Query 030481
Match_columns 176
No_of_seqs 219 out of 1893
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 14:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 99.9 2.3E-26 5E-31 172.3 11.9 118 1-129 121-238 (321)
2 TIGR01659 sex-lethal sex-letha 99.8 4.6E-20 1E-24 147.6 12.8 102 1-129 166-275 (346)
3 PLN03134 glycine-rich RNA-bind 99.8 8.9E-19 1.9E-23 124.1 12.6 80 52-131 31-116 (144)
4 TIGR01645 half-pint poly-U bin 99.8 1.3E-18 2.8E-23 146.7 13.8 117 1-133 166-288 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.8E-18 8.1E-23 137.2 14.0 77 54-130 268-350 (352)
6 KOG0117 Heterogeneous nuclear 99.8 1.1E-18 2.4E-23 138.9 10.4 104 3-130 228-332 (506)
7 TIGR01648 hnRNP-R-Q heterogene 99.8 6E-18 1.3E-22 142.4 13.8 102 7-132 207-310 (578)
8 TIGR01628 PABP-1234 polyadenyl 99.7 2.5E-17 5.4E-22 140.1 11.7 119 1-128 236-363 (562)
9 KOG0125 Ataxin 2-binding prote 99.7 6.6E-17 1.4E-21 124.5 8.7 80 49-128 90-173 (376)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 2.4E-16 5.3E-21 131.8 12.4 129 1-129 330-480 (481)
11 TIGR01659 sex-lethal sex-letha 99.7 1.4E-16 3E-21 127.7 10.3 78 50-127 102-185 (346)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 5.7E-16 1.2E-20 129.6 13.8 78 52-129 272-351 (481)
13 PF00076 RRM_1: RNA recognitio 99.7 1.7E-16 3.7E-21 98.4 7.9 65 58-122 1-70 (70)
14 KOG0121 Nuclear cap-binding pr 99.7 8E-17 1.7E-21 108.8 6.8 91 52-142 33-135 (153)
15 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.6E-16 5.7E-21 126.5 11.1 103 1-130 62-172 (352)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 8.9E-16 1.9E-20 129.1 14.3 127 3-129 241-375 (509)
17 TIGR01622 SF-CC1 splicing fact 99.7 5.4E-16 1.2E-20 128.9 12.4 110 3-127 149-264 (457)
18 KOG0149 Predicted RNA-binding 99.7 6.3E-16 1.4E-20 114.4 9.4 75 52-127 9-89 (247)
19 KOG0107 Alternative splicing f 99.7 5.9E-16 1.3E-20 109.8 8.5 77 54-130 9-86 (195)
20 KOG0122 Translation initiation 99.6 1.6E-15 3.5E-20 112.8 10.4 79 51-129 185-269 (270)
21 PLN03120 nucleic acid binding 99.6 1.8E-15 3.8E-20 115.1 10.1 74 55-129 4-80 (260)
22 KOG0109 RNA-binding protein LA 99.6 8.3E-16 1.8E-20 116.9 7.1 98 1-129 53-150 (346)
23 TIGR01628 PABP-1234 polyadenyl 99.6 4E-15 8.6E-20 126.7 10.8 105 1-127 146-259 (562)
24 KOG0105 Alternative splicing f 99.6 6.3E-15 1.4E-19 105.6 9.2 76 54-129 5-83 (241)
25 KOG0127 Nucleolar protein fibr 99.6 5.5E-15 1.2E-19 120.6 9.2 127 2-129 65-196 (678)
26 PF14259 RRM_6: RNA recognitio 99.6 1.2E-14 2.5E-19 90.5 8.7 65 58-122 1-70 (70)
27 TIGR01648 hnRNP-R-Q heterogene 99.6 8.9E-15 1.9E-19 123.4 9.6 76 52-127 55-136 (578)
28 PLN03213 repressor of silencin 99.6 1.6E-14 3.5E-19 116.9 9.7 75 53-127 8-86 (759)
29 KOG4207 Predicted splicing fac 99.6 7.6E-15 1.6E-19 106.8 6.6 77 51-127 9-91 (256)
30 KOG0131 Splicing factor 3b, su 99.6 3.8E-15 8.2E-20 106.4 4.8 103 2-130 69-178 (203)
31 KOG0117 Heterogeneous nuclear 99.6 2.4E-14 5.3E-19 114.4 9.6 83 45-127 73-162 (506)
32 PLN03121 nucleic acid binding 99.5 4.2E-14 9.1E-19 106.1 9.9 75 54-129 4-81 (243)
33 smart00362 RRM_2 RNA recogniti 99.5 7.5E-14 1.6E-18 85.9 9.4 68 57-124 1-72 (72)
34 TIGR01645 half-pint poly-U bin 99.5 3.2E-14 7E-19 120.4 10.0 75 53-127 105-185 (612)
35 KOG0145 RNA-binding protein EL 99.5 1.1E-14 2.4E-19 109.4 6.0 102 1-129 100-209 (360)
36 KOG0114 Predicted RNA-binding 99.5 9.6E-14 2.1E-18 90.6 9.5 76 52-127 15-93 (124)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.1E-13 2.3E-18 116.5 11.6 128 1-128 354-501 (509)
38 KOG0144 RNA-binding protein CU 99.5 1.4E-14 3.1E-19 115.3 5.6 77 53-129 122-206 (510)
39 PF13893 RRM_5: RNA recognitio 99.5 1.3E-13 2.8E-18 82.2 8.3 55 72-126 1-56 (56)
40 KOG0148 Apoptosis-promoting RN 99.5 7.2E-14 1.6E-18 105.5 8.7 76 55-130 62-143 (321)
41 KOG0113 U1 small nuclear ribon 99.5 1.4E-13 3.1E-18 105.0 9.6 77 51-127 97-179 (335)
42 KOG0123 Polyadenylate-binding 99.5 1.1E-13 2.5E-18 111.6 8.2 95 1-128 54-152 (369)
43 KOG0126 Predicted RNA-binding 99.5 5.6E-15 1.2E-19 105.5 0.6 75 53-127 33-113 (219)
44 KOG0109 RNA-binding protein LA 99.5 8.3E-14 1.8E-18 106.1 6.0 73 56-130 3-75 (346)
45 KOG0127 Nucleolar protein fibr 99.5 7E-13 1.5E-17 108.5 11.2 75 53-127 290-376 (678)
46 KOG0153 Predicted RNA-binding 99.5 4.3E-13 9.4E-18 104.3 9.2 88 47-134 220-308 (377)
47 KOG0111 Cyclophilin-type pepti 99.5 7.9E-14 1.7E-18 102.5 4.8 77 53-129 8-90 (298)
48 cd00590 RRM RRM (RNA recogniti 99.4 1.3E-12 2.7E-17 80.8 9.3 69 57-125 1-74 (74)
49 TIGR01622 SF-CC1 splicing fact 99.4 1.1E-12 2.4E-17 109.1 11.0 77 51-128 85-167 (457)
50 KOG0124 Polypyrimidine tract-b 99.4 4.8E-14 1E-18 110.5 2.6 111 1-127 172-288 (544)
51 KOG0130 RNA-binding protein RB 99.4 6.2E-13 1.3E-17 90.9 6.0 81 49-129 66-152 (170)
52 KOG0145 RNA-binding protein EL 99.4 1.7E-12 3.8E-17 97.7 8.8 80 51-130 37-122 (360)
53 COG0724 RNA-binding proteins ( 99.4 2.2E-12 4.8E-17 98.8 9.6 73 55-127 115-193 (306)
54 smart00360 RRM RNA recognition 99.4 2.6E-12 5.6E-17 78.6 8.0 65 60-124 1-71 (71)
55 KOG0144 RNA-binding protein CU 99.4 1.3E-12 2.9E-17 104.2 8.2 79 51-129 30-117 (510)
56 KOG0110 RNA-binding protein (R 99.4 5.2E-13 1.1E-17 111.9 6.1 111 1-129 577-693 (725)
57 KOG0108 mRNA cleavage and poly 99.3 2.9E-12 6.3E-17 104.7 7.8 74 56-129 19-98 (435)
58 KOG0146 RNA-binding protein ET 99.3 3E-12 6.6E-17 96.8 6.4 75 54-128 18-100 (371)
59 KOG0131 Splicing factor 3b, su 99.3 2.6E-12 5.6E-17 92.0 5.5 75 53-127 7-87 (203)
60 KOG4206 Spliceosomal protein s 99.3 7.2E-12 1.6E-16 92.6 8.0 78 53-130 7-91 (221)
61 KOG0132 RNA polymerase II C-te 99.3 5.8E-12 1.3E-16 106.7 7.6 73 55-127 421-493 (894)
62 KOG0147 Transcriptional coacti 99.3 3.8E-12 8.1E-17 104.2 5.7 112 3-127 239-356 (549)
63 KOG4205 RNA-binding protein mu 99.3 2.1E-11 4.6E-16 95.8 8.2 101 7-129 70-176 (311)
64 KOG4212 RNA-binding protein hn 99.3 5.9E-11 1.3E-15 95.2 10.3 75 53-127 42-122 (608)
65 KOG0415 Predicted peptidyl pro 99.2 3E-11 6.5E-16 94.6 6.9 83 47-129 231-319 (479)
66 KOG4206 Spliceosomal protein s 99.2 1.6E-10 3.4E-15 85.5 9.7 127 1-127 69-220 (221)
67 smart00361 RRM_1 RNA recogniti 99.2 1E-10 2.2E-15 72.8 7.3 56 69-124 2-70 (70)
68 KOG0124 Polypyrimidine tract-b 99.2 2.9E-11 6.4E-16 95.0 4.4 73 55-127 113-191 (544)
69 KOG0146 RNA-binding protein ET 99.2 4.5E-11 9.8E-16 90.5 5.1 82 49-130 279-366 (371)
70 KOG4212 RNA-binding protein hn 99.1 1.6E-10 3.4E-15 92.8 7.8 78 49-126 530-608 (608)
71 KOG4661 Hsp27-ERE-TATA-binding 99.1 2.4E-10 5.3E-15 94.4 6.7 81 52-132 402-488 (940)
72 KOG0123 Polyadenylate-binding 99.1 2.8E-10 6E-15 92.1 6.0 109 1-128 132-245 (369)
73 KOG0110 RNA-binding protein (R 99.0 9.5E-10 2.1E-14 92.7 8.2 75 56-130 516-599 (725)
74 KOG0106 Alternative splicing f 99.0 6.8E-10 1.5E-14 82.7 5.2 73 56-130 2-74 (216)
75 KOG1190 Polypyrimidine tract-b 99.0 4.5E-09 9.7E-14 83.8 9.3 128 1-128 352-490 (492)
76 KOG0151 Predicted splicing reg 99.0 7.1E-09 1.5E-13 87.6 10.8 83 48-130 167-258 (877)
77 KOG4205 RNA-binding protein mu 99.0 8.3E-10 1.8E-14 86.9 4.9 75 54-129 5-85 (311)
78 KOG0116 RasGAP SH3 binding pro 98.9 8.4E-09 1.8E-13 84.2 10.3 81 53-134 286-372 (419)
79 KOG4208 Nucleolar RNA-binding 98.9 4.6E-09 1E-13 76.8 7.4 77 53-129 47-130 (214)
80 KOG0106 Alternative splicing f 98.9 5E-09 1.1E-13 78.1 6.0 116 1-126 52-168 (216)
81 KOG1457 RNA binding protein (c 98.9 2.4E-08 5.3E-13 74.0 9.1 79 50-128 29-117 (284)
82 KOG4660 Protein Mei2, essentia 98.8 5.1E-09 1.1E-13 86.3 4.6 72 51-122 71-143 (549)
83 KOG0533 RRM motif-containing p 98.8 4.1E-08 8.9E-13 74.7 8.0 77 51-127 79-160 (243)
84 KOG0226 RNA-binding proteins [ 98.7 2.3E-08 5E-13 75.4 5.8 78 49-126 184-267 (290)
85 KOG1548 Transcription elongati 98.7 7.5E-08 1.6E-12 75.5 7.9 82 47-128 126-220 (382)
86 KOG1190 Polypyrimidine tract-b 98.6 2.6E-07 5.7E-12 73.9 8.0 73 55-127 297-371 (492)
87 KOG4454 RNA binding protein (R 98.6 2.6E-08 5.7E-13 73.6 1.8 76 52-127 6-85 (267)
88 KOG0120 Splicing factor U2AF, 98.6 2.8E-07 6E-12 76.5 7.9 124 1-127 348-490 (500)
89 PF04059 RRM_2: RNA recognitio 98.5 6.1E-07 1.3E-11 59.0 7.7 72 56-127 2-85 (97)
90 KOG4209 Splicing factor RNPS1, 98.5 1.6E-07 3.6E-12 71.3 5.7 79 49-128 95-179 (231)
91 PF11608 Limkain-b1: Limkain b 98.5 5.4E-07 1.2E-11 57.0 6.6 68 56-127 3-75 (90)
92 KOG1456 Heterogeneous nuclear 98.5 2.4E-06 5.2E-11 67.9 11.6 79 51-129 283-363 (494)
93 KOG1548 Transcription elongati 98.5 2.6E-06 5.7E-11 67.0 11.2 126 2-127 201-350 (382)
94 KOG1456 Heterogeneous nuclear 98.5 5.1E-06 1.1E-10 66.1 12.4 78 51-128 116-198 (494)
95 KOG0147 Transcriptional coacti 98.5 6.3E-07 1.4E-11 74.1 7.6 57 70-126 468-525 (549)
96 PF08777 RRM_3: RNA binding mo 98.4 5.9E-07 1.3E-11 60.2 5.5 69 56-124 2-75 (105)
97 KOG0120 Splicing factor U2AF, 98.4 6.4E-07 1.4E-11 74.4 6.4 81 49-129 283-369 (500)
98 KOG0105 Alternative splicing f 98.4 7.4E-06 1.6E-10 59.4 10.9 122 1-125 62-186 (241)
99 KOG1457 RNA binding protein (c 98.4 4.1E-07 8.9E-12 67.6 3.9 65 53-117 208-274 (284)
100 KOG4211 Splicing factor hnRNP- 98.3 3E-06 6.5E-11 69.4 8.0 74 52-127 7-84 (510)
101 COG5175 MOT2 Transcriptional r 98.3 1.8E-06 4E-11 67.7 6.3 74 54-127 113-201 (480)
102 KOG4211 Splicing factor hnRNP- 98.2 7.3E-06 1.6E-10 67.2 8.4 74 53-127 101-180 (510)
103 PF14605 Nup35_RRM_2: Nup53/35 98.2 5.5E-06 1.2E-10 48.5 5.0 52 56-108 2-53 (53)
104 KOG1995 Conserved Zn-finger pr 98.0 1.8E-05 3.9E-10 62.6 6.9 81 51-131 62-156 (351)
105 PF05172 Nup35_RRM: Nup53/35/4 98.0 4.7E-05 1E-09 50.4 7.4 72 54-127 5-90 (100)
106 KOG0112 Large RNA-binding prot 97.7 6.6E-05 1.4E-09 65.7 6.1 80 51-130 451-532 (975)
107 KOG3152 TBP-binding protein, a 97.7 1.6E-05 3.5E-10 60.3 2.1 67 54-120 73-157 (278)
108 KOG4849 mRNA cleavage factor I 97.7 0.00011 2.4E-09 58.2 6.0 67 54-120 79-153 (498)
109 KOG4307 RNA binding protein RB 97.7 0.0002 4.4E-09 61.3 7.8 70 56-125 868-943 (944)
110 KOG2314 Translation initiation 97.6 0.00042 9E-09 58.1 8.1 75 53-127 56-142 (698)
111 PF08952 DUF1866: Domain of un 97.6 0.00045 9.7E-09 48.6 7.1 73 53-128 25-106 (146)
112 KOG4210 Nuclear localization s 97.6 9E-05 2E-09 58.2 4.0 78 54-132 183-267 (285)
113 KOG2416 Acinus (induces apopto 97.5 0.00019 4.1E-09 60.4 5.9 78 49-127 438-520 (718)
114 KOG1365 RNA-binding protein Fu 97.5 0.00041 8.9E-09 55.7 7.0 75 53-127 278-360 (508)
115 KOG0129 Predicted RNA-binding 97.4 0.00037 8E-09 57.8 6.3 59 52-111 256-326 (520)
116 KOG0115 RNA-binding protein p5 97.4 0.00024 5.3E-09 54.0 4.4 78 3-114 13-95 (275)
117 KOG4676 Splicing factor, argin 97.4 0.00022 4.8E-09 57.3 4.1 71 56-127 8-88 (479)
118 KOG1855 Predicted RNA-binding 97.3 0.00033 7.3E-09 56.8 4.8 61 52-112 228-307 (484)
119 KOG2202 U2 snRNP splicing fact 97.3 9.6E-05 2.1E-09 56.1 1.4 57 71-127 84-146 (260)
120 KOG2193 IGF-II mRNA-binding pr 97.3 0.00026 5.7E-09 57.4 3.8 72 56-127 2-74 (584)
121 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.4E-08 51.5 6.1 58 70-127 301-365 (378)
122 KOG0129 Predicted RNA-binding 97.2 0.0015 3.2E-08 54.3 6.9 61 49-109 364-431 (520)
123 PF15023 DUF4523: Protein of u 97.0 0.0043 9.3E-08 43.4 7.0 74 51-126 82-159 (166)
124 KOG2591 c-Mpl binding protein, 97.0 0.0014 3.1E-08 54.9 5.2 73 52-125 172-248 (684)
125 PF10309 DUF2414: Protein of u 96.9 0.0078 1.7E-07 36.2 6.4 55 55-111 5-62 (62)
126 PF04847 Calcipressin: Calcipr 96.8 0.0071 1.5E-07 44.5 7.0 62 68-129 8-71 (184)
127 KOG2068 MOT2 transcription fac 96.5 0.00086 1.9E-08 52.9 0.7 74 54-127 76-161 (327)
128 KOG2193 IGF-II mRNA-binding pr 96.2 9.3E-05 2E-09 60.0 -6.4 98 1-127 54-155 (584)
129 KOG2135 Proteins containing th 96.1 0.0059 1.3E-07 50.4 3.3 76 53-129 370-446 (526)
130 KOG4307 RNA binding protein RB 96.1 0.0074 1.6E-07 52.1 3.9 76 51-126 430-511 (944)
131 KOG4285 Mitotic phosphoprotein 96.0 0.059 1.3E-06 42.3 8.5 65 55-121 197-261 (350)
132 PF07576 BRAP2: BRCA1-associat 96.0 0.089 1.9E-06 35.4 8.4 63 56-118 13-81 (110)
133 KOG4574 RNA-binding protein (c 96.0 0.011 2.4E-07 52.0 4.9 73 57-129 300-374 (1007)
134 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.017 3.7E-07 42.3 4.6 74 54-127 6-96 (176)
135 KOG0112 Large RNA-binding prot 95.7 0.002 4.4E-08 56.8 -0.9 79 48-126 365-448 (975)
136 PF08675 RNA_bind: RNA binding 95.7 0.12 2.7E-06 32.9 7.3 56 54-112 8-63 (87)
137 KOG0128 RNA-binding protein SA 95.7 0.00053 1.1E-08 59.9 -4.5 63 53-115 665-733 (881)
138 KOG0128 RNA-binding protein SA 95.6 0.0057 1.2E-07 53.7 1.4 75 53-127 734-813 (881)
139 KOG1365 RNA-binding protein Fu 95.5 0.13 2.9E-06 41.7 8.7 66 56-122 162-236 (508)
140 PF03880 DbpA: DbpA RNA bindin 95.1 0.18 3.9E-06 31.3 6.8 67 57-126 2-74 (74)
141 KOG2253 U1 snRNP complex, subu 94.5 0.047 1E-06 46.9 3.9 79 44-125 29-107 (668)
142 PF11767 SET_assoc: Histone ly 94.2 0.38 8.3E-06 29.3 6.4 55 66-123 11-65 (66)
143 COG0724 RNA-binding proteins ( 93.8 0.18 4E-06 37.9 5.8 86 1-90 174-260 (306)
144 KOG0804 Cytoplasmic Zn-finger 93.5 0.27 5.8E-06 40.8 6.2 65 54-118 73-142 (493)
145 KOG4410 5-formyltetrahydrofola 93.1 0.6 1.3E-05 36.6 7.3 50 53-102 328-378 (396)
146 KOG4660 Protein Mei2, essentia 91.7 0.37 8.1E-06 40.8 5.0 37 91-127 431-471 (549)
147 KOG2318 Uncharacterized conser 91.4 1.3 2.8E-05 38.0 7.9 74 52-125 171-304 (650)
148 KOG4019 Calcineurin-mediated s 89.0 0.32 7E-06 35.5 2.2 75 55-129 10-90 (193)
149 PF13893 RRM_5: RNA recognitio 88.1 0.12 2.6E-06 29.9 -0.4 18 2-19 39-56 (56)
150 KOG0111 Cyclophilin-type pepti 87.8 0.35 7.6E-06 36.5 1.8 26 1-26 69-94 (298)
151 PLN03134 glycine-rich RNA-bind 84.1 0.55 1.2E-05 33.1 1.2 25 1-25 93-117 (144)
152 KOG4210 Nuclear localization s 83.2 0.92 2E-05 35.8 2.2 75 53-127 86-166 (285)
153 KOG4483 Uncharacterized conser 80.9 3.6 7.7E-05 33.9 4.8 55 54-109 390-445 (528)
154 PF10567 Nab6_mRNP_bdg: RNA-re 76.2 5.4 0.00012 31.5 4.4 76 52-127 12-106 (309)
155 KOG4207 Predicted splicing fac 74.4 1 2.3E-05 33.7 0.1 24 1-24 72-95 (256)
156 KOG4676 Splicing factor, argin 70.4 0.49 1.1E-05 38.6 -2.6 61 56-117 152-214 (479)
157 KOG0108 mRNA cleavage and poly 66.5 5.4 0.00012 33.5 2.6 26 1-26 77-102 (435)
158 KOG1295 Nonsense-mediated deca 65.1 12 0.00025 30.7 4.1 63 54-116 6-77 (376)
159 PF07292 NID: Nmi/IFP 35 domai 65.1 4.6 0.0001 26.0 1.6 26 52-77 49-74 (88)
160 KOG2295 C2H2 Zn-finger protein 62.3 1.6 3.6E-05 37.2 -1.1 68 54-121 230-303 (648)
161 PF15513 DUF4651: Domain of un 60.7 20 0.00043 21.5 3.6 19 70-88 9-27 (62)
162 KOG0125 Ataxin 2-binding prote 60.1 3.5 7.7E-05 33.0 0.5 23 2-24 154-176 (376)
163 COG5638 Uncharacterized conser 57.5 74 0.0016 26.7 7.5 37 52-88 143-184 (622)
164 KOG4454 RNA binding protein (R 54.1 3.2 7E-05 31.5 -0.6 62 54-115 79-149 (267)
165 PF03439 Spt5-NGN: Early trans 53.7 39 0.00085 21.3 4.5 36 81-116 33-69 (84)
166 PRK14548 50S ribosomal protein 53.4 51 0.0011 21.0 4.9 54 57-110 22-80 (84)
167 PF02714 DUF221: Domain of unk 52.2 17 0.00037 28.9 3.2 32 94-127 1-32 (325)
168 PF03468 XS: XS domain; Inter 51.2 15 0.00032 25.0 2.3 42 67-108 29-74 (116)
169 PLN03213 repressor of silencin 45.8 7.4 0.00016 33.1 0.2 21 1-21 67-87 (759)
170 TIGR03636 L23_arch archaeal ri 45.8 74 0.0016 19.9 5.0 54 57-110 15-73 (77)
171 PF00403 HMA: Heavy-metal-asso 42.8 65 0.0014 18.4 6.0 54 57-110 1-58 (62)
172 PF11411 DNA_ligase_IV: DNA li 39.4 21 0.00045 18.9 1.2 16 65-80 19-34 (36)
173 PF11823 DUF3343: Protein of u 38.9 41 0.00088 20.4 2.8 30 92-121 2-31 (73)
174 KOG0126 Predicted RNA-binding 37.3 22 0.00047 26.3 1.5 25 1-25 94-118 (219)
175 KOG4008 rRNA processing protei 34.0 35 0.00076 26.2 2.2 34 52-85 37-70 (261)
176 PRK12448 dihydroxy-acid dehydr 32.9 81 0.0018 27.9 4.4 36 96-133 452-487 (615)
177 TIGR00110 ilvD dihydroxy-acid 31.8 93 0.002 27.1 4.6 38 91-131 383-420 (535)
178 PRK00911 dihydroxy-acid dehydr 31.6 89 0.0019 27.3 4.4 38 91-131 398-435 (552)
179 PF09707 Cas_Cas2CT1978: CRISP 30.7 1E+02 0.0022 19.7 3.6 46 54-99 24-72 (86)
180 PRK11634 ATP-dependent RNA hel 30.2 2.4E+02 0.0051 25.1 7.0 69 56-127 487-561 (629)
181 COG0129 IlvD Dihydroxyacid deh 29.9 1.1E+02 0.0023 26.9 4.6 36 96-133 419-454 (575)
182 PF13689 DUF4154: Domain of un 29.0 55 0.0012 22.7 2.5 19 2-20 43-61 (145)
183 PF12829 Mhr1: Transcriptional 28.7 1.4E+02 0.0031 19.3 4.1 51 62-112 19-72 (91)
184 PF08544 GHMP_kinases_C: GHMP 26.9 1.5E+02 0.0033 17.8 5.8 41 70-111 37-79 (85)
185 PRK06131 dihydroxy-acid dehydr 25.8 1.5E+02 0.0032 26.1 4.8 38 91-131 401-440 (571)
186 PRK11558 putative ssRNA endonu 25.5 1.2E+02 0.0026 20.0 3.3 47 54-100 26-75 (97)
187 KOG4365 Uncharacterized conser 23.5 11 0.00024 31.6 -2.2 72 55-127 3-80 (572)
188 PF14893 PNMA: PNMA 23.0 60 0.0013 26.3 1.9 47 54-100 17-71 (331)
189 cd04894 ACT_ACR-like_1 ACT dom 22.1 1.4E+02 0.003 18.1 2.8 38 62-99 6-45 (69)
190 PF13037 DUF3898: Domain of un 21.9 92 0.002 20.0 2.2 46 67-112 31-90 (91)
191 KOG4213 RNA-binding protein La 21.8 1.2E+02 0.0026 22.5 3.0 51 55-110 111-169 (205)
192 PRK10629 EnvZ/OmpR regulon mod 21.3 2.8E+02 0.0062 19.0 7.6 71 54-126 34-108 (127)
193 PRK13016 dihydroxy-acid dehydr 21.3 2.1E+02 0.0045 25.3 4.8 38 91-131 406-445 (577)
194 COG0030 KsgA Dimethyladenosine 21.2 1.5E+02 0.0033 23.2 3.7 34 55-88 95-128 (259)
195 cd00027 BRCT Breast Cancer Sup 21.2 1.4E+02 0.0029 16.6 2.9 45 56-102 2-46 (72)
196 KOG2671 Putative RNA methylase 20.8 1.4E+02 0.003 24.7 3.4 43 66-108 13-57 (421)
197 PF00054 Laminin_G_1: Laminin 20.3 26 0.00057 23.8 -0.6 11 54-64 91-101 (131)
198 PRK08559 nusG transcription an 20.3 3.2E+02 0.0069 19.2 5.7 34 82-115 36-70 (153)
199 KOG0156 Cytochrome P450 CYP2 s 20.2 2.2E+02 0.0047 24.5 4.8 59 59-121 36-97 (489)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.3e-26 Score=172.34 Aligned_cols=118 Identities=30% Similarity=0.509 Sum_probs=101.5
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|.+|||.||++|.||.+||..+.... . + ....-........+++++|||||++..++|++|++.|+.||
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp~e~----n---~----~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKPSEM----N---G----KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred HHHhCCeeeccceeeccccccCcccc----C---C----CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 57899999999999999999886221 0 0 00111223455678899999999999999999999999999
Q ss_pred CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.|.+|++.+++||+||.|++.|+|.+||.++|+.+|.|+.|+|.|.|..
T Consensus 190 ~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 190 PIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 9999999999999999999999999999999999999999999999854
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.84 E-value=4.6e-20 Score=147.62 Aligned_cols=102 Identities=27% Similarity=0.530 Sum_probs=89.2
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|++|||.+|.+++|+|.++.+.... ...++|||+|||.++++++|+++|++||
T Consensus 166 i~~LnG~~l~gr~i~V~~a~p~~~~---------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 166 IKNLNGITVRNKRLKVSYARPGGES---------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred HHHcCCCccCCceeeeecccccccc---------------------------cccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 4679999999999999998654211 1356899999999999999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeecCCC
Q 030481 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a~~~ 129 (176)
.|..++|+.+ |+||||+|.+.++|++||+.||+..+.+ ++|+|.+++..
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999876 4899999999999999999999999876 78999999753
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=8.9e-19 Score=124.12 Aligned_cols=80 Identities=28% Similarity=0.588 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
...+++|||+||+.+++|++|+++|++||.|.++.++.+ ++||||+|.+.++|++|++.|+++.|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999999864 69999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986643
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=1.3e-18 Score=146.74 Aligned_cols=117 Identities=22% Similarity=0.399 Sum_probs=94.0
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|++|||..|+||.|+|+++........ ............++|||+||+.++++++|+++|+.||
T Consensus 166 i~~lnG~~i~GR~IkV~rp~~~p~a~~----------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG 229 (612)
T TIGR01645 166 LEQMNGQMLGGRNIKVGRPSNMPQAQP----------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 229 (612)
T ss_pred HHhcCCeEEecceeeeccccccccccc----------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcC
Confidence 467999999999999997543321100 0000111223457999999999999999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCCCC
Q 030481 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSGAY 133 (176)
Q Consensus 81 ~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (176)
.|.++++.++ ||||||+|++.++|.+||+.||+..|+|+.|+|.++...+...
T Consensus 230 ~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 230 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 9999999864 7999999999999999999999999999999999998665443
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=3.8e-18 Score=137.24 Aligned_cols=77 Identities=31% Similarity=0.536 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
.+.+|||+|||.++++++|+++|++||.|.+++|+.+ ||||||+|.+.++|.+||..|||..|+||.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 3457999999999999999999999999999999875 7999999999999999999999999999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 664
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.1e-18 Score=138.85 Aligned_cols=104 Identities=24% Similarity=0.439 Sum_probs=92.6
Q ss_pred ccCC-cccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 3 EMNG-VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 3 ~mng-~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
.|+| +.|+|..|.|.||.+.... +.........|||.||+.++|++.|+++|++||.
T Consensus 228 l~~g~~klwgn~~tVdWAep~~e~----------------------ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEPEEEP----------------------DEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred ccCCceeecCCcceeeccCcccCC----------------------ChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 3566 6699999999999988655 3445667889999999999999999999999999
Q ss_pred eEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 82 IASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 82 i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
|++|+.+ |.||||+|.+.++|.+|++.+||+.|+|..|.|.+||+..
T Consensus 286 veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 286 VERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred eEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 9999888 5699999999999999999999999999999999999653
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.77 E-value=6e-18 Score=142.38 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=87.7
Q ss_pred cccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccc--CCeEE
Q 030481 7 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIAS 84 (176)
Q Consensus 7 ~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~--G~i~~ 84 (176)
..|+|+.|.|+|+.++.... .......++|||+||+.++++++|+++|++| |.|++
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----------------------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----------------------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred eEecCceEEEEeeccccccc----------------------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 46899999999997664321 1122346799999999999999999999999 99999
Q ss_pred EEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCCC
Q 030481 85 VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSGA 132 (176)
Q Consensus 85 i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~~ 132 (176)
|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|+|+++....
T Consensus 265 V~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 265 VKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred EEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9877 679999999999999999999999999999999999876443
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.73 E-value=2.5e-17 Score=140.14 Aligned_cols=119 Identities=29% Similarity=0.487 Sum_probs=94.4
Q ss_pred CCccCCcccC----CcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhh
Q 030481 1 MTEMNGVYCS----SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF 76 (176)
Q Consensus 1 i~~mng~~l~----gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F 76 (176)
|++|||.+|. |+.|.|.++..+..+........ .............++|||+||+.++++++|+++|
T Consensus 236 v~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~---------~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 236 VEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKF---------EELQQERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred HHHhCCcEecccccceeeEeecccChhhhHHHHHhhH---------HhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 3578999999 99999999887755421100000 0000011123456789999999999999999999
Q ss_pred cccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 77 SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 77 ~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
++||.|.+|+++.+ +|||||+|.+.++|.+|++.|||..++|++|+|.+|..
T Consensus 307 ~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 307 SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 99999999999875 69999999999999999999999999999999999874
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=6.6e-17 Score=124.54 Aligned_cols=80 Identities=28% Similarity=0.491 Sum_probs=73.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
+......++|+|+|||+...|.||+..|++||.|.+|.|+.+ |||+||+|++.++|++|-++|||..++||+|.|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 334456789999999999999999999999999999999875 8999999999999999999999999999999999
Q ss_pred ecCC
Q 030481 125 YGNQ 128 (176)
Q Consensus 125 ~a~~ 128 (176)
.|+.
T Consensus 170 ~ATa 173 (376)
T KOG0125|consen 170 NATA 173 (376)
T ss_pred ccch
Confidence 8863
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.69 E-value=2.4e-16 Score=131.79 Aligned_cols=129 Identities=20% Similarity=0.379 Sum_probs=93.0
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCC--CCCC--------CCCCCCCCCCCCCCCCeEEEcCCCCCCCHH
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGG--YASN--------GAPGQGPQSEGDSSNTTIFVGGLDPNVTDE 70 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~ 70 (176)
|+.|||..|.|++|+|.++........+......+. .... ............+++.+|||+|||..++++
T Consensus 330 i~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee 409 (481)
T TIGR01649 330 LTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEE 409 (481)
T ss_pred HHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHH
Confidence 457999999999999999866533211110000000 0000 000000011123567899999999999999
Q ss_pred HHHHhhcccCC--eEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeE------eEEeecCCC
Q 030481 71 DLRQPFSQYGE--IASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQS------FRADYGNQW 129 (176)
Q Consensus 71 ~l~~~F~~~G~--i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~------l~v~~a~~~ 129 (176)
+|+++|++||. |..+++... +++|||+|++.++|.+|+..||++.|.++. |+|+|+++.
T Consensus 410 ~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 410 DLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999997 888888654 589999999999999999999999999985 999999864
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=1.4e-16 Score=127.68 Aligned_cols=78 Identities=26% Similarity=0.505 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
......++|||++||.++++++|+++|+.||.|.+|+|+.+ ++||||+|.++++|++||+.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34567889999999999999999999999999999999865 589999999999999999999999999999999
Q ss_pred eecC
Q 030481 124 DYGN 127 (176)
Q Consensus 124 ~~a~ 127 (176)
.|++
T Consensus 182 ~~a~ 185 (346)
T TIGR01659 182 SYAR 185 (346)
T ss_pred eccc
Confidence 9986
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.69 E-value=5.7e-16 Score=129.59 Aligned_cols=78 Identities=26% Similarity=0.368 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 52 ~~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
...+++|||+||++ .+++++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|+..|||..|.|+.|+|.+++..
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 34678999999998 6999999999999999999999887 699999999999999999999999999999999998754
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.7e-16 Score=98.41 Aligned_cols=65 Identities=48% Similarity=0.836 Sum_probs=61.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 58 l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
|||+|||.++++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988874 68999999999999999999999999999986
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=8e-17 Score=108.78 Aligned_cols=91 Identities=32% Similarity=0.568 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
-..+++|||+||+..++|++|.++|+..|.|..|.+-.+ .|||||+|.+.++|+.|++.+++..|+.+.|+++|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 356899999999999999999999999999999977666 39999999999999999999999999999999999
Q ss_pred cC------CCCCCCCCCCCCCCC
Q 030481 126 GN------QWSGAYYGGQVYDGY 142 (176)
Q Consensus 126 a~------~~~~~~~~~~~~~~~ 142 (176)
.- +++.+.+|++.++.+
T Consensus 113 D~GF~eGRQyGRG~sGGqVrde~ 135 (153)
T KOG0121|consen 113 DAGFVEGRQYGRGKSGGQVRDEY 135 (153)
T ss_pred cccchhhhhhcCCCCCCeechhh
Confidence 74 555556666665544
No 15
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=2.6e-16 Score=126.53 Aligned_cols=103 Identities=28% Similarity=0.575 Sum_probs=89.4
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|+.|||..|.|+.|+|.++.+.... ...++|||+|||..+++++|+.+|++||
T Consensus 62 i~~l~g~~l~g~~i~v~~a~~~~~~---------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G 114 (352)
T TIGR01661 62 VNSLNGLRLQNKTIKVSYARPSSDS---------------------------IKGANLYVSGLPKTMTQHELESIFSPFG 114 (352)
T ss_pred HhhcccEEECCeeEEEEeecccccc---------------------------cccceEEECCccccCCHHHHHHHHhccC
Confidence 4679999999999999998755322 2456899999999999999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeecCCCC
Q 030481 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSFRADYGNQWS 130 (176)
Q Consensus 81 ~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a~~~~ 130 (176)
.|..+.++.+ +|||||+|++.++|++|++.|||..+.| ++|+|.|+....
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999988764 6899999999999999999999999877 678999986543
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.68 E-value=8.9e-16 Score=129.11 Aligned_cols=127 Identities=14% Similarity=0.220 Sum_probs=91.6
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCC-CCC-CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASN-GAP-GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
+|||+.|.|+.|+|.+...................... ... ............++|||+|||..+++++|+++|+.||
T Consensus 241 ~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 58999999999999876544321100000000000000 000 0001111234568999999999999999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.|..+.++.+ +|||||+|.+.++|..||+.|+|..|.|+.|+|.++...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999988764 699999999999999999999999999999999998643
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=5.4e-16 Score=128.88 Aligned_cols=110 Identities=28% Similarity=0.525 Sum_probs=89.3
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i 82 (176)
+|||..|.|++|.|..+........... .......+..++|||+|||..+++++|+++|++||.|
T Consensus 149 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~---------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i 213 (457)
T TIGR01622 149 ALTGQMLLGRPIIVQSSQAEKNRAAKAA---------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI 213 (457)
T ss_pred HhCCCEECCeeeEEeecchhhhhhhhcc---------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Confidence 4899999999999998755433211000 0000112237899999999999999999999999999
Q ss_pred EEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 83 ~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
..|.++.+ +|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+.
T Consensus 214 ~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 214 EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 99998853 6899999999999999999999999999999999976
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=6.3e-16 Score=114.41 Aligned_cols=75 Identities=35% Similarity=0.558 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
+..-++||||+|+|.+..+.|+++|++||+|.+..|+.| |||+||+|.|.++|.+|++. .+-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 445689999999999999999999999999999999876 69999999999999999984 66789999999988
Q ss_pred cC
Q 030481 126 GN 127 (176)
Q Consensus 126 a~ 127 (176)
|.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 75
No 19
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=5.9e-16 Score=109.83 Aligned_cols=77 Identities=31% Similarity=0.570 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
-.++|||+||+..+++.+|+.+|..||.|..|-|... -|||||+|++..+|+.|+..|+|..|.|..|+|++++...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4789999999999999999999999999998866655 6999999999999999999999999999999999998554
No 20
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.6e-15 Score=112.77 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+.++|-|.||+.+++|++|+++|..||.|.++.|.++ ||||||+|.+.++|.+||..|||+-+++-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 4457889999999999999999999999999999999886 7999999999999999999999999999999999
Q ss_pred ecCCC
Q 030481 125 YGNQW 129 (176)
Q Consensus 125 ~a~~~ 129 (176)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99975
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.8e-15 Score=115.09 Aligned_cols=74 Identities=27% Similarity=0.397 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.++|||+||++.+++++|+++|+.||.|.+|.|..+ ++||||+|.+.++|+.|+. |+|..|.|+.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999999999999999999999999999876 6899999999999999996 9999999999999998755
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.62 E-value=8.3e-16 Score=116.88 Aligned_cols=98 Identities=23% Similarity=0.472 Sum_probs=90.7
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|+.|+|-.|+|..|.|+.++.++. .+++|+|+||.+.++..+|+..|++||
T Consensus 53 irNLhgYtLhg~nInVeaSksKsk-----------------------------~stkl~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 53 IRNLHGYTLHGVNINVEASKSKSK-----------------------------ASTKLHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred HhhcccceecceEEEEEeccccCC-----------------------------CccccccCCCCccccCHHHhhhhcccC
Confidence 456999999999999998887732 578999999999999999999999999
Q ss_pred CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.|.+|+|+ |+++||+|+-.++|..|++.|++.++.|++++|+.++.+
T Consensus 104 pviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 104 PVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred Cceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 99999999 789999999999999999999999999999999998754
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=4e-15 Score=126.71 Aligned_cols=105 Identities=26% Similarity=0.525 Sum_probs=90.2
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|++|||..++|+.|+|.....+..+. .......++|||+||+.++++++|+++|+.||
T Consensus 146 i~~lng~~~~~~~i~v~~~~~~~~~~----------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG 203 (562)
T TIGR01628 146 IQKVNGMLLNDKEVYVGRFIKKHERE----------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG 203 (562)
T ss_pred HHHhcccEecCceEEEeccccccccc----------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcC
Confidence 45789999999999998776654431 11223457899999999999999999999999
Q ss_pred CeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeC----CeEeEEeecC
Q 030481 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG----KQSFRADYGN 127 (176)
Q Consensus 81 ~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~----g~~l~v~~a~ 127 (176)
.|..+.++.+ +|||||+|.+.++|.+|++.|++..+. |+.|.|.++.
T Consensus 204 ~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~ 259 (562)
T TIGR01628 204 EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQ 259 (562)
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeeccc
Confidence 9999998864 689999999999999999999999999 9999998875
No 24
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=6.3e-15 Score=105.62 Aligned_cols=76 Identities=21% Similarity=0.445 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
..++|||+|||.++.+.+|+++|.+||.|.+|.+... -.||||+|++..+|+.||..-+|..++|.+|+|+|+...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 5789999999999999999999999999999988764 369999999999999999999999999999999998643
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5.5e-15 Score=120.60 Aligned_cols=127 Identities=21% Similarity=0.313 Sum_probs=94.9
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
++.++..++||.|+|..|..+..............-.+.... .......+.+..+|.|.|||+.+.+.+|+.+|+.||.
T Consensus 65 ~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~-~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~ 143 (678)
T KOG0127|consen 65 AETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQK-RPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK 143 (678)
T ss_pred HHhhcCcccceecccccccccccchhcccccchhhhcccccC-CcchhhccCccceEEeecCCcccCcHHHHHHHhhcce
Confidence 456778899999999999887554322111111110000000 0000111233789999999999999999999999999
Q ss_pred eEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 82 IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 82 i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
|.+|.|++. .|||||.|....+|..|++.+|++.|+||+|-|+||-++
T Consensus 144 V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 144 VVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred EEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 999999874 599999999999999999999999999999999999655
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=1.2e-14 Score=90.49 Aligned_cols=65 Identities=37% Similarity=0.728 Sum_probs=59.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 58 l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
|||+|||+++++++|.++|+.+|.|..+.+..+ +++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999876 59999999999999999999999999999985
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=8.9e-15 Score=123.37 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeC-CeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG-KQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~ 125 (176)
....++|||+|||.+++|++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 445799999999999999999999999999999999864 799999999999999999999999985 78887776
Q ss_pred cC
Q 030481 126 GN 127 (176)
Q Consensus 126 a~ 127 (176)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 64
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.57 E-value=1.6e-14 Score=116.95 Aligned_cols=75 Identities=21% Similarity=0.408 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC--CcEEEEEecCH--HHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANR--ENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~--rg~afV~f~~~--~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
....+||||||++.+++++|+.+|..||.|..|.|++. ||||||+|.+. .++.+||..|||..+.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45689999999999999999999999999999999975 89999999987 78999999999999999999999997
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=7.6e-15 Score=106.84 Aligned_cols=77 Identities=30% Similarity=0.591 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
+...-..|-|-||...++.++|+.+|++||.|-+|.|..| +|||||.|.+..+|+.|++.|+|.+|+|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3445678999999999999999999999999999999886 6999999999999999999999999999999999
Q ss_pred ecC
Q 030481 125 YGN 127 (176)
Q Consensus 125 ~a~ 127 (176)
+|+
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 986
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.56 E-value=3.8e-15 Score=106.36 Aligned_cols=103 Identities=29% Similarity=0.509 Sum_probs=87.6
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+-||.+.|.||+|+|+.+...... ...+.++||+||.+.++|..|.++|+.||.
T Consensus 69 kiln~VkLYgrpIrv~kas~~~~n--------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 69 KILNMVKLYGRPIRVNKASAHQKN--------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred HHHHHHHhcCceeEEEeccccccc--------------------------ccccccccccccCcchhHHHHHHHHHhccc
Confidence 457889999999999999833222 234589999999999999999999999998
Q ss_pred eEEE-EEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 82 IASV-KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 82 i~~i-~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
+... +++++ ++|+||.|.+.+++.+|+.++||..+.+++++|.++..+.
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 7553 44443 6899999999999999999999999999999999997664
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.4e-14 Score=114.37 Aligned_cols=83 Identities=24% Similarity=0.429 Sum_probs=75.0
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeC-
Q 030481 45 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG- 117 (176)
Q Consensus 45 ~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~- 117 (176)
..+.....+..+.||||.||.++.|++|..+|++.|+|-+++||.+ ||||||+|++.+.|++||+.||+++|.
T Consensus 73 P~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 73 PGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 3366666688999999999999999999999999999999999986 899999999999999999999999985
Q ss_pred CeEeEEeecC
Q 030481 118 KQSFRADYGN 127 (176)
Q Consensus 118 g~~l~v~~a~ 127 (176)
|+.|.|+.+-
T Consensus 153 GK~igvc~Sv 162 (506)
T KOG0117|consen 153 GKLLGVCVSV 162 (506)
T ss_pred CCEeEEEEee
Confidence 8988887653
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=4.2e-14 Score=106.13 Aligned_cols=75 Identities=28% Similarity=0.337 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
...+|||+||++.+++++|+++|+.||.|.+|+|.++ +++|||+|.++++++.|+. |+|..|.++.|.|.-...+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 5689999999999999999999999999999999986 4799999999999999996 9999999999999876543
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=7.5e-14 Score=85.94 Aligned_cols=68 Identities=50% Similarity=0.899 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCC----cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~r----g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
+|||+|||..+++++|+++|.+||.+..+.+..++ ++|||+|.+.++|++|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 999999999999999999999999999999874
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=3.2e-14 Score=120.35 Aligned_cols=75 Identities=24% Similarity=0.550 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
...++|||+||+.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.|||..|+||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999764 799999999999999999999999999999999875
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.1e-14 Score=109.38 Aligned_cols=102 Identities=29% Similarity=0.578 Sum_probs=89.4
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|..|||-.|-.|.|+|.+|.+.+.. .....|||.+||..++..+|+.+|++||
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~---------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fG 152 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDS---------------------------IKDANLYVSGLPKTMTQKELEQIFSPFG 152 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhh---------------------------hcccceEEecCCccchHHHHHHHHHHhh
Confidence 4578999999999999999887654 2578999999999999999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeecCCC
Q 030481 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a~~~ 129 (176)
.|..-+|..| ||.+||.|+..++|+.||+.|||+.-.| .+|.|.||...
T Consensus 153 rIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 153 RIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred hhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 9877776654 8999999999999999999999998655 57999999744
No 36
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=9.6e-14 Score=90.64 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
...++.|||.|||.++|.++..++|.+||.|..|++-.. +|-|||.|++..+|.+|+++|+|..+.++-|.|-|-.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 446789999999999999999999999999999999765 7999999999999999999999999999999998754
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=1.1e-13 Score=116.53 Aligned_cols=128 Identities=19% Similarity=0.282 Sum_probs=88.3
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCC-CCCCCCCCCCCCCCCCCCCCeEEEcCCCCC--C--------CH
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGG-YASNGAPGQGPQSEGDSSNTTIFVGGLDPN--V--------TD 69 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~--~--------~~ 69 (176)
|+.|||+.|+|+.|.|.++................. .................++.+|+|.||... + ..
T Consensus 354 ~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~ 433 (509)
T TIGR01642 354 IAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIY 433 (509)
T ss_pred HHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHH
Confidence 457999999999999999875433211111000000 000000011111122345778999999642 1 12
Q ss_pred HHHHHhhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 70 EDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 70 ~~l~~~F~~~G~i~~i~~~~~---------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
++|+++|++||.|..|.|++. +|++||+|.+.++|++|+..|||..|.|+.|.|.|...
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 678999999999999998753 48999999999999999999999999999999999753
No 38
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.4e-14 Score=115.27 Aligned_cols=77 Identities=31% Similarity=0.593 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCee-eCC--eEeEEe
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGK--QSFRAD 124 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~-~~g--~~l~v~ 124 (176)
.+.++|||+.|+..++|.+++++|++||.|++|.|+++ |||+||+|++.+-|..||+.|||.. ++| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 46889999999999999999999999999999999986 8999999999999999999999975 666 579999
Q ss_pred ecCCC
Q 030481 125 YGNQW 129 (176)
Q Consensus 125 ~a~~~ 129 (176)
||.+.
T Consensus 202 FADtq 206 (510)
T KOG0144|consen 202 FADTQ 206 (510)
T ss_pred ecccC
Confidence 99743
No 39
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.52 E-value=1.3e-13 Score=82.16 Aligned_cols=55 Identities=36% Similarity=0.670 Sum_probs=51.7
Q ss_pred HHHhhcccCCeEEEEEeCCC-cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 72 LRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 72 l~~~F~~~G~i~~i~~~~~r-g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
|.++|++||.|.++.+..++ ++|||+|.+.++|.+|++.||+..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999887 99999999999999999999999999999999986
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7.2e-14 Score=105.47 Aligned_cols=76 Identities=36% Similarity=0.791 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
...|||+.|..+++-++|++.|.+||+|.+++|++| |||+||.|-..++|++||..|||.-|.+|.||-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 568999999999999999999999999999999986 79999999999999999999999999999999999986
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 41
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.4e-13 Score=105.04 Aligned_cols=77 Identities=22% Similarity=0.467 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+-++|||+-|+.+++|.+|+..|+.||.|..|.|+.+ +|||||+|+++.+...|.+..+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3467899999999999999999999999999999999986 7999999999999999999999999999999999
Q ss_pred ecC
Q 030481 125 YGN 127 (176)
Q Consensus 125 ~a~ 127 (176)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 875
No 42
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.1e-13 Score=111.61 Aligned_cols=95 Identities=29% Similarity=0.514 Sum_probs=85.9
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|++||-..|.|++|+|-|+.... ..|||.||+++++..+|.++|+.||
T Consensus 54 ~~~~n~~~~~~~~~rim~s~rd~--------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 54 LDTMNFDVLKGKPIRIMWSQRDP--------------------------------SLVFIKNLDESIDNKSLYDTFSEFG 101 (369)
T ss_pred HHHcCCcccCCcEEEeehhccCC--------------------------------ceeeecCCCcccCcHHHHHHHHhhc
Confidence 56899999999999999986541 1199999999999999999999999
Q ss_pred CeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 81 EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 81 ~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
.|.+|++..+ +|+ ||+|+++++|.+|++.+||..+.+++|.|.....
T Consensus 102 ~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 102 NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 9999999886 789 9999999999999999999999999999976653
No 43
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=5.6e-15 Score=105.54 Aligned_cols=75 Identities=31% Similarity=0.519 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.++.-|||||||.++||.||..+|++||+|..|.+++| +||||++|++..+...|+..|||..|.||.|+|+.-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46789999999999999999999999999999999986 699999999999999999999999999999999865
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=8.3e-14 Score=106.08 Aligned_cols=73 Identities=29% Similarity=0.565 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
.+|||+|||..+++.+|+.+|++||+|.+|+|+ |.|+||+.++...++.||..|||.+|+|..|.|+-+|.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 579999999999999999999999999999999 7799999999999999999999999999999999998763
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=7e-13 Score=108.46 Aligned_cols=75 Identities=25% Similarity=0.502 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhh-----CC-eeeCCeE
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL-----NG-TVIGKQS 120 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l-----~g-~~~~g~~ 120 (176)
....+|||.|||+++++++|..+|++||+|..+.++.+ +|.|||.|.+..+|..||+.. .| ..|+||.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 33489999999999999999999999999999888764 699999999999999999866 33 6789999
Q ss_pred eEEeecC
Q 030481 121 FRADYGN 127 (176)
Q Consensus 121 l~v~~a~ 127 (176)
|+|..|-
T Consensus 370 Lkv~~Av 376 (678)
T KOG0127|consen 370 LKVTLAV 376 (678)
T ss_pred Eeeeecc
Confidence 9999885
No 46
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=4.3e-13 Score=104.31 Aligned_cols=88 Identities=39% Similarity=0.624 Sum_probs=76.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhh-CCeeeCCeEeEEee
Q 030481 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSFRADY 125 (176)
Q Consensus 47 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l-~g~~~~g~~l~v~~ 125 (176)
..+..+....+|||++|...++|.+|+++|.+||+|+.+.+...++||||+|.+.++|+.|.+.+ +...|+|++|+|.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 45556777889999999999999999999999999999999999999999999999999998654 55568999999999
Q ss_pred cCCCCCCCC
Q 030481 126 GNQWSGAYY 134 (176)
Q Consensus 126 a~~~~~~~~ 134 (176)
+.++.....
T Consensus 300 g~~~~~a~~ 308 (377)
T KOG0153|consen 300 GRPKQAAQG 308 (377)
T ss_pred CCCcccccC
Confidence 998543333
No 47
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.9e-14 Score=102.54 Aligned_cols=77 Identities=30% Similarity=0.626 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
...++||||+|..+++|..|...|-.||.|.+|.++.| |||+||+|+..++|..||..||+.+|-||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35789999999999999999999999999999999875 899999999999999999999999999999999999
Q ss_pred CCC
Q 030481 127 NQW 129 (176)
Q Consensus 127 ~~~ 129 (176)
++.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 865
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1.3e-12 Score=80.81 Aligned_cols=69 Identities=48% Similarity=0.889 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
+|+|+|||..+++++|+++|+.+|.|..+.+..+ +++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999988875 58999999999999999999999999999999875
No 49
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.43 E-value=1.1e-12 Score=109.10 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+||. |+|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3455789999999999999999999999999999999875 6999999999999999997 89999999999998
Q ss_pred ecCC
Q 030481 125 YGNQ 128 (176)
Q Consensus 125 ~a~~ 128 (176)
++..
T Consensus 164 ~~~~ 167 (457)
T TIGR01622 164 SSQA 167 (457)
T ss_pred ecch
Confidence 8753
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.8e-14 Score=110.47 Aligned_cols=111 Identities=23% Similarity=0.458 Sum_probs=89.9
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
++.|||..|+||.|+|++...-.... +...........-.+|||..+..+++|+||+.+|+.||
T Consensus 172 lEqMNg~mlGGRNiKVgrPsNmpQAQ----------------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 172 LEQMNGQMLGGRNIKVGRPSNMPQAQ----------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred HHHhccccccCccccccCCCCCcccc----------------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc
Confidence 47899999999999999765432211 00000111233567999999999999999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 81 ~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+|..|.+-++ |||+||+|.+..+...||..||-..|.|.-|+|-.+-
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 9999999764 8999999999999999999999999999999987664
No 51
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6.2e-13 Score=90.86 Aligned_cols=81 Identities=27% Similarity=0.496 Sum_probs=73.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
++.......|||.++....+|++|.+.|..||+|..|.+..+ |||++|+|++.+.|++|+..+||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 344556789999999999999999999999999999988776 69999999999999999999999999999999
Q ss_pred EeecCCC
Q 030481 123 ADYGNQW 129 (176)
Q Consensus 123 v~~a~~~ 129 (176)
|.|+--+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9998644
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.7e-12 Score=97.71 Aligned_cols=80 Identities=35% Similarity=0.583 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCC------cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~r------g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.+...+.|.|.-||..+|+++|+.+|...|+|+.|++++|| ||+||.|.++++|++|+..|||..|..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34556789999999999999999999999999999999984 899999999999999999999999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
||.+.+
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 998764
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=2.2e-12 Score=98.78 Aligned_cols=73 Identities=37% Similarity=0.694 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
.++|||+||+.++++++|.++|.+||.|..+.+..+ +|+|||+|.+.++|..|++.+++..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999999999999999999999999988775 5999999999999999999999999999999999964
No 54
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=2.6e-12 Score=78.64 Aligned_cols=65 Identities=43% Similarity=0.781 Sum_probs=60.2
Q ss_pred EcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 60 v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
|+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988775 4799999999999999999999999999999874
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.3e-12 Score=104.19 Aligned_cols=79 Identities=28% Similarity=0.603 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCee-eC--CeEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTV-IG--KQSF 121 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~-~~--g~~l 121 (176)
.+.+.-++||+.+|..++|+||+++|++||.|.+|.|++| +|||||+|.+.++|.+|+..||+.. |- .+.|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3466779999999999999999999999999999999997 6999999999999999999998876 54 4789
Q ss_pred EEeecCCC
Q 030481 122 RADYGNQW 129 (176)
Q Consensus 122 ~v~~a~~~ 129 (176)
.|+||...
T Consensus 110 qvk~Ad~E 117 (510)
T KOG0144|consen 110 QVKYADGE 117 (510)
T ss_pred eecccchh
Confidence 99998743
No 56
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=5.2e-13 Score=111.94 Aligned_cols=111 Identities=20% Similarity=0.412 Sum_probs=92.4
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
++.|+|..|+|+.|.|+++..+.... ...........++|+|.|||+..+-.+++.+|..||
T Consensus 577 ~k~lqgtvldGH~l~lk~S~~k~~~~------------------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 577 LKALQGTVLDGHKLELKISENKPAST------------------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred HHHhcCceecCceEEEEeccCccccc------------------cccccccccccceeeeeccchHHHHHHHHHHHhccc
Confidence 35799999999999999998332211 001112223378999999999999999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.+..|+|+.. +|||||+|-+...|.+|+.+|....|-||+|.++||+..
T Consensus 639 qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 639 QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 9999999863 899999999999999999999988899999999999854
No 57
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2.9e-12 Score=104.72 Aligned_cols=74 Identities=31% Similarity=0.596 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
+.|||||+|.++++++|.++|+..|.|..++++.| +||+|++|.+.+.|.+|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999886 699999999999999999999999999999999999754
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3e-12 Score=96.76 Aligned_cols=75 Identities=28% Similarity=0.654 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCee-eCC--eEeEEee
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGK--QSFRADY 125 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~-~~g--~~l~v~~ 125 (176)
+.++||||.|...-.|+|++++|..||.|++|.+.++ |||+||.|.+..+|..||..|+|.. +-| ..|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6789999999999999999999999999999999874 8999999999999999999999976 433 6799999
Q ss_pred cCC
Q 030481 126 GNQ 128 (176)
Q Consensus 126 a~~ 128 (176)
+..
T Consensus 98 ADT 100 (371)
T KOG0146|consen 98 ADT 100 (371)
T ss_pred ccc
Confidence 973
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=2.6e-12 Score=91.98 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
....+|||+||+..++++.|.++|-+.|+|..+.+.++ +||||++|.++++|+=|++-||...|-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35789999999999999999999999999999999886 699999999999999999999988999999999998
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=7.2e-12 Score=92.57 Aligned_cols=78 Identities=28% Similarity=0.503 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----hhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQ----PFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~----~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.++.+|||.||++.+..++|++ +|++||.|.+|...+. ||-|||.|.+.+.|..|+..|+|..+-|+.++|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3455999999999999999888 9999999999987754 89999999999999999999999999999999999
Q ss_pred cCCCC
Q 030481 126 GNQWS 130 (176)
Q Consensus 126 a~~~~ 130 (176)
|+..+
T Consensus 87 A~s~s 91 (221)
T KOG4206|consen 87 AKSDS 91 (221)
T ss_pred ccCcc
Confidence 98654
No 61
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.31 E-value=5.8e-12 Score=106.66 Aligned_cols=73 Identities=33% Similarity=0.701 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+++||||+|+..+++.||..+|+.||+|.+|.++..|+||||+.....+|.+|+..|.+..+.++.|+|.||-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999985
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.29 E-value=3.8e-12 Score=104.24 Aligned_cols=112 Identities=24% Similarity=0.410 Sum_probs=86.5
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i 82 (176)
.|.|..+.|.+|.|......+.+..... . ....-....+-.+|||+||..++++++|+.+|+.||.|
T Consensus 239 aLsGqrllg~pv~vq~sEaeknr~a~~s-----------~--a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~I 305 (549)
T KOG0147|consen 239 ALSGQRLLGVPVIVQLSEAEKNRAANAS-----------P--ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKI 305 (549)
T ss_pred hhcCCcccCceeEecccHHHHHHHHhcc-----------c--cccccccccchhhhhhcccccCchHHHHhhhccCcccc
Confidence 4789999999999987655443310000 0 00000011123339999999999999999999999999
Q ss_pred EEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 83 ~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
..|.++++ +||+||+|.+.++|.+|++.|||.+|-|+.|+|..-.
T Consensus 306 e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 306 ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred eeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 99998876 7999999999999999999999999999999987654
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.26 E-value=2.1e-11 Score=95.81 Aligned_cols=101 Identities=24% Similarity=0.370 Sum_probs=85.3
Q ss_pred cccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEE
Q 030481 7 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK 86 (176)
Q Consensus 7 ~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~ 86 (176)
..|+||.|.+..|.++...... .......+|||++||.++++++|++.|++||.|..+.
T Consensus 70 h~~dgr~ve~k~av~r~~~~~~---------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~ 128 (311)
T KOG4205|consen 70 HKLDGRSVEPKRAVSREDQTKV---------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV 128 (311)
T ss_pred cccCCccccceeccCccccccc---------------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeE
Confidence 4588999999999888655311 1112577999999999999999999999999999998
Q ss_pred EeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 87 IPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 87 ~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
++.| ++|+||.|++++++++++. ..-+.|.++.+.|..|.++
T Consensus 129 ~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 129 IMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred EeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccch
Confidence 8875 7999999999999999987 5889999999999998754
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=5.9e-11 Score=95.20 Aligned_cols=75 Identities=23% Similarity=0.451 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhc-ccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~-~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
...+.+||.|+|.+..+.+|+++|. +.|+|+.|.+..| ||||.|+|+++|.+++|++.||.+.+.||+|+|.-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456699999999999999999996 5789999999876 799999999999999999999999999999999765
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
-
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 3
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3e-11 Score=94.55 Aligned_cols=83 Identities=29% Similarity=0.581 Sum_probs=75.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCC------cEEEEEecCHHHHHHHHHhhCCeeeCCeE
Q 030481 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQS 120 (176)
Q Consensus 47 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~r------g~afV~f~~~~~a~~ai~~l~g~~~~g~~ 120 (176)
++....++...|||..|.+.+++++|.-+|+.||.|..|.+++++ .||||+|++.+++++|.-.|++..|+.++
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 344455778899999999999999999999999999999999873 69999999999999999999999999999
Q ss_pred eEEeecCCC
Q 030481 121 FRADYGNQW 129 (176)
Q Consensus 121 l~v~~a~~~ 129 (176)
|+|.|+...
T Consensus 311 IHVDFSQSV 319 (479)
T KOG0415|consen 311 IHVDFSQSV 319 (479)
T ss_pred EEeehhhhh
Confidence 999998643
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=1.6e-10 Score=85.53 Aligned_cols=127 Identities=20% Similarity=0.287 Sum_probs=96.6
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCcccccc-----CC-----CC---C--CCCC--------CCCCCCCCCCCCCCCe
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYS-----SQ-----GG---Y--ASNG--------APGQGPQSEGDSSNTT 57 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~-----~~-----~~---~--~~~~--------~~~~~~~~~~~~~~~~ 57 (176)
+++|+|+.+.||+++|.+|..+.....+.+.. .+ .. . ..++ ..+........+++..
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~i 148 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNI 148 (221)
T ss_pred HHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceE
Confidence 35799999999999999999887765442211 00 00 0 0000 0000011334567889
Q ss_pred EEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeC-CeEeEEeecC
Q 030481 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIG-KQSFRADYGN 127 (176)
Q Consensus 58 l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~a~ 127 (176)
+|+.|||..++.+.|..+|++|....+++++.. ++.|||+|.+...+..|...+++..|. ...++|.+++
T Consensus 149 lf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 149 LFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999999999999998885 689999999999999999999999987 7889998875
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=99.20 E-value=1e-10 Score=72.83 Aligned_cols=56 Identities=30% Similarity=0.628 Sum_probs=48.6
Q ss_pred HHHHHHhhc----ccCCeEEEE-EeC--------CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 69 DEDLRQPFS----QYGEIASVK-IPV--------GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 69 ~~~l~~~F~----~~G~i~~i~-~~~--------~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
+++|+++|+ .||.|.++. +.. .+|++||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999884 332 27999999999999999999999999999999874
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=2.9e-11 Score=95.03 Aligned_cols=73 Identities=25% Similarity=0.569 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
-|+||||.+.+++.|+.|+..|..||.|.+|.+-.| |||+||+|+-.|.|..|++.|||..+.||.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 489999999999999999999999999999987553 8999999999999999999999999999999987543
No 69
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=4.5e-11 Score=90.48 Aligned_cols=82 Identities=28% Similarity=0.447 Sum_probs=75.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
....++.|.|||-.||.+..+.+|...|-.||.|.+.++..| |.|+||.|++..+++.||..|||..|.=++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 445678999999999999999999999999999998888775 68999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|....++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99988775
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.14 E-value=1.6e-10 Score=92.78 Aligned_cols=78 Identities=24% Similarity=0.334 Sum_probs=69.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.......|+|||.|||.++|+..|++-|..+|.|....|+.. +..+.|.|.++++|++|+..|++..|+||.|+|+|.
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 334567889999999999999999999999999999988653 555699999999999999999999999999999874
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.08 E-value=2.4e-10 Score=94.41 Aligned_cols=81 Identities=21% Similarity=0.444 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
..-.+.|||.+|...+...+|+.+|++||+|.-.+|+.+ +.|+||+..+.+.|.+||+.|+...|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 344678999999999999999999999999999888875 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 030481 126 GNQWSGA 132 (176)
Q Consensus 126 a~~~~~~ 132 (176)
++....+
T Consensus 482 aKNEp~G 488 (940)
T KOG4661|consen 482 AKNEPGG 488 (940)
T ss_pred cccCccc
Confidence 9866543
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.8e-10 Score=92.09 Aligned_cols=109 Identities=28% Similarity=0.523 Sum_probs=94.0
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|++|||..+.|++|.|.....+..+..... . ....-+.++|.+++.++++..|.++|..+|
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~~~~------------------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g 192 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREAPLG------------------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYG 192 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhccccc------------------c-hhhhhhhhheeccccccchHHHHHhhcccC
Confidence 568999999999999999998877642211 1 234567899999999999999999999999
Q ss_pred CeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 81 ~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
.|..+.++.+ ++|+||.|.+.++|..|++.|++..+.+..+.|.-+..
T Consensus 193 ~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 193 SITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred cceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999999874 79999999999999999999999999999988887754
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=9.5e-10 Score=92.70 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
++|||.||+++++.++|..+|...|.|..+.|... .||+||+|.+.++|++|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988764 299999999999999999999999999999999999
Q ss_pred CCCC
Q 030481 127 NQWS 130 (176)
Q Consensus 127 ~~~~ 130 (176)
...+
T Consensus 596 ~~k~ 599 (725)
T KOG0110|consen 596 ENKP 599 (725)
T ss_pred cCcc
Confidence 8443
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=6.8e-10 Score=82.68 Aligned_cols=73 Identities=23% Similarity=0.537 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
.+|||++|++.+.+.+|..+|..||.+.++.+. .+|+||+|++..+|..|+..|++.+|.+.++.|+|+....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 479999999999999999999999999999876 6888999999999999999999999999889999998654
No 75
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.97 E-value=4.5e-09 Score=83.83 Aligned_cols=128 Identities=18% Similarity=0.279 Sum_probs=94.4
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCC--------CCCCCCCCCCCCeEEEcCCCCCCCHHHH
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPG--------QGPQSEGDSSNTTIFVGGLDPNVTDEDL 72 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~v~~L~~~~~~~~l 72 (176)
++.|+|..|.|++|+|.+++...-........+++-..+....+ .....-..+++.++++.|+|.+++|++|
T Consensus 352 ~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~l 431 (492)
T KOG1190|consen 352 MEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDL 431 (492)
T ss_pred HHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHH
Confidence 35789999999999999998776554333333333332222211 1112223467889999999999999999
Q ss_pred HHhhcccCCe-EEEEE-eCCCcEEEEEecCHHHHHHHHHhhCCeeeC-CeEeEEeecCC
Q 030481 73 RQPFSQYGEI-ASVKI-PVGKGCGFVQFANRENAEEALHKLNGTVIG-KQSFRADYGNQ 128 (176)
Q Consensus 73 ~~~F~~~G~i-~~i~~-~~~rg~afV~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~a~~ 128 (176)
+..|.+-|.. ...+. ..++.++.+.+++.|.|..|+..++.+.+. +..|||+|++.
T Consensus 432 k~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 432 KNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred HHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999998754 44443 346899999999999999999999999986 56999999874
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.96 E-value=7.1e-09 Score=87.60 Aligned_cols=83 Identities=36% Similarity=0.705 Sum_probs=74.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC---------CCcEEEEEecCHHHHHHHHHhhCCeeeCC
Q 030481 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGK 118 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~---------~rg~afV~f~~~~~a~~ai~~l~g~~~~g 118 (176)
....++..+.|||+||++.++++.|...|..||+|..++++. ++.|+||.|-+..+|++|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 334467788999999999999999999999999999999875 26899999999999999999999999999
Q ss_pred eEeEEeecCCCC
Q 030481 119 QSFRADYGNQWS 130 (176)
Q Consensus 119 ~~l~v~~a~~~~ 130 (176)
..+++-|++..+
T Consensus 247 ~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 247 YEMKLGWGKAVP 258 (877)
T ss_pred eeeeeccccccc
Confidence 999999998554
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.96 E-value=8.3e-10 Score=86.89 Aligned_cols=75 Identities=29% Similarity=0.517 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+.++|||++|+++++++.|++.|.+||+|.+|.++++ |+|+||+|.+.+.+.+++. ..-+.|+|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 7899999999999999999999999999999999986 6999999999999988877 36678899988877776
Q ss_pred CC
Q 030481 128 QW 129 (176)
Q Consensus 128 ~~ 129 (176)
++
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 44
No 78
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.94 E-value=8.4e-09 Score=84.18 Aligned_cols=81 Identities=27% Similarity=0.391 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----C--cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K--GCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----r--g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.....|||.|||.++++++|+++|..||.|+...|... + .|+||+|.+.+++..||++ +-..|++++|.|+-.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 33455999999999999999999999999998877652 2 7999999999999999985 566789999999988
Q ss_pred CCCCCCCC
Q 030481 127 NQWSGAYY 134 (176)
Q Consensus 127 ~~~~~~~~ 134 (176)
+....+..
T Consensus 365 ~~~~~g~~ 372 (419)
T KOG0116|consen 365 RPGFRGNG 372 (419)
T ss_pred cccccccc
Confidence 76544433
No 79
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=4.6e-09 Score=76.81 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccc-CCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
....-++|..+|..+.+.++..+|.+| |.+..+++-++ ||||||+|++++.|.-|.+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445678999999999999999999998 67888888554 79999999999999999999999999999999998
Q ss_pred cCCC
Q 030481 126 GNQW 129 (176)
Q Consensus 126 a~~~ 129 (176)
=.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6544
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=5e-09 Score=78.08 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=86.8
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCC-CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccc
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~ 79 (176)
|..+|+.+|.|-.+.|.++.....-. +....+.... ...........+.+.|.+++..+.+.+|.++|.++
T Consensus 52 v~~l~~~~l~~e~~vve~~r~~~~~~--------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~ 123 (216)
T KOG0106|consen 52 VHDLDGKELCGERLVVEHARGKRRGR--------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA 123 (216)
T ss_pred cchhcCceecceeeeeeccccccccc--------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc
Confidence 45789999988888888887531110 0000001111 22223335567899999999999999999999999
Q ss_pred CCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 80 GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 80 G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
|.+....+ .++++||+|+..+++.+|++.|++..+.++.|.+...
T Consensus 124 g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 124 GEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred CCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 99955544 4789999999999999999999999999999999554
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.85 E-value=2.4e-08 Score=74.00 Aligned_cols=79 Identities=19% Similarity=0.359 Sum_probs=65.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC-C------CcEEEEEecCHHHHHHHHHhhCCeeeC---Ce
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-G------KGCGFVQFANRENAEEALHKLNGTVIG---KQ 119 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~-~------rg~afV~f~~~~~a~~ai~~l~g~~~~---g~ 119 (176)
......++|||.+||.++...+|..+|..|-.-+.+.+.. + +-++|++|.+...|..|+..|||..++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3445689999999999999999999999985444443332 2 369999999999999999999999986 67
Q ss_pred EeEEeecCC
Q 030481 120 SFRADYGNQ 128 (176)
Q Consensus 120 ~l~v~~a~~ 128 (176)
.|++++||.
T Consensus 109 tLhiElAKS 117 (284)
T KOG1457|consen 109 TLHIELAKS 117 (284)
T ss_pred eeEeeehhc
Confidence 899999974
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=5.1e-09 Score=86.28 Aligned_cols=72 Identities=31% Similarity=0.472 Sum_probs=66.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.+....+|+|-|||..+++++|+.+|+.||+|+.|+.-.. ++.+||+|-|..+|++|+++|++..+.|++|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3556789999999999999999999999999999876554 79999999999999999999999999999998
No 83
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.76 E-value=4.1e-08 Score=74.67 Aligned_cols=77 Identities=27% Similarity=0.490 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.+...++|+|.||+..++++||+++|+.||.+..+.+..+ .|.|-|.|...++|.+|++.+++..++|+.+++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3444588999999999999999999999998888877765 48999999999999999999999999999998877
Q ss_pred cC
Q 030481 126 GN 127 (176)
Q Consensus 126 a~ 127 (176)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 65
No 84
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=2.3e-08 Score=75.36 Aligned_cols=78 Identities=27% Similarity=0.516 Sum_probs=68.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
...+....+||.|.|..+++++.|-..|.+|-.....+++++ +||+||.|.+..++.+|++.++|+.++.|.|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 345567889999999999999999999999987766666665 79999999999999999999999999999998
Q ss_pred Eeec
Q 030481 123 ADYG 126 (176)
Q Consensus 123 v~~a 126 (176)
++-+
T Consensus 264 lRkS 267 (290)
T KOG0226|consen 264 LRKS 267 (290)
T ss_pred hhhh
Confidence 7654
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.70 E-value=7.5e-08 Score=75.47 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=70.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE--------EEEeCC-----CcEEEEEecCHHHHHHHHHhhCC
Q 030481 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG-----KGCGFVQFANRENAEEALHKLNG 113 (176)
Q Consensus 47 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g 113 (176)
+.......++.|||.|||.++|.+++.++|+++|-|.. |++.++ +|=|.++|-..++++.|+..|++
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence 34445566788999999999999999999999997643 555554 68899999999999999999999
Q ss_pred eeeCCeEeEEeecCC
Q 030481 114 TVIGKQSFRADYGNQ 128 (176)
Q Consensus 114 ~~~~g~~l~v~~a~~ 128 (176)
..|.|+.|+|+-|+-
T Consensus 206 ~~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 206 DELRGKKLRVERAKF 220 (382)
T ss_pred ccccCcEEEEehhhh
Confidence 999999999999873
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.58 E-value=2.6e-07 Score=73.92 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 55 NTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 55 ~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
++.|.|.||..+ +|.+.|..+|+-||.|.+|+|..+ +.-|.|.+.|...|+.|+++|+|+.|.|++|+|.++|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678899999865 999999999999999999999887 4689999999999999999999999999999999998
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=2.6e-08 Score=73.60 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCC----cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~r----g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
.+..++|||+|+...++|+-|.++|-+-|+|.++.|..++ .||||.|.++.++.-|++-+||..+.++++.+++-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3467899999999999999999999999999999887752 499999999999999999999999999998887654
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=2.8e-07 Score=76.51 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=82.6
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCC--C-CCH-------H
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDP--N-VTD-------E 70 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~--~-~~~-------~ 70 (176)
|..|||+-+++++|.|..|............ .+.................+...|.+.|+=. + .++ +
T Consensus 348 ~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlE 424 (500)
T KOG0120|consen 348 IAGLNGMQLGDKKLVVQRAIVGASNANVNFN---ISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILE 424 (500)
T ss_pred hcccchhhhcCceeEeehhhccchhccccCC---ccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHH
Confidence 4679999999999999998876544211111 0000001111111123334455555555421 1 222 4
Q ss_pred HHHHhhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 71 DLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 71 ~l~~~F~~~G~i~~i~~~~~---------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+++.-+++||.|..|.+.+. .|..||+|.+.+++++|+++|+|..+.+|.|...|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 55666789999999988764 4788999999999999999999999999999988854
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=6.1e-07 Score=59.01 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=59.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccc--CCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeC----CeEeEE
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG----KQSFRA 123 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~--G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~----g~~l~v 123 (176)
++|.|.|+|...+.++|.+++... |....+-++.| .|||||.|.+.+.+.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888653 56666666554 699999999999999999999999875 456678
Q ss_pred eecC
Q 030481 124 DYGN 127 (176)
Q Consensus 124 ~~a~ 127 (176)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8876
No 90
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=1.6e-07 Score=71.33 Aligned_cols=79 Identities=27% Similarity=0.446 Sum_probs=71.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.....+...+||+|+...++.++++.+|+.+|.|..+.+..+ ++|+||+|.+.+.++.++. |++..|.++.+.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 355677899999999999999999999999999987777765 6899999999999999999 999999999999
Q ss_pred EeecCC
Q 030481 123 ADYGNQ 128 (176)
Q Consensus 123 v~~a~~ 128 (176)
|.+..-
T Consensus 174 vt~~r~ 179 (231)
T KOG4209|consen 174 VTLKRT 179 (231)
T ss_pred eeeeee
Confidence 988763
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.52 E-value=5.4e-07 Score=57.02 Aligned_cols=68 Identities=24% Similarity=0.410 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCCHHHH----HHhhcccC-CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 56 TTIFVGGLDPNVTDEDL----RQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l----~~~F~~~G-~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
..|+|.|||.+.+...+ +.++..+| .|..|. .+-|+|.|.+.+.|++|.+.|+|..+-|++|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999999888655 45556775 677662 6889999999999999999999999999999999984
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.51 E-value=2.4e-06 Score=67.92 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhcccCCeEEEEEeCCC-cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~i~~~~~r-g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
...+.+.+.|-+|... ++.+.|..+|..||.|++|++++.+ |-|.|+..|..+.++|+..||+..+-|.+|.|+++++
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 3456788999999875 7788999999999999999999875 8999999999999999999999999999999999986
Q ss_pred C
Q 030481 129 W 129 (176)
Q Consensus 129 ~ 129 (176)
.
T Consensus 363 ~ 363 (494)
T KOG1456|consen 363 N 363 (494)
T ss_pred c
Confidence 5
No 93
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.48 E-value=2.6e-06 Score=66.97 Aligned_cols=126 Identities=14% Similarity=0.231 Sum_probs=84.2
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCC-----------CCCCCCCCCCCCCCCCCCCeEEEcCCCC----C
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY-----------ASNGAPGQGPQSEGDSSNTTIFVGGLDP----N 66 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~v~~L~~----~ 66 (176)
+.|++..|.|+.|+|.+|+-.-.-.........+.. ....-.+...........++|.+.|+=. .
T Consensus 201 ~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~ 280 (382)
T KOG1548|consen 201 KILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFE 280 (382)
T ss_pred HHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhc
Confidence 568999999999999998744221100000000000 0000011112334455678888988832 2
Q ss_pred CC-------HHHHHHhhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 67 VT-------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 67 ~~-------~~~l~~~F~~~G~i~~i~~~~--~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
.+ .++|++-+++||.|..|.|.- ..|.+-|.|.+.+.|..||+.|+|..++||.|......
T Consensus 281 ~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 281 KNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 23 256667789999999998763 36999999999999999999999999999999877643
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.46 E-value=5.1e-06 Score=66.07 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCCCCCeEEEcCCC--CCCCHHHHHHhhcccCCeEEEEEeCCCc-EEEEEecCHHHHHHHHHhhCCeeeC--CeEeEEee
Q 030481 51 GDSSNTTIFVGGLD--PNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHKLNGTVIG--KQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~--~~~~~~~l~~~F~~~G~i~~i~~~~~rg-~afV~f~~~~~a~~ai~~l~g~~~~--g~~l~v~~ 125 (176)
....++.|.+.=|. ..+|-+.|..++...|+|.+|.|++..| -|.|+|++.+.|++|...|||..|- ...|+|+|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 34455666655444 4588899999999999999999887654 7999999999999999999999863 46899999
Q ss_pred cCC
Q 030481 126 GNQ 128 (176)
Q Consensus 126 a~~ 128 (176)
||+
T Consensus 196 AkP 198 (494)
T KOG1456|consen 196 AKP 198 (494)
T ss_pred cCc
Confidence 984
No 95
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.46 E-value=6.3e-07 Score=74.07 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=52.0
Q ss_pred HHHHHhhcccCCeEEEEEeCCC-cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 70 EDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 70 ~~l~~~F~~~G~i~~i~~~~~r-g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
+++.+.+++||.|..|.+.++. ||.||.|.+.+.|..|+..|||..+.|+.|.+.|=
T Consensus 468 edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 5667777999999999998875 99999999999999999999999999999998874
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.42 E-value=5.9e-07 Score=60.20 Aligned_cols=69 Identities=32% Similarity=0.539 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCe-----eeCCeEeEEe
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-----VIGKQSFRAD 124 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~-----~~~g~~l~v~ 124 (176)
+.|.|.++...++-++|++.|++||.|..|.+..+...|+|.|.+.++|+.|+..+.-. .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57889999999999999999999999999999988889999999999999999766433 4555555444
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=6.4e-07 Score=74.38 Aligned_cols=81 Identities=21% Similarity=0.456 Sum_probs=72.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
+......+++||++||..+++..+++++..||.+....++.+ ++|||.+|.+......|+..|||..+.++.|.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 334456789999999999999999999999999988877764 79999999999999999999999999999999
Q ss_pred EeecCCC
Q 030481 123 ADYGNQW 129 (176)
Q Consensus 123 v~~a~~~ 129 (176)
|+.|...
T Consensus 363 vq~A~~g 369 (500)
T KOG0120|consen 363 VQRAIVG 369 (500)
T ss_pred eehhhcc
Confidence 9998643
No 98
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=7.4e-06 Score=59.39 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=85.7
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCcccc-ccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccc
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQ-YSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~ 79 (176)
|..-+|-.++|-.|+|+++........... +...+.- .....-.-.++......+|.|.+||...++.+|+++..+-
T Consensus 62 iygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrg--Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea 139 (241)
T KOG0105|consen 62 IYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRG--GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA 139 (241)
T ss_pred hhcccccccCcceEEEEeccCCCcccccccccCCCCCC--CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh
Confidence 345578889999999999876643221111 1111111 1111122234445567899999999999999999999999
Q ss_pred CCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeC--CeEeEEee
Q 030481 80 GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSFRADY 125 (176)
Q Consensus 80 G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~--g~~l~v~~ 125 (176)
|.|+...+.++ +.+.|+|...++.+-|+..|....+. |-...+..
T Consensus 140 GdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 140 GDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred CCeeeeeeecc-cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 99999988876 68999999999999999999887653 54444443
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.37 E-value=4.1e-07 Score=67.61 Aligned_cols=65 Identities=29% Similarity=0.569 Sum_probs=55.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHhhCCeeeC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIG 117 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~--rg~afV~f~~~~~a~~ai~~l~g~~~~ 117 (176)
..+.+|||.||..+++|++|+.+|+.|.....++|... ...+|++|++.+.|..|+..|+|..|.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 34568999999999999999999999987666666543 458999999999999999999988764
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.31 E-value=3e-06 Score=69.38 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=62.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
......|-+.+|||++|+++|.++|+..+ |+.+.+.+. .|.|||+|.+++++++|++ .+...+..|-|.|--+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34566788899999999999999999985 777777664 5899999999999999999 47777888888886663
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.30 E-value=1.8e-06 Score=67.75 Aligned_cols=74 Identities=24% Similarity=0.614 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCCCCCHHH----H--HHhhcccCCeEEEEEeCC-------CcE--EEEEecCHHHHHHHHHhhCCeeeCC
Q 030481 54 SNTTIFVGGLDPNVTDED----L--RQPFSQYGEIASVKIPVG-------KGC--GFVQFANRENAEEALHKLNGTVIGK 118 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~----l--~~~F~~~G~i~~i~~~~~-------rg~--afV~f~~~~~a~~ai~~l~g~~~~g 118 (176)
...-+||-+|+..+..++ | .++|.+||.|.+|.+-+. .+. .||+|.+.++|.+||..++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 445689999998766655 3 588999999999987653 232 3999999999999999999999999
Q ss_pred eEeEEeecC
Q 030481 119 QSFRADYGN 127 (176)
Q Consensus 119 ~~l~v~~a~ 127 (176)
|.|++.|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999999986
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.22 E-value=7.3e-06 Score=67.17 Aligned_cols=74 Identities=26% Similarity=0.411 Sum_probs=58.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE-EEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~-i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.....|-+.+||+.|+++||.++|+..-.+.. |.++.+ .|.|||.|++.+.|++|+.. |...|..|-|.|.-+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35678889999999999999999998754444 334433 48999999999999999885 667788887877655
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.17 E-value=5.5e-06 Score=48.46 Aligned_cols=52 Identities=31% Similarity=0.646 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHH
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai 108 (176)
+.|-|.+.+.+..+. +..+|.+||+|.++.+.....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 567788999887655 4558999999999998877899999999999999985
No 104
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.03 E-value=1.8e-05 Score=62.60 Aligned_cols=81 Identities=27% Similarity=0.376 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE--------EEEeCC------CcEEEEEecCHHHHHHHHHhhCCeee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGTVI 116 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~ 116 (176)
......+|||.+|+..+++.+|.++|.+.+.|.. |.|.++ |+-|.|.|+|..+|+.||+.++++.+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3566789999999999999999999999987642 223222 79999999999999999999999999
Q ss_pred CCeEeEEeecCCCCC
Q 030481 117 GKQSFRADYGNQWSG 131 (176)
Q Consensus 117 ~g~~l~v~~a~~~~~ 131 (176)
.+..|+|.+|.....
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999976553
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.00 E-value=4.7e-05 Score=50.42 Aligned_cols=72 Identities=28% Similarity=0.398 Sum_probs=53.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEE-------------EeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCe-
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-------------IPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ- 119 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~-------------~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~- 119 (176)
..+.|.|-+.|... ...+.+.|++||.|.+.. ......+..|+|++..+|.+||.. ||..+.|.
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 45678888999984 466778899999998874 455678999999999999999995 99999885
Q ss_pred EeEEeecC
Q 030481 120 SFRADYGN 127 (176)
Q Consensus 120 ~l~v~~a~ 127 (176)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45566653
No 106
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.74 E-value=6.6e-05 Score=65.70 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK--QSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a~~ 128 (176)
.....+.+++++|..++....|...|..||.|..|.+-....|++|.|++...++.|++.+.|..|.+ ++++|.|+..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 34568899999999999999999999999999999998888899999999999999999999999875 7899999985
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
..
T Consensus 531 ~~ 532 (975)
T KOG0112|consen 531 PG 532 (975)
T ss_pred CC
Confidence 53
No 107
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.74 E-value=1.6e-05 Score=60.28 Aligned_cols=67 Identities=27% Similarity=0.467 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------------------CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------------------KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------------------rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
..-.||+++||+.++...|+++|+.||.|-+|.+... -..++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999987652 1348999999999999999999999
Q ss_pred eCCeE
Q 030481 116 IGKQS 120 (176)
Q Consensus 116 ~~g~~ 120 (176)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 108
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.68 E-value=0.00011 Score=58.24 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=55.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC--CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeE
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~ 120 (176)
..-++|||||-|++|++||.+.+...| .+.++++..+ ||||+|...+..+..+.++-|.-++|.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 345789999999999999998887766 4555555443 799999999999999999999999998864
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.67 E-value=0.0002 Score=61.28 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=59.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCe-EEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i-~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
+.|-+.|+|++++.+||.++|..|-.+ .+|.+..+ .|.|.|.|++.+.|.+|...|+++.|.+|.|++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 377789999999999999999999543 34444332 58999999999999999999999999999999875
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00042 Score=58.13 Aligned_cols=75 Identities=25% Similarity=0.410 Sum_probs=60.7
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeC-CeE
Q 030481 53 SSNTTIFVGGLDPNVTD------EDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG-KQS 120 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~------~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~-g~~ 120 (176)
.-...|+|.|+|---.. ..|..+|+++|+|..+.++.+ +|+.|++|.+..+|+.|++.|||+.|+ ++.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 45678889999874332 356788999999999888754 799999999999999999999999986 677
Q ss_pred eEEeecC
Q 030481 121 FRADYGN 127 (176)
Q Consensus 121 l~v~~a~ 127 (176)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776443
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.56 E-value=0.00045 Score=48.57 Aligned_cols=73 Identities=25% Similarity=0.415 Sum_probs=52.5
Q ss_pred CCCCeEEEcCCC----C--CCCH---HHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 53 SSNTTIFVGGLD----P--NVTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 53 ~~~~~l~v~~L~----~--~~~~---~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
++..+|.|.=+. . ..++ .+|.+.|..||.+.-+++.. +.-+|+|.+.++|.+|+. ++|..+.|+.|+|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 455666665444 1 2333 36677888999988888774 578999999999999998 8999999999999
Q ss_pred eecCC
Q 030481 124 DYGNQ 128 (176)
Q Consensus 124 ~~a~~ 128 (176)
+..++
T Consensus 102 ~LKtp 106 (146)
T PF08952_consen 102 RLKTP 106 (146)
T ss_dssp EE---
T ss_pred EeCCc
Confidence 98763
No 112
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.55 E-value=9e-05 Score=58.24 Aligned_cols=78 Identities=33% Similarity=0.577 Sum_probs=68.5
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 54 SNTTIF-VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 54 ~~~~l~-v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
...++| |++|+..+++++|+.+|..+|.|..+++..+ +++++|.|.+...+..++.. +...+.++.+.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 9999999999999999999999999988764 68999999999999999887 888899999999999
Q ss_pred CCCCCC
Q 030481 127 NQWSGA 132 (176)
Q Consensus 127 ~~~~~~ 132 (176)
++.+..
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 877544
No 113
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.55 E-value=0.00019 Score=60.42 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhccc-CCeEEEEEe-CCCcEEEEEecCHHHHHHHHHhhCCeee---CCeEeEE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIP-VGKGCGFVQFANRENAEEALHKLNGTVI---GKQSFRA 123 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~i~~~-~~rg~afV~f~~~~~a~~ai~~l~g~~~---~g~~l~v 123 (176)
+.....++.|||.||-.-+|..+|+.++..- |.|.++ +| +-|..|||.|.+.+.|...+.+|||..+ +.+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3355678899999999999999999999964 556665 33 2278999999999999999999999986 5789999
Q ss_pred eecC
Q 030481 124 DYGN 127 (176)
Q Consensus 124 ~~a~ 127 (176)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 9986
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.50 E-value=0.00041 Score=55.70 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCC-eEE--EEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IAS--VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~-i~~--i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
....+|-+.+||...+.++|.++|..|.. |.. +.++.+ .|.|||+|.+.++|..|....+.+..+.|-|.|-
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 33668889999999999999999999863 433 455443 5899999999999999999888888889988887
Q ss_pred ecC
Q 030481 125 YGN 127 (176)
Q Consensus 125 ~a~ 127 (176)
-+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 665
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00037 Score=57.77 Aligned_cols=59 Identities=27% Similarity=0.535 Sum_probs=47.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC---------CCc---EEEEEecCHHHHHHHHHhh
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKG---CGFVQFANRENAEEALHKL 111 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~---------~rg---~afV~f~~~~~a~~ai~~l 111 (176)
..-+++||||+||++++|+.|...|..||.+ .+.+.. .+| |+|+.|+++.++..-+...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3457899999999999999999999999974 334441 156 9999999999988766544
No 116
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=0.00024 Score=54.00 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=65.9
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i 82 (176)
+|++...-||.++|.++. ...|+|.||...++.+.|...|+.||.|
T Consensus 13 eLd~~~~~~~~lr~rfa~----------------------------------~a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 13 ELDGRFPKGRSLRVRFAM----------------------------------HAELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred hcCCCCCCCCceEEEeec----------------------------------cceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 578888888999999884 2689999999999999999999999999
Q ss_pred EEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCe
Q 030481 83 ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGT 114 (176)
Q Consensus 83 ~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~ 114 (176)
....+..| .+-++|.|...-.+.+|+..+.-.
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 87766654 468899999999999999877433
No 117
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.37 E-value=0.00022 Score=57.27 Aligned_cols=71 Identities=23% Similarity=0.458 Sum_probs=59.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE-ee
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA-DY 125 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v-~~ 125 (176)
..|.|.||.+..+.++++.+|...|+|.++.|+.+ ...|||.|.|..++..|.. |.+..+-++.|.| -|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 38899999999999999999999999999998873 4689999999999998876 7777766665544 44
Q ss_pred cC
Q 030481 126 GN 127 (176)
Q Consensus 126 a~ 127 (176)
+.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.34 E-value=0.00033 Score=56.83 Aligned_cols=61 Identities=30% Similarity=0.426 Sum_probs=53.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-------------------CcEEEEEecCHHHHHHHHHhhC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------------------KGCGFVQFANRENAEEALHKLN 112 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-------------------rg~afV~f~~~~~a~~ai~~l~ 112 (176)
.-.+++|.+.|||.+-.-+.|.++|+.+|.|..|+|..- +-||+|+|+..+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347899999999999888999999999999999998652 4689999999999999998764
No 119
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.32 E-value=9.6e-05 Score=56.14 Aligned_cols=57 Identities=28% Similarity=0.454 Sum_probs=47.9
Q ss_pred HHHHhhc-ccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 71 DLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 71 ~l~~~F~-~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+|...|+ +||+|++++|-.+ +|-++|.|..+++|++|++.||+.-+.|++|.+.+.-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444445 8899999876654 6889999999999999999999999999999988764
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.30 E-value=0.00026 Score=57.45 Aligned_cols=72 Identities=25% Similarity=0.413 Sum_probs=58.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCee-eCCeEeEEeecC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV-IGKQSFRADYGN 127 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~-~~g~~l~v~~a~ 127 (176)
.++|++||.+..+.++|+.+|...-.-..-.++...+++||.+.+...|.+|++.++|+. +.|+++.+.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 478999999999999999999765211111233347999999999999999999999986 889999988774
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.21 E-value=0.0011 Score=51.52 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=49.8
Q ss_pred HHHHHhhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 70 EDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 70 ~~l~~~F~~~G~i~~i~~~~~-------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+++++.+++||.|..|.|... ---.||+|+..++|.+|+..|||..+.||.++.+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 567888899999999877653 2347999999999999999999999999999988854
No 122
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0015 Score=54.31 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=54.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhc-ccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHH
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG------KGCGFVQFANRENAEEALH 109 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~-~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~ 109 (176)
...-.+.++||||+||.-++.++|-.+|+ -||.|..+-|..| +|-+-|+|++-.+-.+||+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 34456788999999999999999999999 6999999888776 6999999999999999986
No 123
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.02 E-value=0.0043 Score=43.41 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=56.1
Q ss_pred CCCCCCeEEEcCCCCCC----CHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 51 GDSSNTTIFVGGLDPNV----TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~----~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.+++-.+|.|.=|..++ +-..+...++.||+|..+.+ .++.-|.|.|.|..+|.+|+.+++. ..-|..+.+.|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 45566778787665543 33445556688999999854 4678899999999999999998876 567788888874
No 124
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0014 Score=54.94 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=56.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcc--cCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCC--eeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~--~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g--~~~~g~~l~v~~ 125 (176)
....|.|.+.-||+.+.+++++.+|.. +-++..|.+-.+.+ =||+|++..+|+.|.+.|.. ++|.|+.|..++
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 345677888999999999999999975 66788887765544 48999999999999877643 347777765544
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.87 E-value=0.0078 Score=36.17 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccc---CCeEEEEEeCCCcEEEEEecCHHHHHHHHHhh
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQY---GEIASVKIPVGKGCGFVQFANRENAEEALHKL 111 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~---G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l 111 (176)
..+|+|.|+. +++.++++.+|..| .....|.++-|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 4689999994 57778999999988 135677777664 4778899999999999764
No 126
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.77 E-value=0.0071 Score=44.55 Aligned_cols=62 Identities=23% Similarity=0.227 Sum_probs=48.5
Q ss_pred CHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhC--CeeeCCeEeEEeecCCC
Q 030481 68 TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSFRADYGNQW 129 (176)
Q Consensus 68 ~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~--g~~~~g~~l~v~~a~~~ 129 (176)
....|+++|..++.+..+..++.-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999888888887789999999999999999999 99999999999999644
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.52 E-value=0.00086 Score=52.94 Aligned_cols=74 Identities=22% Similarity=0.472 Sum_probs=60.7
Q ss_pred CCCeEEEcCCCCCCCHHHH---HHhhcccCCeEEEEEeCCC---------cEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 54 SNTTIFVGGLDPNVTDEDL---RQPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l---~~~F~~~G~i~~i~~~~~r---------g~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
...-+||-+|+..+.++.+ .+.|.+||.|..|.+..+. --++|+|...++|..||...+|..++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4467888999987666544 3678889999999776642 237999999999999999999999999999
Q ss_pred EEeecC
Q 030481 122 RADYGN 127 (176)
Q Consensus 122 ~v~~a~ 127 (176)
++.++.
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 888876
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.18 E-value=9.3e-05 Score=59.96 Aligned_cols=98 Identities=20% Similarity=0.382 Sum_probs=78.9
Q ss_pred CCccCC-cccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccc
Q 030481 1 MTEMNG-VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (176)
Q Consensus 1 i~~mng-~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~ 79 (176)
|++++| .++.|+++.|....++..+ ++++-|.|+|....++.|..++.+|
T Consensus 54 ie~~sgk~elqGkr~e~~~sv~kkqr-----------------------------srk~Qirnippql~wevld~Ll~qy 104 (584)
T KOG2193|consen 54 IETLSGKVELQGKRQEVEHSVPKKQR-----------------------------SRKIQIRNIPPQLQWEVLDSLLAQY 104 (584)
T ss_pred HHhhchhhhhcCceeeccchhhHHHH-----------------------------hhhhhHhcCCHHHHHHHHHHHHhcc
Confidence 355666 5688888888877766543 4567899999999999999999999
Q ss_pred CCeEEEEEeC-C--CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 80 GEIASVKIPV-G--KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 80 G~i~~i~~~~-~--rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
|.++.|.... + .-..-|+|...+.+..||..|+|..+....+++.|--
T Consensus 105 g~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 105 GTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred CCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 9998886543 2 2344568889999999999999999999999998863
No 129
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.07 E-value=0.0059 Score=50.37 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 53 SSNTTIFVGGLDPNV-TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~-~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.+.+.|-+.-.+..+ +.++|..+|.+||+|..|.+-..--.|.|+|.+...|-+|.. .++..|++|.|+|.|-++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 445555566666653 458999999999999999887666779999999999977766 6999999999999998763
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.06 E-value=0.0074 Score=52.11 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=60.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE-EEEeC---C--CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV---G--KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~-i~~~~---~--rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.......|||..||..+++.++.+.|.....|++ |.|-. + ++.|||.|..++++..|...-+.+.+..|.|+|+
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 3456789999999999999999999998777766 55543 2 5899999999888888877556666778888886
Q ss_pred ec
Q 030481 125 YG 126 (176)
Q Consensus 125 ~a 126 (176)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 43
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.059 Score=42.28 Aligned_cols=65 Identities=28% Similarity=0.426 Sum_probs=52.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
..-|-|-+++..-. .-|..+|+++|.|.+.....+-.|-+|.|.+...|++||.. +|..|+|..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 56677778887644 45677899999999886665557999999999999999985 9999987653
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.04 E-value=0.089 Score=35.45 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=46.2
Q ss_pred CeEEE-cCCCCCCCHHHHHHhhcccC-CeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCC
Q 030481 56 TTIFV-GGLDPNVTDEDLRQPFSQYG-EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGK 118 (176)
Q Consensus 56 ~~l~v-~~L~~~~~~~~l~~~F~~~G-~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g 118 (176)
..+.+ ...|..++.++|..+.+.+- .|..++++++ +=.+.++|.+.++|....+.+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444 44455566566766555554 5788888886 3478999999999999999999998643
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.03 E-value=0.011 Score=52.03 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeee--CCeEeEEeecCCC
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSFRADYGNQW 129 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~--~g~~l~v~~a~~~ 129 (176)
+.++.|.+-..+...|..+|..||.|......++-..+.|.|.+.++|..|+++|+|+.+ .|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 445555566778889999999999999998888889999999999999999999999984 5888999999854
No 134
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.85 E-value=0.017 Score=42.26 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=49.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc-cCCe---EEEEEeCC--------CcEEEEEecCHHHHHHHHHhhCCeeeCC---
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQ-YGEI---ASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIGK--- 118 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~-~G~i---~~i~~~~~--------rg~afV~f~~~~~a~~ai~~l~g~~~~g--- 118 (176)
...+|.|++||+.+|++++.+.+.. ++.. ..+.-..+ ..-|+|.|.+.+++...+..++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 5679999999999999999887776 5544 23321111 2579999999999999999999988633
Q ss_pred --eEeEEeecC
Q 030481 119 --QSFRADYGN 127 (176)
Q Consensus 119 --~~l~v~~a~ 127 (176)
....|.+|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 234666653
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.69 E-value=0.002 Score=56.77 Aligned_cols=79 Identities=25% Similarity=0.500 Sum_probs=66.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
...+...+.+||++||+..+++.+|+..|..+|.|.+|.|..- .-++||.|.+...+..|+..+.+..|....++
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3345566889999999999999999999999999999988653 46999999999999999988888887665555
Q ss_pred Eeec
Q 030481 123 ADYG 126 (176)
Q Consensus 123 v~~a 126 (176)
+.+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 5555
No 136
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.68 E-value=0.12 Score=32.87 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=41.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~ 112 (176)
..+.++|. +|......||..+|+.||.|. |.++.+ .-|||.....+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-CcEEEEeecHHHHHHHHHHhc
Confidence 34566665 999999999999999999864 344443 569999999999999988775
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.65 E-value=0.00053 Score=59.91 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=51.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEe--CC----CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VG----KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~--~~----rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
....++||.||+..+.+.+|...|..++.+..+.+. .+ ||.|++.|.+.+.+.+||.......
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh
Confidence 345689999999999999999999999987766554 11 7999999999999999987544433
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.56 E-value=0.0057 Score=53.70 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
....+|+|.|+|+..|.++|+.++..+|.+.++.++.. +|.++|.|.++.++.+++...+...+.-+.+.|..+.
T Consensus 734 ~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 734 FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 34678999999999999999999999999998876654 6899999999999999998888888777777777754
No 139
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.51 E-value=0.13 Score=41.70 Aligned_cols=66 Identities=29% Similarity=0.347 Sum_probs=47.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccc----CCeEEEEEeC--C---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQY----GEIASVKIPV--G---KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~----G~i~~i~~~~--~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
-.|-+.+||.++++.++.++|..- |..+.|.++. | .|-|||.|..++.|+.|+.. |...|.-|-|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 456678999999999999999632 2334444433 2 48999999999999999874 44444444443
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.08 E-value=0.18 Score=31.29 Aligned_cols=67 Identities=25% Similarity=0.429 Sum_probs=39.0
Q ss_pred eEEEc-CCCCCCCHHHHHHhhcccC-----CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 57 TIFVG-GLDPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 57 ~l~v~-~L~~~~~~~~l~~~F~~~G-----~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
++||. +=-..++..+|..++..-+ .|-.|++. ..|+||+-.. +.+..++..|++..+.|++|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45552 2234688889988887664 35566666 5688888754 5788899999999999999999864
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.53 E-value=0.047 Score=46.95 Aligned_cols=79 Identities=22% Similarity=0.218 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 44 ~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
+..+....-++..+|||+|+...+..+-++.++...|-|..++... |+|.+|.++....+|+..++-..++|..+.+
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3334445556788999999999999999999999999887765543 9999999999999999988888888887755
Q ss_pred ee
Q 030481 124 DY 125 (176)
Q Consensus 124 ~~ 125 (176)
.-
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 44
No 142
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.18 E-value=0.38 Score=29.27 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=43.4
Q ss_pred CCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 66 NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 66 ~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
.++-++++..+..|+ ..+| ..++---||.|.+.++|++|....++..+-..++.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999995 3443 345555799999999999999999999887766654
No 143
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=93.83 E-value=0.18 Score=37.94 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCccCCcccCCcceeeecCCC-CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccc
Q 030481 1 MTEMNGVYCSSRPMRIGAATP-RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~ 79 (176)
|+.|+|..|.|+.|+|.++.. ...+...... ......................+++.+++..++..++...|..+
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (306)
T COG0724 174 IEELNGKELEGRPLRVQKAQPASQPRSELSNN----LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR 249 (306)
T ss_pred HHHcCCCeECCceeEeeccccccccccccccc----cchhhhccccccccccccccceeeccccccccchhHHHHhcccc
Confidence 357899999999999999764 1111100000 00000000112223344567889999999999999999999999
Q ss_pred CCeEEEEEeCC
Q 030481 80 GEIASVKIPVG 90 (176)
Q Consensus 80 G~i~~i~~~~~ 90 (176)
|.+....+...
T Consensus 250 ~~~~~~~~~~~ 260 (306)
T COG0724 250 GDIVRASLPPS 260 (306)
T ss_pred ccceeeeccCC
Confidence 99877666543
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.46 E-value=0.27 Score=40.76 Aligned_cols=65 Identities=17% Similarity=0.327 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc-CCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGK 118 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g 118 (176)
.+..|+|-.+|..++..||..+...+ -.|..++++++ +=...|+|.+.++|....+.+||+.+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 38899999999999999999988876 46889999886 4578999999999999999999998653
No 145
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.06 E-value=0.6 Score=36.59 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=40.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCe-EEEEEeCCCcEEEEEecCHH
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVGKGCGFVQFANRE 102 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i-~~i~~~~~rg~afV~f~~~~ 102 (176)
....-|+++||+.++.-.||+..+.+.+.+ .++.+.-.++-||++|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 334569999999999999999999888754 66667667889999997643
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.73 E-value=0.37 Score=40.81 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=30.9
Q ss_pred CcEEEEEecCHHHHHHHHHhhCCeee---C-CeEeEEeecC
Q 030481 91 KGCGFVQFANRENAEEALHKLNGTVI---G-KQSFRADYGN 127 (176)
Q Consensus 91 rg~afV~f~~~~~a~~ai~~l~g~~~---~-g~~l~v~~a~ 127 (176)
.|||||.|.+.+++..+.+++||+.+ . .+...+.||.
T Consensus 431 vGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 431 VGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 59999999999999999999999974 3 3455777775
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=1.3 Score=38.00 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=60.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhccc----CCeEEEEEeCC------------------------------------
Q 030481 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPVG------------------------------------ 90 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~-~~~~~l~~~F~~~----G~i~~i~~~~~------------------------------------ 90 (176)
...+++|-|.||.|+ +...+|.-+|..| |.|.+|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 8889999999877 58888887541
Q ss_pred --------------C---cEEEEEecCHHHHHHHHHhhCCeeeCC--eEeEEee
Q 030481 91 --------------K---GCGFVQFANRENAEEALHKLNGTVIGK--QSFRADY 125 (176)
Q Consensus 91 --------------r---g~afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~ 125 (176)
| =||.|+|.+.+.|....+.++|..+.. ..|.++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 279999999999999999999999874 4555555
No 148
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.00 E-value=0.32 Score=35.51 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=56.1
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCe-EeEEeecCC
Q 030481 55 NTTIFVGGLDPNVTD-----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SFRADYGNQ 128 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~-----~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~-~l~v~~a~~ 128 (176)
...+.+.+++..+-. ...+.+|.+|-+.....+.+..+...|.|.+.+.|..|...++...+.|+ .++.-|+..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 345667777764222 34456667776666666776777888999999999999999999999988 888888764
Q ss_pred C
Q 030481 129 W 129 (176)
Q Consensus 129 ~ 129 (176)
-
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
No 149
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=88.11 E-value=0.12 Score=29.87 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=16.0
Q ss_pred CccCCcccCCcceeeecC
Q 030481 2 TEMNGVYCSSRPMRIGAA 19 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a 19 (176)
+.|||..++|++|+|.+|
T Consensus 39 ~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 39 EQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHTTSEETTEEEEEEEE
T ss_pred HHhCCCEECCcEEEEEEC
Confidence 468999999999999975
No 150
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.35 Score=36.49 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCccCCcccCCcceeeecCCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSG 26 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~ 26 (176)
|..||+.+|.||.|+|++|.+.+..+
T Consensus 69 iDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 69 IDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred hhcCchhhhcceeEEEeecCCccccC
Confidence 56899999999999999999876543
No 151
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=84.11 E-value=0.55 Score=33.14 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.9
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|++||+.+|+|++|+|+++..+...
T Consensus 93 l~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 93 ISEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred HHHcCCCEECCEEEEEEeCCcCCCC
Confidence 3579999999999999999876543
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=83.17 E-value=0.92 Score=35.82 Aligned_cols=75 Identities=24% Similarity=0.273 Sum_probs=58.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC------CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~------~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
...+++|++++.+.+.+.+...++...|.+....+.. .++++.+.|...+.+..|+.....+.+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3578999999999999998888888888665554432 2799999999999999999854445666776666555
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
+
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 4
No 153
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.88 E-value=3.6 Score=33.93 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=45.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCC-eEEEEEeCCCcEEEEEecCHHHHHHHHH
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALH 109 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~-i~~i~~~~~rg~afV~f~~~~~a~~ai~ 109 (176)
-.+.|-|.++|.....+||...|+.|+. -.+|.++ +.-.+|-.|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhh
Confidence 4577888999999888999999999974 4556555 45679999999999999987
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.24 E-value=5.4 Score=31.50 Aligned_cols=76 Identities=13% Similarity=0.277 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCC-------------cEEEEEecCHHHHHHHH----HhhCC-
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-------------GCGFVQFANRENAEEAL----HKLNG- 113 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~r-------------g~afV~f~~~~~a~~ai----~~l~g- 113 (176)
.-..+.|.+.|+..+++--.+...|.+||+|+.|.++.+. ....+.|-+.+.+-... +.|.-
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999998754 67788998887765542 33332
Q ss_pred -eeeCCeEeEEeecC
Q 030481 114 -TVIGKQSFRADYGN 127 (176)
Q Consensus 114 -~~~~g~~l~v~~a~ 127 (176)
..+....|++.|-.
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 23666777777654
No 155
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=74.39 E-value=1 Score=33.71 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.9
Q ss_pred CCccCCcccCCcceeeecCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~ 24 (176)
|++|+|.+|+|+.|+|+.|.-...
T Consensus 72 ~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 72 LDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred HHhhcceeeccceeeehhhhcCCC
Confidence 578999999999999999886655
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=70.39 E-value=0.49 Score=38.62 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=50.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHhhCCeeeC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIG 117 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~--~rg~afV~f~~~~~a~~ai~~l~g~~~~ 117 (176)
.+++|++|+..+...++-++|..+|+|....+-. +..+|-+.|....+...|+. .+|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6789999999999999999999999987766543 25678899999888888887 4776655
No 157
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=66.48 E-value=5.4 Score=33.48 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.3
Q ss_pred CCccCCcccCCcceeeecCCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSG 26 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~ 26 (176)
|+.|||.++.||+|+|+|+...+.+.
T Consensus 77 ~~~lNg~~~~gr~l~v~~~~~~~~~~ 102 (435)
T KOG0108|consen 77 IRNLNGAEFNGRKLRVNYASNRKNAE 102 (435)
T ss_pred HHhcCCcccCCceEEeecccccchhH
Confidence 46799999999999999998876643
No 158
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=65.08 E-value=12 Score=30.74 Aligned_cols=63 Identities=19% Similarity=0.387 Sum_probs=47.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC-CeEEEEEeCC--------CcEEEEEecCHHHHHHHHHhhCCeee
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVI 116 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~i~~~~~--------rg~afV~f~~~~~a~~ai~~l~g~~~ 116 (176)
.-++|.|.+||..+++.+|.+-...|- .+....+... .+.++|.|...++.......++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 356888999999999998887776653 2333323211 47899999999999888899999985
No 159
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=65.07 E-value=4.6 Score=26.02 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhc
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFS 77 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~ 77 (176)
....++|.|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34678999999999999999997654
No 160
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=62.29 E-value=1.6 Score=37.23 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=52.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
..|++|+.|+++.++-++|..++..+.-+..+-+-.. ..+.+|+|+-.-....|+.+||++.+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 3578999999999999999999999876666654432 4678999987777777788888877655443
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.74 E-value=20 Score=21.49 Aligned_cols=19 Identities=47% Similarity=0.676 Sum_probs=15.8
Q ss_pred HHHHHhhcccCCeEEEEEe
Q 030481 70 EDLRQPFSQYGEIASVKIP 88 (176)
Q Consensus 70 ~~l~~~F~~~G~i~~i~~~ 88 (176)
.+|+++|+..|.|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998877553
No 162
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=60.05 E-value=3.5 Score=33.04 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.0
Q ss_pred CccCCcccCCcceeeecCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKS 24 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~ 24 (176)
++|+|..|.||+|.|+.|..+-.
T Consensus 154 a~LHgt~VEGRkIEVn~ATarV~ 176 (376)
T KOG0125|consen 154 AELHGTVVEGRKIEVNNATARVH 176 (376)
T ss_pred HHhhcceeeceEEEEeccchhhc
Confidence 47899999999999999988743
No 163
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=57.47 E-value=74 Score=26.65 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=28.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhccc----CCeEEEEEe
Q 030481 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIP 88 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~-~~~~~l~~~F~~~----G~i~~i~~~ 88 (176)
...+.+|-|-||.|+ +...+|..+|+.| |.+..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 445678889999986 7778999888876 577777654
No 164
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=54.06 E-value=3.2 Score=31.47 Aligned_cols=62 Identities=35% Similarity=0.486 Sum_probs=45.8
Q ss_pred CCCeEEEcC----CCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 54 SNTTIFVGG----LDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 54 ~~~~l~v~~----L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
...+++.|+ |...++++.+...|+.-+.+..+++..+ +.+.|+++.-..+.-.++....+..
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 344555666 7778899999999999999988887663 5688888877666666666555444
No 165
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=53.66 E-value=39 Score=21.27 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=25.3
Q ss_pred CeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeee
Q 030481 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVI 116 (176)
Q Consensus 81 ~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~ 116 (176)
.|.++-...+ +||-||+=.+..++..|++.+.+...
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 4566644444 89999999999999999998876653
No 166
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.42 E-value=51 Score=21.00 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcc-cC-CeEEEEEeC---CCcEEEEEecCHHHHHHHHHh
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALHK 110 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~-~G-~i~~i~~~~---~rg~afV~f~~~~~a~~ai~~ 110 (176)
.-|+--++...+..+++..++. |+ .|..|..+. +..-|||++.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 3455567888999999999987 66 567765543 335699999988888776544
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=52.17 E-value=17 Score=28.87 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=23.4
Q ss_pred EEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 94 GFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 94 afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
|||+|++..+|..|++.+.... .+.+++..|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998655444 2444555553
No 168
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=51.22 E-value=15 Score=24.96 Aligned_cols=42 Identities=14% Similarity=0.334 Sum_probs=22.1
Q ss_pred CCHHHHHHhhcccCCeEEEEEeCC---CcEEEEEecC-HHHHHHHH
Q 030481 67 VTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFAN-RENAEEAL 108 (176)
Q Consensus 67 ~~~~~l~~~F~~~G~i~~i~~~~~---rg~afV~f~~-~~~a~~ai 108 (176)
++.+.|++.|..|..+.-..+... .+++.|+|.+ -..-..|+
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 345789999999987643333222 5899999985 33334444
No 169
>PLN03213 repressor of silencing 3; Provisional
Probab=45.84 E-value=7.4 Score=33.12 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.9
Q ss_pred CCccCCcccCCcceeeecCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATP 21 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~ 21 (176)
|++|||.++.||.|+|+.|++
T Consensus 67 ISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HHHhcCCeecCceeEEeeccH
Confidence 468999999999999999875
No 170
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.75 E-value=74 Score=19.88 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=39.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcc-cC-CeEEEEEeC---CCcEEEEEecCHHHHHHHHHh
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALHK 110 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~-~G-~i~~i~~~~---~rg~afV~f~~~~~a~~ai~~ 110 (176)
.-|+-.++.+.+..+++..++. |+ .|..+..+. +.--|||++...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4556678889999999999987 56 566665443 335699999888777665443
No 171
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.77 E-value=65 Score=18.40 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCH----HHHHHHHHh
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR----ENAEEALHK 110 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~----~~a~~ai~~ 110 (176)
++.|.||.=.--...++..+...-.|..+.+....+-.-|.|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 355656655555577888888888899999988888899999854 455555554
No 172
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=39.40 E-value=21 Score=18.91 Aligned_cols=16 Identities=13% Similarity=0.437 Sum_probs=10.3
Q ss_pred CCCCHHHHHHhhcccC
Q 030481 65 PNVTDEDLRQPFSQYG 80 (176)
Q Consensus 65 ~~~~~~~l~~~F~~~G 80 (176)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998764
No 173
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.87 E-value=41 Score=20.43 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=23.4
Q ss_pred cEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 92 GCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 92 g~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
...+|.|.+...|.+|-+.|....+..+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 367899999999999988887666655443
No 174
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=37.31 E-value=22 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=19.9
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+..|||+.|.||.|+|.........
T Consensus 94 VDN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 94 VDNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred EeccCCceecceeEEeeecccccCC
Confidence 3579999999999999887655443
No 175
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.96 E-value=35 Score=26.24 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=28.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEE
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i 85 (176)
.....++|+-|+|..++++.|.++.++.|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 4467899999999999999999999998865554
No 176
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=32.88 E-value=81 Score=27.87 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=28.9
Q ss_pred EEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCCCC
Q 030481 96 VQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSGAY 133 (176)
Q Consensus 96 V~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (176)
+.|+++++|.+||.. +..-.|..|.|+|.-++.+++
T Consensus 452 ~VFdsee~a~~ai~~--g~I~~gdVvVIRyeGPkGgPG 487 (615)
T PRK12448 452 RVFESQDDAVEAILG--GKVKAGDVVVIRYEGPKGGPG 487 (615)
T ss_pred EEECCHHHHHHHHhc--CCCCCCeEEEEeCCCCCCCcC
Confidence 459999999999884 666678999999988776433
No 177
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=31.80 E-value=93 Score=27.06 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=30.0
Q ss_pred CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCC
Q 030481 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSG 131 (176)
Q Consensus 91 rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~ 131 (176)
+|-|.| |++++++.+|+. ++..-.|..|.|+|.-++.+
T Consensus 383 ~G~A~V-F~see~a~~ai~--~g~i~~gdVvViRyeGPkGg 420 (535)
T TIGR00110 383 EGPAKV-FESEEEALEAIL--GGKIKEGDVVVIRYEGPKGG 420 (535)
T ss_pred EEeEEE-ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCC
Confidence 454544 999999999988 46666788999999887753
No 178
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=31.56 E-value=89 Score=27.28 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=29.6
Q ss_pred CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCC
Q 030481 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSG 131 (176)
Q Consensus 91 rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~ 131 (176)
+|-| +.|++++++.+||. ++..-.|..|.++|.-|+.+
T Consensus 398 ~GpA-~VF~see~a~~ai~--~g~I~~gdVvViRyeGPkGg 435 (552)
T PRK00911 398 TGPA-RVFDSEEEAMEAIL--AGKIKAGDVVVIRYEGPKGG 435 (552)
T ss_pred eeeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCC
Confidence 3444 45999999999988 46666788999999887763
No 179
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.74 E-value=1e+02 Score=19.75 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC---CCcEEEEEec
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQFA 99 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~---~rg~afV~f~ 99 (176)
...-|||++++..+.|.-...+.+..+.-.-+-+.. .-||.|-+.-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 355799999999988877777666544333333333 2578887763
No 180
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=30.24 E-value=2.4e+02 Score=25.11 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=49.5
Q ss_pred CeEEEc-CCCCCCCHHHHHHhhcccCCeE-----EEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 56 TTIFVG-GLDPNVTDEDLRQPFSQYGEIA-----SVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 56 ~~l~v~-~L~~~~~~~~l~~~F~~~G~i~-----~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
.++||. +=...++..+|..++..-+.|. .|+|. ..|.||+-.. +.+...+..|++..+.|++|.|+.++
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 345552 3334688888888887665443 44444 5688998754 55778888999999999999999875
No 181
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=29.89 E-value=1.1e+02 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=28.5
Q ss_pred EEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCCCC
Q 030481 96 VQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSGAY 133 (176)
Q Consensus 96 V~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (176)
+.|++++++.+||. ++..-.|..+.|+|.-|+.+++
T Consensus 419 ~VFds~e~~~~ai~--~g~l~~g~VvVIRyeGPkGgpG 454 (575)
T COG0129 419 RVFDSQEDAIKAIL--DGELKAGDVVVIRYEGPKGGPG 454 (575)
T ss_pred EEECCHHHHHHHHh--cCCCCCCeEEEEeccCCCCCCC
Confidence 45999999999987 6666668899999988876433
No 182
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=28.99 E-value=55 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=14.6
Q ss_pred CccCCcccCCcceeeecCC
Q 030481 2 TEMNGVYCSSRPMRIGAAT 20 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~ 20 (176)
.+|.++.+.+++|.|..-.
T Consensus 43 ~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 43 STLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHhhhcccCCCcEEEEECC
Confidence 4567788889999988764
No 183
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.72 E-value=1.4e+02 Score=19.31 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHhhcccCC-eEEEEEeCC--CcEEEEEecCHHHHHHHHHhhC
Q 030481 62 GLDPNVTDEDLRQPFSQYGE-IASVKIPVG--KGCGFVQFANRENAEEALHKLN 112 (176)
Q Consensus 62 ~L~~~~~~~~l~~~F~~~G~-i~~i~~~~~--rg~afV~f~~~~~a~~ai~~l~ 112 (176)
.+.+.++...+..-|-.-|. -....+-+| +.+|.|+|.+.+.+..|...|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 44556677777666655552 222233344 6899999999999999877653
No 184
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=26.93 E-value=1.5e+02 Score=17.85 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=29.1
Q ss_pred HHHHHhhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHhh
Q 030481 70 EDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKL 111 (176)
Q Consensus 70 ~~l~~~F~~~G~i~~i~~~~~--rg~afV~f~~~~~a~~ai~~l 111 (176)
.++.+.+.++| +.-..+.-. -++.|+-+.+.+.++++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 35666677888 444455544 568888888999988888766
No 185
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=25.84 E-value=1.5e+02 Score=26.09 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=28.5
Q ss_pred CcEEEEEecCHHHHHHHHHhhCCeee--CCeEeEEeecCCCCC
Q 030481 91 KGCGFVQFANRENAEEALHKLNGTVI--GKQSFRADYGNQWSG 131 (176)
Q Consensus 91 rg~afV~f~~~~~a~~ai~~l~g~~~--~g~~l~v~~a~~~~~ 131 (176)
+|-|. .|+++++|.+|+. ++..- .|..|.|+|.-++.+
T Consensus 401 ~G~A~-VF~see~a~~ai~--~g~i~i~~gdVvVIRyeGPkGg 440 (571)
T PRK06131 401 EGRAV-VFEGYEDYKARID--DPDLDVDEDTVLVLRNAGPKGY 440 (571)
T ss_pred EeeeE-EECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCCC
Confidence 45454 4999999999987 55532 688999999887763
No 186
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=25.46 E-value=1.2e+02 Score=19.95 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC---CCcEEEEEecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQFAN 100 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~---~rg~afV~f~~ 100 (176)
...-|||++++..+.+.-...+-+.++.-.-+-+.. ..||.|-++.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCC
Confidence 345799999999888766655555444322222222 25888887754
No 187
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=11 Score=31.59 Aligned_cols=72 Identities=6% Similarity=-0.106 Sum_probs=53.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+.+.|+..|+...++.++.-+|..||-|..+.+.+- +-.+|++-.. ..+..||..+.-..+.+..+++..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346678889999999999999999998888765441 3467776543 45566776666666777788887775
No 188
>PF14893 PNMA: PNMA
Probab=22.99 E-value=60 Score=26.33 Aligned_cols=47 Identities=11% Similarity=0.339 Sum_probs=30.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc-cCCeEEEEEeC-------CCcEEEEEecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV-------GKGCGFVQFAN 100 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~-~G~i~~i~~~~-------~rg~afV~f~~ 100 (176)
.-+.|.|.+||.++++++|++.+.. .-.+-..++.. +..-++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 4567899999999999999887754 22222222221 12457777764
No 189
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.08 E-value=1.4e+02 Score=18.07 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=25.8
Q ss_pred CCCCCCCH-HHHHHhhcccC-CeEEEEEeCCCcEEEEEec
Q 030481 62 GLDPNVTD-EDLRQPFSQYG-EIASVKIPVGKGCGFVQFA 99 (176)
Q Consensus 62 ~L~~~~~~-~~l~~~F~~~G-~i~~i~~~~~rg~afV~f~ 99 (176)
|.|..+-- .||-.+.-.|| .|.+-.+..|-.+|||.|-
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~w 45 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFW 45 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEE
Confidence 55554332 46666666787 5777777777779999885
No 190
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=21.90 E-value=92 Score=20.02 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=31.8
Q ss_pred CCHHHHHHhhcccCCeEEEE--------Ee------CCCcEEEEEecCHHHHHHHHHhhC
Q 030481 67 VTDEDLRQPFSQYGEIASVK--------IP------VGKGCGFVQFANRENAEEALHKLN 112 (176)
Q Consensus 67 ~~~~~l~~~F~~~G~i~~i~--------~~------~~rg~afV~f~~~~~a~~ai~~l~ 112 (176)
+++-+++.+++.||.-..+- ++ ..||+.=|+|-.+++.+..++.+.
T Consensus 31 Ld~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri~ 90 (91)
T PF13037_consen 31 LDHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERIK 90 (91)
T ss_pred cCceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHhc
Confidence 44556788888888543331 11 138999999999998888877653
No 191
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.78 E-value=1.2e+02 Score=22.46 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc-ccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHh
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG-------KGCGFVQFANRENAEEALHK 110 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~-~~G~i~~i~~~~~-------rg~afV~f~~~~~a~~ai~~ 110 (176)
.+++|.. .+++.|.++.. .-|.+..+.+... +|-.||+|...+.|.++++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455554 44444443332 1177888766542 57889999999999988764
No 192
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.32 E-value=2.8e+02 Score=19.03 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHhhcccC-CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 54 SNTTIFVGGLDPN---VTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 54 ~~~~l~v~~L~~~---~~~~~l~~~F~~~G-~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
+...|.|+..... .+-..+...+.+-| .+..+... .+-..|.|.+.+.-.+|.+.|....-++-.|-+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4456666655333 45567788888776 45555443 567899999999999998877655544445544443
No 193
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=21.30 E-value=2.1e+02 Score=25.26 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=27.8
Q ss_pred CcEEEEEecCHHHHHHHHHhhCCee-e-CCeEeEEeecCCCCC
Q 030481 91 KGCGFVQFANRENAEEALHKLNGTV-I-GKQSFRADYGNQWSG 131 (176)
Q Consensus 91 rg~afV~f~~~~~a~~ai~~l~g~~-~-~g~~l~v~~a~~~~~ 131 (176)
+|-|. .|+++++|.+||. ++.. | .|..|.|+|.-|+.+
T Consensus 406 ~GpA~-VF~see~a~~ai~--~g~i~i~~GdVvVIRyeGPkGg 445 (577)
T PRK13016 406 RGPAL-VFDSYPEMKAAID--DENLDVTPDHVMVLRNAGPQGG 445 (577)
T ss_pred EeeEE-EECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCCC
Confidence 45454 4999999999987 4432 2 688999999877753
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.25 E-value=1.5e+02 Score=23.16 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=25.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEe
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 88 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~ 88 (176)
.....|+|||.+++..-+..+++..-.+....+|
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 3456689999999999999988876555455444
No 195
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.16 E-value=1.4e+02 Score=16.61 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=28.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHH
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRE 102 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~ 102 (176)
..+++.+.....+..+|++++..+|.-..-.+. ...-++-+.+.+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~--~~~thvI~~~~~ 46 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS--KKTTHVIVGSDA 46 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc--CCceEEEECCCC
Confidence 467787776678889999999999863222222 344455554433
No 196
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=20.81 E-value=1.4e+02 Score=24.75 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCCHHHHHHhhcccC-CeEEEE-EeCCCcEEEEEecCHHHHHHHH
Q 030481 66 NVTDEDLRQPFSQYG-EIASVK-IPVGKGCGFVQFANRENAEEAL 108 (176)
Q Consensus 66 ~~~~~~l~~~F~~~G-~i~~i~-~~~~rg~afV~f~~~~~a~~ai 108 (176)
+....+|+.+.+-|| +|.... ...+..|-+|+|++.+.|.+.+
T Consensus 13 ~Fr~pE~eala~lF~~~i~~sq~~~t~~PF~iv~~~s~~~Ar~~~ 57 (421)
T KOG2671|consen 13 DFRLPELEALASLFGLQIDESQKLHTTSPFFIVEFESEEIARNLI 57 (421)
T ss_pred ccchHHHHHHHHHHhhhhhhhhhhcCCCceEEEEeCchHHHHHHH
Confidence 344456666666665 454443 4455789999999999998865
No 197
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.28 E-value=26 Score=23.81 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=9.0
Q ss_pred CCCeEEEcCCC
Q 030481 54 SNTTIFVGGLD 64 (176)
Q Consensus 54 ~~~~l~v~~L~ 64 (176)
....||||++|
T Consensus 91 ~~~~lyvGG~p 101 (131)
T PF00054_consen 91 VDGPLYVGGLP 101 (131)
T ss_dssp ECSEEEESSSS
T ss_pred cccCEEEccCC
Confidence 44569999999
No 198
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.28 E-value=3.2e+02 Score=19.22 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=26.8
Q ss_pred eEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 82 IASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 82 i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
|.++.+... .||.||+....+++..++..+.+..
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 666655554 7999999998888899998887654
No 199
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.21 E-value=2.2e+02 Score=24.48 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=43.4
Q ss_pred EEcCCCCCC---CHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 59 FVGGLDPNV---TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 59 ~v~~L~~~~---~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
+||||..-. ....+.++=.+||.|-.+.+-. .-.|.-.+.+.|+.++.. ++..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 478887643 3355666667899999877642 257777899999999885 7888888875
Done!