYGYA PP DP+
Sbjct: 320 LGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGYGYAAQPPTQDPN 370
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 37 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------ 89
+A GA + Q+EG + TIFVG L P VTD L F YG + K+ +
Sbjct: 137 WAQAGAGEKRFQTEG--PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGR 194
Query: 90 GKGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122
KG GFV+FA+ A+ ++NG + R
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMR 227
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 44 GQGPQSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFV 96
G G Q+ G +S+ ++++G L + + + F+Q GE S K+ K G GF+
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 97 QFANRENAEEALHKLNGTVI--GKQSFRADY 125
+F + AE L NG + +Q+FR ++
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNW 137
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 96/158 (60%), Gaps = 20/158 (12%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRK-SSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIF 59
MTEMNGV CS+RPMRIG A +K +G + Y S G ++ D +NTT+F
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAA---------GVTTDNDPNNTTVF 264
Query: 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ 119
VGGLD +VTD+ L+ FSQYGEI VKIP GK CGFVQF+ + AEEAL LNG +G
Sbjct: 265 VGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGT 324
Query: 120 SFRADYG----NQWSGA----YYG--GQVYDGYGYAIP 147
+ R +G N+ SG YYG GQ + YGY +P
Sbjct: 325 TVRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQYGYTMP 362
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPVG------KGCGFVQFANRENA 104
DS + TIFVG L +VTD L + F + Y + K+ + KG GFV+F++
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 105 EEALHKLNGTVIGKQSFR 122
A+ ++NG + R
Sbjct: 211 IRAMTEMNGVPCSTRPMR 228
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T+++G L + + L F+ GE+ S K+ K G GF++FA+ AE L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 111 LNGTVI---GKQSFRADYGNQWSG 131
N I Q FR ++ + SG
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSG 146
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 94/168 (55%), Gaps = 26/168 (15%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG YCSSRPMR G A +K Q Y + QG E D +NTTIFV
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKKPLTMQP-----ASYQNT----QGNSGESDPTNTTIFV 282
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
G +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+ANR AE+AL LNGT +G QS
Sbjct: 283 GAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 121 FRADYGNQWSG----------------AYYGGQVYDGYGYAIPPPNDP 152
R +G S Y Q Y+ YGYA PPP DP
Sbjct: 343 IRLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYGYA-PPPQDP 389
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFV 96
G G + + + T+FVG L P+VTD L + F + Y + K+ KG GFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 97 QFANRENAEEALHKLNGTVIGKQSFR 122
+FA+ A+ ++NG + R
Sbjct: 221 RFADESEQIRAMTEMNGQYCSSRPMR 246
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
++++G L P + + L F GE + K+ K G GF++F N AE L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 111 LNGTVI--GKQSFRADY 125
NG + +Q+FR ++
Sbjct: 141 YNGAPMPSSEQAFRLNW 157
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG------GYASNGAPGQGPQSEGDSS 54
+ EM G C RP+R+G ATP+ + + G+ S P PQ D++
Sbjct: 245 LAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPV--PQF-ADTA 301
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
N+T+FVGGL V++E+L+ F +GEI VKIP GKGCGFVQF NR++AE A+++L G
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGY 361
Query: 115 VIGKQSFRADYG 126
+G R +G
Sbjct: 362 PLGNSRIRLSWG 373
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 36 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------ 88
+AS G G +S +S +IFVG L PNV + D+ F S+Y S KI
Sbjct: 168 NWASGG--GLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 89 VGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSGAY 133
V +G GFV+F + + + AL ++ G + G + R S A+
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAH 270
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG------FVQFANRENAEEALH 109
TT+++G L+P VT+ ++Q ++ G+ VK+ + G FV+FA+ A A+
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 110 KLNGTVIG-KQSFRADYG 126
N + G F+ ++
Sbjct: 153 MNNKPIPGTNHLFKLNWA 170
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 21/138 (15%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEG--------- 51
+ M G C RP+RI A+P+ S+ A++ A G P S
Sbjct: 241 LMHMQGYLCQGRPLRISVASPK----------SRASIAADSALGIVPTSTSNRQPNQDLC 290
Query: 52 --DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 109
D NTT+FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ++ + AE+A++
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAIN 350
Query: 110 KLNGTVIGKQSFRADYGN 127
+ G ++G R +G+
Sbjct: 351 TMQGALVGTSHIRLAWGH 368
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 27 YQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASV 85
++ +++ GG N + P+ +IFVG L P D DL F S Y S
Sbjct: 160 FKLNWATGGGIQHNNFVSRDPE-------FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSA 212
Query: 86 KIPV------GKGCGFVQFANRENAEEALHKLNG 113
KI V + GFV+F++ + + AL + G
Sbjct: 213 KIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG 246
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 40 NGAPGQGPQSE----GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG- 94
N +P P + G + T+++G L+P + ++Q ++ E +VK+ K
Sbjct: 65 NCSPSSTPLQDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSS 124
Query: 95 -------FVQFANRENAEEALHKLNGTVI 116
FVQF++ AE AL K N T+I
Sbjct: 125 ETLISYCFVQFSSSAAAERALMKYNNTMI 153
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 112 NGTVIGKQSFRADYG 126
G ++G R +G
Sbjct: 416 QGFIVGGSPIRLSWG 430
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 57 TIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---PV---GKGCGFVQFANRENAEEALH 109
++FVG L P T+ DL F +++ + +V++ P+ + GFV+F + + AL
Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252
Query: 110 KLNGTVIGKQSFRADYG 126
+++G ++ R Y
Sbjct: 253 EMSGKWFQGRALRVAYA 269
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 36/162 (22%)
Query: 1 MTEMNGVYCSSRPMRIGAAT------------PRKSSGYQQQ-----YSSQG-GYASNGA 42
++EM GV+ + R +++G + R SS + + S+G + SNG
Sbjct: 222 LSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGN 281
Query: 43 PGQGPQSE------------------GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS 84
G + D +NTT+F+GGL VT+++LR F +G I
Sbjct: 282 NNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVY 341
Query: 85 VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
VKIPVGK CGFVQ+ +R +AE A+ + G I R +G
Sbjct: 342 VKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWG 383
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAEE 106
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F N + +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 107 ALHKLNGTVIGKQSFRA 123
AL ++ G + ++ +
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N +I + +G
Sbjct: 288 FNKLIINGRRLNVKWG 303
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 108 LHKL-NGTVIGKQSFRADYG 126
+L N VI Q + +G
Sbjct: 280 AQELSNRLVINGQRLKLTWG 299
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa
subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D S T+++GGLD VT++DLR F +GEI ++++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 112 NGTVIGK 118
++ K
Sbjct: 284 ANKLVIK 290
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 108 LHKL-NGTVIGKQSFRADYGN 127
+L N V+ Q + +G
Sbjct: 280 AEELSNRLVVNGQRLKLTWGR 300
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 63.2 bits (152), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 22 RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81
R+S + + G + APG GD S T +++G ++P + +E L Q F ++G
Sbjct: 242 RRSMDVPSRRNRSSGVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGP 299
Query: 82 IASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
+ASVKI + CGFV F NR +AE AL LNG +I + +G
Sbjct: 300 LASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWG 353
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 22 RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81
R+S + + G + APG GD S T +++G ++P + +E L Q F ++G
Sbjct: 242 RRSMDAPSRRNRSSGVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGP 299
Query: 82 IASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126
+ASVKI + CGFV F NR +AE AL LNG +I + +G
Sbjct: 300 LASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWG 353
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D S T+++GGL+ +T++DLR F +GEI S+++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 112 NGTVIGK 118
++ K
Sbjct: 284 ANKLVIK 290
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 46 GPQSEGDSS---NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CGF--V 96
G Q E D + +TT+++G + T+E L + FS+ GEI + + + K CGF V
Sbjct: 21 GTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 97 QFANRENAEEALHKLNGTVIGKQSFRADY------GNQWSGAYYGGQVYDGYGYAIPP 148
F +RE+ E+A+ ++GT++ + R D+ G QW GGQV D Y P
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDP 138
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 46 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFV 96
G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV
Sbjct: 263 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFV 322
Query: 97 QFANRENAEEALHKLNGTVIGKQSFRADYG 126
F NR +AE AL LNG +I + +G
Sbjct: 323 AFMNRRDAERALKNLNGKMIMSFEMKLGWG 352
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2
SV=1
Length = 420
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1
Length = 420
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2
SV=1
Length = 420
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1
Length = 420
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1
Length = 420
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1
Length = 420
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKFIVNGRRLNVKWG 303
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R++AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 21/115 (18%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 221 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 115 VI---------GKQS-------FRADYGN--QWSGAYYGGQVYDGY---GYAIPP 148
I GK+S + DY QWS Y Q Y Y G+ +PP
Sbjct: 281 TIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPP 335
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 192
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
E D T++VG L +VT+ + Q FSQ G S K+
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM 40
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKS 287
Query: 111 LNGTVIGKQSFRADYG 126
N ++ + +G
Sbjct: 288 FNKLIVNGRRLNVKWG 303
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 21/115 (18%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 204 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Query: 115 VI---------GKQS-------FRADYGN--QWSGAYYGGQVYDGY---GYAIPP 148
I GK+S + DY QWS Y Q Y Y G+ +PP
Sbjct: 264 TIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPP 318
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128
GFV F N+ +AE A+ + G +G + R ++ +
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 105
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 106 EALHKLNG-TVIGKQ 119
AL +NG ++GK+
Sbjct: 63 AALAAMNGRKILGKE 77
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
+ +M G + R +R AT RK + Y S S S+ +N T++
Sbjct: 164 IQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYESNTKQLSYDEV----VSQSSPNNCTVYC 218
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+ +NGT I
Sbjct: 219 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHV 278
Query: 121 FRADYGNQ 128
+ +G +
Sbjct: 279 VKCYWGKE 286
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-----CGFVQFANRENAEE 106
D T++VG L +VT+ + Q FSQ G + K+ + C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 107 ALHKLNGTVIGKQSFRADYGN 127
AL +NG I + + ++
Sbjct: 62 ALAAMNGRKIMGKEVKVNWAT 82
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKL 111
+FVGGL+ T+E L Q FS+YG++A V + +G GFV F N E+A++A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 112 NGTVIGKQSFRAD 124
NG + + R D
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 27/135 (20%)
Query: 32 SSQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 88
+++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 102 TTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII 161
Query: 89 VG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD---------------YGNQW 129
KG GFV F N +A+ A KL+GTV+ + + Y N W
Sbjct: 162 FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 221
Query: 130 S-----GAYYGGQVY 139
GA YG ++Y
Sbjct: 222 KLSPVVGAVYGPELY 236
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
+ +M G + R +R AT RK + Y S S ++ SN T++
Sbjct: 164 IQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYESNTKQLSYDEV----VNQSSPSNCTVYC 218
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+ +NGT I
Sbjct: 219 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 121 FRADYGNQ 128
+ +G +
Sbjct: 279 VKCYWGKE 286
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSFRADYGNQ 128
G +G + R ++ +
Sbjct: 168 GGQWLGGRQIRTNWATR 184
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-----CGFVQFANRENAEE 106
D T++VG L +VT+ + Q FSQ G + K+ + C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 107 ALHKLNGTVIGKQSFRADY 125
AL +NG I + + ++
Sbjct: 62 ALAAMNGRKIMGKEVKVNW 80
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 27/135 (20%)
Query: 32 SSQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 88
+++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 94 TTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII 153
Query: 89 VG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD---------------YGNQW 129
KG GFV F N +A+ A KL+GTV+ + + Y N W
Sbjct: 154 FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 213
Query: 130 S-----GAYYGGQVY 139
GA YG ++Y
Sbjct: 214 KLSPVVGAVYGPELY 228
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
IF+ LD ++ + L FS +G I S K+ V KG GFVQ+AN E+A++A+ KLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 113 GTVIGKQ 119
G ++ +
Sbjct: 186 GMLLNDK 192
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALH 109
++ ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 376
Query: 110 KLNGTVI 116
+L+G +I
Sbjct: 377 QLSGKMI 383
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T ++V L + TD+DL+ F +YG+I S + KG GFV F N ++A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 111 LNG 113
LNG
Sbjct: 275 LNG 277
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 28 QQQYSSQGGYASNGAPGQGPQSEGDSS-----NTTIFVGGLDPNVTDEDLRQPFSQYGEI 82
Q Q Q S A P + G ++ NT+++VG LD NVTD L F Q G +
Sbjct: 3 QVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTV 62
Query: 83 ASVKI------PVGKGCGFVQFANRENAEEALHKLN 112
+V++ G G+V F N ++A A+ +LN
Sbjct: 63 VTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN 98
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 33 SQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV 89
++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 137 TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF 196
Query: 90 G----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD---------------YGNQWS 130
KG GFV F N +A+ A KL+GTV+ + + Y N W
Sbjct: 197 NERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWK 256
Query: 131 -----GAYYGGQVY 139
GA YG ++Y
Sbjct: 257 LSPVVGAVYGPELY 270
>sp|Q84L14|NCBP2_ORYSJ Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp.
japonica GN=CBP20 PE=2 SV=1
Length = 243
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 29/148 (19%)
Query: 13 PMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDL 72
P ++ A R+ +G Q++Y + ++ T++VG + T+E
Sbjct: 8 PTKLSAYRDRRFTGTQEEYEA-----------------ALQASVTVYVGNMSFYTTEEQA 50
Query: 73 RQPFSQYGEIASVKIPVGKG----CGF--VQFANRENAEEALHKLNGTVIGKQSFRADY- 125
+ FS+ GEI + + + K CGF + + +RE+AE+A+ ++GT++ + R D+
Sbjct: 51 YELFSRAGEIRKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFD 110
Query: 126 -----GNQWSGAYYGGQVYDGYGYAIPP 148
G QW GGQV D Y P
Sbjct: 111 WGFEEGRQWGRGRSGGQVRDEYRTDYDP 138
>sp|Q8BP71|RFOX2_MOUSE RNA binding protein fox-1 homolog 2 OS=Mus musculus GN=Rbfox2 PE=1
SV=2
Length = 449
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 33 SQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV 89
++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 154 TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF 213
Query: 90 G----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD---------------YGNQWS 130
KG GFV F N +A+ A KL+GTV+ + + Y N W
Sbjct: 214 NERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWK 273
Query: 131 -----GAYYGGQVY 139
GA YG ++Y
Sbjct: 274 LSPVVGAVYGPELY 287
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 110
T+F+G L N + + + F+++GE+ SV+IP KG G+VQF+N E+A++AL
Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327
Query: 111 LNGTVIGKQSFRADY 125
L G I + R D+
Sbjct: 328 LQGEYIDNRPVRLDF 342
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC------GFVQFANRENAEEALHK 110
TIFVG L ++ DE L++ F G + ++ +G G+V F N+ AE+A+ +
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 111 LNGTVI 116
+ G I
Sbjct: 229 MQGKEI 234
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
+FVG L ++T+ED ++ F +YGE + V I +G GF++ +R AE A +L+GT++
Sbjct: 83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 142
Query: 118 KQSFRADYG 126
+ R +
Sbjct: 143 SRPLRIRFA 151
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 38/113 (33%)
Query: 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGG 62
E++G SRP+RI +A++GA + V
Sbjct: 135 ELDGTILKSRPLRIR-------------------FATHGA--------------ALTVKN 161
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
L P V++E L Q FSQ+G + + V G GFV+FA + A +AL +
Sbjct: 162 LSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVEFAAKPPARKALER 214
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112
+ +FVG L ++T+ED ++ F +YGE + V I +G GF++ +R AE A +L+
Sbjct: 78 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELD 137
Query: 113 GTVIGKQSFRADYG 126
GT++ + R +
Sbjct: 138 GTILKSRPLRIRFA 151
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 38/113 (33%)
Query: 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGG 62
E++G SRP+RI +A++GA + V
Sbjct: 135 ELDGTILKSRPLRIR-------------------FATHGA--------------ALTVKN 161
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
L P V++E L Q FSQ+G + + V G GFV+FA + A +AL +
Sbjct: 162 LSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 214
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112
+ +FVG L ++T+ED ++ F +YGE + V I +G GF++ +R AE A +L+
Sbjct: 78 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELD 137
Query: 113 GTVIGKQSFRADYG 126
GT++ + R +
Sbjct: 138 GTILKSRPLRIRFA 151
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 38/113 (33%)
Query: 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGG 62
E++G SRP+RI +A++GA + V
Sbjct: 135 ELDGTILKSRPLRIR-------------------FATHGA--------------ALTVKN 161
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
L P V++E L Q FSQ+G + + V G GFV+FA + A +AL +
Sbjct: 162 LSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 214
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112
+ +FVG L ++T+ED ++ F +YGE + V I +G GF++ +R AE A +L+
Sbjct: 79 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELD 138
Query: 113 GTVIGKQSFRADYG 126
GT++ + R +
Sbjct: 139 GTILKSRPLRIRFA 152
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 38/113 (33%)
Query: 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGG 62
E++G SRP+RI +A++GA + V
Sbjct: 136 ELDGTILKSRPLRIR-------------------FATHGA--------------ALTVKN 162
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
L P V++E L Q FSQ+G + + V G GFV+FA + A +AL +
Sbjct: 163 LSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 215
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 49 SEGDSSNTT--IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN 100
S GD+ N T IFVGGL P +TDE+ RQ F YG + V I +G GFV F +
Sbjct: 101 SGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Query: 101 RENAEEALHKLNGTVIGKQ 119
+ + LHK + GKQ
Sbjct: 161 EDAVDSVLHKTFHDLSGKQ 179
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 105
DS +FVGG+ ++ LR+ F+ YGE++ + K G GFV F++ +
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 106 EALHK 110
L +
Sbjct: 62 RVLQE 66
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKL 111
+F+GGL+ + +E L Q FS+YG+I+ V + +G GFV F N ++A++A+ +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 112 NGTVIGKQSFRAD 124
NG + + R D
Sbjct: 67 NGKAVDGRQIRVD 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,310,476
Number of Sequences: 539616
Number of extensions: 3369767
Number of successful extensions: 9199
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 505
Number of HSP's that attempted gapping in prelim test: 7321
Number of HSP's gapped (non-prelim): 1831
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)