BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030483
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
           Lanata
 pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
           Lanata In Complex With Nadp
          Length = 364

 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 88/194 (45%), Gaps = 42/194 (21%)

Query: 10  SVALIIGVTGISGLSLAEALKNPTTPGSPWKVYGAARRPPPGWF---PTALVQ------- 59
           SVALI+GVTGI G SLAE L    TPG PWKVYG ARR  P W    P   VQ       
Sbjct: 2   SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD 61

Query: 60  -----------------------ESEEVNIFKNSTMLKXXXXXXXXXXXXXXXXXHVALL 96
                                   +E+ N   NS M +                 H++L 
Sbjct: 62  DSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLK---HISLQ 118

Query: 97  TGTKHYMGPIFDPSLAGQLMPYEVPFKEDSSRLPFPNFYYELEDV---SASYSPAITYSV 153
           TG KHYMGP       G++  ++ P+ ED  RL + NFYY+LED+          +T+SV
Sbjct: 119 TGRKHYMGPF---ESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSV 175

Query: 154 HRSSVIIGASPRSL 167
           HR   I G SP S+
Sbjct: 176 HRPGNIFGFSPYSM 189


>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
          Ternary Complex With Nadph And Gdp-rhamnose.
 pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
          Complex With Nadph And Gdp
 pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
          Complex With Nadph And Gdp
          Length = 381

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 8  PKSVALIIGVTGISGLSLAEALKNPTTPGSPWKVYGAARR 47
          P+ +ALI G+TG  G  L E L      G  ++V+G  RR
Sbjct: 27 PRKIALITGITGQDGSYLTEFL-----LGKGYEVHGLIRR 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,732,519
Number of Sequences: 62578
Number of extensions: 166482
Number of successful extensions: 246
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 16
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)