Query 030481
Match_columns 176
No_of_seqs 219 out of 1893
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 23:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sjq_A Polypyrimidine tract-bi 99.9 7.1E-22 2.4E-26 131.6 10.3 80 51-130 12-93 (105)
2 2i2y_A Fusion protein consists 99.9 2.2E-22 7.5E-27 142.6 8.0 117 2-130 31-149 (150)
3 4fxv_A ELAV-like protein 1; RN 99.9 8E-22 2.7E-26 130.5 10.1 76 53-128 17-98 (99)
4 3r27_A HnRNP L, heterogeneous 99.9 2E-21 6.8E-26 128.2 10.5 79 51-129 17-97 (100)
5 2cq1_A PTB-like protein L; RRM 99.9 7.9E-21 2.7E-25 126.1 13.3 81 50-130 10-92 (101)
6 2cpj_A Non-POU domain-containi 99.9 6.2E-21 2.1E-25 126.0 12.4 85 50-134 10-94 (99)
7 1wex_A Hypothetical protein (r 99.9 5E-21 1.7E-25 127.7 11.5 81 50-130 10-92 (104)
8 1x4a_A Splicing factor, argini 99.9 2.7E-20 9.2E-25 125.0 15.0 83 49-131 16-101 (109)
9 1why_A Hypothetical protein ri 99.9 1.2E-20 4.1E-25 124.1 12.3 80 52-131 14-95 (97)
10 2cq3_A RNA-binding protein 9; 99.9 4E-20 1.4E-24 122.8 14.8 83 49-131 9-95 (103)
11 1x4d_A Matrin 3; structural ge 99.9 6.1E-21 2.1E-25 126.7 10.6 78 53-130 13-93 (102)
12 2wbr_A GW182, gawky, LD47780P; 99.9 7.7E-21 2.6E-25 121.7 10.5 75 53-127 5-79 (89)
13 1x4c_A Splicing factor, argini 99.8 4.4E-20 1.5E-24 123.8 14.6 80 52-132 12-96 (108)
14 3md3_A Nuclear and cytoplasmic 99.8 6.6E-21 2.2E-25 135.9 11.2 102 2-128 59-166 (166)
15 2ytc_A PRE-mRNA-splicing facto 99.8 9.8E-21 3.3E-25 121.4 10.6 78 50-127 7-85 (85)
16 2dnz_A Probable RNA-binding pr 99.8 2E-20 6.8E-25 122.4 12.2 82 53-134 3-90 (95)
17 2dgx_A KIAA0430 protein; RRM d 99.8 1.6E-20 5.3E-25 123.5 11.6 80 52-131 6-92 (96)
18 2cpd_A Apobec-1 stimulating pr 99.8 5.7E-20 1.9E-24 121.3 14.2 82 48-131 8-91 (99)
19 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.3E-20 2.2E-24 121.9 14.3 82 50-131 10-95 (103)
20 2dnq_A RNA-binding protein 4B; 99.8 2.5E-20 8.5E-25 121.0 11.7 79 52-132 5-83 (90)
21 2ad9_A Polypyrimidine tract-bi 99.8 7.3E-21 2.5E-25 129.5 9.4 81 50-130 26-108 (119)
22 2dgt_A RNA-binding protein 30; 99.8 4.4E-20 1.5E-24 120.2 12.8 79 51-131 6-84 (92)
23 2yh0_A Splicing factor U2AF 65 99.8 5.1E-20 1.8E-24 135.1 14.5 121 3-130 69-195 (198)
24 1x4g_A Nucleolysin TIAR; struc 99.8 3.1E-20 1.1E-24 124.7 12.2 81 51-131 21-101 (109)
25 1x4f_A Matrin 3; structural ge 99.8 1.5E-20 5.2E-25 126.6 10.4 82 52-133 22-106 (112)
26 2d9p_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 122.9 12.3 83 49-131 9-95 (103)
27 2cph_A RNA binding motif prote 99.8 4.5E-20 1.5E-24 123.3 12.5 83 49-131 9-99 (107)
28 2la4_A Nuclear and cytoplasmic 99.8 1.3E-20 4.5E-25 124.8 9.8 78 52-129 24-101 (101)
29 2cpz_A CUG triplet repeat RNA- 99.8 7.9E-20 2.7E-24 123.8 13.7 83 49-131 19-107 (115)
30 2e5h_A Zinc finger CCHC-type a 99.8 6.2E-20 2.1E-24 119.8 12.7 78 50-127 11-94 (94)
31 4f25_A Polyadenylate-binding p 99.8 1.6E-20 5.6E-25 127.4 10.2 77 54-130 4-84 (115)
32 2g4b_A Splicing factor U2AF 65 99.8 1.9E-20 6.4E-25 134.6 11.1 98 3-127 69-172 (172)
33 1x5u_A Splicing factor 3B subu 99.8 4.8E-20 1.6E-24 122.8 12.1 83 50-132 10-98 (105)
34 3s8s_A Histone-lysine N-methyl 99.8 2.4E-20 8.2E-25 125.7 10.7 77 53-129 4-86 (110)
35 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-19 4.7E-24 122.5 14.5 83 49-131 9-97 (115)
36 2cq0_A Eukaryotic translation 99.8 6E-20 2E-24 122.0 12.4 81 51-131 11-97 (103)
37 1whw_A Hypothetical protein ri 99.8 6.4E-20 2.2E-24 120.9 12.5 80 52-131 5-90 (99)
38 2cpi_A CCR4-NOT transcription 99.8 4.6E-20 1.6E-24 124.3 11.9 84 51-134 11-106 (111)
39 2do4_A Squamous cell carcinoma 99.8 8.5E-20 2.9E-24 120.6 13.0 82 50-131 12-98 (100)
40 3pgw_A U1-A; protein-RNA compl 99.8 4.5E-20 1.5E-24 142.8 13.4 77 51-127 203-281 (282)
41 1u6f_A Tcubp1, RNA-binding pro 99.8 6.4E-20 2.2E-24 128.1 12.7 85 48-132 35-125 (139)
42 2dgs_A DAZ-associated protein 99.8 9.5E-20 3.2E-24 120.2 12.7 80 51-131 6-91 (99)
43 2dgu_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 119.9 13.7 79 52-132 8-86 (103)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.9E-20 2.4E-24 121.4 11.7 80 52-131 9-94 (102)
45 4f02_A Polyadenylate-binding p 99.8 7E-21 2.4E-25 142.1 7.6 104 1-129 74-181 (213)
46 2cqd_A RNA-binding region cont 99.8 3.2E-19 1.1E-23 120.9 15.0 82 49-131 11-98 (116)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.3E-20 1.1E-24 119.4 9.6 77 53-129 4-86 (87)
48 1x5s_A Cold-inducible RNA-bind 99.8 5E-20 1.7E-24 122.1 10.7 81 52-132 9-95 (102)
49 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.3E-20 1.8E-24 131.1 11.5 82 51-132 35-122 (156)
50 2cqc_A Arginine/serine-rich sp 99.8 7.8E-20 2.7E-24 119.5 11.4 79 50-128 10-94 (95)
51 2dnp_A RNA-binding protein 14; 99.8 9.7E-20 3.3E-24 118.1 11.7 77 52-130 6-82 (90)
52 2fy1_A RNA-binding motif prote 99.8 1.3E-19 4.6E-24 123.1 12.8 79 53-131 5-88 (116)
53 1wf1_A RNA-binding protein RAL 99.8 1E-19 3.5E-24 122.3 11.9 76 53-130 25-101 (110)
54 2cpe_A RNA-binding protein EWS 99.8 1.3E-19 4.4E-24 122.3 12.4 82 50-131 10-105 (113)
55 3md1_A Nuclear and cytoplasmic 99.8 6.4E-20 2.2E-24 117.0 10.3 76 55-130 1-82 (83)
56 2dgv_A HnRNP M, heterogeneous 99.8 4.5E-20 1.5E-24 120.0 9.7 80 52-131 5-88 (92)
57 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6E-20 2.1E-24 117.6 10.2 76 52-127 4-85 (85)
58 2err_A Ataxin-2-binding protei 99.8 4.8E-20 1.6E-24 123.9 10.1 83 47-129 21-107 (109)
59 1x5p_A Negative elongation fac 99.8 5.1E-19 1.7E-23 116.3 14.6 79 50-130 10-88 (97)
60 2lxi_A RNA-binding protein 10; 99.8 1.6E-20 5.6E-25 122.3 7.2 76 55-130 1-84 (91)
61 2dnm_A SRP46 splicing factor; 99.8 1E-19 3.5E-24 120.8 11.2 80 51-130 9-94 (103)
62 2qfj_A FBP-interacting repress 99.8 3.3E-20 1.1E-24 137.9 9.7 113 2-130 88-206 (216)
63 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-19 7.1E-24 119.6 12.6 80 51-132 11-97 (104)
64 2do0_A HnRNP M, heterogeneous 99.8 5.5E-19 1.9E-23 119.3 14.8 79 51-129 11-94 (114)
65 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-19 5.9E-24 120.1 12.1 79 52-130 12-98 (105)
66 1fje_B Nucleolin RBD12, protei 99.8 8.4E-20 2.9E-24 131.7 11.4 102 3-130 72-175 (175)
67 1b7f_A Protein (SXL-lethal pro 99.8 4.7E-20 1.6E-24 131.8 10.0 98 2-126 63-168 (168)
68 2cpf_A RNA binding motif prote 99.8 1.1E-19 3.6E-24 119.7 10.8 79 53-131 3-90 (98)
69 2khc_A Testis-specific RNP-typ 99.8 1.4E-19 4.9E-24 123.0 11.8 79 49-127 34-118 (118)
70 2jvo_A Nucleolar protein 3; nu 99.8 1E-19 3.4E-24 122.2 10.9 81 48-130 24-104 (108)
71 2adc_A Polypyrimidine tract-bi 99.8 1.1E-19 3.6E-24 137.1 12.2 128 2-129 90-228 (229)
72 1x4h_A RNA-binding protein 28; 99.8 3.1E-19 1.1E-23 119.9 13.3 81 50-130 10-102 (111)
73 1x5t_A Splicing factor 3B subu 99.8 9.9E-20 3.4E-24 119.3 10.5 79 53-131 3-88 (96)
74 1qm9_A Polypyrimidine tract-bi 99.8 1.1E-19 3.9E-24 133.6 11.9 128 2-129 59-197 (198)
75 2dng_A Eukaryotic translation 99.8 3.1E-19 1.1E-23 118.5 12.8 80 50-131 10-95 (103)
76 2x1f_A MRNA 3'-END-processing 99.8 1.2E-19 4E-24 119.1 10.5 77 54-130 1-83 (96)
77 2ywk_A Putative RNA-binding pr 99.8 8.7E-20 3E-24 119.3 9.7 79 50-128 11-94 (95)
78 2xnq_A Nuclear polyadenylated 99.8 2E-19 6.7E-24 118.5 11.5 81 48-130 15-96 (97)
79 1p27_B RNA-binding protein 8A; 99.8 7.4E-20 2.5E-24 122.1 9.3 80 51-130 19-104 (106)
80 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-19 5.6E-24 120.4 10.8 82 50-131 8-98 (106)
81 2la6_A RNA-binding protein FUS 99.8 1.2E-19 4.2E-24 119.7 10.1 80 48-127 6-99 (99)
82 2kxn_B Transformer-2 protein h 99.8 1.6E-19 5.4E-24 124.9 10.6 82 49-130 40-127 (129)
83 3ex7_B RNA-binding protein 8A; 99.8 8.6E-20 3E-24 125.4 9.2 83 49-131 16-104 (126)
84 2cqh_A IGF-II mRNA-binding pro 99.8 7.7E-20 2.6E-24 119.2 8.4 79 52-131 5-85 (93)
85 2jrs_A RNA-binding protein 39; 99.8 1.6E-19 5.4E-24 121.2 10.2 82 49-130 20-107 (108)
86 2fc9_A NCL protein; structure 99.8 6.1E-19 2.1E-23 116.7 12.8 81 51-131 11-93 (101)
87 2lkz_A RNA-binding protein 5; 99.8 1E-19 3.4E-24 119.4 8.5 76 53-128 7-94 (95)
88 1oo0_B CG8781-PA, drosophila Y 99.8 2.2E-19 7.6E-24 120.6 10.4 81 50-130 21-107 (110)
89 1fxl_A Paraneoplastic encephal 99.8 9.4E-20 3.2E-24 130.0 9.0 98 2-126 62-167 (167)
90 1whx_A Hypothetical protein ri 99.8 4.3E-20 1.5E-24 124.6 6.8 76 54-129 9-84 (111)
91 2dh8_A DAZ-associated protein 99.8 3.1E-19 1.1E-23 118.9 10.9 81 50-131 11-97 (105)
92 1x4b_A Heterogeneous nuclear r 99.8 4E-19 1.4E-23 120.5 11.5 79 52-131 24-108 (116)
93 2kvi_A Nuclear polyadenylated 99.8 8.3E-20 2.8E-24 119.9 7.9 78 52-131 7-85 (96)
94 2cq2_A Hypothetical protein LO 99.8 1.4E-19 4.9E-24 122.1 9.1 79 52-130 22-107 (114)
95 2jvr_A Nucleolar protein 3; RN 99.8 1.5E-19 5.2E-24 121.8 9.2 78 52-129 25-105 (111)
96 2cqp_A RNA-binding protein 12; 99.8 1.4E-19 4.7E-24 119.1 8.7 80 51-130 11-96 (98)
97 1l3k_A Heterogeneous nuclear r 99.8 2.8E-19 9.6E-24 130.9 11.3 107 4-132 74-186 (196)
98 2hvz_A Splicing factor, argini 99.8 1.7E-19 6E-24 119.3 9.2 76 56-131 1-77 (101)
99 2dhg_A TRNA selenocysteine ass 99.8 2.7E-19 9.4E-24 118.9 10.2 79 52-130 6-91 (104)
100 2div_A TRNA selenocysteine ass 99.8 2.6E-19 8.9E-24 118.0 10.0 79 52-130 6-95 (99)
101 2kt5_A RNA and export factor-b 99.8 8.7E-19 3E-23 120.2 12.8 80 51-130 31-115 (124)
102 2a3j_A U1 small nuclear ribonu 99.8 2.5E-19 8.7E-24 123.5 9.9 80 51-130 25-111 (127)
103 2fc8_A NCL protein; structure 99.8 8.1E-19 2.8E-23 116.2 12.0 81 50-133 10-96 (102)
104 4a8x_A RNA-binding protein wit 99.8 4.4E-19 1.5E-23 114.2 10.2 77 54-130 3-86 (88)
105 3ulh_A THO complex subunit 4; 99.8 4.2E-19 1.4E-23 118.6 10.2 77 51-127 25-106 (107)
106 1nu4_A U1A RNA binding domain; 99.8 3.4E-19 1.2E-23 116.9 9.5 79 52-130 5-90 (97)
107 2e5j_A Methenyltetrahydrofolat 99.8 9.7E-19 3.3E-23 114.9 11.6 79 51-130 15-95 (97)
108 2cq4_A RNA binding motif prote 99.8 3.1E-19 1.1E-23 120.6 9.4 78 51-129 21-104 (114)
109 3ucg_A Polyadenylate-binding p 99.8 6.2E-19 2.1E-23 113.8 10.1 76 54-130 5-86 (89)
110 1x5o_A RNA binding motif, sing 99.8 1.6E-18 5.5E-23 117.0 12.5 81 50-130 20-113 (114)
111 2cpx_A Hypothetical protein FL 99.8 1.5E-18 5E-23 117.4 12.2 81 51-131 21-107 (115)
112 2m2b_A RNA-binding protein 10; 99.8 5.8E-19 2E-23 122.3 10.3 82 49-131 17-110 (131)
113 2ghp_A U4/U6 snRNA-associated 99.8 3.6E-19 1.2E-23 138.3 10.3 107 2-129 177-291 (292)
114 3smz_A Protein raver-1, ribonu 99.8 3.7E-19 1.3E-23 137.8 10.0 105 2-130 155-265 (284)
115 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.8E-18 6.2E-23 120.6 12.6 77 50-126 58-140 (140)
116 2dgw_A Probable RNA-binding pr 99.8 1.5E-18 5.2E-23 112.6 11.2 77 52-130 7-88 (91)
117 2jwn_A Embryonic polyadenylate 99.8 2E-19 7E-24 123.2 7.4 76 54-130 35-116 (124)
118 2cqg_A TDP-43, TAR DNA-binding 99.8 3.7E-18 1.3E-22 113.2 13.3 80 50-131 10-95 (103)
119 3p5t_L Cleavage and polyadenyl 99.8 7.9E-20 2.7E-24 118.6 4.8 75 56-130 2-84 (90)
120 1wg1_A KIAA1579 protein, homol 99.8 6.5E-19 2.2E-23 113.8 9.1 75 54-129 4-78 (88)
121 1p1t_A Cleavage stimulation fa 99.8 1.1E-19 3.8E-24 120.8 5.5 79 52-130 5-89 (104)
122 1x4e_A RNA binding motif, sing 99.8 2E-19 6.8E-24 115.3 6.5 75 53-127 3-83 (85)
123 3beg_B Splicing factor, argini 99.8 5.4E-19 1.8E-23 119.8 8.6 78 53-131 14-96 (115)
124 3s7r_A Heterogeneous nuclear r 99.8 1.5E-18 5.2E-23 111.6 10.3 75 51-126 7-87 (87)
125 2e5i_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 116.8 12.9 76 55-130 25-103 (124)
126 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-18 3.9E-23 118.0 10.1 77 53-129 6-85 (115)
127 3tyt_A Heterogeneous nuclear r 99.8 3E-19 1E-23 132.8 7.7 126 1-126 59-204 (205)
128 1s79_A Lupus LA protein; RRM, 99.8 6.8E-19 2.3E-23 117.2 8.7 76 52-128 8-88 (103)
129 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.3E-19 1.1E-23 117.9 7.0 80 49-130 13-99 (100)
130 2rs2_A Musashi-1, RNA-binding 99.8 2.1E-18 7.1E-23 115.9 10.9 82 48-130 18-105 (109)
131 2dis_A Unnamed protein product 99.8 9.6E-19 3.3E-23 117.2 9.2 78 53-130 6-93 (109)
132 3ns6_A Eukaryotic translation 99.8 1.5E-19 5.2E-24 119.6 5.1 75 54-128 5-92 (100)
133 2nlw_A Eukaryotic translation 99.8 1.8E-18 6E-23 115.4 10.3 78 52-129 12-100 (105)
134 3n9u_C Cleavage and polyadenyl 99.8 1.1E-18 3.6E-23 124.5 9.6 76 54-129 54-137 (156)
135 2ek1_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 116.6 6.3 76 53-128 13-94 (95)
136 1sjr_A Polypyrimidine tract-bi 99.8 2.6E-18 8.9E-23 122.7 10.8 79 52-130 43-125 (164)
137 2lea_A Serine/arginine-rich sp 99.8 6.1E-19 2.1E-23 122.9 7.4 82 49-130 41-128 (135)
138 1fjc_A Nucleolin RBD2, protein 99.8 2.6E-18 9E-23 112.5 9.8 80 51-131 12-93 (96)
139 2kn4_A Immunoglobulin G-bindin 99.8 4.9E-18 1.7E-22 120.9 12.0 80 51-130 66-151 (158)
140 2cpy_A RNA-binding protein 12; 99.8 2.7E-18 9.4E-23 116.1 10.0 78 51-129 11-94 (114)
141 3q2s_C Cleavage and polyadenyl 99.8 8E-19 2.7E-23 132.6 7.8 74 54-127 67-148 (229)
142 1wg5_A Heterogeneous nuclear r 99.8 7.3E-18 2.5E-22 112.2 11.5 79 51-130 11-95 (104)
143 2hzc_A Splicing factor U2AF 65 99.8 2.7E-18 9.3E-23 110.3 9.0 72 53-125 4-86 (87)
144 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.1E-18 1E-22 123.1 10.2 82 49-130 66-153 (165)
145 2bz2_A Negative elongation fac 99.8 2.9E-18 9.8E-23 117.3 9.5 78 51-130 35-112 (121)
146 2lcw_A RNA-binding protein FUS 99.6 3.7E-20 1.3E-24 125.6 0.0 82 52-133 4-99 (116)
147 3nmr_A Cugbp ELAV-like family 99.8 1.4E-18 4.7E-23 124.9 8.2 100 2-127 65-175 (175)
148 2e44_A Insulin-like growth fac 99.8 3.8E-18 1.3E-22 111.7 9.6 78 52-129 12-92 (96)
149 2e5g_A U6 snRNA-specific termi 99.8 1.2E-17 4.2E-22 109.0 12.0 77 53-130 6-83 (94)
150 1wez_A HnRNP H', FTP-3, hetero 99.8 5E-18 1.7E-22 112.7 10.1 78 51-130 11-93 (102)
151 2db1_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 116.2 9.3 76 52-128 14-97 (118)
152 2mss_A Protein (musashi1); RNA 99.8 1.1E-18 3.7E-23 109.3 6.1 69 57-126 1-75 (75)
153 3zzy_A Polypyrimidine tract-bi 99.8 5.1E-18 1.8E-22 116.9 10.0 78 53-130 26-107 (130)
154 2cjk_A Nuclear polyadenylated 99.8 5.6E-19 1.9E-23 126.2 5.0 96 6-129 65-166 (167)
155 3tyt_A Heterogeneous nuclear r 99.8 7.8E-18 2.7E-22 125.1 11.2 76 54-129 3-80 (205)
156 2diu_A KIAA0430 protein; struc 99.7 6.6E-18 2.3E-22 109.2 9.1 74 54-131 7-86 (96)
157 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-18 7.1E-23 108.4 6.1 70 56-126 1-76 (77)
158 2krb_A Eukaryotic translation 99.7 2.2E-18 7.5E-23 109.5 6.2 70 55-124 1-81 (81)
159 1wf0_A TDP-43, TAR DNA-binding 99.7 6.7E-18 2.3E-22 108.9 8.6 77 54-132 4-81 (88)
160 2ki2_A SS-DNA binding protein 99.7 6.5E-19 2.2E-23 114.1 3.7 74 56-130 2-81 (90)
161 1wel_A RNA-binding protein 12; 99.7 2.8E-18 9.7E-23 117.7 7.1 76 52-128 22-103 (124)
162 3d2w_A TAR DNA-binding protein 99.7 1.4E-17 4.7E-22 107.9 9.7 76 51-130 7-85 (89)
163 2hgl_A HNRPF protein, heteroge 99.7 4.5E-18 1.5E-22 118.5 7.7 78 50-128 39-124 (136)
164 2dnn_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 111.5 10.1 74 53-128 14-92 (109)
165 3u1l_A PRE-mRNA-splicing facto 99.7 3.7E-18 1.3E-22 129.2 7.6 80 52-131 131-231 (240)
166 1fj7_A Nucleolin RBD1, protein 99.7 2.5E-17 8.7E-22 108.8 10.5 77 52-130 14-96 (101)
167 3pgw_S U1-70K; protein-RNA com 99.7 3.8E-17 1.3E-21 133.9 12.9 78 52-129 99-182 (437)
168 2lmi_A GRSF-1, G-rich sequence 99.7 5.8E-18 2E-22 113.2 6.3 76 52-128 8-91 (107)
169 2hgn_A Heterogeneous nuclear r 99.7 3.4E-18 1.2E-22 119.5 4.8 78 51-130 42-124 (139)
170 4f02_A Polyadenylate-binding p 99.7 3.6E-17 1.2E-21 121.9 10.5 77 53-129 13-95 (213)
171 2f3j_A RNA and export factor b 99.7 2.4E-17 8.4E-22 119.8 9.3 79 51-129 84-167 (177)
172 3smz_A Protein raver-1, ribonu 99.7 3.2E-17 1.1E-21 126.9 10.1 96 2-130 75-176 (284)
173 3egn_A RNA-binding protein 40; 99.7 2.6E-17 8.8E-22 115.5 8.5 79 52-130 42-131 (143)
174 1iqt_A AUF1, heterogeneous nuc 99.7 7.7E-18 2.6E-22 105.3 4.8 69 57-126 1-75 (75)
175 2hgm_A HNRPF protein, heteroge 99.7 4.8E-17 1.6E-21 111.8 8.1 76 51-128 38-120 (126)
176 1fxl_A Paraneoplastic encephal 99.7 1.4E-16 4.7E-21 113.4 10.8 76 55-130 2-83 (167)
177 3sde_A Paraspeckle component 1 99.7 4.5E-17 1.5E-21 125.0 8.7 95 2-129 76-179 (261)
178 2xs2_A Deleted in azoospermia- 99.7 1.8E-17 6.3E-22 109.6 5.5 77 52-130 6-87 (102)
179 3sde_A Paraspeckle component 1 99.7 2.3E-16 7.7E-21 121.1 11.9 78 51-128 18-95 (261)
180 2ghp_A U4/U6 snRNA-associated 99.7 1.5E-16 5E-21 123.6 10.9 94 3-130 99-198 (292)
181 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-16 4.9E-21 113.6 9.9 77 54-130 2-84 (168)
182 2dha_A FLJ20171 protein; RRM d 99.7 5.2E-17 1.8E-21 111.3 6.1 75 53-128 21-104 (123)
183 3pgw_A U1-A; protein-RNA compl 99.7 3.6E-16 1.2E-20 120.8 11.1 80 51-130 5-91 (282)
184 2adc_A Polypyrimidine tract-bi 99.7 1.9E-16 6.4E-21 119.3 9.1 79 51-129 30-110 (229)
185 3md3_A Nuclear and cytoplasmic 99.7 3.3E-16 1.1E-20 111.3 9.4 75 56-130 1-80 (166)
186 1l3k_A Heterogeneous nuclear r 99.7 4E-16 1.4E-20 114.0 9.8 79 51-130 9-93 (196)
187 2dit_A HIV TAT specific factor 99.7 1.7E-15 5.7E-20 102.0 12.1 80 51-130 11-103 (112)
188 2pe8_A Splicing factor 45; RRM 99.7 1.1E-15 3.8E-20 101.8 10.3 76 53-128 6-93 (105)
189 2g4b_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 109.5 10.2 76 54-130 3-89 (172)
190 1qm9_A Polypyrimidine tract-bi 99.6 3.2E-16 1.1E-20 115.1 7.4 76 54-129 2-79 (198)
191 2qfj_A FBP-interacting repress 99.6 8.6E-16 2.9E-20 113.9 9.8 77 53-129 26-108 (216)
192 2voo_A Lupus LA protein; RNA-b 99.6 1.3E-15 4.5E-20 112.1 10.0 76 54-130 108-188 (193)
193 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-15 5.1E-20 102.6 9.3 72 53-127 6-86 (114)
194 2yh0_A Splicing factor U2AF 65 99.6 1.5E-15 5.1E-20 111.1 10.1 76 54-130 3-89 (198)
195 2j8a_A Histone-lysine N-methyl 99.6 7.6E-16 2.6E-20 105.0 7.4 72 56-127 3-94 (136)
196 3nmr_A Cugbp ELAV-like family 99.6 2.9E-15 1E-19 107.3 7.9 77 54-130 2-89 (175)
197 2cjk_A Nuclear polyadenylated 99.6 4.7E-15 1.6E-19 105.6 8.5 73 54-128 2-80 (167)
198 3tht_A Alkylated DNA repair pr 99.6 6.8E-15 2.3E-19 116.7 9.6 77 51-127 14-97 (345)
199 1fje_B Nucleolin RBD12, protei 99.6 1.3E-14 4.6E-19 104.2 10.2 79 51-130 9-92 (175)
200 3v4m_A Splicing factor U2AF 65 99.6 1.4E-14 4.9E-19 96.4 8.5 75 54-128 4-96 (105)
201 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.2E-13 4.1E-18 91.1 12.4 75 55-131 10-92 (100)
202 1jmt_A Splicing factor U2AF 35 99.5 5.6E-15 1.9E-19 98.2 3.7 67 60-126 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.5 9.4E-14 3.2E-18 94.3 8.6 74 54-127 19-107 (118)
204 3s6e_A RNA-binding protein 39; 99.5 2E-13 7E-18 92.1 9.9 75 53-127 5-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 2.1E-12 7.1E-17 82.7 8.4 73 53-128 5-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.4 4.7E-12 1.6E-16 85.8 9.7 77 51-127 14-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 2.3E-11 7.8E-16 78.2 6.9 73 52-127 12-93 (95)
208 2l9w_A U4/U6 snRNA-associated- 99.0 3.3E-09 1.1E-13 69.6 10.1 71 54-124 20-95 (117)
209 3dxb_A Thioredoxin N-terminall 99.0 1E-09 3.5E-14 81.8 7.0 61 67-127 141-211 (222)
210 1wey_A Calcipressin 1; structu 98.3 1.9E-06 6.4E-11 56.2 7.2 76 54-129 4-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 3.1E-05 1.1E-09 50.3 9.5 74 54-130 7-85 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.9 6.9E-05 2.4E-09 50.1 7.5 72 52-125 21-93 (119)
213 4f25_A Polyadenylate-binding p 97.8 3.1E-06 1.1E-10 56.4 0.5 52 1-71 62-113 (115)
214 1uw4_A UPF3X; nonsense mediate 97.8 0.00013 4.4E-09 46.6 7.2 62 56-117 2-71 (91)
215 1whv_A Poly(A)-specific ribonu 97.3 0.0015 5.1E-08 41.9 8.0 57 53-112 14-70 (100)
216 3p3d_A Nucleoporin 53; structu 97.2 0.00046 1.6E-08 46.7 4.3 72 54-127 6-97 (132)
217 2l08_A Regulator of nonsense t 97.1 0.00088 3E-08 43.1 5.3 64 54-117 8-79 (97)
218 3pq1_A Poly(A) RNA polymerase; 97.1 0.00023 7.8E-09 58.4 3.0 55 55-110 53-108 (464)
219 3ctr_A Poly(A)-specific ribonu 97.0 0.0016 5.4E-08 41.9 5.2 55 55-112 6-60 (101)
220 2hvz_A Splicing factor, argini 96.8 0.00029 1E-08 45.3 1.1 47 2-65 55-101 (101)
221 2i2y_A Fusion protein consists 95.7 0.0029 9.8E-08 43.6 1.2 38 91-129 13-51 (150)
222 3lqv_A PRE-mRNA branch site pr 95.5 0.00056 1.9E-08 45.0 -3.1 45 2-81 65-109 (115)
223 2kn4_A Immunoglobulin G-bindin 94.6 0.016 5.6E-07 40.0 2.2 24 91-114 13-36 (158)
224 2diu_A KIAA0430 protein; struc 94.4 0.0098 3.4E-07 38.1 0.7 25 1-25 63-87 (96)
225 2dgu_A Heterogeneous nuclear r 92.6 0.082 2.8E-06 33.6 2.8 24 2-25 63-86 (103)
226 1x5t_A Splicing factor 3B subu 91.1 0.11 3.7E-06 32.4 2.0 25 1-25 65-89 (96)
227 2dgo_A Cytotoxic granule-assoc 91.1 0.17 5.8E-06 32.7 3.1 25 1-25 74-98 (115)
228 2fy1_A RNA-binding motif prote 90.7 0.11 3.7E-06 34.0 1.8 24 2-25 66-89 (116)
229 3d45_A Poly(A)-specific ribonu 90.1 1.5 5E-05 36.4 8.5 56 55-113 440-495 (507)
230 2cqh_A IGF-II mRNA-binding pro 90.0 0.079 2.7E-06 32.9 0.7 25 1-25 61-86 (93)
231 2dnz_A Probable RNA-binding pr 90.0 0.08 2.7E-06 33.0 0.7 24 2-25 65-88 (95)
232 2dnq_A RNA-binding protein 4B; 89.6 0.1 3.4E-06 32.3 0.9 24 2-25 60-83 (90)
233 1whw_A Hypothetical protein ri 89.4 0.16 5.4E-06 31.9 1.8 24 2-25 68-91 (99)
234 2dnp_A RNA-binding protein 14; 89.3 0.099 3.4E-06 32.3 0.7 24 2-25 61-84 (90)
235 2dgt_A RNA-binding protein 30; 89.0 0.1 3.5E-06 32.4 0.6 24 2-25 62-85 (92)
236 2dhg_A TRNA selenocysteine ass 88.7 0.19 6.4E-06 31.8 1.7 24 2-25 69-93 (104)
237 2wbr_A GW182, gawky, LD47780P; 88.3 0.09 3.1E-06 33.1 0.0 20 1-20 60-79 (89)
238 2ki2_A SS-DNA binding protein 88.0 0.11 3.7E-06 32.0 0.2 25 1-25 59-83 (90)
239 2x1f_A MRNA 3'-END-processing 87.8 0.11 3.9E-06 32.4 0.3 24 2-25 62-85 (96)
240 2e5g_A U6 snRNA-specific termi 87.2 0.32 1.1E-05 30.1 2.1 24 1-25 62-85 (94)
241 1wg1_A KIAA1579 protein, homol 87.1 0.14 4.6E-06 31.6 0.3 22 2-23 58-79 (88)
242 3s8s_A Histone-lysine N-methyl 87.1 0.13 4.4E-06 33.4 0.2 24 1-24 65-88 (110)
243 3s6e_A RNA-binding protein 39; 86.9 0.1 3.5E-06 34.3 -0.4 22 1-22 72-93 (114)
244 1x4c_A Splicing factor, argini 86.5 0.17 5.9E-06 32.4 0.6 25 1-25 67-96 (108)
245 1p1t_A Cleavage stimulation fa 86.4 0.2 7E-06 31.6 0.9 24 2-25 68-91 (104)
246 2lcw_A RNA-binding protein FUS 86.3 0.14 4.7E-06 33.3 0.0 25 1-25 74-98 (116)
247 2do0_A HnRNP M, heterogeneous 86.1 0.51 1.7E-05 30.2 2.7 24 2-25 74-97 (114)
248 2m2b_A RNA-binding protein 10; 85.5 0.44 1.5E-05 31.6 2.2 25 1-25 83-111 (131)
249 2cqd_A RNA-binding region cont 85.4 0.95 3.2E-05 29.1 3.8 23 1-24 76-98 (116)
250 3ex7_B RNA-binding protein 8A; 85.3 0.16 5.5E-06 33.4 -0.1 24 2-25 82-105 (126)
251 2kvi_A Nuclear polyadenylated 85.1 0.13 4.3E-06 32.3 -0.6 24 2-25 63-86 (96)
252 2dis_A Unnamed protein product 84.1 0.49 1.7E-05 30.0 1.9 25 1-25 69-95 (109)
253 1whx_A Hypothetical protein ri 81.9 0.22 7.6E-06 32.2 -0.5 23 1-23 63-85 (111)
254 1h2v_Z 20 kDa nuclear CAP bind 81.3 0.38 1.3E-05 32.9 0.5 25 1-25 98-122 (156)
255 2e5i_A Heterogeneous nuclear r 79.9 0.42 1.4E-05 31.9 0.3 25 1-25 79-105 (124)
256 1sjr_A Polypyrimidine tract-bi 79.9 0.5 1.7E-05 33.1 0.8 25 1-25 101-127 (164)
257 3zzy_A Polypyrimidine tract-bi 78.4 0.41 1.4E-05 32.2 -0.1 25 1-25 83-109 (130)
258 2g0c_A ATP-dependent RNA helic 77.0 7.3 0.00025 22.9 5.4 68 57-127 2-75 (76)
259 3q2s_C Cleavage and polyadenyl 76.5 0.9 3.1E-05 33.4 1.3 22 1-22 129-150 (229)
260 1sjq_A Polypyrimidine tract-bi 72.5 0.92 3.1E-05 29.3 0.4 21 5-25 75-95 (105)
261 3pgw_S U1-70K; protein-RNA com 69.8 2.8 9.7E-05 33.9 2.9 26 1-26 161-186 (437)
262 1wex_A Hypothetical protein (r 69.1 1.3 4.5E-05 28.2 0.6 23 3-25 70-94 (104)
263 2db1_A Heterogeneous nuclear r 67.3 1.7 5.8E-05 28.2 0.9 20 4-23 80-99 (118)
264 3beg_B Splicing factor, argini 63.0 1.8 6.1E-05 27.9 0.3 23 1-23 68-95 (115)
265 1wel_A RNA-binding protein 12; 60.2 3.3 0.00011 26.8 1.3 20 3-22 85-104 (124)
266 4eyt_A Telomerase associated p 60.0 29 0.00098 21.6 7.4 58 53-112 10-67 (129)
267 3ts2_A Protein LIN-28 homolog 46.9 4.4 0.00015 27.7 0.2 28 70-99 2-29 (148)
268 3fry_A Probable copper-exporti 44.8 40 0.0014 18.9 5.1 55 55-110 6-60 (73)
269 4e8u_A Putative uncharacterize 39.6 76 0.0026 22.2 5.6 52 57-108 14-80 (172)
270 3h7h_B Transcription elongatio 33.6 52 0.0018 20.9 3.7 35 81-115 40-75 (106)
271 4a4j_A Pacszia, cation-transpo 30.9 67 0.0023 17.4 4.7 54 57-110 5-61 (69)
272 2e5p_A Protein PHF1, PHD finge 30.1 55 0.0019 19.0 3.0 19 80-100 28-46 (68)
273 3lpe_A Putative transcription 27.3 1.1E+02 0.0037 18.6 6.3 35 81-115 39-74 (92)
274 2eqj_A Metal-response element- 22.8 88 0.003 18.1 3.0 13 88-100 38-50 (66)
275 2m0o_A PHD finger protein 1; t 22.4 89 0.003 18.7 3.0 20 80-101 45-64 (79)
276 3dxs_X Copper-transporting ATP 21.1 1.1E+02 0.0039 16.7 5.6 54 57-110 5-62 (74)
277 3fut_A Dimethyladenosine trans 20.5 82 0.0028 23.4 3.3 32 56-88 111-142 (271)
278 4bby_A Alkyldihydroxyacetoneph 20.3 78 0.0027 26.9 3.4 49 63-111 351-408 (658)
No 1
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.1e-22 Score=131.58 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCC--eeeCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g--~~~~g~~l~v~~a~~ 128 (176)
.+.+.++|||+|||+++++++|+++|++||.|.+|.|+++||||||+|++.++|++|++.|++ ..|.|+.|+|.|++.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 345789999999999999999999999999999999999999999999999999999998864 789999999999986
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
+.
T Consensus 92 ~~ 93 (105)
T 1sjq_A 92 KE 93 (105)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 2
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=2.2e-22 Score=142.60 Aligned_cols=117 Identities=20% Similarity=0.299 Sum_probs=94.5
Q ss_pred Ccc-CCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 2 TEM-NGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 2 ~~m-ng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
++| ||.+|+| .|+++++..+........ ..............++|||+|||.++++++|+++|++||
T Consensus 31 ~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 31 KQYANDNGVDG-EWTYDDATKTFTVTEGSH-----------HHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp HHHHHHHTCCC-EEEEETTTTEEEEECSSS-----------SCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred HHHhcCCCCCC-ceecccccCccccccccc-----------cccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 456 8899999 999998865432110000 001112233455789999999999999999999999999
Q ss_pred CeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 81 ~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
.|..|.++.+ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|+++..
T Consensus 99 ~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 99 PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999987 8999999999999999999999999999999999998753
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=130.50 Aligned_cols=76 Identities=32% Similarity=0.553 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
..+++|||+|||.++++++|+++|++||.|..++++++ +|||||+|.+.++|++|++.|||..|.|+.|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999865 589999999999999999999999999999999999
Q ss_pred CC
Q 030481 127 NQ 128 (176)
Q Consensus 127 ~~ 128 (176)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 4
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=128.24 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCee--eCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV--IGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~--~~g~~l~v~~a~~ 128 (176)
..+++++|||+|||.++++++|+++|++||.|.++.++++||+|||+|++.++|.+|++.|++.. +.|++|+|.|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 44578999999999999999999999999999999999999999999999999999999998875 7899999999986
Q ss_pred C
Q 030481 129 W 129 (176)
Q Consensus 129 ~ 129 (176)
+
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 4
No 5
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.9e-21 Score=126.08 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhh--CCeeeCCeEeEEeecC
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL--NGTVIGKQSFRADYGN 127 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l--~g~~~~g~~l~v~~a~ 127 (176)
....++++|||+|||+++++++|+++|++||.|..|.++++||||||+|.+.++|.+|++.| ++..+.|++|+|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 34457889999999999999999999999999999999999999999999999999999977 5678999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
...
T Consensus 90 ~~~ 92 (101)
T 2cq1_A 90 HKE 92 (101)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
No 6
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.2e-21 Score=125.95 Aligned_cols=85 Identities=27% Similarity=0.489 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
....+.++|||+|||.++++++|+++|++||.|..|.+.++++||||+|.+.++|++|++.|++..|.|+.|+|.|+++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q 030481 130 SGAYY 134 (176)
Q Consensus 130 ~~~~~ 134 (176)
.....
T Consensus 90 ~~~~~ 94 (99)
T 2cpj_A 90 ASLTS 94 (99)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 64433
No 7
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5e-21 Score=127.73 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCe--eeCCeEeEEeecC
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT--VIGKQSFRADYGN 127 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~--~~~g~~l~v~~a~ 127 (176)
....++++|||+|||+++++++|+++|++||.|..|.++++|+||||+|++.++|.+|++.|++. .|.|++|+|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 34457899999999999999999999999999999999999999999999999999999988654 5999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
.+.
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 664
No 8
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.7e-20 Score=124.95 Aligned_cols=83 Identities=23% Similarity=0.480 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.....+.++|||+|||.++++++|+++|++||.|..|.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344567899999999999999999999999999999999775 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987654
No 9
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=124.10 Aligned_cols=80 Identities=25% Similarity=0.547 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeC--CeEeEEeecCCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSFRADYGNQW 129 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~--g~~l~v~~a~~~ 129 (176)
..+.++|||+|||.++++++|+++|++||.|..|.+..+++||||+|.+.++|++|++.||+..+. |+.|+|.|++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999 999999999977
Q ss_pred CC
Q 030481 130 SG 131 (176)
Q Consensus 130 ~~ 131 (176)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 10
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-20 Score=122.81 Aligned_cols=83 Identities=35% Similarity=0.527 Sum_probs=76.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.......++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999999986 7899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 030481 125 YGNQWSG 131 (176)
Q Consensus 125 ~a~~~~~ 131 (176)
++++...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9987753
No 11
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-21 Score=126.73 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCe--eeCCeEeEEeecCCC
Q 030481 53 SSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT--VIGKQSFRADYGNQW 129 (176)
Q Consensus 53 ~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~--~~~g~~l~v~~a~~~ 129 (176)
.++++|||+|||+ ++++++|+++|++||.|.+|.|+++++||||+|++.++|.+|++.|++. .|.|++|+|.||+..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 4688999999999 9999999999999999999999999999999999999999999998864 599999999999865
Q ss_pred C
Q 030481 130 S 130 (176)
Q Consensus 130 ~ 130 (176)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 12
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=7.7e-21 Score=121.72 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
..+..|||+||++.++|++|+++|.+||+|.++.+..+||||||+|.+.++|++|++.||+..+.|+.|+|.+|+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999985
No 13
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-20 Score=123.83 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCC-----eEeEEeec
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-----QSFRADYG 126 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g-----~~l~v~~a 126 (176)
....++|||+|||.++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++||+.||+..|.| +.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 356789999999999999999999999999999999988 999999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 030481 127 NQWSGA 132 (176)
Q Consensus 127 ~~~~~~ 132 (176)
+++...
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 987543
No 14
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.6e-21 Score=135.86 Aligned_cols=102 Identities=25% Similarity=0.493 Sum_probs=91.5
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+.|||..+.|+.|+|.++...... .....++|||+|||.++++++|+++|++||.
T Consensus 59 ~~l~~~~~~g~~i~v~~~~~~~~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 113 (166)
T 3md3_A 59 QTLNGKQIENNIVKINWAFQSQQS-------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPS 113 (166)
T ss_dssp HHHTTCEETTEECEEEECCCCCCC-------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTT
T ss_pred HHcCCCccCCCeeEEEEcCCCCCC-------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCC
Confidence 468999999999999999766432 2346789999999999999999999999999
Q ss_pred eEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 82 i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
|..+.++.+ +|+|||+|.+.++|.+|++.|||..++|+.|+|.||+.
T Consensus 114 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 114 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999865 68999999999999999999999999999999999873
No 15
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.8e-21 Score=121.43 Aligned_cols=78 Identities=36% Similarity=0.670 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhh-CCeeeCCeEeEEeecC
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSFRADYGN 127 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l-~g~~~~g~~l~v~~a~ 127 (176)
..+...++|||+|||.++++++|+++|++||.|..+.++.+++||||+|.+.++|++|++.| ++..+.|+.|+|.|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34457889999999999999999999999999999999999999999999999999999999 9999999999999985
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=122.41 Aligned_cols=82 Identities=29% Similarity=0.498 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.++++|||+|||.++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 030481 127 NQWSGAYY 134 (176)
Q Consensus 127 ~~~~~~~~ 134 (176)
+++..+..
T Consensus 83 ~~~~~~~~ 90 (95)
T 2dnz_A 83 TERLDGGS 90 (95)
T ss_dssp SCCCCCCC
T ss_pred ccccCCCC
Confidence 98765443
No 17
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=123.45 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HhhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
..+.++|||+|||.++++++|+ ++|++||.|.+|.++.+ ++||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467899999999999999999 99999999999999876 8999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 030481 125 YGNQWSG 131 (176)
Q Consensus 125 ~a~~~~~ 131 (176)
++++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987653
No 18
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.7e-20 Score=121.28 Aligned_cols=82 Identities=27% Similarity=0.432 Sum_probs=75.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhccc--CCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~--G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
........++|||+|||.++++++|+++|++| |.|..+.+. ++||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34445678999999999999999999999999 899999876 78999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
+++...
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 997764
No 19
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.3e-20 Score=121.86 Aligned_cols=82 Identities=30% Similarity=0.419 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
......++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..|.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34567899999999999999999999999999999999885 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
+++...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987653
No 20
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=120.95 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSG 131 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~ 131 (176)
..+.++|||+|||.++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.|++..+.|++|+|.|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4568999999999999999999999999999999998 89999999999999999999999999999999999987764
Q ss_pred C
Q 030481 132 A 132 (176)
Q Consensus 132 ~ 132 (176)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 21
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.3e-21 Score=129.53 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCC--eeeCCeEeEEeecC
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSFRADYGN 127 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g--~~~~g~~l~v~~a~ 127 (176)
....++++|||+|||+++++++|+++|++||.|.+|.|+.+||||||+|++.++|++|++.|++ ..|.|+.|+|.|++
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 3445688999999999999999999999999999999999999999999999999999998874 67999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
.+.
T Consensus 106 ~k~ 108 (119)
T 2ad9_A 106 HKE 108 (119)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 22
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-20 Score=120.23 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
.....++|||+|||.++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.||++.+.|+.|+|.++++..
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 34578999999999999999999999999999999998 6699999999999999999999999999999999998775
Q ss_pred C
Q 030481 131 G 131 (176)
Q Consensus 131 ~ 131 (176)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 23
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.84 E-value=5.1e-20 Score=135.10 Aligned_cols=121 Identities=14% Similarity=0.300 Sum_probs=96.5
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i 82 (176)
+|||..|.|+.|+|+++............ .....+...........++|||+|||.++++++|+++|++||.|
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 141 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGMSEN-------PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL 141 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCSSSC-------SSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCCcCC-------CcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 68999999999999998876443211000 00000111122234577999999999999999999999999999
Q ss_pred EEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 83 ~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
..+.+..+ +|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+++..
T Consensus 142 ~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 142 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred cEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999875 6899999999999999999999999999999999998764
No 24
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=124.66 Aligned_cols=81 Identities=31% Similarity=0.604 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
.....++|||+|||.++++++|+++|++||.|..|.++.+++||||+|.+.++|++|++.|++..|.|+.|+|.|+++..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 030481 131 G 131 (176)
Q Consensus 131 ~ 131 (176)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 25
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=126.63 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCC--eeeCCeEeEEeecCC
Q 030481 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSFRADYGNQ 128 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g--~~~~g~~l~v~~a~~ 128 (176)
..++++|||+|||++ +++++|+++|++||.|.+|.|+++||||||+|.+.++|++|++.|++ ..|.|+.|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 556899999999998 99999999999999999999999999999999999999999998864 569999999999987
Q ss_pred CCCCC
Q 030481 129 WSGAY 133 (176)
Q Consensus 129 ~~~~~ 133 (176)
+....
T Consensus 102 ~~~~~ 106 (112)
T 1x4f_A 102 YKKLV 106 (112)
T ss_dssp CSSSS
T ss_pred ccccc
Confidence 65433
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=122.89 Aligned_cols=83 Identities=29% Similarity=0.524 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....+.++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 344557899999999999999999999999999999999865 7999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 030481 125 YGNQWSG 131 (176)
Q Consensus 125 ~a~~~~~ 131 (176)
|++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987653
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.5e-20 Score=123.29 Aligned_cols=83 Identities=22% Similarity=0.483 Sum_probs=76.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHhh-CCeeeCCeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKL-NGTVIGKQS 120 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-------rg~afV~f~~~~~a~~ai~~l-~g~~~~g~~ 120 (176)
.......++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344567899999999999999999999999999999999876 699999999999999999999 999999999
Q ss_pred eEEeecCCCCC
Q 030481 121 FRADYGNQWSG 131 (176)
Q Consensus 121 l~v~~a~~~~~ 131 (176)
|+|.|+++...
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987653
No 28
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-20 Score=124.76 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
....++|||+|||.++++++|+++|++||.|.++++...+|||||+|.+.++|++|++.|++..++|+.|+|.|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999999863
No 29
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=7.9e-20 Score=123.78 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=75.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.....+.++|||+|||.++++++|+++|++||.|..|+++.+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556789999999999999999999999999999999875 48999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 030481 123 ADYGNQWSG 131 (176)
Q Consensus 123 v~~a~~~~~ 131 (176)
|.|+++...
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999987653
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.2e-20 Score=119.84 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
...++.++|||+|||.++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34557899999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred eecC
Q 030481 124 DYGN 127 (176)
Q Consensus 124 ~~a~ 127 (176)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.6e-20 Score=127.37 Aligned_cols=77 Identities=31% Similarity=0.555 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
...+|||+|||.++++++|+++|++||.|.+|+|+.+ ||||||+|.+.++|++||+.|++..|+|+.|+|.+++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999999999875 689999999999999999999999999999999999865
Q ss_pred C
Q 030481 130 S 130 (176)
Q Consensus 130 ~ 130 (176)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 32
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=1.9e-20 Score=134.55 Aligned_cols=98 Identities=16% Similarity=0.460 Sum_probs=88.8
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i 82 (176)
+|||..|.|+.|+|+++...... ...++|||+|||.++++++|+++|++||.|
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQPL---------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp GGTTCEETTEECEEECCSSCCCC---------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred HhCCcEecCceeeecCCcccCCC---------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 68999999999999987654322 247899999999999999999999999999
Q ss_pred EEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 83 ~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
..+.+..+ +|+|||+|.+.++|.+|++.|||..++|+.|+|+||.
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999876 5899999999999999999999999999999999984
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.8e-20 Score=122.79 Aligned_cols=83 Identities=25% Similarity=0.478 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
......++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557899999999999999999999999999999999875 589999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 030481 124 DYGNQWSGA 132 (176)
Q Consensus 124 ~~a~~~~~~ 132 (176)
.++++....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=125.66 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
++.++|||+||+.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|||..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999865 689999999999999999999999999999999999
Q ss_pred CCC
Q 030481 127 NQW 129 (176)
Q Consensus 127 ~~~ 129 (176)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=1.4e-19 Score=122.55 Aligned_cols=83 Identities=30% Similarity=0.651 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334567899999999999999999999999999999999875 58999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 030481 123 ADYGNQWSG 131 (176)
Q Consensus 123 v~~a~~~~~ 131 (176)
|.|+++...
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 36
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-20 Score=121.98 Aligned_cols=81 Identities=23% Similarity=0.439 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3557899999999999999999999999999999999865 5799999999999999999999999999999999
Q ss_pred ecCCCCC
Q 030481 125 YGNQWSG 131 (176)
Q Consensus 125 ~a~~~~~ 131 (176)
|+++...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.4e-20 Score=120.93 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
..+.++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999875 49999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
+++...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987753
No 38
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-20 Score=124.35 Aligned_cols=84 Identities=23% Similarity=0.416 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HhhcccCCeEEEEEeCCC---------cEEEEEecCHHHHHHHHHhhCCeeeCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLR---QPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIGK 118 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~---~~F~~~G~i~~i~~~~~r---------g~afV~f~~~~~a~~ai~~l~g~~~~g 118 (176)
.....++|||+|||.++++++|+ ++|++||.|..|.++.++ |||||+|.+.++|++|++.||+..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999998753 799999999999999999999999999
Q ss_pred eEeEEeecCCCCCCCC
Q 030481 119 QSFRADYGNQWSGAYY 134 (176)
Q Consensus 119 ~~l~v~~a~~~~~~~~ 134 (176)
+.|+|.|++++....+
T Consensus 91 r~l~V~~a~~k~~~~~ 106 (111)
T 2cpi_A 91 RTLKASLGTTKYCSYS 106 (111)
T ss_dssp EEEEEESCCCCSCSST
T ss_pred EEEEEEeccccccccc
Confidence 9999999998864443
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.5e-20 Score=120.59 Aligned_cols=82 Identities=21% Similarity=0.414 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
....+.++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999999875 4899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 030481 125 YGNQWSG 131 (176)
Q Consensus 125 ~a~~~~~ 131 (176)
|+++...
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987653
No 40
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.83 E-value=4.5e-20 Score=142.83 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCC-cEEEEEecCHHHHHHHHHhhCCeeeC-CeEeEEeecC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIG-KQSFRADYGN 127 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~r-g~afV~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~a~ 127 (176)
....+++|||+|||.++++++|+++|++||.|.+|+++.++ |||||+|.+.++|.+|++.|||..|. |+.|+|+|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 34467899999999999999999999999999999999876 99999999999999999999999999 9999999987
No 41
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=6.4e-20 Score=128.15 Aligned_cols=85 Identities=28% Similarity=0.427 Sum_probs=76.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
........++|||+|||.++++++|+++|+.||.|..|.++.+ +|||||+|.+.++|++|++.|++..|.|+.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3445567899999999999999999999999999999999864 6899999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 030481 122 RADYGNQWSGA 132 (176)
Q Consensus 122 ~v~~a~~~~~~ 132 (176)
+|.++++....
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 42
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9.5e-20 Score=120.15 Aligned_cols=80 Identities=23% Similarity=0.479 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++ |++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3457899999999999999999999999999999999874 6899999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 030481 125 YGNQWSG 131 (176)
Q Consensus 125 ~a~~~~~ 131 (176)
+++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987653
No 43
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1.7e-19 Score=119.89 Aligned_cols=79 Identities=27% Similarity=0.451 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSG 131 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~ 131 (176)
..+.++|||+|||.++++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|++..|.|+.|+|.|+++...
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3467899999999999999999999999999999988 77999999999999999999999999999999999987654
Q ss_pred C
Q 030481 132 A 132 (176)
Q Consensus 132 ~ 132 (176)
.
T Consensus 86 ~ 86 (103)
T 2dgu_A 86 K 86 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=121.41 Aligned_cols=80 Identities=26% Similarity=0.555 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
..+.++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..|.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 457899999999999999999999999999999999765 78999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
+++...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 45
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=7e-21 Score=142.14 Aligned_cols=104 Identities=30% Similarity=0.451 Sum_probs=91.7
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 80 (176)
|+.||+..+.|+.|++.++....... .....+|||+|||.++++++|+++|++||
T Consensus 74 i~~~~~~~~~g~~i~~~~~~~~~~~~-------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 128 (213)
T 4f02_A 74 LDTMNFDVIKGKPVRIMWSQRDPSLR-------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFG 128 (213)
T ss_dssp HHHHTTCEETTEECEEEECCCCTHHH-------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred HHHhhhhhcCCccccccccccccccc-------------------------ccccccceECCcccccHHHHHHHHHhhcC
Confidence 35689999999999999987653321 12457899999999999999999999999
Q ss_pred CeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 81 EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.|..++|+.+ +|||||+|.+.++|++|++.|||..|+|++|+|.+++++
T Consensus 129 ~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 129 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred CeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9999999864 689999999999999999999999999999999999864
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-19 Score=120.91 Aligned_cols=82 Identities=33% Similarity=0.504 Sum_probs=74.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
...+...++|||+|||.++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344567899999999999999999999999999999999875 58999999999999999999998 89999999
Q ss_pred EeecCCCCC
Q 030481 123 ADYGNQWSG 131 (176)
Q Consensus 123 v~~a~~~~~ 131 (176)
|.+++....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976543
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=119.40 Aligned_cols=77 Identities=30% Similarity=0.647 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|++..++|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 36789999999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred CCC
Q 030481 127 NQW 129 (176)
Q Consensus 127 ~~~ 129 (176)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=122.09 Aligned_cols=81 Identities=33% Similarity=0.619 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
..+.++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 030481 126 GNQWSGA 132 (176)
Q Consensus 126 a~~~~~~ 132 (176)
+++....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9877643
No 49
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=5.3e-20 Score=131.07 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+.++|||+|||.++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|++..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999999999999999765 5899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 030481 125 YGNQWSGA 132 (176)
Q Consensus 125 ~a~~~~~~ 132 (176)
|+++....
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99876543
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.8e-20 Score=119.52 Aligned_cols=79 Identities=34% Similarity=0.487 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....+.++|||+|||.++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||+..+.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999764 589999999999999999999999999999999
Q ss_pred eecCC
Q 030481 124 DYGNQ 128 (176)
Q Consensus 124 ~~a~~ 128 (176)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 51
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9.7e-20 Score=118.11 Aligned_cols=77 Identities=22% Similarity=0.441 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
....++|||+|||.++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.|++..+.|+.|+|.++++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4578899999999999999999999999999999998 6699999999999999999999999999999999998764
No 52
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=123.06 Aligned_cols=79 Identities=23% Similarity=0.455 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
...++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|+|..|.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999886 4999999999999999999999999999999999998
Q ss_pred CCCC
Q 030481 128 QWSG 131 (176)
Q Consensus 128 ~~~~ 131 (176)
+...
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 53
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=1e-19 Score=122.32 Aligned_cols=76 Identities=32% Similarity=0.571 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 53 SSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 53 ~~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
...++|||+|||.+ +++++|+++|++||.|..|.+ .++||||+|.+.++|++|++.|++..|+|+.|+|.|++...
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 45689999999999 999999999999999999988 58999999999999999999999999999999999998543
No 54
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=122.32 Aligned_cols=82 Identities=26% Similarity=0.412 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeE--------EEEEeCC------CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--------SVKIPVG------KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~--------~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
......++|||+|||.++++++|+++|++||.|. .|.++.+ +|||||+|.+.++|++|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 6888765 6899999999999999999999999
Q ss_pred eCCeEeEEeecCCCCC
Q 030481 116 IGKQSFRADYGNQWSG 131 (176)
Q Consensus 116 ~~g~~l~v~~a~~~~~ 131 (176)
|.|+.|+|.++++...
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999997754
No 55
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=6.4e-20 Score=117.01 Aligned_cols=76 Identities=28% Similarity=0.580 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
+++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|+|..+.|+.|+|.|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999865 68999999999999999999999999999999999987
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=4.5e-20 Score=120.05 Aligned_cols=80 Identities=30% Similarity=0.459 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
..+.++|||+|||.++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.|++..+.|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346889999999999999999999999999999998864 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 030481 128 QWSG 131 (176)
Q Consensus 128 ~~~~ 131 (176)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 57
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=6e-20 Score=117.64 Aligned_cols=76 Identities=28% Similarity=0.610 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
..+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.||+..+.|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 347899999999999999999999999999999988654 79999999999999999999999999999999999
Q ss_pred cC
Q 030481 126 GN 127 (176)
Q Consensus 126 a~ 127 (176)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 58
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.8e-20 Score=123.88 Aligned_cols=83 Identities=34% Similarity=0.530 Sum_probs=76.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 47 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.........++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|+|..++|+.|+
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445667899999999999999999999999999999999876 79999999999999999999999999999999
Q ss_pred EeecCCC
Q 030481 123 ADYGNQW 129 (176)
Q Consensus 123 v~~a~~~ 129 (176)
|.+++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999865
No 59
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-19 Score=116.30 Aligned_cols=79 Identities=25% Similarity=0.499 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
......++|||+|| ++++++|+++|++||.|..|.+...++||||+|.+.++|++|++.|++..|.|+.|+|.|+++.
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 34456789999996 8999999999999999999999988999999999999999999999999999999999999876
Q ss_pred C
Q 030481 130 S 130 (176)
Q Consensus 130 ~ 130 (176)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 60
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=122.25 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccC-CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhC-CeeeCCeEeEEeec
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKLN-GTVIGKQSFRADYG 126 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~-g~~~~g~~l~v~~a 126 (176)
+++|||+|||.++++++|+++|++|| .|.+|+++++ ||||||+|.+.++|++|++.++ +..++|++|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999998864 6999999999999999999875 56799999999999
Q ss_pred CCCC
Q 030481 127 NQWS 130 (176)
Q Consensus 127 ~~~~ 130 (176)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8765
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=120.85 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+.++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
+++...
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 62
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=3.3e-20 Score=137.86 Aligned_cols=113 Identities=20% Similarity=0.403 Sum_probs=92.7
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+.|||..|+|+.|+|.++........... .........++|||+|||.++++++|+++|++||.
T Consensus 88 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 151 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRPSNIGQAQPIID----------------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 151 (216)
T ss_dssp HHHSSCCCC-CCCEEECCSCCGGGHHHHH----------------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC
T ss_pred HHccCCeeCCeeEEEecCCCccccchhhh----------------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC
Confidence 46899999999999998876543210000 00011235689999999999999999999999999
Q ss_pred eEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 82 i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
|..+.++.+ +|||||+|.+.++|.+|++.||+..|+|+.|+|.|+++..
T Consensus 152 v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 152 IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 999999875 6899999999999999999999999999999999998764
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=119.60 Aligned_cols=80 Identities=30% Similarity=0.522 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
...+.++|||+|||.++++++|+++|++|| |..|.++.+ +|||||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999998754 689999999999999999 89999999999999
Q ss_pred eecCCCCCC
Q 030481 124 DYGNQWSGA 132 (176)
Q Consensus 124 ~~a~~~~~~ 132 (176)
.++++....
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999877543
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.5e-19 Score=119.31 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.....++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456889999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred cCCC
Q 030481 126 GNQW 129 (176)
Q Consensus 126 a~~~ 129 (176)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9754
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.7e-19 Score=120.08 Aligned_cols=79 Identities=28% Similarity=0.561 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCC---eEeEE
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGK---QSFRA 123 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g---~~l~v 123 (176)
....++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.||+..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356899999999999999999999999999999999876 6999999999999999999999999998 99999
Q ss_pred eecCCCC
Q 030481 124 DYGNQWS 130 (176)
Q Consensus 124 ~~a~~~~ 130 (176)
.|+++..
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9998765
No 66
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.82 E-value=8.4e-20 Score=131.68 Aligned_cols=102 Identities=23% Similarity=0.367 Sum_probs=89.2
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i 82 (176)
+|||..|.|++|+|.++..+... .....++|||+|||.++++++|+++|++||.|
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~~-------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v 126 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDSK-------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEI 126 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSCS-------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE
T ss_pred hcCCCEeCCeEEEEecCCCcccc-------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE
Confidence 48999999999999999876432 13367899999999999999999999999998
Q ss_pred EEEEEe--CCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 83 ASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 83 ~~i~~~--~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
..+ .. ..+|+|||+|.+.++|.+|++.|+|..|.|+.|+|.|+++++
T Consensus 127 ~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 127 RLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp EEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred EEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 877 21 137999999999999999999999999999999999998763
No 67
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=4.7e-20 Score=131.85 Aligned_cols=98 Identities=28% Similarity=0.516 Sum_probs=88.5
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+.|||..++|+.|+|.++.+.... ...++|||+|||.++++++|+++|++||.
T Consensus 63 ~~l~~~~~~g~~l~v~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 115 (168)
T 1b7f_A 63 KVLNGITVRNKRLKVSYARPGGES---------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGS 115 (168)
T ss_dssp HHHTTCEETTEECEEEECCCCSST---------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSC
T ss_pred HhcCCCEeCCcEEEEEecCCCccc---------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCc
Confidence 468999999999999999765432 35689999999999999999999999999
Q ss_pred eEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeec
Q 030481 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSFRADYG 126 (176)
Q Consensus 82 i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a 126 (176)
|..+.+..+ +|+|||+|.+.++|.+|++.|||..+.| ++|+|.||
T Consensus 116 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 116 IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999998875 4899999999999999999999999988 99999986
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=119.67 Aligned_cols=79 Identities=28% Similarity=0.495 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
.+.++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 36789999999999999999999999999999998742 579999999999999999999999999999999
Q ss_pred eecCCCCC
Q 030481 124 DYGNQWSG 131 (176)
Q Consensus 124 ~~a~~~~~ 131 (176)
.++++...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 69
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.4e-19 Score=123.00 Aligned_cols=79 Identities=27% Similarity=0.494 Sum_probs=72.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.....+.++|||+|||.++++++|+++|++||.|..|+++.+ +|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999999999999999865 68999999999999999999999999999999
Q ss_pred EeecC
Q 030481 123 ADYGN 127 (176)
Q Consensus 123 v~~a~ 127 (176)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 70
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=1e-19 Score=122.18 Aligned_cols=81 Identities=30% Similarity=0.546 Sum_probs=73.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
........++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|+|..++|+.|+|.|++
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34456678999999999999999999999999999999998 8999999999999999999999999999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
+..
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 71
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.82 E-value=1.1e-19 Score=137.13 Aligned_cols=128 Identities=21% Similarity=0.327 Sum_probs=95.6
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCC--------CCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGG--------YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~ 73 (176)
+.|||..|.|+.|+|.++........+........ .................++++|||+|||.++++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 46899999999999999986643221111000000 0000000001111223457999999999999999999
Q ss_pred HhhcccC-CeEEEEEeC-CCcEEEEEecCHHHHHHHHHhhCCeeeC-CeEeEEeecCCC
Q 030481 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSFRADYGNQW 129 (176)
Q Consensus 74 ~~F~~~G-~i~~i~~~~-~rg~afV~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~a~~~ 129 (176)
++|++|| .|..+.++. ++++|||+|.+.++|.+|++.|+|..+. |+.|+|.|+++.
T Consensus 170 ~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 170 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999 999999955 7899999999999999999999999999 999999999863
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-19 Score=119.93 Aligned_cols=81 Identities=23% Similarity=0.488 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhC------CeeeC
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLN------GTVIG 117 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~------g~~~~ 117 (176)
....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|+ +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34557889999999999999999999999999999999854 7899999999999999999999 99999
Q ss_pred CeEeEEeecCCCC
Q 030481 118 KQSFRADYGNQWS 130 (176)
Q Consensus 118 g~~l~v~~a~~~~ 130 (176)
|+.|+|.|+++..
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999998765
No 73
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=119.29 Aligned_cols=79 Identities=29% Similarity=0.563 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEE-EEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i-~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.+.++|||+|||.++++++|+++|++||.|..+ .++.+ ++||||+|.+.++|++|++.|++..|.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999 88875 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
+++...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 74
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=133.61 Aligned_cols=128 Identities=21% Similarity=0.334 Sum_probs=95.9
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCC--------CCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG--------GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~ 73 (176)
+.|||..|.|+.|+|.++...............+ .................+++++|||+|||..+++++|+
T Consensus 59 ~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 138 (198)
T 1qm9_A 59 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 138 (198)
T ss_dssp HHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHH
T ss_pred HHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHH
Confidence 4689999999999999998764322111100000 00000001111112223568999999999999999999
Q ss_pred HhhcccC-CeEEEEEeC-CCcEEEEEecCHHHHHHHHHhhCCeeeC-CeEeEEeecCCC
Q 030481 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSFRADYGNQW 129 (176)
Q Consensus 74 ~~F~~~G-~i~~i~~~~-~rg~afV~f~~~~~a~~ai~~l~g~~~~-g~~l~v~~a~~~ 129 (176)
++|++|| .|..+.++. ++|+|||+|.+.++|.+|++.|||..+. |+.|+|.|+++.
T Consensus 139 ~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 139 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999 999999965 6899999999999999999999999999 999999999853
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=3.1e-19 Score=118.51 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....+.++|||+|||.++++++|+++|++|| |..|.++.+ +|||||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445689999999999999999999999996 999999865 579999999999999999 89999999999999
Q ss_pred eecCCCCC
Q 030481 124 DYGNQWSG 131 (176)
Q Consensus 124 ~~a~~~~~ 131 (176)
.++++...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987654
No 76
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=1.2e-19 Score=119.11 Aligned_cols=77 Identities=22% Similarity=0.491 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
++++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|+|..++|+.|+|.|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3689999999999999999999999999999999865 6999999999999999999999999999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 77
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=119.34 Aligned_cols=79 Identities=29% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
......++|||+|||.++++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34457899999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred ecCC
Q 030481 125 YGNQ 128 (176)
Q Consensus 125 ~a~~ 128 (176)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 78
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=2e-19 Score=118.46 Aligned_cols=81 Identities=26% Similarity=0.453 Sum_probs=72.6
Q ss_pred CCCCCCCCCeEEEcCCCC-CCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 48 QSEGDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.....+++++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 344556789999999998 99999999999999999999885 899999999999999999999999999999999999
Q ss_pred CCCC
Q 030481 127 NQWS 130 (176)
Q Consensus 127 ~~~~ 130 (176)
+...
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 79
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=122.09 Aligned_cols=80 Identities=26% Similarity=0.492 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...++++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999865 6899999999999999999999999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
|+++..
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998654
No 80
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.6e-19 Score=120.40 Aligned_cols=82 Identities=23% Similarity=0.458 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeee---CCeE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVI---GKQS 120 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~---~g~~ 120 (176)
....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34557899999999999999999999999999999999874 68999999999999999999999987 8999
Q ss_pred eEEeecCCCCC
Q 030481 121 FRADYGNQWSG 131 (176)
Q Consensus 121 l~v~~a~~~~~ 131 (176)
|+|.++++...
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 81
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=119.65 Aligned_cols=80 Identities=29% Similarity=0.458 Sum_probs=73.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE--------EEEeCC------CcEEEEEecCHHHHHHHHHhhCC
Q 030481 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNG 113 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------i~~~~~------rg~afV~f~~~~~a~~ai~~l~g 113 (176)
........++|||+|||.++++++|+++|++||.|.. +.++.+ +|||||+|.+.++|++|++.|+|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445667899999999999999999999999999998 888765 58999999999999999999999
Q ss_pred eeeCCeEeEEeecC
Q 030481 114 TVIGKQSFRADYGN 127 (176)
Q Consensus 114 ~~~~g~~l~v~~a~ 127 (176)
..+.|+.|+|.+|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999985
No 82
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.6e-19 Score=124.95 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++..|+|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999999864 68999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|.|++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 83
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=8.6e-20 Score=125.45 Aligned_cols=83 Identities=25% Similarity=0.477 Sum_probs=75.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
+....+.++|||+|||.++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344556889999999999999999999999999999999865 79999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 030481 123 ADYGNQWSG 131 (176)
Q Consensus 123 v~~a~~~~~ 131 (176)
|.|+++...
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999986653
No 84
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=119.25 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCC-eEEEEEeCCCcEEEEEecCHHHHHHHHHhhCC-eeeCCeEeEEeecCCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALHKLNG-TVIGKQSFRADYGNQW 129 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~-i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g-~~~~g~~l~v~~a~~~ 129 (176)
....++|||+|||.++++++|+++|++||. |..+.+ ..++||||+|.+.++|++|++.||+ ..+.|+.|+|.|+++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 346789999999999999999999999999 555544 4689999999999999999999999 9999999999999876
Q ss_pred CC
Q 030481 130 SG 131 (176)
Q Consensus 130 ~~ 131 (176)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 85
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=121.20 Aligned_cols=82 Identities=29% Similarity=0.580 Sum_probs=75.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
.....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999999999999999864 58999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 86
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.1e-19 Score=116.67 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~--~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
...+.++|||+|||.++++++|+++|++||.|.-+.... .++||||+|.+.++|++|++.|++..|.|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 455789999999999999999999999999873221111 279999999999999999999999999999999999987
Q ss_pred CCC
Q 030481 129 WSG 131 (176)
Q Consensus 129 ~~~ 131 (176)
...
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 87
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=119.44 Aligned_cols=76 Identities=18% Similarity=0.401 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCC--eEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCe----eeCCeE
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVG------KGCGFVQFANRENAEEALHKLNGT----VIGKQS 120 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~--i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~----~~~g~~ 120 (176)
..-.+|||+|||+++|+++|+++|++||. +.+|+++++ ||||||+|.+.++|++|++.||+. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45679999999999999999999999995 678888775 689999999999999999999986 599999
Q ss_pred eEEeecCC
Q 030481 121 FRADYGNQ 128 (176)
Q Consensus 121 l~v~~a~~ 128 (176)
|+|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=2.2e-19 Score=120.57 Aligned_cols=81 Identities=22% Similarity=0.444 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999765 699999999999999999999999999999999
Q ss_pred eecCCCC
Q 030481 124 DYGNQWS 130 (176)
Q Consensus 124 ~~a~~~~ 130 (176)
.|+++..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9998654
No 89
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.81 E-value=9.4e-20 Score=129.95 Aligned_cols=98 Identities=32% Similarity=0.615 Sum_probs=87.4
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+.|||..+.|+.|+|.++.+.... ...++|||+|||.++++++|+++|++||.
T Consensus 62 ~~l~~~~~~g~~l~v~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 62 NTLNGLRLQTKTIKVSYARPSSAS---------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp HHHTTCEETTEECEEEECCCCCGG---------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCccCCceEEEEecCCCccc---------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCC
Confidence 468999999999999999765332 25678999999999999999999999999
Q ss_pred eEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeE--eEEeec
Q 030481 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS--FRADYG 126 (176)
Q Consensus 82 i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~--l~v~~a 126 (176)
|..+.+..+ +|+|||+|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 115 i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 115 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999998764 589999999999999999999999999975 888886
No 90
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-20 Score=124.57 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
..++|||+|||.++++++|+++|++||.|..|.++.+++||||+|.+.++|++|++.|||..+.|+.|+|.|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999753
No 91
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=118.87 Aligned_cols=81 Identities=30% Similarity=0.455 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++. ++..|.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567899999999999999999999999999999999875 48999999999999999998 999999999999
Q ss_pred eecCCCCC
Q 030481 124 DYGNQWSG 131 (176)
Q Consensus 124 ~~a~~~~~ 131 (176)
.+++++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-19 Score=120.47 Aligned_cols=79 Identities=22% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++. ++..|+|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 445689999999999999999999999999999999875 58999999999999999997 99999999999999
Q ss_pred cCCCCC
Q 030481 126 GNQWSG 131 (176)
Q Consensus 126 a~~~~~ 131 (176)
++++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987754
No 93
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.3e-20 Score=119.91 Aligned_cols=78 Identities=26% Similarity=0.424 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 52 ~~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
..+.++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++++..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 45789999999998 99999999999999999999987 8999999999999999999999999999999999998665
Q ss_pred C
Q 030481 131 G 131 (176)
Q Consensus 131 ~ 131 (176)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 94
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=122.06 Aligned_cols=79 Identities=20% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeee-----CCeEeEEe
Q 030481 52 DSSNTTIFV--GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI-----GKQSFRAD 124 (176)
Q Consensus 52 ~~~~~~l~v--~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~-----~g~~l~v~ 124 (176)
..++++||| +||+.++++++|+++|++||.|..|.++.+||||||+|.+.++|++|++.|||+.+ .|+.|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 345789999 77999999999999999999999999998999999999999999999999999998 78999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
|++..+
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 997543
No 95
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.80 E-value=1.5e-19 Score=121.78 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccC-CeEEEEEeC--CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~i~~~~--~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
....++|||+|||+++++++|+++|++|| .|..+.+.. .+|||||+|.+.++|++||+.|||..|+|+.|+|.+++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44678999999999999999999999999 899998863 489999999999999999999999999999999999874
Q ss_pred C
Q 030481 129 W 129 (176)
Q Consensus 129 ~ 129 (176)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=119.09 Aligned_cols=80 Identities=25% Similarity=0.285 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456789999999999999999999999999876655542 6999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
+++...
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 998654
No 97
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=2.8e-19 Score=130.95 Aligned_cols=107 Identities=20% Similarity=0.345 Sum_probs=85.0
Q ss_pred cCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeE
Q 030481 4 MNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA 83 (176)
Q Consensus 4 mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~ 83 (176)
+++..|.|+.|.|.++....... ........++|||+|||.++++++|+++|++||.|.
T Consensus 74 ~~~~~~~g~~l~v~~~~~~~~~~---------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 74 ARPHKVDGRVVEPKRAVSREDSQ---------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp TCSCEETTEECEEEECCC--------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred cCCCEECCEEeeeecccCccccc---------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 37889999999999987664331 112234568999999999999999999999999999
Q ss_pred EEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCCC
Q 030481 84 SVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSGA 132 (176)
Q Consensus 84 ~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~~ 132 (176)
.+.++.+ +|||||+|.+.++|.+|+.. ++..|+|+.|+|.|+.++...
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999865 68999999999999999986 899999999999999877543
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=119.29 Aligned_cols=76 Identities=29% Similarity=0.537 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSG 131 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~ 131 (176)
++|||+|||.++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.|++..+.|+.|+|.++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 58999999999999999999999999999999987 99999999999999999999999999999999999987753
No 99
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=118.89 Aligned_cols=79 Identities=29% Similarity=0.506 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcc-cCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCee-eCCeEeEEe
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGKQSFRAD 124 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~-~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~-~~g~~l~v~ 124 (176)
..+.++|||+|||.++++++|+++|++ ||.|..|.++.+ +|||||+|.+.++|.+|++.|++.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456789999999999999999999999 999999999875 7999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
++++..
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 998665
No 100
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=117.98 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeE-EEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeE----
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS---- 120 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~-~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~---- 120 (176)
....++|||+|||.++++++|+++|++||.|. .+.++.+ +|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44689999999999999999999999999999 9999876 489999999999999999999999999999
Q ss_pred eEEeecCCCC
Q 030481 121 FRADYGNQWS 130 (176)
Q Consensus 121 l~v~~a~~~~ 130 (176)
|+|.|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998654
No 101
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=8.7e-19 Score=120.16 Aligned_cols=80 Identities=20% Similarity=0.391 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.....++|||+|||.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999999874 69999999999999999999999999999999999
Q ss_pred cCCCC
Q 030481 126 GNQWS 130 (176)
Q Consensus 126 a~~~~ 130 (176)
|....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98654
No 102
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=123.52 Aligned_cols=80 Identities=16% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HhhcccCCeEEEEEeC---CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~i~~~~---~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
...++++|||+||++.+++++|+ ++|++||.|.+|.+.. .||||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34568899999999999999876 6999999999998865 3799999999999999999999999999999999
Q ss_pred eecCCCC
Q 030481 124 DYGNQWS 130 (176)
Q Consensus 124 ~~a~~~~ 130 (176)
.|++...
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998664
No 103
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8.1e-19 Score=116.21 Aligned_cols=81 Identities=26% Similarity=0.426 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....+.++|||+|||.++++++|+++|+.|+. +.++.+ ++||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557899999999999999999999998854 444433 589999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 030481 124 DYGNQWSGAY 133 (176)
Q Consensus 124 ~~a~~~~~~~ 133 (176)
.|++++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2fc8_A 87 DWAKPKGEGG 96 (102)
T ss_dssp EECCCCCSSS
T ss_pred EEecCCCCCC
Confidence 9999876543
No 104
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=114.22 Aligned_cols=77 Identities=34% Similarity=0.538 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC-------CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~-------~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
..++|||+|||.++++++|+++|++||.|..+.++. .+|+|||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999998865 3689999999999999999999999999999999999
Q ss_pred CCCC
Q 030481 127 NQWS 130 (176)
Q Consensus 127 ~~~~ 130 (176)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 105
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=4.2e-19 Score=118.60 Aligned_cols=77 Identities=21% Similarity=0.426 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
...+.++|||+|||..+++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred cC
Q 030481 126 GN 127 (176)
Q Consensus 126 a~ 127 (176)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 106
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=3.4e-19 Score=116.93 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HhhcccCCeEEEEEeC---CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~i~~~~---~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
..++++|||+|||.++++++|+ ++|++||.|..|.+.. .+|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578999999999999999999 9999999999998874 37999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
|+++..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998764
No 107
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.7e-19 Score=114.93 Aligned_cols=79 Identities=19% Similarity=0.447 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEe--CCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~--~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
.....++|||+|||.++++++|+++|++||.|. +.++ ..+|||||+|.+.++|++|++.||+..|.|+.|+|.++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345678999999999999999999999999985 4444 4589999999999999999999999999999999999987
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 108
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=120.64 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+ .|+++.|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3445789999999999999999999999999999999864 689999999999999999 899999999999999
Q ss_pred ecCCC
Q 030481 125 YGNQW 129 (176)
Q Consensus 125 ~a~~~ 129 (176)
++++.
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 99754
No 109
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=6.2e-19 Score=113.81 Aligned_cols=76 Identities=22% Similarity=0.440 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+ .|++..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999998865 689999999999999999 899999999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=117.03 Aligned_cols=81 Identities=19% Similarity=0.468 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeee--------
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI-------- 116 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~-------- 116 (176)
....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34456789999999999999999999999999999999875 68999999999999999999999999
Q ss_pred CCeEeEEeecCCCC
Q 030481 117 GKQSFRADYGNQWS 130 (176)
Q Consensus 117 ~g~~l~v~~a~~~~ 130 (176)
.++.|+|.|+++..
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 57889999998654
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=117.39 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe----EEEEEeCC--CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i----~~i~~~~~--rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+.++|||+|||.++++++|+++|++||.| ..+++... +|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999988 56666543 7999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 030481 125 YGNQWSG 131 (176)
Q Consensus 125 ~a~~~~~ 131 (176)
|+++...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987653
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=122.28 Aligned_cols=82 Identities=20% Similarity=0.409 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE--EEEeCC------CcEEEEEecCHHHHHHHHHhhCCe----ee
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--VKIPVG------KGCGFVQFANRENAEEALHKLNGT----VI 116 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~----~~ 116 (176)
+......++|||+|||.++++++|+++|++||.|.. |+|+.+ ||||||+|.+. +|.+|++.||+. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567889999999999999999999999999966 888775 59999999999 999999999999 99
Q ss_pred CCeEeEEeecCCCCC
Q 030481 117 GKQSFRADYGNQWSG 131 (176)
Q Consensus 117 ~g~~l~v~~a~~~~~ 131 (176)
+|+.|+|.++++...
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999987654
No 113
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.79 E-value=3.6e-19 Score=138.34 Aligned_cols=107 Identities=22% Similarity=0.501 Sum_probs=90.7
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHhhcccC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYG 80 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~-~~~~~l~~~F~~~G 80 (176)
+.|||..|+|+.|+|.++.+....... .......++|||+|||.+ +++++|+++|++||
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRT--------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC-----------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccc--------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 458999999999999999876543210 123456789999999999 99999999999999
Q ss_pred CeEEEEEeCC-------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 81 EIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 81 ~i~~i~~~~~-------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.|..|.++.+ +|||||+|.+.++|.+|+ .|||..|.|+.|+|.|++++
T Consensus 237 ~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 237 SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999764 689999999999999999 99999999999999999875
No 114
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.79 E-value=3.7e-19 Score=137.80 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=93.3
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHhhcccC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNV-TDEDLRQPFSQYG 80 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~-~~~~l~~~F~~~G 80 (176)
+.|||..|+|+.|+|.++.++... ......++|||+|||.++ ++++|+++|+.||
T Consensus 155 ~~l~~~~~~g~~i~v~~a~~~~~~------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 155 SDLLGKPLGPRTLYVHWTDAGQLT------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp HHHTTCEETTEECEEEECCGGGCC------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred HHhCCCEeCCcEEEEEECCCCCCC------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 478999999999999999765332 123467899999999995 9999999999999
Q ss_pred CeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 81 ~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
.|..+.++.+ +|+|||+|.+.++|.+|++.|+|..+.|+.|+|.|+++..
T Consensus 211 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 211 SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999998876 7999999999999999999999999999999999998764
No 115
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=120.63 Aligned_cols=77 Identities=27% Similarity=0.597 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557899999999999999999999999999999999765 799999999999999999999999999999999
Q ss_pred eec
Q 030481 124 DYG 126 (176)
Q Consensus 124 ~~a 126 (176)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 116
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=112.60 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
....++|||+|||.++++++|+++|++| .|..+.++.+ +|||||+|.+.++|++|++ |++..|.|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 9999998875 6899999999999999999 9999999999999999
Q ss_pred CCCC
Q 030481 127 NQWS 130 (176)
Q Consensus 127 ~~~~ 130 (176)
++..
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=2e-19 Score=123.24 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
..++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+ .|++..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999998764 689999999999999999 799999999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 118
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-18 Score=113.24 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=72.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++ +++.|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999875 5799999999999999999 578999999999
Q ss_pred eecCCCCC
Q 030481 124 DYGNQWSG 131 (176)
Q Consensus 124 ~~a~~~~~ 131 (176)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987653
No 119
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=7.9e-20 Score=118.62 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=65.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccC--CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
.+|||+|||.++++++|+++|++|| .|.++.++.+ +|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999998875 5899999999999999999999999999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 120
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=6.5e-19 Score=113.79 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
..++|||+|||.++++++|+++|++| .|..+.+...+|||||+|.+.++|++|++.||+..+.|++|+|.|+...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 57899999999999999999999999 9999998877999999999999999999999999999999999999755
No 121
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=120.76 Aligned_cols=79 Identities=30% Similarity=0.547 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
+...++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|+|..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345789999999999999999999999999999998865 68999999999999999999999999999999999
Q ss_pred cCCCC
Q 030481 126 GNQWS 130 (176)
Q Consensus 126 a~~~~ 130 (176)
+++..
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98653
No 122
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=115.32 Aligned_cols=75 Identities=31% Similarity=0.517 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|||..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999875 689999999999999999999999999999999886
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=5.4e-19 Score=119.84 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeE-----eEEeecC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS-----FRADYGN 127 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~-----l~v~~a~ 127 (176)
...++|||+|||.++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++||+.||+..|+|+. |+|..+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45789999999999999999999999999999999887 99999999999999999999999999998 7777777
Q ss_pred CCCC
Q 030481 128 QWSG 131 (176)
Q Consensus 128 ~~~~ 131 (176)
+...
T Consensus 93 ~~~~ 96 (115)
T 3beg_B 93 PRSP 96 (115)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 124
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.5e-18 Score=111.62 Aligned_cols=75 Identities=23% Similarity=0.522 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++ +++..|+|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999999865 6899999999999999997 58899999999999
Q ss_pred ec
Q 030481 125 YG 126 (176)
Q Consensus 125 ~a 126 (176)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 125
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=4e-18 Score=116.83 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcE-EEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeecCCCC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANRENAEEALHKLNGTVIGK--QSFRADYGNQWS 130 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~-afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a~~~~ 130 (176)
...|||+||++.+++++|+++|++||.|.+|.+....|| |||+|.+.++|.+|++.|||..|.| +.|+|.||++..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 345789999999999999999999999999988765696 9999999999999999999999987 699999999765
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.1e-18 Score=117.96 Aligned_cols=77 Identities=21% Similarity=0.412 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
..+++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 46789999999999999999999999999999999865 689999999999999999999999999999999999854
No 127
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=3e-19 Score=132.79 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=88.3
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCC-----CC--CCCCCC---CCCCCCCCCCCeEEEcCCCCCCCHH
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY-----AS--NGAPGQ---GPQSEGDSSNTTIFVGGLDPNVTDE 70 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~-----~~--~~~~~~---~~~~~~~~~~~~l~v~~L~~~~~~~ 70 (176)
|+.|||.+|.||+|+|+++..+............+.. .. ...... .......+++++|||+|||++++++
T Consensus 59 i~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~ 138 (205)
T 3tyt_A 59 ITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEE 138 (205)
T ss_dssp HHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHH
T ss_pred HHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHH
Confidence 4579999999999999998755432110000000000 00 000000 0011123457899999999999999
Q ss_pred HHHHhhcccCCe--EEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCe----EeEEeec
Q 030481 71 DLRQPFSQYGEI--ASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQ----SFRADYG 126 (176)
Q Consensus 71 ~l~~~F~~~G~i--~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~----~l~v~~a 126 (176)
+|+++|++||.| ..++++.+ +|+|||+|.+.++|.+||..|||..|.|+ ++.|.|+
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999998 89988875 48999999999999999999999999887 4555543
No 128
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=117.15 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+. ++++.++|+.|+|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 446789999999999999999999999999999999874 7999999999999999999 8999999999999987
Q ss_pred CC
Q 030481 127 NQ 128 (176)
Q Consensus 127 ~~ 128 (176)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 129
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=117.90 Aligned_cols=80 Identities=30% Similarity=0.511 Sum_probs=69.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
.......++|||+|||.++++++|+++|++|| |..|.++.+ +|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34456789999999999999999999999999 999999764 589999999999999999 899999999999
Q ss_pred EEeecCCCC
Q 030481 122 RADYGNQWS 130 (176)
Q Consensus 122 ~v~~a~~~~ 130 (176)
+|.++++..
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998754
No 130
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=115.87 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=69.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 48 ~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
......+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.+ +..|+|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 4445567899999999999999999999999999999999875 689999999999999999976 599999999
Q ss_pred EEeecCCCC
Q 030481 122 RADYGNQWS 130 (176)
Q Consensus 122 ~v~~a~~~~ 130 (176)
+|.++.++.
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998664
No 131
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.6e-19 Score=117.20 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCC-eEEEEEe-------CCCcEEEEEecCHHHHHHHHHhhC--CeeeCCeEeE
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIP-------VGKGCGFVQFANRENAEEALHKLN--GTVIGKQSFR 122 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~-i~~i~~~-------~~rg~afV~f~~~~~a~~ai~~l~--g~~~~g~~l~ 122 (176)
.+.++|||+|||.++++++|+++|++||. |..+.++ ..+|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999988 347999999999999999999996 5899999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|.|+++..
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998765
No 132
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.5e-19 Score=119.59 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCC-eE
Q 030481 54 SNTTIFVGGLDP------NVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK-QS 120 (176)
Q Consensus 54 ~~~~l~v~~L~~------~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g-~~ 120 (176)
.+++|||+|||. ++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 9999999999999999999998754 6999999999999999999999999999 99
Q ss_pred eEEeecCC
Q 030481 121 FRADYGNQ 128 (176)
Q Consensus 121 l~v~~a~~ 128 (176)
|+|.++++
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999864
No 133
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=115.41 Aligned_cols=78 Identities=24% Similarity=0.418 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHhhcccCCeEEEEEeC----CCcEEEEEecCHHHHHHHHHhhCCeeeCCe-E
Q 030481 52 DSSNTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ-S 120 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~------~~~~l~~~F~~~G~i~~i~~~~----~rg~afV~f~~~~~a~~ai~~l~g~~~~g~-~ 120 (176)
....++|||+|||..+ ++++|+++|++||.|..|.++. .+|||||+|.+.++|.+|++.|||..|.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3457899999999999 7899999999999999999884 279999999999999999999999999998 9
Q ss_pred eEEeecCCC
Q 030481 121 FRADYGNQW 129 (176)
Q Consensus 121 l~v~~a~~~ 129 (176)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 134
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=124.54 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC--CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
..++|||+|||.++++++|+++|++|| .|.+|+++.+ +|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999865 68999999999999999999999999999999999
Q ss_pred cCCC
Q 030481 126 GNQW 129 (176)
Q Consensus 126 a~~~ 129 (176)
+++.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9743
No 135
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=3.2e-19 Score=116.63 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
+..++|||+|||.++++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||++.|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999877666542 689999999999999999999999999999999998
Q ss_pred CC
Q 030481 127 NQ 128 (176)
Q Consensus 127 ~~ 128 (176)
+.
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 136
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=2.6e-18 Score=122.66 Aligned_cols=79 Identities=27% Similarity=0.279 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeecC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGK--QSFRADYGN 127 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~--rg~afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a~ 127 (176)
+....+|||+||++.+++++|+++|++||.|.+|.+..+ ++||||+|.+.++|++|++.|||..|.| +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 344568999999999999999999999999999998643 5799999999999999999999999965 999999999
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
+..
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 137
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=6.1e-19 Score=122.90 Aligned_cols=82 Identities=26% Similarity=0.507 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
+....+.++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556789999999999999999999999999999999865 68999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|.|+++..
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 138
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=112.49 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~--rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
...+.++|||+|||.++++++|+++|++||.|..+ .... +|||||+|.+.++|++|++.|++..|.|+.|+|.++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34568899999999999999999999999988777 2222 79999999999999999999999999999999999987
Q ss_pred CCC
Q 030481 129 WSG 131 (176)
Q Consensus 129 ~~~ 131 (176)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 139
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=4.9e-18 Score=120.92 Aligned_cols=80 Identities=26% Similarity=0.520 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
|+++..
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998653
No 140
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=116.11 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCe-EEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i-~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
...+.++|||+|||.++++++|+++|++||.| ..|.|+.+ +|||||+|.+.++|++||+. ++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 78888764 79999999999999999997 9999999999999
Q ss_pred ecCCC
Q 030481 125 YGNQW 129 (176)
Q Consensus 125 ~a~~~ 129 (176)
++++.
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99744
No 141
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=8e-19 Score=132.57 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC--CeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
..++|||+||+.++++++|+++|++|| .|.+|+|+.+ ||||||+|.+.++|++||+.||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999875 58999999999999999999999999999999999
Q ss_pred cC
Q 030481 126 GN 127 (176)
Q Consensus 126 a~ 127 (176)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 142
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-18 Score=112.19 Aligned_cols=79 Identities=28% Similarity=0.382 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE-EEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~-i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....++|||+|||+++++++|+++|++||.|.. |.|+.+ +|||||+|.+.++|++|++. ++..|.||.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 777653 79999999999999999997 9999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
+++...
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987553
No 143
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=2.7e-18 Score=110.32 Aligned_cols=72 Identities=22% Similarity=0.459 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccc----C-------CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~----G-------~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
.+.++|||+|||.++++++|+++|++| | .|.++.+..++|||||+|.+.++|++|+ .||+..+.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 367899999999999999999999999 8 9999999999999999999999999999 899999999999
Q ss_pred EEee
Q 030481 122 RADY 125 (176)
Q Consensus 122 ~v~~ 125 (176)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 144
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=3.1e-18 Score=123.10 Aligned_cols=82 Identities=22% Similarity=0.441 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 49 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
+....+.++|||+|||..+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+||+.|||..|.|+.|+
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334456789999999999999999999999999999999875 69999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|.|+++..
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 99998664
No 145
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=2.9e-18 Score=117.31 Aligned_cols=78 Identities=26% Similarity=0.504 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
.....++|||+|| ++++++|+++|++||.|..|.+...+|||||+|.+.++|++|++.|++..|.|+.|+|.|+++..
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 3456889999996 69999999999999999999999889999999999999999999999999999999999998664
No 146
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-20 Score=125.63 Aligned_cols=82 Identities=28% Similarity=0.436 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE--------EEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG 117 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~ 117 (176)
..+.++|||+|||.++++++|+++|++||.|.. |.++.+ +|||||+|.+.++|++|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999988 777764 689999999999999999999999999
Q ss_pred CeEeEEeecCCCCCCC
Q 030481 118 KQSFRADYGNQWSGAY 133 (176)
Q Consensus 118 g~~l~v~~a~~~~~~~ 133 (176)
|+.|+|.++++.....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998776443
No 147
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=1.4e-18 Score=124.85 Aligned_cols=100 Identities=22% Similarity=0.512 Sum_probs=84.3
Q ss_pred CccCCcccC---CcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcc
Q 030481 2 TEMNGVYCS---SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ 78 (176)
Q Consensus 2 ~~mng~~l~---gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~ 78 (176)
+.|||..+. ++.|.+.++...... ....++|||+|||.++++++|+++|++
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 65 NALHNMKVLPGMHHPIQMKPADSEKNN--------------------------AVEDRKLFIGMISKKCTENDIRVMFSS 118 (175)
T ss_dssp HHHTTTCCCTTCSSCCEEEECGGGCCS--------------------------CGGGSEEEEESCCTTCCHHHHHHHHGG
T ss_pred HHhcCcEEccCCccceEEccccccccc--------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHh
Confidence 457887665 577777776544322 235789999999999999999999999
Q ss_pred cCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeC---CeEeEEeecC
Q 030481 79 YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG---KQSFRADYGN 127 (176)
Q Consensus 79 ~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~---g~~l~v~~a~ 127 (176)
||.|..+.++.+ +|||||+|.+.++|.+|++.|||..+. +++|+|.||.
T Consensus 119 ~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 119 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp GSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999876 689999999999999999999998775 4999999984
No 148
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=111.74 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEE-EeCC--CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-IPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~-~~~~--rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
....++|||+|||.++++++|+++|++||.|..++ ++.+ .+.|||+|.+.++|++|++.|||..|.|+.|+|.++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 7766 35699999999999999999999999999999999987
Q ss_pred C
Q 030481 129 W 129 (176)
Q Consensus 129 ~ 129 (176)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=108.98 Aligned_cols=77 Identities=25% Similarity=0.381 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCc-EEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg-~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
...++|||+|||.++++++|+++|++||.|.+|.+....+ ||||+|.+.++|++|++ |++..|+|+.|+|.++.+..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 3568999999999999999999999999999983333222 99999999999999999 99999999999999987654
No 150
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=112.71 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.....++|||+|||+++++++|+++|++||.+ .|.|+.+ +|||||+|.+.++|++||+ ++++.|.||.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999954 8888765 6899999999999999995 799999999999999
Q ss_pred cCCCC
Q 030481 126 GNQWS 130 (176)
Q Consensus 126 a~~~~ 130 (176)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88664
No 151
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=3.7e-18 Score=116.23 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCC---eEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~---i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....++|||+|||+++++++|+++|+.||. |..|+|+.+ +|||||+|.+.++|++||+ ++++.|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 888888765 6899999999999999999 9999999999999
Q ss_pred eecCC
Q 030481 124 DYGNQ 128 (176)
Q Consensus 124 ~~a~~ 128 (176)
.+++.
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99863
No 152
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=1.1e-18 Score=109.28 Aligned_cols=69 Identities=29% Similarity=0.530 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
+|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++ +++..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999988765 5899999999999999998 9999999999999986
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=5.1e-18 Score=116.92 Aligned_cols=78 Identities=27% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcE-EEEEecCHHHHHHHHHhhCCeeeCC--eEeEEeecCC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGC-GFVQFANRENAEEALHKLNGTVIGK--QSFRADYGNQ 128 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~-afV~f~~~~~a~~ai~~l~g~~~~g--~~l~v~~a~~ 128 (176)
....+|||+||+..+++++|+++|++||.|.+|.+..+ ++| |||+|.+.++|++|++.|||..|.| +.|+|+|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 34567889999999999999999999999999988654 677 9999999999999999999999988 9999999987
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=5.6e-19 Score=126.20 Aligned_cols=96 Identities=20% Similarity=0.393 Sum_probs=84.7
Q ss_pred CcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEE
Q 030481 6 GVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (176)
Q Consensus 6 g~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i 85 (176)
+..|+|+.|+|.++.++... ...++|||+|||.++++++|+++|++||.|..+
T Consensus 65 ~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 65 QHILDGKVIDPKRAIPRDEQ---------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp CCEETTEECCCEECCCHHHH---------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE
T ss_pred ccccCCeEcccccccchhhc---------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE
Confidence 45789999999988654321 246799999999999999999999999999999
Q ss_pred EEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 86 KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 86 ~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.++.+ +|||||+|.+.++|.+|++ +++..+.|+.|+|.||+++
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 98875 5899999999999999998 8999999999999999875
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=7.8e-18 Score=125.12 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 54 SNTTIFVGGLD-PNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 54 ~~~~l~v~~L~-~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
++++|||+||+ ..+++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++||+.|||..+.|+.|+|.+++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 57899999999 89999999999999999999999986 799999999999999999999999999999999999754
No 156
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.6e-18 Score=109.16 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=66.5
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHhhccc-CCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTT-IFVGGLDPNVTDED----LRQPFSQY-GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~-l~v~~L~~~~~~~~----l~~~F~~~-G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
++.+ |||+|||+++++++ |+++|++| |+|.+|. .|+|||.|.+.++|++|++.|+|..+.||+|+|.||+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 4555 99999999999987 55899999 4999982 4999999999999999999999999999999999999
Q ss_pred CCCC
Q 030481 128 QWSG 131 (176)
Q Consensus 128 ~~~~ 131 (176)
..++
T Consensus 83 ~~sd 86 (96)
T 2diu_A 83 KNRE 86 (96)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7764
No 157
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=108.37 Aligned_cols=70 Identities=26% Similarity=0.537 Sum_probs=66.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
++|||+|||.++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|++.++ ..++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999875 5899999999999999999999 9999999999987
No 158
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=109.55 Aligned_cols=70 Identities=26% Similarity=0.452 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHhhCCeeeCCe-EeEE
Q 030481 55 NTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQ-SFRA 123 (176)
Q Consensus 55 ~~~l~v~~L~~~~------~~~~l~~~F~~~G~i~~i~~~~~----rg~afV~f~~~~~a~~ai~~l~g~~~~g~-~l~v 123 (176)
+++|||+|||..+ ++++|+++|++||.|..+.++.. +|||||+|.+.++|++|++.|||..+.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4689999999999 67999999999999999998742 79999999999999999999999999999 8876
Q ss_pred e
Q 030481 124 D 124 (176)
Q Consensus 124 ~ 124 (176)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=108.89 Aligned_cols=77 Identities=27% Similarity=0.459 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCCCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWSGA 132 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~~~ 132 (176)
.+++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++++.. ...+.|+.|+|.+++++...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 5789999999999999999999999999999999876 89999999999999865332 34569999999999877643
No 160
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=6.5e-19 Score=114.09 Aligned_cols=74 Identities=32% Similarity=0.514 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.+ |.+|+..||+..++|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999865 689999999999 99999999999999999999999865
Q ss_pred C
Q 030481 130 S 130 (176)
Q Consensus 130 ~ 130 (176)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 161
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-18 Score=117.68 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeC------CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~------~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
....++|||+|||.++++++|+++|+.||.|..+.++. .+|||||+|.+.++|++||+ ||+..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 45678999999999999999999999999987633332 16999999999999999999 999999999999999
Q ss_pred cCC
Q 030481 126 GNQ 128 (176)
Q Consensus 126 a~~ 128 (176)
++.
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 874
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=107.89 Aligned_cols=76 Identities=32% Similarity=0.469 Sum_probs=62.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCee--eCCeEeEEeecC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV--IGKQSFRADYGN 127 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~--~~g~~l~v~~a~ 127 (176)
.....++|||+|||+++++++|+++|++||.|.+|.++.+ ||||||+|.+.++|++ +++.. +.|+.|+|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 3457899999999999999999999999999999999876 8999999999999984 45544 569999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 163
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=4.5e-18 Score=118.55 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC---eEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEe
Q 030481 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSF 121 (176)
Q Consensus 50 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~---i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l 121 (176)
......++|||+|||+++++++|+++|++||. |..|.|+.+ +|||||+|.+.++|++|++ +++..|+||.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456889999999999999999999999998 888888765 6899999999999999999 99999999999
Q ss_pred EEeecCC
Q 030481 122 RADYGNQ 128 (176)
Q Consensus 122 ~v~~a~~ 128 (176)
+|.++++
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999864
No 164
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=111.46 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
.+.++|||+|||+++++++|+++|+.| .|..|.|+.+ +|||||+|.+.++|++|+ .++++.|+||.|+|..++
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 446799999999999999999999999 8999999865 799999999999999999 599999999999999886
Q ss_pred C
Q 030481 128 Q 128 (176)
Q Consensus 128 ~ 128 (176)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 165
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.74 E-value=3.7e-18 Score=129.16 Aligned_cols=80 Identities=28% Similarity=0.527 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeee------
Q 030481 52 DSSNTTIFVGGLDPNV---------TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI------ 116 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~---------~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~------ 116 (176)
+..+++|||+||+..+ ++++|+++|++||.|.+|+|+.+||||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4578999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCeEeEEeecCCCCC
Q 030481 117 ------GKQSFRADYGNQWSG 131 (176)
Q Consensus 117 ------~g~~l~v~~a~~~~~ 131 (176)
.|+.|.|.||+..+.
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 166
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=108.78 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEe------CCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~------~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
....++|||+|||.++++++|+++|++||.|.. .++ ..+|||||+|.+.++|++|++ |++..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999997765 333 348999999999999999999 999999999999999
Q ss_pred cCCCC
Q 030481 126 GNQWS 130 (176)
Q Consensus 126 a~~~~ 130 (176)
++++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98765
No 167
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=3.8e-17 Score=133.90 Aligned_cols=78 Identities=21% Similarity=0.437 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
....++|||+|||..+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|.|+.|+|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999865 69999999999999999999999999999999999
Q ss_pred cCCC
Q 030481 126 GNQW 129 (176)
Q Consensus 126 a~~~ 129 (176)
+++.
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 9864
No 168
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=113.25 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCC---eEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~---i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
....++|||+|||+++++++|+++|+.||. |..|.|+.+ +|||||+|.+.++|++|++ +++..++|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456889999999999999999999999988 889988765 6899999999999999999 9999999999999
Q ss_pred eecCC
Q 030481 124 DYGNQ 128 (176)
Q Consensus 124 ~~a~~ 128 (176)
.++++
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99874
No 169
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=3.4e-18 Score=119.53 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.....++|||+|||+++++++|+++|++|| |..|.|+.+ +|||||+|.+.++|++|| .+++..|.||.|+|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 679988865 689999999999999999 6899999999999999
Q ss_pred cCCCC
Q 030481 126 GNQWS 130 (176)
Q Consensus 126 a~~~~ 130 (176)
+++..
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88654
No 170
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=3.6e-17 Score=121.94 Aligned_cols=77 Identities=30% Similarity=0.469 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
.+.++|||+|||.++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999999999999865 589999999999999999999999999999999998
Q ss_pred CCC
Q 030481 127 NQW 129 (176)
Q Consensus 127 ~~~ 129 (176)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 744
No 171
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=119.77 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
.....++|||+|||.++++++|+++|++||.|..|.|..+ +|||||+|.+.++|++|++.|++..|+|+.|+|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3455789999999999999999999999999999999874 69999999999999999999999999999999999
Q ss_pred cCCC
Q 030481 126 GNQW 129 (176)
Q Consensus 126 a~~~ 129 (176)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9754
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=3.2e-17 Score=126.88 Aligned_cols=96 Identities=16% Similarity=0.372 Sum_probs=87.2
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+.|||..|.|+.|+|.++. ..++|||+|||.++++++|+++|++||.
T Consensus 75 ~~l~~~~~~g~~i~v~~~~---------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 121 (284)
T 3smz_A 75 NAFHQSRLRERELSVQLQP---------------------------------TDALLCVANLPPSLTQQQFEELVRPFGS 121 (284)
T ss_dssp HHHTTCEETTEECEEEECC---------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCeeCCeEEEEEecC---------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCC
Confidence 4689999999999999742 3479999999999999999999999999
Q ss_pred eEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 82 i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
|..+.++.+ +|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.+..
T Consensus 122 i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 122 LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 999988764 5899999999999999999999999999999999997653
No 173
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=115.47 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEE--------EEEe---CCCcEEEEEecCHHHHHHHHHhhCCeeeCCeE
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIP---VGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------i~~~---~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~ 120 (176)
..++++|||+|||.++++++|+++|++||.|.. +.+. ..+|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999998765 3333 24799999999999999999999999999999
Q ss_pred eEEeecCCCC
Q 030481 121 FRADYGNQWS 130 (176)
Q Consensus 121 l~v~~a~~~~ 130 (176)
|+|.|++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 174
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=7.7e-18 Score=105.28 Aligned_cols=69 Identities=29% Similarity=0.651 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
+|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++. ++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999988764 68999999999999999995 999999999999875
No 175
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=4.8e-17 Score=111.81 Aligned_cols=76 Identities=34% Similarity=0.457 Sum_probs=67.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeE--EEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~--~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
.....++|||+|||+++++++|+++|++| .|. .|.|+.+ +|||||+|.+.++|++||+. ++..|+||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567899999999999999999999999 677 8888865 79999999999999999995 789999999999
Q ss_pred eecCC
Q 030481 124 DYGNQ 128 (176)
Q Consensus 124 ~~a~~ 128 (176)
..+++
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=1.4e-16 Score=113.37 Aligned_cols=76 Identities=34% Similarity=0.584 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCC------cEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~r------g~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
.++|||+|||.++++++|+++|++||.|..+.++.++ |+|||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999998764 8999999999999999999999999999999999986
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 177
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=4.5e-17 Score=125.00 Aligned_cols=95 Identities=34% Similarity=0.538 Sum_probs=84.7
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+.|||..|.|+.|+|.++. +.++|||+|||..+++++|+++|+.||.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~---------------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFAT---------------------------------HGAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp HHHTTCEETTEECEEEECC---------------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCcEECCceeEeeecc---------------------------------cCCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999984 2468999999999999999999999999
Q ss_pred eEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhC-CeeeC---CeEeEEeecCCC
Q 030481 82 IASVKIPVG-----KGCGFVQFANRENAEEALHKLN-GTVIG---KQSFRADYGNQW 129 (176)
Q Consensus 82 i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~-g~~~~---g~~l~v~~a~~~ 129 (176)
|..|.++.+ +|||||+|.+.++|.+|+..|+ +..+. +++|.|.++.+.
T Consensus 123 i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 123 VEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred eEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999998865 7999999999999999999995 44554 999999999854
No 178
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.8e-17 Score=109.64 Aligned_cols=77 Identities=26% Similarity=0.482 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
....++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346789999999999999999999999999999999874 6999999999999999999 999999999999998
Q ss_pred CCCC
Q 030481 127 NQWS 130 (176)
Q Consensus 127 ~~~~ 130 (176)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7554
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=2.3e-16 Score=121.06 Aligned_cols=78 Identities=31% Similarity=0.601 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
.....++|||+|||.++++++|+++|+.||.|..|.+.+++|||||+|.+.++|.+|+..|++..|.|+.|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999999875
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.5e-16 Score=123.57 Aligned_cols=94 Identities=15% Similarity=0.302 Sum_probs=85.3
Q ss_pred ccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccC-C
Q 030481 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG-E 81 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G-~ 81 (176)
+|||..|.|+.|+|.++ ..++|||+|||.++++++|+++|++|| .
T Consensus 99 ~~~~~~~~g~~i~v~~~----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~ 144 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHL----------------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVV 144 (292)
T ss_dssp TTTTCEETTEECEEEEC----------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCC
T ss_pred HhCCcEeCCcEEEEEEC----------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCC
Confidence 48999999999999975 367999999999999999999999999 9
Q ss_pred eEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 82 IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 82 i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
|..+.++.+ +|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+..
T Consensus 145 i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 145 ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp CCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred eEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 999998763 6999999999999999999999999999999999998653
No 181
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1.4e-16 Score=113.63 Aligned_cols=77 Identities=27% Similarity=0.474 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
++++|||+|||.++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|++.|++..+.|+.|+|.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999998764 4899999999999999999999999999999999998
Q ss_pred CCC
Q 030481 128 QWS 130 (176)
Q Consensus 128 ~~~ 130 (176)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 182
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=111.26 Aligned_cols=75 Identities=25% Similarity=0.293 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCe----EEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i----~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
...++|||+|||+++++++|+++|++||.| ..|.|+.+ +|||||+|.+.++|++||+. +++.|.||.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 467899999999999999999999999875 57777754 69999999999999999996 999999999999
Q ss_pred eecCC
Q 030481 124 DYGNQ 128 (176)
Q Consensus 124 ~~a~~ 128 (176)
..+++
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88863
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=3.6e-16 Score=120.78 Aligned_cols=80 Identities=26% Similarity=0.486 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HhhcccCCeEEEEEeC---CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~i~~~~---~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
...++++|||+|||.++++++|+ ++|++||.|.+|.+++ .+|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34578999999999999999976 8999999999999876 3799999999999999999999999999999999
Q ss_pred eecCCCC
Q 030481 124 DYGNQWS 130 (176)
Q Consensus 124 ~~a~~~~ 130 (176)
.|++...
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997654
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=1.9e-16 Score=119.25 Aligned_cols=79 Identities=29% Similarity=0.470 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 51 GDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
...++++|||+|||. ++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.|++..+.|+.|+|.+++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345789999999999 9999999999999999999999988 59999999999999999999999999999999999985
Q ss_pred C
Q 030481 129 W 129 (176)
Q Consensus 129 ~ 129 (176)
.
T Consensus 110 ~ 110 (229)
T 2adc_A 110 Q 110 (229)
T ss_dssp C
T ss_pred c
Confidence 5
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.3e-16 Score=111.27 Aligned_cols=75 Identities=31% Similarity=0.504 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCCC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQWS 130 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~~ 130 (176)
++|||+|||.++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999865 5899999999999999999999999999999999997654
No 186
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=4e-16 Score=114.03 Aligned_cols=79 Identities=24% Similarity=0.443 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
.....++|||+|||.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 4457889999999999999999999999999999999865 58999999999999999985 9999999999999
Q ss_pred ecCCCC
Q 030481 125 YGNQWS 130 (176)
Q Consensus 125 ~a~~~~ 130 (176)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987553
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-15 Score=102.01 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHhhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHhhCCeeeC
Q 030481 51 GDSSNTTIFVGGLDPNVT-----------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIG 117 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~-----------~~~l~~~F~~~G~i~~i~~~~--~rg~afV~f~~~~~a~~ai~~l~g~~~~ 117 (176)
...++++|+|.||..... +++|+++|++||.|.+|.|.. .+|||||+|.+.++|++|++.|||..++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345788999999954332 579999999999999997643 3799999999999999999999999999
Q ss_pred CeEeEEeecCCCC
Q 030481 118 KQSFRADYGNQWS 130 (176)
Q Consensus 118 g~~l~v~~a~~~~ 130 (176)
|+.|+|.|+++..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999998764
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.1e-15 Score=101.83 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHhhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHhhCCeeeCCeE
Q 030481 53 SSNTTIFVGGLDP-----NVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (176)
Q Consensus 53 ~~~~~l~v~~L~~-----~~~~~~l~~~F~~~G~i~~i~~~~~-------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~ 120 (176)
.++++|+|.||.. +.++++|+++|++||.|.++.|+.+ +||+||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3678999999963 2368999999999999999998753 699999999999999999999999999999
Q ss_pred eEEeecCC
Q 030481 121 FRADYGNQ 128 (176)
Q Consensus 121 l~v~~a~~ 128 (176)
|+|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=1.1e-15 Score=109.51 Aligned_cols=76 Identities=21% Similarity=0.454 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc----C-------CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~----G-------~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
+.++|||+|||.++++++|+++|++| | .|..+.+..++|||||+|.+.++|++|+ .+++..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 57899999999999999999999999 7 8899999999999999999999999999 7999999999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|.+++...
T Consensus 82 v~~~~~~~ 89 (172)
T 2g4b_A 82 IRRPHDYQ 89 (172)
T ss_dssp EECCSSCC
T ss_pred ecCCcccC
Confidence 99987653
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=115.09 Aligned_cols=76 Identities=30% Similarity=0.481 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCCC
Q 030481 54 SNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 54 ~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~~ 129 (176)
.+++|||+|||. ++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.|++..+.|+.|+|.+++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 9999999999999999999999987 699999999999999999999999999999999999754
No 191
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=8.6e-16 Score=113.88 Aligned_cols=77 Identities=23% Similarity=0.505 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
...++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35689999999999999999999999999999999764 699999999999999999999999999999999987
Q ss_pred CCC
Q 030481 127 NQW 129 (176)
Q Consensus 127 ~~~ 129 (176)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 754
No 192
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.3e-15 Score=112.07 Aligned_cols=76 Identities=17% Similarity=0.368 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
..++|||+|||.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..+ +..++|+.|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4589999999999999999999999999999998863 699999999999999999865 5699999999999987
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
+.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 64
No 193
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=102.55 Aligned_cols=72 Identities=21% Similarity=0.479 Sum_probs=60.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEE
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRA 123 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~---------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v 123 (176)
...++|||+|||.++++++|+++|++||.|. +.++.+ +|||||+|.+.++|++|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3578999999999999999999999999999 766542 7899999999999999999883 366666665
Q ss_pred eecC
Q 030481 124 DYGN 127 (176)
Q Consensus 124 ~~a~ 127 (176)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1.5e-15 Score=111.14 Aligned_cols=76 Identities=20% Similarity=0.439 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc----C-------CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~----G-------~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
..++|||+|||.++++++|+++|++| | .|..+.+..++|||||+|.+.++|++|+ .|++..|.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 47899999999999999999999999 6 7888888889999999999999999999 7999999999999
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
|.+++...
T Consensus 82 v~~~~~~~ 89 (198)
T 2yh0_A 82 IRRPHDYQ 89 (198)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99998653
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.6e-16 Score=105.02 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=64.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecC----HHH----HHHHHH--hhCCee
Q 030481 56 TTIFVGGL----DPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN----REN----AEEALH--KLNGTV 115 (176)
Q Consensus 56 ~~l~v~~L----~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~----~~~----a~~ai~--~l~g~~ 115 (176)
.+|||+|| ++.+++.+|+++|++||+|.++.++.| +|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999886 6999999996 322 888988 789999
Q ss_pred eCCeEeEEeecC
Q 030481 116 IGKQSFRADYGN 127 (176)
Q Consensus 116 ~~g~~l~v~~a~ 127 (176)
|+|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 196
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=2.9e-15 Score=107.33 Aligned_cols=77 Identities=27% Similarity=0.478 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC--------CcEEEEEecCHHHHHHHHHhhCCeeeC---CeEeE
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIG---KQSFR 122 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~--------rg~afV~f~~~~~a~~ai~~l~g~~~~---g~~l~ 122 (176)
+.++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999998743 589999999999999999999998875 67888
Q ss_pred EeecCCCC
Q 030481 123 ADYGNQWS 130 (176)
Q Consensus 123 v~~a~~~~ 130 (176)
+.+++...
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877543
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=4.7e-15 Score=105.65 Aligned_cols=73 Identities=23% Similarity=0.558 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~------rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
++++|||+|||.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++. ++.+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999999875 58999999999999999994 678999999999886
Q ss_pred C
Q 030481 128 Q 128 (176)
Q Consensus 128 ~ 128 (176)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 198
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=6.8e-15 Score=116.71 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeC---Ce--EeEE
Q 030481 51 GDSSNTTIFVGG--LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG---KQ--SFRA 123 (176)
Q Consensus 51 ~~~~~~~l~v~~--L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~---g~--~l~v 123 (176)
...++.+|||+| |+..+++++|+++|++||+|.+|.+..+||||||+|++.++|++|++.|||+.+. |+ .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 356788999998 5789999999999999999999999889999999999999999999999999872 45 6788
Q ss_pred eecC
Q 030481 124 DYGN 127 (176)
Q Consensus 124 ~~a~ 127 (176)
.|.+
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8874
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=1.3e-14 Score=104.20 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=68.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeE-----EEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEee
Q 030481 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-----SVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADY 125 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~-----~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 125 (176)
...+.++|||+|||.++++++|+++|++||.+. .......+|||||+|.+.++|++|++ |++..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 455789999999999999999999999997543 33444468999999999999999995 999999999999999
Q ss_pred cCCCC
Q 030481 126 GNQWS 130 (176)
Q Consensus 126 a~~~~ 130 (176)
++...
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 98653
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.4e-14 Score=96.43 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=65.6
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHhhcccCCeEEEEEeCC--------CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 54 SNTTIFVGGL--DPNVT--------DEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 54 ~~~~l~v~~L--~~~~~--------~~~l~~~F~~~G~i~~i~~~~~--------rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
+++.|.|.|+ +.++. +++|++.|++||.|.++.|+++ +|++||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6788999998 33333 3689999999999999999864 6999999999999999999999999
Q ss_pred eCCeEeEEeecCC
Q 030481 116 IGKQSFRADYGNQ 128 (176)
Q Consensus 116 ~~g~~l~v~~a~~ 128 (176)
++||.|+|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999753
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-13 Score=91.09 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=62.5
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHhhcccCCeEEEEEeC-CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeec
Q 030481 55 NTTIFVGGLD-------PNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYG 126 (176)
Q Consensus 55 ~~~l~v~~L~-------~~~~~~~l~~~F~~~G~i~~i~~~~-~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 126 (176)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.+++ +.++.|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4566564332 4589999999999999999999984 489999999999999999997544 67999999999
Q ss_pred CCCCC
Q 030481 127 NQWSG 131 (176)
Q Consensus 127 ~~~~~ 131 (176)
++...
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87653
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=5.6e-15 Score=98.23 Aligned_cols=67 Identities=27% Similarity=0.509 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHhh------------cccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 60 VGGLDPNVTDEDLRQPF------------SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 60 v~~L~~~~~~~~l~~~F------------~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
+.+|+..+++++|++.| ++||.|.+|.|+++ +|||||+|.+.++|.+|++.|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777777777666 99999999999875 69999999999999999999999999999999
Q ss_pred Eeec
Q 030481 123 ADYG 126 (176)
Q Consensus 123 v~~a 126 (176)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=9.4e-14 Score=94.29 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHhhcccCCeEEEEEeCC----------CcEEEEEecCHHHHHHHHHhhCCeeeCC
Q 030481 54 SNTTIFVGGLDP--N---VTDEDLRQPFSQYGEIASVKIPVG----------KGCGFVQFANRENAEEALHKLNGTVIGK 118 (176)
Q Consensus 54 ~~~~l~v~~L~~--~---~~~~~l~~~F~~~G~i~~i~~~~~----------rg~afV~f~~~~~a~~ai~~l~g~~~~g 118 (176)
++++|+|.|+-. + --+++|++.|++||.|.+|.|+.+ +|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999842 2 236899999999999999998764 3899999999999999999999999999
Q ss_pred eEeEEeecC
Q 030481 119 QSFRADYGN 127 (176)
Q Consensus 119 ~~l~v~~a~ 127 (176)
|.|+|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999975
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.49 E-value=2e-13 Score=92.05 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHhhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHhhCCeeeCCeE
Q 030481 53 SSNTTIFVGGLDPNVT----------DEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~----------~~~l~~~F~~~G~i~~i~~~~~--rg~afV~f~~~~~a~~ai~~l~g~~~~g~~ 120 (176)
.+++.|.+.|+=.... +++|++.|++||.|.+|.+.++ +|++||+|.+.++|.+|++.|||..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3577888888743211 2588999999999999999876 799999999999999999999999999999
Q ss_pred eEEeecC
Q 030481 121 FRADYGN 127 (176)
Q Consensus 121 l~v~~a~ 127 (176)
|+|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=82.68 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCCC----C-CCH---HHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 53 SSNTTIFVGGLDP----N-VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 53 ~~~~~l~v~~L~~----~-~~~---~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
++..+|+|.-++. . .++ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ |+|..+.||.|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 4567888877652 2 332 6789999999999999999776 8999999999999999 99999999999999
Q ss_pred ecCC
Q 030481 125 YGNQ 128 (176)
Q Consensus 125 ~a~~ 128 (176)
++++
T Consensus 82 lkt~ 85 (91)
T 2dnr_A 82 LKSP 85 (91)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9984
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.7e-12 Score=85.82 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecC-HHHHHHHHHhhC--CeeeCCeEeEEeec
Q 030481 51 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN-RENAEEALHKLN--GTVIGKQSFRADYG 126 (176)
Q Consensus 51 ~~~~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~-~~~a~~ai~~l~--g~~~~g~~l~v~~a 126 (176)
..+.++.|||+||+.+ ++.++|+++|++||.|..|.+..+.-.|||.|.+ .++|..|++.|+ +..|.|..++++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4567999999999999 9999999999999999999999998899999999 899999999994 67789988888765
Q ss_pred C
Q 030481 127 N 127 (176)
Q Consensus 127 ~ 127 (176)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.3e-11 Score=78.21 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCC------CCH---HHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeE
Q 030481 52 DSSNTTIFVGGLDPN------VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFR 122 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~------~~~---~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~ 122 (176)
-++..+|+|.-++.. .++ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+||+ |+|..+.||.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 356788999887642 332 5688999999999999999877 9999999999999999 999999999999
Q ss_pred EeecC
Q 030481 123 ADYGN 127 (176)
Q Consensus 123 v~~a~ 127 (176)
|++..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 99865
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.3e-09 Score=69.62 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc-----CCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEe
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRAD 124 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~-----G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 124 (176)
..++|-+-+||+.+++..|+.+.+++ |.+.+|.+..+.+-|+|+|.|...|.+|.-.|+|..|+||+|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46788889999999999999999999 999999999999999999999999999999999999999999985
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=1e-09 Score=81.83 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=55.6
Q ss_pred CCHHHHHHhhcccCCeEEEEEeC----------CCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 67 VTDEDLRQPFSQYGEIASVKIPV----------GKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 67 ~~~~~l~~~F~~~G~i~~i~~~~----------~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
-.+++|++.|++||.|.++.+.. .+|++||+|.+.++|.+|++.|||..+.||.|++.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45679999999999999999872 36899999999999999999999999999999999975
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=1.9e-06 Score=56.23 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 54 SNTTIFVGGLDPNV-TD----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 54 ~~~~l~v~~L~~~~-~~----~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
-.++|+|.||+.++ .. +.++++|..|+++......++-.-..|.|.+.++|.+|-..|++..+.|++++|-|+.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35689999998753 22 57799999999988888888756689999999999999999999999999999999984
Q ss_pred C
Q 030481 129 W 129 (176)
Q Consensus 129 ~ 129 (176)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.1e-05 Score=50.29 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc-----CCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGNQ 128 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~-----G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~~ 128 (176)
...+|.|.|||.+++++.|+-+|++- |+|..+.... +-|+|+|.+.+.|++.++. ..+.|.+.+|.|.=.-+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 56899999999999999999999872 5788888775 7899999999999999883 47888999998865444
Q ss_pred CC
Q 030481 129 WS 130 (176)
Q Consensus 129 ~~ 130 (176)
..
T Consensus 84 ~~ 85 (104)
T 2dhx_A 84 RA 85 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=6.9e-05 Score=50.09 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=59.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCC-eEeEEee
Q 030481 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-QSFRADY 125 (176)
Q Consensus 52 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g-~~l~v~~ 125 (176)
....+.|.|-+.|... ...+...|++||.|.+........+-.|.|.+..+|++||.. ||..|.+ -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 4457889999999985 466777899999999988755678999999999999999994 9999985 5555554
No 213
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.83 E-value=3.1e-06 Score=56.44 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=20.8
Q ss_pred CCccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDED 71 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~ 71 (176)
|++|||.+|+||+|+|+++.++..+... ........++|||+|||+++|++.
T Consensus 62 i~~l~~~~~~g~~i~V~~a~~~~~~~~~-------------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 62 IEKMNGMLLNDRKVFVGRFKSRKEREAE-------------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHHTTCEETTEECEEEESSCCCC-----------------------------------------------
T ss_pred HHHcCCCEECCEEEEEEECCCccccccc-------------------cccccCCCCceEeCCCCCCccccc
Confidence 4578999999999999999877554211 111233456899999999998764
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.76 E-value=0.00013 Score=46.59 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=53.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC--------CcEEEEEecCHHHHHHHHHhhCCeeeC
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIG 117 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~--------rg~afV~f~~~~~a~~ai~~l~g~~~~ 117 (176)
++|.|.+||+.+||+++.+.++....+.......+ -.-|+|.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999999887776666543 257999999999999999999999864
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.35 E-value=0.0015 Score=41.90 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=45.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~ 112 (176)
...+.++| ++|.+..-.||..+|+.||. ..|+++. ---|||.|.+.+.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEE-TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 34566777 99999999999999999983 3334443 3579999999999999998763
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.16 E-value=0.00046 Score=46.75 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=53.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEE-EEEe-------------------CCCcEEEEEecCHHHHHHHHHhhCC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIP-------------------VGKGCGFVQFANRENAEEALHKLNG 113 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~-i~~~-------------------~~rg~afV~f~~~~~a~~ai~~l~g 113 (176)
....|.|-+.|.+... .+.+.|++||.|.+ .... ....|..|+|++..+|.+|+. -||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3456778899887654 45677999999876 2111 125788999999999999999 499
Q ss_pred eeeCCeEeEEeecC
Q 030481 114 TVIGKQSFRADYGN 127 (176)
Q Consensus 114 ~~~~g~~l~v~~a~ 127 (176)
..|.|..|=|..-+
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877665543
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.14 E-value=0.00088 Score=43.05 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCC--------CcEEEEEecCHHHHHHHHHhhCCeeeC
Q 030481 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIG 117 (176)
Q Consensus 54 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~--------rg~afV~f~~~~~a~~ai~~l~g~~~~ 117 (176)
.+-+|.|..||+.+||+++.+.++..-++........ -.-|+|.|.+.++.....+.++|+.+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4678999999999999999888877655443333322 256899999999999999999999864
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.11 E-value=0.00023 Score=58.39 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCc-EEEEEecCHHHHHHHHHh
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHK 110 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg-~afV~f~~~~~a~~ai~~ 110 (176)
.++|+|. ++..+++.+|.++|++||.|..+.+..++| |+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 5789997 899999999999999999999999888876 999999999999977653
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.0016 Score=41.91 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~ 112 (176)
.+.++| ++|.+..-.||..+|+.|| -..|.++.| --|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999998 345555544 579999999999999998764
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.85 E-value=0.00029 Score=45.30 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=32.1
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDP 65 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~ 65 (176)
+.|||..|+|+.|+|+++.++...... ...........+|||+||+.
T Consensus 55 ~~l~g~~~~g~~l~V~~a~~~~~~~~~-----------------~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 55 RGLDGKVICGSRVRVELSTGMPRRSRF-----------------DRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp HHHHHSCSSSCCCEEEESSSCCCSSCC-----------------CSCCCSCCCCSCCCSCCCCC
T ss_pred HHHCCCeECCcEEEEEEccCCCCcccC-----------------CCCCccccCCCceecCCCCC
Confidence 468999999999999999887543211 00111224577899999973
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.72 E-value=0.0029 Score=43.63 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=35.3
Q ss_pred CcEEEEEecCHHHHHHHHHhh-CCeeeCCeEeEEeecCCC
Q 030481 91 KGCGFVQFANRENAEEALHKL-NGTVIGKQSFRADYGNQW 129 (176)
Q Consensus 91 rg~afV~f~~~~~a~~ai~~l-~g~~~~g~~l~v~~a~~~ 129 (176)
+|+++|+|.+.++|++|++.+ |+..++| .+++.+++..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 799999999999999999999 9999999 9999998753
No 222
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.49 E-value=0.00056 Score=45.04 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=37.0
Q ss_pred CccCCcccCCcceeeecCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 81 (176)
+.|||..|+|+.|+|.++.++... .+++...++++|+++|++||.
T Consensus 65 ~~l~g~~~~g~~l~v~~a~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 65 DHLSGFNVSNRYLVVLYYNANRAF-----------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHTTCBSSSCBCEEEECCHHHHT-----------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred HHcCCCEECCeEEEEEEecCChhh-----------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 468999999999999999755321 467778889999999999983
No 223
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.58 E-value=0.016 Score=39.98 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.7
Q ss_pred CcEEEEEecCHHHHHHHHHhhCCe
Q 030481 91 KGCGFVQFANRENAEEALHKLNGT 114 (176)
Q Consensus 91 rg~afV~f~~~~~a~~ai~~l~g~ 114 (176)
+||+||+|.+.++|++|++.+++.
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhccc
Confidence 799999999999999999887754
No 224
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.0098 Score=38.07 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=22.3
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|++|||..|.||+|+|++|..+...
T Consensus 63 ~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 63 QKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp HHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred HHHhcCCccCCceEEEEecCCCcce
Confidence 4679999999999999999988765
No 225
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=92.58 E-value=0.082 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|+.|+|.++.++...
T Consensus 63 ~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 63 EEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHCCCccCCCEEEEEEcCCCccc
Confidence 468999999999999999887654
No 226
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.09 E-value=0.11 Score=32.43 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.4
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|+.|||..|+|+.|+|+++.++...
T Consensus 65 ~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 65 IEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp HHTTTTCEETTEECEEEESCCCCCC
T ss_pred HHHcCCCEECCEEEEEEEecccCCC
Confidence 3569999999999999999887654
No 227
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=91.06 E-value=0.17 Score=32.70 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|+.|||..|+|+.|+|.++.++...
T Consensus 74 ~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 74 IQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HHHTTTCEETTEECEEEESSCCCCC
T ss_pred HHHhCCCEECCEEEEEEEccCCCCC
Confidence 3568999999999999999987654
No 228
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=90.68 E-value=0.11 Score=34.00 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|+.|+|+++.++...
T Consensus 66 ~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 66 KDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HHCSSCBCSSSBCEEEECCCSSCS
T ss_pred HHhCCCEECCEEEEEEECCCCCCC
Confidence 569999999999999999877544
No 229
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.11 E-value=1.5 Score=36.40 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCC
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG 113 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g 113 (176)
...++|+ ++..+...+|.++|+.||. .+|.++ +...|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI-DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC-SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE-cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4566665 8888899999999999995 344443 457899999999999999988753
No 230
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.04 E-value=0.079 Score=32.93 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.2
Q ss_pred CCccCC-cccCCcceeeecCCCCCCC
Q 030481 1 MTEMNG-VYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng-~~l~gr~i~v~~a~~~~~~ 25 (176)
|+.||| ..|+|+.|+|+++.++..+
T Consensus 61 ~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 61 IETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHHHTTTCEETTEECEEEECCCCCCC
T ss_pred HHHccCCeeECCEEEEEEEccCcccc
Confidence 356899 9999999999999887554
No 231
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.04 E-value=0.08 Score=32.97 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=20.8
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|++|+|+++.++...
T Consensus 65 ~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 65 EQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp HHHTTCCSSSSCCEEEESSCCCCC
T ss_pred HHhCCCeeCCcEEEEEEcccccCC
Confidence 468999999999999999887554
No 232
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.60 E-value=0.1 Score=32.27 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=20.9
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|++|+|+++.++...
T Consensus 60 ~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 60 RNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HHHTTCBCSSCBCEEECSSCCCCC
T ss_pred HHhcCCccCCcEEEEEECCCCCCC
Confidence 568999999999999999887654
No 233
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.41 E-value=0.16 Score=31.86 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|++|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 68 AEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HHTTTEESSSCEEEEEECCCCSTT
T ss_pred HHhCCCEECCcEEEEEEcCCCccc
Confidence 578999999999999999987654
No 234
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.29 E-value=0.099 Score=32.28 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.6
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|+.|+|.++.++...
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 61 AQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHHTTCEETTEECEEEESCCCCCC
T ss_pred HHhCCCEECCcEEEEEECCCCCCC
Confidence 568999999999999999877543
No 235
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.05 E-value=0.1 Score=32.37 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.7
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|+.|+|+++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCCSC
T ss_pred HHhCCCeeCCcEEEEEEccCCCCC
Confidence 568999999999999999877544
No 236
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.70 E-value=0.19 Score=31.83 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=20.6
Q ss_pred CccCCcc-cCCcceeeecCCCCCCC
Q 030481 2 TEMNGVY-CSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~-l~gr~i~v~~a~~~~~~ 25 (176)
+.|||.. |+|+.|+|.++.++...
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred HHccCCcccCCEeEEEEEccCCCcC
Confidence 5689999 99999999999877654
No 237
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=88.34 E-value=0.09 Score=33.09 Aligned_cols=20 Identities=5% Similarity=0.090 Sum_probs=17.8
Q ss_pred CCccCCcccCCcceeeecCC
Q 030481 1 MTEMNGVYCSSRPMRIGAAT 20 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~ 20 (176)
|+.||+..|+||.|+|++|+
T Consensus 60 i~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 60 QMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHTTEEETTEEEEEECCC
T ss_pred HHHhcCCEECCcEEEEEECC
Confidence 45799999999999999994
No 238
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=87.97 E-value=0.11 Score=32.02 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=17.3
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|+.|||..|+|+.|+|++|.+....
T Consensus 59 ~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 59 IAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp HHTSCSSCCSSSSCSEEEC------
T ss_pred HHHhCCCEECCeEEEEEEcCCCCCC
Confidence 3579999999999999999877543
No 239
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=87.83 E-value=0.11 Score=32.42 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.8
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|+.|+|+++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 62 RNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp HHHTTCEETTEECEEEECSCSSGG
T ss_pred HHhCCCeECCeEEEEEEcCCCCCC
Confidence 568999999999999999887544
No 240
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.17 E-value=0.32 Score=30.15 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=20.0
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|+ |||..|+|+.|+|+++.++...
T Consensus 62 i~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 62 LS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp HT-CSCCEETTEECCCBCSCCSCCC
T ss_pred Hh-cCCeEECCEEEEEEECCcCCCC
Confidence 35 8999999999999998766543
No 241
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=87.10 E-value=0.14 Score=31.56 Aligned_cols=22 Identities=0% Similarity=-0.016 Sum_probs=19.1
Q ss_pred CccCCcccCCcceeeecCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRK 23 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~ 23 (176)
+.|||..++|++|+|+++..+.
T Consensus 58 ~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 58 QMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHTTEEETTEEEEEEECCCCC
T ss_pred HHhCCCeECCcEEEEEEcCCCc
Confidence 5689999999999999997654
No 242
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=87.07 E-value=0.13 Score=33.42 Aligned_cols=24 Identities=0% Similarity=-0.049 Sum_probs=20.1
Q ss_pred CCccCCcccCCcceeeecCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~ 24 (176)
|++|||..|+||.|+|.++.....
T Consensus 65 i~~lng~~~~gr~i~V~~a~~~~~ 88 (110)
T 3s8s_A 65 VKNLHLTSVMGNIIHAQLDIKGQQ 88 (110)
T ss_dssp HHHHTTCEETTEECEEEECSTTHH
T ss_pred HHHhCCCEECCeEEEEEECCCCcH
Confidence 357999999999999999976543
No 243
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=86.90 E-value=0.1 Score=34.34 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=18.9
Q ss_pred CCccCCcccCCcceeeecCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPR 22 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~ 22 (176)
|++|||.+++||.|+|.++...
T Consensus 72 i~~lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 72 VNALHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHTTCEETTEECEEEEECHH
T ss_pred HHHhCCCEECCEEEEEEEEcHH
Confidence 3579999999999999998644
No 244
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.47 E-value=0.17 Score=32.41 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.2
Q ss_pred CCccCCcccCC-----cceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSS-----RPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~g-----r~i~v~~a~~~~~~ 25 (176)
|+.|||..|+| +.|+|+++.++...
T Consensus 67 i~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 67 VRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp HHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred HHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 35799999999 99999999987544
No 245
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.39 E-value=0.2 Score=31.60 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.8
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|+.|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 68 RNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHSSSBSCSSSCBEEEETTCTTHH
T ss_pred HHhCCCeeCCcEEEEEeCCCccch
Confidence 469999999999999999887554
No 246
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=86.34 E-value=0.14 Score=33.27 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|+.|||..|.|+.|+|+++.++...
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 74 IDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 4679999999999999999887544
No 247
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.10 E-value=0.51 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.0
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|+|+.|+|+++......
T Consensus 74 ~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 74 SMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHHTTCEETTEECEEEECSCCCCC
T ss_pred HHhCCCEeCCCEEEEEEcccCCCC
Confidence 468999999999999999765443
No 248
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=85.50 E-value=0.44 Score=31.63 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCccCCc----ccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGV----YCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~----~l~gr~i~v~~a~~~~~~ 25 (176)
|+.|||. .|+||.|+|+++.++...
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 3578999 999999999999877544
No 249
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.36 E-value=0.95 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=19.0
Q ss_pred CCccCCcccCCcceeeecCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~ 24 (176)
|+.||+ +|.|+.|+|+++.....
T Consensus 76 i~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 76 CKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp HTCSSC-EETTEECEEEESTTTCC
T ss_pred HHhCCC-cCCCEEEEEEEcccCCC
Confidence 467888 89999999999986543
No 250
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=85.29 E-value=0.16 Score=33.42 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.7
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||.+|+|+.|+|+++.++...
T Consensus 82 ~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 82 EGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHhCCCeeCCeEEEEEEecCCCCC
Confidence 568999999999999999877554
No 251
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=85.10 E-value=0.13 Score=32.28 Aligned_cols=24 Identities=0% Similarity=-0.050 Sum_probs=19.8
Q ss_pred CccCCcccCCcceeeecCCCCCCC
Q 030481 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 2 ~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
+.|||..|.|++|+|+++.++...
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCCC-
T ss_pred HHcCCCeeCCcEEEEEEcCcCCCC
Confidence 468999999999999999776443
No 252
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.07 E-value=0.49 Score=30.05 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=20.2
Q ss_pred CCccC--CcccCCcceeeecCCCCCCC
Q 030481 1 MTEMN--GVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mn--g~~l~gr~i~v~~a~~~~~~ 25 (176)
|+.|| +..|+|+.|+|+++.++...
T Consensus 69 ~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 69 RRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp HTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred HHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 35685 58999999999999887654
No 253
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.90 E-value=0.22 Score=32.18 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=19.5
Q ss_pred CCccCCcccCCcceeeecCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRK 23 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~ 23 (176)
|+.|||..|+|+.|+|.|+....
T Consensus 63 i~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 63 FRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHhCCCEECCeEEEEEECCCCc
Confidence 35799999999999999987653
No 254
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=81.29 E-value=0.38 Score=32.87 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=20.8
Q ss_pred CCccCCcccCCcceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~ 25 (176)
|+.|||..|+|+.|+|+++.+....
T Consensus 98 i~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 98 MRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp HHHTTTSEETTEECEEEEESCCCTT
T ss_pred HHHhCCCEECCeEEEEEECCCCCCc
Confidence 3568999999999999999876543
No 255
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.89 E-value=0.42 Score=31.86 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.7
Q ss_pred CCccCCcccCC--cceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSS--RPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~g--r~i~v~~a~~~~~~ 25 (176)
|++|||..|.| +.|+|++|.++...
T Consensus 79 ~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 79 KAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp HHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred HHHhCCCEecCCCeEEEEEEecCCcce
Confidence 35799999988 68999999887644
No 256
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=79.85 E-value=0.5 Score=33.14 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.5
Q ss_pred CCccCCcccCC--cceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSS--RPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~g--r~i~v~~a~~~~~~ 25 (176)
|++|||..|.| +.|+|++++++...
T Consensus 101 i~~LnG~~i~g~g~~L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 101 KLSLDGQNIYNACCTLRIDFSKLTSLN 127 (164)
T ss_dssp HHHSTTBCSSSSCSCEEEEECSSSSCC
T ss_pred HHHhCCCEecCCCcEEEEEEecCCccc
Confidence 35799999965 99999999987543
No 257
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=78.40 E-value=0.41 Score=32.23 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.1
Q ss_pred CCccCCcccCC--cceeeecCCCCCCC
Q 030481 1 MTEMNGVYCSS--RPMRIGAATPRKSS 25 (176)
Q Consensus 1 i~~mng~~l~g--r~i~v~~a~~~~~~ 25 (176)
|+.|||..|.| +.|+|++++++.-.
T Consensus 83 i~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 83 KLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp HHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred HHHcCCCeecCCCcEEEEEecCCCcee
Confidence 45799999988 99999999887544
No 258
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.05 E-value=7.3 Score=22.92 Aligned_cols=68 Identities=13% Similarity=0.338 Sum_probs=41.3
Q ss_pred eEEEc-CCCCCCCHHHHHHhhcccC-----CeEEEEEeCCCcEEEEEecCHHHHHHHHHhhCCeeeCCeEeEEeecC
Q 030481 57 TIFVG-GLDPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSFRADYGN 127 (176)
Q Consensus 57 ~l~v~-~L~~~~~~~~l~~~F~~~G-----~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a~ 127 (176)
++||. +=-..+...+|..++..-+ .|-.|.+. -.|.||+-.. +.+..++..|++..+.|+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45553 2223466677777776543 35566665 4578888764 45677888899999999999988764
No 259
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=76.48 E-value=0.9 Score=33.38 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=19.4
Q ss_pred CCccCCcccCCcceeeecCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPR 22 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~ 22 (176)
|++|||..|+||.|+|+++.+.
T Consensus 129 i~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 129 MDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHcCCCeECCEEeEEEECCCC
Confidence 4679999999999999999754
No 260
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.49 E-value=0.92 Score=29.25 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.3
Q ss_pred CCcccCCcceeeecCCCCCCC
Q 030481 5 NGVYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 5 ng~~l~gr~i~v~~a~~~~~~ 25 (176)
++.+|.||+|+|+++.++...
T Consensus 75 ~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 75 VTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp SCCEETTEECCBCCCSSSSCC
T ss_pred CCceECCEEEEEEEcCCCCCC
Confidence 357899999999999877544
No 261
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=69.79 E-value=2.8 Score=33.90 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCccCCcccCCcceeeecCCCCCCCC
Q 030481 1 MTEMNGVYCSSRPMRIGAATPRKSSG 26 (176)
Q Consensus 1 i~~mng~~l~gr~i~v~~a~~~~~~~ 26 (176)
|+.|||.+|+|+.|.|.++..+....
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~~~~~ 186 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGRTVKG 186 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCCCCCC
Confidence 46799999999999999998765543
No 262
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.07 E-value=1.3 Score=28.22 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=17.4
Q ss_pred ccCC--cccCCcceeeecCCCCCCC
Q 030481 3 EMNG--VYCSSRPMRIGAATPRKSS 25 (176)
Q Consensus 3 ~mng--~~l~gr~i~v~~a~~~~~~ 25 (176)
.||+ .+|.||+|+|+++..+...
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HhccCCceECCEEEEEEEccCcccc
Confidence 4544 5699999999999876543
No 263
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=67.26 E-value=1.7 Score=28.16 Aligned_cols=20 Identities=5% Similarity=-0.028 Sum_probs=17.6
Q ss_pred cCCcccCCcceeeecCCCCC
Q 030481 4 MNGVYCSSRPMRIGAATPRK 23 (176)
Q Consensus 4 mng~~l~gr~i~v~~a~~~~ 23 (176)
|||..|+||.|+|.++..+.
T Consensus 80 ~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 80 KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp GTTEEETTEEEEEEEECHHH
T ss_pred cCCCeECCeEEEEEECCHHH
Confidence 89999999999999986553
No 264
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=63.03 E-value=1.8 Score=27.88 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=16.0
Q ss_pred CCccCCcccCCcc-----eeeecCCCCC
Q 030481 1 MTEMNGVYCSSRP-----MRIGAATPRK 23 (176)
Q Consensus 1 i~~mng~~l~gr~-----i~v~~a~~~~ 23 (176)
|++|||.+|+|++ |+|..+.++.
T Consensus 68 i~~l~g~~~~gr~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 68 VRKLDNTKFRSHEGETAYIRVKVDGPRS 95 (115)
T ss_dssp HHHHTTCBCCCTTSCCCBCEEEECC---
T ss_pred HHHhCCCEECCcEeeeEEEEeccCCCCC
Confidence 4579999999999 6666665543
No 265
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.21 E-value=3.3 Score=26.82 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=17.4
Q ss_pred ccCCcccCCcceeeecCCCC
Q 030481 3 EMNGVYCSSRPMRIGAATPR 22 (176)
Q Consensus 3 ~mng~~l~gr~i~v~~a~~~ 22 (176)
+|||..|+||.|+|.++..+
T Consensus 85 ~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 85 CRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp TSCSBCSTTSCBEEEEECHH
T ss_pred HhCCCeECCcEEEEEECCHH
Confidence 47999999999999998654
No 266
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.95 E-value=29 Score=21.64 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHhhC
Q 030481 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (176)
Q Consensus 53 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~l~ 112 (176)
..+|-+-|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.+....|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHH
Confidence 457888889999998888776666666654555554 5789999999999999998773
No 267
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.90 E-value=4.4 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=18.0
Q ss_pred HHHHHhhcccCCeEEEEEeCCCcEEEEEec
Q 030481 70 EDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99 (176)
Q Consensus 70 ~~l~~~F~~~G~i~~i~~~~~rg~afV~f~ 99 (176)
+++.++|...|.|.... ..|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 45667777777777653 45899999875
No 268
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=44.80 E-value=40 Score=18.89 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHh
Q 030481 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 110 (176)
Q Consensus 55 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~~~~a~~ai~~ 110 (176)
..++.|.++.=.-=...++..+.. ..|..+.+....+-+.|.|.+.+....+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 346778888766556778888888 8888888877777888888866666677765
No 269
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.59 E-value=76 Score=22.15 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=33.9
Q ss_pred eEEEcCCCC-C--------CCHHHHHHhh--cccCCeEEEEEeCC---CcEEEEEecC-HHHHHHHH
Q 030481 57 TIFVGGLDP-N--------VTDEDLRQPF--SQYGEIASVKIPVG---KGCGFVQFAN-RENAEEAL 108 (176)
Q Consensus 57 ~l~v~~L~~-~--------~~~~~l~~~F--~~~G~i~~i~~~~~---rg~afV~f~~-~~~a~~ai 108 (176)
.+.|-|++. . .+..+|++.| ..|.++.-..+... +|++.|.|.+ -..-..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 455667776 2 3457899977 89987665555443 5789999985 33334444
No 270
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.56 E-value=52 Score=20.94 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=27.4
Q ss_pred CeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 81 ~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
.|..+....+ +||-||+=.+..+...|++.+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4777755544 8999999999999999988765543
No 271
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.88 E-value=67 Score=17.37 Aligned_cols=54 Identities=9% Similarity=0.230 Sum_probs=38.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEecC---HHHHHHHHHh
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALHK 110 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~~---~~~a~~ai~~ 110 (176)
++.|.++.-..-...++..+.....|..+.+....+-+.|.|.+ .+....+++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 56667766554456788888888788888888878888888853 3445555553
No 272
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.09 E-value=55 Score=19.04 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=13.0
Q ss_pred CCeEEEEEeCCCcEEEEEecC
Q 030481 80 GEIASVKIPVGKGCGFVQFAN 100 (176)
Q Consensus 80 G~i~~i~~~~~rg~afV~f~~ 100 (176)
|.|.+| ...+..|+|.|+|
T Consensus 28 GtV~kV--~~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKV--DSAREVCLVQFED 46 (68)
T ss_dssp EEEEEE--ETTTTEEEEEETT
T ss_pred eEEEEE--ecCCcEEEEEEcc
Confidence 444444 3457899999986
No 273
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.28 E-value=1.1e+02 Score=18.63 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=27.6
Q ss_pred CeEEEEEeCC-CcEEEEEecCHHHHHHHHHhhCCee
Q 030481 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 115 (176)
Q Consensus 81 ~i~~i~~~~~-rg~afV~f~~~~~a~~ai~~l~g~~ 115 (176)
.|.++.+... .||.||+++..++...+++.+.|..
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCce
Confidence 3666666543 7999999999999999998877764
No 274
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.83 E-value=88 Score=18.14 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.4
Q ss_pred eCCCcEEEEEecC
Q 030481 88 PVGKGCGFVQFAN 100 (176)
Q Consensus 88 ~~~rg~afV~f~~ 100 (176)
...++.|+|.|.|
T Consensus 38 ~~~~gtC~V~F~D 50 (66)
T 2eqj_A 38 NILKQSCFIIFED 50 (66)
T ss_dssp ETTTTEEEEEETT
T ss_pred ccCCcEEEEEEcc
Confidence 3457999999986
No 275
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.39 E-value=89 Score=18.70 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=13.5
Q ss_pred CCeEEEEEeCCCcEEEEEecCH
Q 030481 80 GEIASVKIPVGKGCGFVQFANR 101 (176)
Q Consensus 80 G~i~~i~~~~~rg~afV~f~~~ 101 (176)
|.|.+| ...+..|+|.|+|.
T Consensus 45 GTI~kV--~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKV--DSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEE--ETTTTEEEEEETTS
T ss_pred EEEEEe--ccCCCEEEEEEcCC
Confidence 445544 34578899999873
No 276
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.11 E-value=1.1e+02 Score=16.66 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=38.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeEEEEEeCCCcEEEEEec----CHHHHHHHHHh
Q 030481 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHK 110 (176)
Q Consensus 57 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~~~rg~afV~f~----~~~~a~~ai~~ 110 (176)
++.|.++.=.--...++..+.....|..+.+....+-+.|.|. +.+....+++.
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4666666554444677888888877888888777788899985 45566666665
No 277
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.52 E-value=82 Score=23.44 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=25.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeEEEEEe
Q 030481 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 88 (176)
Q Consensus 56 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~i~~~ 88 (176)
.-+.|+|||..++...|..++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45789999999999999999877 556555443
No 278
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.26 E-value=78 Score=26.87 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHhh----cccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHhh
Q 030481 63 LDPNVTDEDLRQPF----SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKL 111 (176)
Q Consensus 63 L~~~~~~~~l~~~F----~~~G~i~~i~~~~~-----rg~afV~f~~~~~a~~ai~~l 111 (176)
.+.+.+-.||..+| ..+|-|+++.+... +..+++.|.|.+++..++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34444445777877 25788888876542 467889999999999988765
Done!