Query 030484
Match_columns 176
No_of_seqs 117 out of 458
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 23:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 100.0 4.6E-36 1.6E-40 225.5 9.6 97 43-175 2-102 (102)
2 3mce_A Nascent polypeptide-ass 99.9 9.1E-23 3.1E-27 140.5 4.1 57 42-98 5-61 (61)
3 3mcb_A Nascent polypeptide-ass 99.9 4.9E-22 1.7E-26 133.9 5.4 54 44-97 1-54 (54)
4 3mcb_B Transcription factor BT 99.3 6.7E-12 2.3E-16 85.5 6.6 48 51-98 2-49 (58)
5 3lkx_A Transcription factor BT 99.2 1.4E-11 4.7E-16 85.9 6.8 48 51-98 2-49 (66)
6 1wj7_A Hypothetical protein (R 98.6 2.7E-08 9.3E-13 74.7 4.0 37 139-175 40-76 (104)
7 2cp9_A EF-TS, EF-TSMT, elongat 98.3 7.4E-07 2.5E-11 61.6 4.8 40 135-174 6-45 (64)
8 1z96_A DNA-damage, UBA-domain 97.2 0.00043 1.5E-08 42.0 3.9 35 139-174 5-39 (40)
9 2g3q_A Protein YBL047C; endocy 95.3 0.011 3.7E-07 36.6 2.6 34 138-172 4-37 (43)
10 1wji_A Tudor domain containing 94.9 0.028 9.7E-07 37.9 4.1 37 136-173 7-43 (63)
11 2dak_A Ubiquitin carboxyl-term 94.3 0.05 1.7E-06 36.4 4.1 36 136-172 7-42 (63)
12 1vg5_A RSGI RUH-014, rhomboid 94.0 0.063 2.2E-06 37.4 4.3 37 137-174 28-64 (73)
13 1wgn_A UBAP1, ubiquitin associ 94.0 0.041 1.4E-06 37.7 3.1 32 139-171 20-51 (63)
14 2cpw_A CBL-interacting protein 93.4 0.11 3.7E-06 35.0 4.5 34 137-171 18-52 (64)
15 1veg_A NEDD8 ultimate buster-1 93.3 0.098 3.4E-06 37.4 4.3 36 136-172 27-62 (83)
16 1wiv_A UBP14, ubiquitin-specif 93.2 0.11 3.7E-06 36.0 4.3 37 136-173 27-63 (73)
17 2dai_A Ubadc1, ubiquitin assoc 92.9 0.14 4.7E-06 36.4 4.6 35 136-171 27-61 (83)
18 1whc_A RSGI RUH-027, UBA/UBX 3 92.9 0.14 4.7E-06 34.5 4.3 35 136-171 7-42 (64)
19 2ekk_A UBA domain from E3 ubiq 92.8 0.12 4.2E-06 32.4 3.8 34 136-171 7-40 (47)
20 1ify_A HHR23A, UV excision rep 92.7 0.093 3.2E-06 33.5 3.1 34 139-173 9-42 (49)
21 2d9s_A CBL E3 ubiquitin protei 92.7 0.17 5.7E-06 33.5 4.4 31 139-170 10-40 (53)
22 2dag_A Ubiquitin carboxyl-term 91.5 0.21 7.3E-06 34.5 4.0 35 136-171 7-42 (74)
23 2crn_A Ubash3A protein; compac 91.4 0.32 1.1E-05 32.8 4.8 35 136-171 7-42 (64)
24 2jy5_A Ubiquilin-1; UBA, alter 91.3 0.23 7.9E-06 32.0 3.8 35 139-174 13-48 (52)
25 2knz_A Ubiquilin-4; cytoplasm, 91.1 0.22 7.5E-06 32.2 3.6 33 141-174 14-47 (53)
26 1v92_A NSFL1 cofactor P47; 3-h 91.1 0.23 8E-06 30.5 3.5 33 140-172 7-39 (46)
27 2ooa_A E3 ubiquitin-protein li 90.8 0.2 6.8E-06 33.0 3.2 30 140-170 13-42 (52)
28 2bwb_A Ubiquitin-like protein 89.6 0.41 1.4E-05 30.2 3.8 34 140-174 9-43 (46)
29 2dah_A Ubiquilin-3; UBA domain 89.1 0.31 1E-05 31.8 3.0 35 139-174 10-45 (54)
30 2lbc_A Ubiquitin carboxyl-term 88.7 0.47 1.6E-05 35.3 4.2 37 137-174 77-113 (126)
31 1wr1_B Ubiquitin-like protein 88.1 0.55 1.9E-05 31.1 3.8 34 140-174 19-53 (58)
32 2dkl_A Trinucleotide repeat co 87.7 0.47 1.6E-05 33.8 3.4 35 137-172 20-54 (85)
33 2dal_A Protein KIAA0794; FAS a 87.7 0.57 2E-05 31.1 3.7 35 139-173 16-50 (62)
34 2oo9_A E3 ubiquitin-protein li 87.1 0.61 2.1E-05 30.0 3.4 30 140-170 6-35 (46)
35 2juj_A E3 ubiquitin-protein li 86.4 0.52 1.8E-05 31.4 2.8 32 138-170 7-38 (56)
36 1vek_A UBP14, ubiquitin-specif 85.8 1 3.5E-05 31.8 4.4 36 135-171 26-62 (84)
37 4ae4_A Ubiquitin-associated pr 85.4 0.64 2.2E-05 34.8 3.3 26 149-174 86-111 (118)
38 1vej_A Riken cDNA 4931431F19; 85.2 0.97 3.3E-05 31.4 4.0 35 139-174 30-65 (74)
39 1otr_A Protein CUE2; protein-p 84.7 1 3.5E-05 29.0 3.6 36 139-174 5-41 (49)
40 2dzl_A Protein FAM100B; UBA-li 84.1 1.2 4.1E-05 30.1 3.9 34 140-173 19-52 (66)
41 2dna_A Unnamed protein product 82.0 1.2 4E-05 30.6 3.2 33 141-174 22-55 (67)
42 3e21_A HFAF1, FAS-associated f 81.6 1.4 4.8E-05 27.9 3.3 34 140-173 7-41 (45)
43 2cp8_A NEXT to BRCA1 gene 1 pr 80.4 1.1 3.7E-05 29.6 2.5 25 150-174 20-45 (54)
44 2cwb_A Chimera of immunoglobul 77.1 2.2 7.4E-05 31.7 3.6 34 140-174 68-102 (108)
45 2dam_A ETEA protein; KIAA0887, 77.0 3.2 0.00011 27.9 4.2 34 140-173 20-54 (67)
46 1wgl_A TOLL-interacting protei 76.8 2.5 8.6E-05 28.0 3.5 39 136-174 7-46 (59)
47 1dv0_A DNA repair protein HHR2 76.0 1.8 6.1E-05 27.2 2.5 30 141-171 7-36 (47)
48 1nri_A Hypothetical protein HI 70.9 1.2 4.1E-05 37.4 0.9 35 140-174 246-280 (306)
49 3k9o_A Ubiquitin-conjugating e 70.9 3.7 0.00013 32.6 3.8 33 141-174 166-198 (201)
50 3k6g_A Telomeric repeat-bindin 69.5 6.8 0.00023 29.2 4.6 35 139-173 14-48 (111)
51 4dbg_B Ring finger protein 31; 66.2 3.4 0.00012 32.9 2.6 36 140-175 104-139 (162)
52 4dbg_B Ring finger protein 31; 66.0 5 0.00017 31.9 3.5 24 150-173 74-97 (162)
53 2cos_A Serine/threonine protei 62.6 3.7 0.00013 27.1 1.8 18 148-165 18-35 (54)
54 1eej_A Thiol:disulfide interch 56.5 26 0.00091 27.1 6.2 43 38-91 2-51 (216)
55 3ihp_A Ubiquitin carboxyl-term 53.0 10 0.00035 36.5 3.9 36 136-172 718-753 (854)
56 3e46_A Ubiquitin-conjugating e 52.0 15 0.00053 30.5 4.4 27 148-174 224-250 (253)
57 1vdl_A Ubiquitin carboxyl-term 44.4 11 0.00038 26.5 2.0 19 157-175 44-62 (80)
58 2dhy_A CUE domain-containing p 43.1 22 0.00075 24.0 3.2 24 150-173 31-54 (67)
59 1wj7_A Hypothetical protein (R 42.2 22 0.00075 26.2 3.4 32 135-166 50-81 (104)
60 1oai_A Nuclear RNA export fact 42.0 42 0.0014 21.8 4.4 33 141-173 10-42 (59)
61 2xvc_A ESCRT-III, SSO0910; cel 41.8 25 0.00086 23.5 3.3 22 141-162 27-48 (59)
62 4ae4_A Ubiquitin-associated pr 38.2 36 0.0012 25.1 4.1 31 137-167 4-36 (118)
63 3bny_A Aristolochene synthase; 36.2 21 0.00073 29.1 2.8 24 140-163 243-266 (320)
64 1nri_A Hypothetical protein HI 34.7 8.2 0.00028 32.2 0.0 29 143-171 276-304 (306)
65 1di1_A Aristolochene synthase; 33.2 26 0.00088 28.2 2.8 24 140-163 229-252 (300)
66 2fpn_A YWMB; structural genomo 33.0 27 0.00093 28.4 2.9 53 38-91 144-210 (216)
67 1veg_A NEDD8 ultimate buster-1 29.9 41 0.0014 23.6 3.0 37 134-170 38-74 (83)
68 2jp7_A MRNA export factor MEX6 29.1 72 0.0025 20.7 3.9 33 142-174 10-42 (57)
69 1oqy_A HHR23A, UV excision rep 28.9 27 0.00092 30.5 2.3 34 140-174 170-203 (368)
70 1ps1_A Pentalenene synthase; a 28.5 40 0.0014 27.6 3.3 25 139-163 234-258 (337)
71 4ham_A LMO2241 protein; struct 27.2 50 0.0017 23.8 3.3 20 143-162 42-61 (134)
72 2k9l_A RNA polymerase sigma fa 25.7 73 0.0025 21.2 3.6 31 132-162 41-71 (76)
73 3tqn_A Transcriptional regulat 25.6 58 0.002 22.8 3.3 22 141-162 35-56 (113)
74 3u61_A DNA polymerase accessor 23.9 37 0.0013 27.7 2.1 25 138-162 116-143 (199)
75 1z67_A Hypothetical protein S4 23.7 44 0.0015 25.5 2.4 27 137-163 73-99 (135)
76 1b8z_A Protein (histonelike pr 23.1 59 0.002 22.0 2.8 22 142-163 7-28 (90)
77 3hkz_Y DNA-directed RNA polyme 23.0 39 0.0013 24.5 1.9 31 135-165 34-73 (104)
78 2cqh_A IGF-II mRNA-binding pro 23.0 87 0.003 20.3 3.6 30 136-165 19-66 (93)
79 1t3b_A Thiol:disulfide interch 22.6 37 0.0013 26.2 1.9 41 40-91 4-51 (211)
80 2lva_A Ubiquitin carboxyl-term 28.2 18 0.00062 27.6 0.0 20 156-175 37-56 (129)
81 3rhi_A DNA-binding protein HU; 22.4 61 0.0021 22.2 2.8 24 140-163 8-31 (93)
82 3neu_A LIN1836 protein; struct 22.4 71 0.0024 22.8 3.3 22 141-162 39-60 (125)
83 1mul_A NS2, HU-2, DNA binding 22.0 64 0.0022 21.8 2.8 28 142-169 7-34 (90)
84 2b0l_A GTP-sensing transcripti 21.4 79 0.0027 22.1 3.3 22 141-162 45-66 (102)
85 2k9i_A Plasmid PRN1, complete 21.2 86 0.0029 18.7 3.0 23 140-162 22-45 (55)
86 3v1v_A 2-MIB synthase, 2-methy 21.0 54 0.0019 29.0 2.8 33 140-172 355-387 (433)
87 1cw0_A Protein (DNA mismatch e 20.7 93 0.0032 24.0 3.8 35 30-64 16-56 (155)
88 2qsf_X RAD23, UV excision repa 20.7 87 0.003 24.7 3.6 31 140-171 132-162 (171)
89 1tte_A Ubiquitin-conjugating e 20.5 1E+02 0.0035 24.7 4.1 32 135-167 166-197 (215)
90 2o97_B NS1, HU-1, DNA-binding 20.5 61 0.0021 22.0 2.4 28 142-169 7-34 (90)
91 1p71_A DNA-binding protein HU; 20.4 71 0.0024 21.8 2.8 22 142-163 7-28 (94)
92 3kb9_A EPI-isozizaene synthase 20.4 57 0.0019 27.8 2.7 26 138-163 275-300 (382)
93 2cpg_A REPA protein, transcrip 20.3 1.1E+02 0.0037 17.6 3.3 23 140-162 15-38 (45)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=100.00 E-value=4.6e-36 Score=225.49 Aligned_cols=97 Identities=37% Similarity=0.561 Sum_probs=81.6
Q ss_pred HHHHHcCC--cccCCceEEEEEecCeEEEEecCCeEEe--cCCCCeEEEeccceecchhhHHHHHHHHhccCCCCCcccC
Q 030484 43 KAMLKLGM--KPIPGVSRVTVKKSKNILFVISKPDVFK--SPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVS 118 (176)
Q Consensus 43 k~LkKLGl--k~I~gV~rV~I~k~~~~~fvI~~PeV~k--~~gs~tyvVfGe~k~~d~~~~~~~~a~e~~~~~~~~~~~~ 118 (176)
++|+|||| ++|+||+||+|++++ .+|+|++|+||+ ++|++||+|||+++.+++.
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~--------------------- 59 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE--------------------- 59 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence 67999999 799999999999998 899999999995 8999999999999987640
Q ss_pred CCCccccccCccccccCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 030484 119 KPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175 (176)
Q Consensus 119 ~~~~~~~~~~~eevd~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~ 175 (176)
.+.+++++||+|||+|+||||++|++||++|+||||+|||.||
T Consensus 60 --------------~e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 60 --------------AEMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp --------------EECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred --------------ccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 1168999999999999999999999999999999999999996
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.86 E-value=9.1e-23 Score=140.52 Aligned_cols=57 Identities=65% Similarity=1.092 Sum_probs=50.7
Q ss_pred HHHHHHcCCcccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhh
Q 030484 42 RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 98 (176)
Q Consensus 42 rk~LkKLGlk~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~ 98 (176)
|++|+||||++|+||+||+|+++++.+|+|++|+||++++++||+|||+++.+|+++
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence 467999999999999999999999999999999999999999999999999999864
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.85 E-value=4.9e-22 Score=133.94 Aligned_cols=54 Identities=72% Similarity=1.188 Sum_probs=51.6
Q ss_pred HHHHcCCcccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchh
Q 030484 44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 97 (176)
Q Consensus 44 ~LkKLGlk~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~ 97 (176)
+|+||||++|+||+||+|+++++.+|+|++|+||++++++||+|||+++.+|++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence 478999999999999999999999999999999999999999999999999863
No 4
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.28 E-value=6.7e-12 Score=85.47 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=45.1
Q ss_pred cccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhh
Q 030484 51 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 98 (176)
Q Consensus 51 k~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~ 98 (176)
..|+||+||+|++.++++|+|++|.|+.++.+|||+|+|.++++++++
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e 49 (58)
T 3mcb_B 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (58)
T ss_dssp CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence 478999999999999999999999999999999999999999998754
No 5
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=85.87 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=44.1
Q ss_pred cccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhh
Q 030484 51 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 98 (176)
Q Consensus 51 k~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~ 98 (176)
..|+||+||+|++.++++|+|++|.|+.++.+|||+|+|.++++++++
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e 49 (66)
T 3lkx_A 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (66)
T ss_dssp EECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence 578999999999999999999999999999999999999999998754
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.60 E-value=2.7e-08 Score=74.72 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=35.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~ 175 (176)
++||++||++||||+++|+.||.+++|||..||..|-
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6799999999999999999999999999999999873
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=98.30 E-value=7.4e-07 Score=61.55 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 135 ~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
..|+.++|+.+.++||++..++++||.+++|||..||..|
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3588999999999999999999999999999999999877
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.17 E-value=0.00043 Score=41.96 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=30.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
++.|..+++. |.|++.|++||+.++||+-.|+--|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578889987 9999999999999999998887544
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.29 E-value=0.011 Score=36.60 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=27.9
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484 138 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 172 (176)
Q Consensus 138 ~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~ 172 (176)
+++.|+.+++ -|.+|+.|++||+.++||+=.|+-
T Consensus 4 ~e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~ 37 (43)
T 2g3q_A 4 KSLAVEELSG-MGFTEEEAHNALEKCNWDLEAATN 37 (43)
T ss_dssp HHHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHH
Confidence 3556777765 699999999999999999977654
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.93 E-value=0.028 Score=37.95 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~ 173 (176)
+++++.|+.+++ .|.+|+.|++||+.++||+=.|+--
T Consensus 7 ~~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~ 43 (63)
T 1wji_A 7 GVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNV 43 (63)
T ss_dssp SSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 357778887775 7999999999999999999766543
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.34 E-value=0.05 Score=36.39 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.9
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 172 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~ 172 (176)
.++++.|..+++ .|.+|+.|++||+.++||+=.|+-
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 42 (63)
T 2dak_A 7 GPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 42 (63)
T ss_dssp CCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 356778887776 799999999999999999766653
No 12
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.04 E-value=0.063 Score=37.44 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
..++.|..+++ .|.+|+.|++||+.++||+=.|+=-|
T Consensus 28 ~~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~L 64 (73)
T 1vg5_A 28 ASEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEIL 64 (73)
T ss_dssp CCHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ccHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 35678888876 69999999999999999997776443
No 13
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.98 E-value=0.041 Score=37.67 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=27.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 171 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai 171 (176)
++.|+.|+ -.|.|++.|++||+.++|||-.|+
T Consensus 20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 45677777 468999999999999999997774
No 14
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.43 E-value=0.11 Score=35.03 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=28.5
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484 137 VEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI 171 (176)
Q Consensus 137 ~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai 171 (176)
++++.|..+++ .|.+++.|++||+.++| |+=.|+
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 52 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC 52 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence 45677887776 79999999999999998 986664
No 15
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.31 E-value=0.098 Score=37.40 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=30.3
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 172 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~ 172 (176)
.++++.|..+++ .|.+|+.|++||+.++||+=.|+=
T Consensus 27 ~~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e 62 (83)
T 1veg_A 27 SPSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAAQ 62 (83)
T ss_dssp CCCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 457788988875 699999999999999999866653
No 16
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.23 E-value=0.11 Score=35.99 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~ 173 (176)
.++++.|..++ .-|.+|+.|++||+.++||+=.|+=-
T Consensus 27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave~ 63 (73)
T 1wiv_A 27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATDW 63 (73)
T ss_dssp SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 46778888777 47999999999999999999777543
No 17
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.91 E-value=0.14 Score=36.40 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 171 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai 171 (176)
.++++.|..+++ .|.+++.|++||+.++||+=.|+
T Consensus 27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ 61 (83)
T 2dai_A 27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM 61 (83)
T ss_dssp SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence 467888888886 89999999999999999986664
No 18
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.87 E-value=0.14 Score=34.49 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHc-CCcHHHHH
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAA-DGDIVSAI 171 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~-~GDiv~Ai 171 (176)
.++++.|.-+++ .|.+|+.|++||+.+ +||+=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 42 (64)
T 1whc_A 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM 42 (64)
T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence 567788888875 899999999999999 69986664
No 19
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.78 E-value=0.12 Score=32.36 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 171 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai 171 (176)
.++++.|..+++ .|.+++.|++||+.+ ||+=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~ 40 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQAT 40 (47)
T ss_dssp SSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHH
Confidence 567888888887 799999999999999 5875554
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.69 E-value=0.093 Score=33.48 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=26.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~ 173 (176)
++.|..++ ..|.+|+.|++||+.++||+=.|+=-
T Consensus 9 ~~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e~ 42 (49)
T 1ify_A 9 ETMLTEIM-SMGYERERVVAALRASYNNPHRAVEY 42 (49)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 44565555 45999999999999999999777543
No 21
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.68 E-value=0.17 Score=33.52 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=25.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSA 170 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~~GDiv~A 170 (176)
+.-|+..|+ .|.||+.|++||.-++|||--|
T Consensus 10 e~~I~~L~~-lGF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 10 SSEIERLMS-QGYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhcCCHHHH
Confidence 345888876 4999999999999999999444
No 22
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.47 E-value=0.21 Score=34.54 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI 171 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai 171 (176)
.++++-|..+++ .|.+|+.|++||+.++| |+=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ 42 (74)
T 2dag_A 7 GLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM 42 (74)
T ss_dssp SSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 356777777776 79999999999999997 776554
No 23
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.43 E-value=0.32 Score=32.77 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=29.1
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI 171 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai 171 (176)
..+++.|.-+++ -|.+|+.|++||..++| |+=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~ 42 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL 42 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 457778888877 89999999999999987 876654
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=91.28 E-value=0.23 Score=32.02 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=28.7
Q ss_pred cccHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484 139 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 139 eeDIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L 174 (176)
++.|..+++ -|. +|+.+++||+.++||+=.||--|
T Consensus 13 ~~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 13 QQQLEQLSA-MGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 456776664 588 99999999999999998887554
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=91.08 E-value=0.22 Score=32.20 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=26.4
Q ss_pred cHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484 141 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 141 DIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L 174 (176)
.|..+++ .|. +|+.|++||+.++||+=.||--|
T Consensus 14 ~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 14 QLEQLNS-MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4655553 588 99999999999999998886544
No 26
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=91.06 E-value=0.23 Score=30.50 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=29.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 172 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~ 172 (176)
+-|.--++-|||+.+.|+..|..+++|+-.||-
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~ 39 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALA 39 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 357777888999999999999999999988874
No 27
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=90.84 E-value=0.2 Score=33.03 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSA 170 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~A 170 (176)
+-|+-.|+ .|.||+.|++||.-++|||--|
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A 42 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA 42 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence 67877775 5999999999999999998443
No 28
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=89.63 E-value=0.41 Score=30.20 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=25.6
Q ss_pred ccHHHHHHHhCCC-HHHHHHHHHHcCCcHHHHHhhh
Q 030484 140 KDIELVMTQAGVS-RAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 140 eDIeLVmeQagvS-r~kAikALke~~GDiv~Ai~~L 174 (176)
+-|.-++ .-|.+ |..+++||+.++||+=.||--|
T Consensus 9 ~~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 9 HQLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 3454444 45875 7788999999999998887654
No 29
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=89.06 E-value=0.31 Score=31.83 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=25.9
Q ss_pred cccHHHHHHHhCCCHHH-HHHHHHHcCCcHHHHHhhh
Q 030484 139 PKDIELVMTQAGVSRAK-AVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 139 eeDIeLVmeQagvSr~k-AikALke~~GDiv~Ai~~L 174 (176)
++.|..++ ..|.+++. +++||+.++|||=.||-.|
T Consensus 10 ~~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 10 QVQLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 34565555 45897655 6999999999998887554
No 30
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=88.69 E-value=0.47 Score=35.29 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
.+++-|.-+++ .|++|+.|++||+.++||+-.|+=-|
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L 113 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI 113 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56777887776 79999999999999999997775433
No 31
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=88.05 E-value=0.55 Score=31.14 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=26.0
Q ss_pred ccHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484 140 KDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 140 eDIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L 174 (176)
+-|.-++ .-|. +|+.+++||+.++||+=.||-.|
T Consensus 19 ~qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 19 HQLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 3565555 3587 48888999999999998887554
No 32
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.69 E-value=0.47 Score=33.78 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484 137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 172 (176)
Q Consensus 137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~ 172 (176)
++++-|..+++ .|.+|+.|++||+.++||+=.|+=
T Consensus 20 ~n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~e 54 (85)
T 2dkl_A 20 IMSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMS 54 (85)
T ss_dssp HHHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 34566776665 799999999999999999977763
No 33
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.66 E-value=0.57 Score=31.12 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=30.7
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~ 173 (176)
++-|.-.+.-|||+++.|+..|..+++|+-.||-.
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ 50 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTM 50 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 35688888999999999999999999999888743
No 34
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=87.12 E-value=0.61 Score=29.98 Aligned_cols=30 Identities=40% Similarity=0.420 Sum_probs=24.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSA 170 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~A 170 (176)
+.|...|++ |.||+.|++||--+++||-.|
T Consensus 6 ~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A 35 (46)
T 2oo9_A 6 SEIENLMSQ-GYSYQDIQKALVIAQNNIEMA 35 (46)
T ss_dssp HHHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence 456666654 999999999999999999655
No 35
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=86.42 E-value=0.52 Score=31.45 Aligned_cols=32 Identities=38% Similarity=0.369 Sum_probs=26.2
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484 138 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSA 170 (176)
Q Consensus 138 ~eeDIeLVmeQagvSr~kAikALke~~GDiv~A 170 (176)
+++-|.-.|++ |.||+.|++||.-++|||--|
T Consensus 7 ~e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~A 38 (56)
T 2juj_A 7 LSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMA 38 (56)
T ss_dssp HHHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHH
T ss_pred ChHHHHHHHHc-CCCHHHHHHHHHHhcccHHHH
Confidence 34577777764 999999999999999998544
No 36
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=85.79 E-value=1 Score=31.80 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=29.4
Q ss_pred CCCCcccHHHHHHHhCCCHHHHHHHHHHcC-CcHHHHH
Q 030484 135 TGVEPKDIELVMTQAGVSRAKAVKALKAAD-GDIVSAI 171 (176)
Q Consensus 135 ~~~~eeDIeLVmeQagvSr~kAikALke~~-GDiv~Ai 171 (176)
..++++-|..+++ .|.+|+.|++||+.++ ||+=.|+
T Consensus 26 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ 62 (84)
T 1vek_A 26 PVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM 62 (84)
T ss_dssp CCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence 3567888888886 7999999999999985 6986664
No 37
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.40 E-value=0.64 Score=34.84 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.6
Q ss_pred hCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 149 AGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 149 agvSr~kAikALke~~GDiv~Ai~~L 174 (176)
.|.+++.|++||+.++||+=.|+=-|
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAlewL 111 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALEDL 111 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 49999999999999999998886433
No 38
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.24 E-value=0.97 Score=31.45 Aligned_cols=35 Identities=37% Similarity=0.527 Sum_probs=27.5
Q ss_pred cccHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484 139 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 139 eeDIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L 174 (176)
++-|.-+++ .|. .|+.+++||+.++||+=.||-.|
T Consensus 30 e~qi~qL~e-MGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 30 QQELEELKA-LGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 456766664 587 68999999999999998887554
No 39
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=84.71 E-value=1 Score=29.00 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=30.6
Q ss_pred cccHHHHHHHh-CCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 139 PKDIELVMTQA-GVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 139 eeDIeLVmeQa-gvSr~kAikALke~~GDiv~Ai~~L 174 (176)
+++++++.+=. .|++..++.+|+.++||+=.||-.|
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57888888885 9999999999999999997776443
No 40
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.11 E-value=1.2 Score=30.11 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=30.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~ 173 (176)
+-|.--++-|||+++.|+..|..+++|+-.||-.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ 52 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALST 52 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3488888999999999999999999999888753
No 41
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.99 E-value=1.2 Score=30.60 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=23.9
Q ss_pred cHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484 141 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 141 DIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L 174 (176)
.|.-+.+ .|. .|+..++||+.++|||-.||-.|
T Consensus 22 ql~qL~~-MGF~d~~an~~AL~at~Gnve~Ave~L 55 (67)
T 2dna_A 22 EMECLQA-MGFVNYNANLQALIATDGDTNAAIYKL 55 (67)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHH-cCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555443 464 56666999999999998887554
No 42
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=81.64 E-value=1.4 Score=27.88 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=28.4
Q ss_pred ccHHHHHHHhCCCH-HHHHHHHHHcCCcHHHHHhh
Q 030484 140 KDIELVMTQAGVSR-AKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 140 eDIeLVmeQagvSr-~kAikALke~~GDiv~Ai~~ 173 (176)
+-|.--.+=||++- ++|+.-|..+|.||-.|+-.
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 44555667789996 99999999999999999754
No 43
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.45 E-value=1.1 Score=29.58 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.5
Q ss_pred CC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484 150 GV-SRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 150 gv-Sr~kAikALke~~GDiv~Ai~~L 174 (176)
|. .++.-++||+.++|||=.||..|
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~L 45 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTEL 45 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 99999999999999999998876
No 44
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=77.10 E-value=2.2 Score=31.72 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=25.1
Q ss_pred ccHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484 140 KDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 140 eDIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L 174 (176)
+-|.-+ .+-|. .++.+++||+.++|||=.||-.|
T Consensus 68 ~qL~qL-~eMGF~d~~~ni~AL~~t~Gdve~AVe~L 102 (108)
T 2cwb_A 68 PQLQQL-RDMGIQDDELSLRALQATGGDIQAALELI 102 (108)
T ss_dssp HHHHHH-HTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHH-HHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 344333 34576 57899999999999998887655
No 45
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.03 E-value=3.2 Score=27.89 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=29.2
Q ss_pred ccHHHHHHHhC-CCHHHHHHHHHHcCCcHHHHHhh
Q 030484 140 KDIELVMTQAG-VSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 140 eDIeLVmeQag-vSr~kAikALke~~GDiv~Ai~~ 173 (176)
+-|.--+.-|| ++.+.|+..|..+++||-.||-.
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ 54 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34777788899 99999999999999999888753
No 46
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=76.84 E-value=2.5 Score=27.96 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=31.1
Q ss_pred CCCcccHHHHHHHh-CCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 136 GVEPKDIELVMTQA-GVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 136 ~~~eeDIeLVmeQa-gvSr~kAikALke~~GDiv~Ai~~L 174 (176)
.+.+++|+.+.+-- +++++....+|+.++||+=.||=.|
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35678888887776 8999999999999999996666444
No 47
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=75.99 E-value=1.8 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=23.4
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAI 171 (176)
Q Consensus 141 DIeLVmeQagvSr~kAikALke~~GDiv~Ai 171 (176)
-|+-++ ..|.||..|++||..+++|+=.|.
T Consensus 7 aI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~ 36 (47)
T 1dv0_A 7 AIERLK-ALGFPESLVIQAYFACEKNENLAA 36 (47)
T ss_dssp HHTTTT-TTTCCHHHHHHHHTTTTSCHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 344443 449999999999999999986664
No 48
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=70.91 E-value=1.2 Score=37.44 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=11.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
.-...|++.+|||+++|.++|.+++|++=-||+-+
T Consensus 246 r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 280 (306)
T 1nri_A 246 RAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMI 280 (306)
T ss_dssp HHHHHHHHHSCCCC---------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHH
Confidence 44778999999999999999999999998887643
No 49
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=70.85 E-value=3.7 Score=32.64 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=26.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 141 DIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
-|+..+ .-|.+|++|+.||..+++|+-.|+=.|
T Consensus 166 kV~~l~-~MGf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 166 KIENLC-AMGFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344443 349999999999999999998887554
No 50
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=69.49 E-value=6.8 Score=29.20 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.7
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~ 173 (176)
.+=|.-.|++++.+--..-+||.+|+||+-.|-.-
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~f 48 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAF 48 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHH
Confidence 45688899999999999999999999999887543
No 51
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=66.22 E-value=3.4 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~ 175 (176)
.-++.+++-...+++...+||..|.||+-.||..|.
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 456778888888899999999999999988888773
No 52
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=66.01 E-value=5 Score=31.91 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 150 GVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 150 gvSr~kAikALke~~GDiv~Ai~~ 173 (176)
+.|.++|++||..++||+=.|+-.
T Consensus 74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ 97 (162)
T 4dbg_B 74 AFSCQEARRAWLDRHGNLDEAVEE 97 (162)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccHHHHHHHHHHccCChHHHHHH
Confidence 479999999999999999888754
No 53
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=62.57 E-value=3.7 Score=27.13 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=16.7
Q ss_pred HhCCCHHHHHHHHHHcCC
Q 030484 148 QAGVSRAKAVKALKAADG 165 (176)
Q Consensus 148 QagvSr~kAikALke~~G 165 (176)
..||+++.|.+||+.++|
T Consensus 18 eMGFd~erae~Alk~Tg~ 35 (54)
T 2cos_A 18 NAGCDQEMAGRALKQTGS 35 (54)
T ss_dssp HHHCCHHHHHHHHHHHTS
T ss_pred HcCCCHHHHHHHHHHhCc
Confidence 579999999999999987
No 54
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=56.46 E-value=26 Score=27.06 Aligned_cols=43 Identities=19% Similarity=0.478 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCc-------ccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccc
Q 030484 38 EKKSRKAMLKLGMK-------PIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 91 (176)
Q Consensus 38 eKK~rk~LkKLGlk-------~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~ 91 (176)
+..+++.|.++|++ +++|+.+|++ +++ + +|-.+. ..|+|+|..
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~--~~~-~-------~y~~~d-g~~~i~G~l 51 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG-V-------LYITDD-GKHIIQGPM 51 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE-E-------EEEETT-SCEEEESCE
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE--CCe-E-------EEEcCC-CCEEEEeee
Confidence 45678888888886 5677777766 222 2 354443 348888863
No 55
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=53.01 E-value=10 Score=36.48 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484 136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 172 (176)
Q Consensus 136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~ 172 (176)
.++++.|..+.+ .|.+++.|++||++++||+-.||=
T Consensus 718 ~~~~e~i~~l~~-mGf~~~~a~~aL~~t~~~~eraid 753 (854)
T 3ihp_A 718 PPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 753 (854)
T ss_dssp -CCHHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHH
Confidence 467788887754 799999999999999999988863
No 56
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=51.98 E-value=15 Score=30.48 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.7
Q ss_pred HhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 148 QAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 148 QagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
+-|.+|+.|+.||..+++|+-.|+=.|
T Consensus 224 ~mgf~~~~~~~al~~~nWd~~~A~e~L 250 (253)
T 3e46_A 224 AAGFDRNAVIVALSSKSWDVETATELL 250 (253)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 349999999999999999998887655
No 57
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.41 E-value=11 Score=26.52 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.2
Q ss_pred HHHHHHcCCcHHHHHhhhc
Q 030484 157 VKALKAADGDIVSAIMELT 175 (176)
Q Consensus 157 ikALke~~GDiv~Ai~~L~ 175 (176)
-.||+..+|||..|+--||
T Consensus 44 ~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 44 QQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHh
Confidence 3599999999999987775
No 58
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.11 E-value=22 Score=24.01 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 150 GVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 150 gvSr~kAikALke~~GDiv~Ai~~ 173 (176)
.++++-...+|+.++||+-.||=.
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~ 54 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQ 54 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 667777777777777777555543
No 59
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.15 E-value=22 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCCCcccHHHHHHHhCCCHHHHHHHHHHcCCc
Q 030484 135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGD 166 (176)
Q Consensus 135 ~~~~eeDIeLVmeQagvSr~kAikALke~~GD 166 (176)
+|++++++......++-+-++||..|.+..+|
T Consensus 50 tG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 50 TGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred hCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 59999999999999999999999999987654
No 60
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=41.96 E-value=42 Score=21.83 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.8
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIME 173 (176)
Q Consensus 141 DIeLVmeQagvSr~kAikALke~~GDiv~Ai~~ 173 (176)
=|..+..|||...+=+.+.|.+++-|.=.|+-.
T Consensus 10 mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 10 MLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 367788999999999999999999999888754
No 61
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=41.76 E-value=25 Score=23.48 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=21.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 030484 141 DIELVMTQAGVSRAKAVKALKA 162 (176)
Q Consensus 141 DIeLVmeQagvSr~kAikALke 162 (176)
||..+.+.-|||+++...+|+.
T Consensus 27 dI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHHHHHH
Confidence 8999999999999999999986
No 62
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=38.15 E-value=36 Score=25.09 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCcccHHHHH--HHhCCCHHHHHHHHHHcCCcH
Q 030484 137 VEPKDIELVM--TQAGVSRAKAVKALKAADGDI 167 (176)
Q Consensus 137 ~~eeDIeLVm--eQagvSr~kAikALke~~GDi 167 (176)
+++++=++|. ..-|.+++.+++||+.+++|+
T Consensus 4 l~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~ 36 (118)
T 4ae4_A 4 MSPSERQCVETVVNMGYSYECVLRAMKAAGANI 36 (118)
T ss_dssp SCHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCH
Confidence 3444444443 344999999999999998873
No 63
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=36.15 E-value=21 Score=29.12 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHc
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~ 163 (176)
.=|.++|.|.|||.++|+..+.+-
T Consensus 243 N~V~~~m~~~g~s~eeA~~~~~~~ 266 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAKRVLFVM 266 (320)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHH
Confidence 469999999999999999888654
No 64
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=34.73 E-value=8.2 Score=32.21 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484 143 ELVMTQAGVSRAKAVKALKAADGDIVSAI 171 (176)
Q Consensus 143 eLVmeQagvSr~kAikALke~~GDiv~Ai 171 (176)
-++|-.+|||.++|.+.|..++|-|-.||
T Consensus 276 a~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 304 (306)
T 1nri_A 276 AIMMILSTLSKSEAKVLLERHQGKLRNAL 304 (306)
T ss_dssp -----------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcHHHHh
Confidence 35666789999999999999999988776
No 65
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=33.22 E-value=26 Score=28.20 Aligned_cols=24 Identities=4% Similarity=0.154 Sum_probs=21.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHc
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~ 163 (176)
.=|.++|.|.|||.++|+..+.+-
T Consensus 229 n~V~~~m~~~g~s~eeA~~~~~~~ 252 (300)
T 1di1_A 229 SAVKVLAEESKLGIPATKRVLWSM 252 (300)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHH
Confidence 579999999999999999887664
No 66
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=32.98 E-value=27 Score=28.44 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCcccCCceEEEE---E--ec--CeEEEEecCCeE-------EecCCCCeEEEeccc
Q 030484 38 EKKSRKAMLKLGMKPIPGVSRVTV---K--KS--KNILFVISKPDV-------FKSPTTDTYVIFGEA 91 (176)
Q Consensus 38 eKK~rk~LkKLGlk~I~gV~rV~I---~--k~--~~~~fvI~~PeV-------~k~~gs~tyvVfGe~ 91 (176)
+++++++|+.|+.++|+++.+.++ - .+ ++.+ -+.+-.+ |...+..||+..|.|
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~e~~~vSiSaYs~~~~~~i-~~~~~k~NlqvAlR~~~~~~kT~I~iGTP 210 (216)
T 2fpn_A 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYI-MTSKHKMNLQIALRSAGMGGKHTVTVGTP 210 (216)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSCCE-EETTEEECEEEEEEC------CEEEEESS
T ss_pred HHHHHHHHHHcCCeeeeeeccccEEEEEEEChhhhhHh-hcCCeEEEEEEEEEecCCCCcEEEEEecc
Confidence 788899999999998876654332 2 22 2322 2333233 335677899999977
No 67
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.93 E-value=41 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=33.1
Q ss_pred cCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484 134 ETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSA 170 (176)
Q Consensus 134 ~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~A 170 (176)
+-|++++.+.....+++-.-+.|+..|-.|.|+|-..
T Consensus 38 ~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~ 74 (83)
T 1veg_A 38 YMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPD 74 (83)
T ss_dssp HHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTT
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchh
Confidence 4599999999999999999999999999999986543
No 68
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=29.11 E-value=72 Score=20.66 Aligned_cols=33 Identities=6% Similarity=0.043 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 142 IeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
|.-++.|||...+=+.+.|.+++=|.=.|+-.+
T Consensus 10 v~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 10 LNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 667788999999999999999999988887543
No 69
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=28.87 E-value=27 Score=30.54 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=26.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L 174 (176)
+-|.-++ .-|.+|+.+++||+.++||+=.|+=-|
T Consensus 170 ~~i~~l~-~MGf~~~~~~~AL~a~~nn~~~A~e~L 203 (368)
T 1oqy_A 170 TMLTEIM-SMGYERERVVAALRASYNNPHRAVEYL 203 (368)
T ss_dssp HHHHHHH-TTTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455444 359999999999999999997776544
No 70
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=28.51 E-value=40 Score=27.62 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=21.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHc
Q 030484 139 PKDIELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 139 eeDIeLVmeQagvSr~kAikALke~ 163 (176)
..=|..+|.|.|||.++|+..+.+-
T Consensus 234 ~n~V~~~m~~~g~s~eeA~~~v~~~ 258 (337)
T 1ps1_A 234 NNMVMILRREHGWSKSRSVSHMQNE 258 (337)
T ss_dssp CSHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4568999999999999999887653
No 71
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=27.23 E-value=50 Score=23.79 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.7
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q 030484 143 ELVMTQAGVSRAKAVKALKA 162 (176)
Q Consensus 143 eLVmeQagvSr~kAikALke 162 (176)
.-++++.||||.-.++||..
T Consensus 42 r~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 42 REFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999976
No 72
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=25.70 E-value=73 Score=21.22 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=26.7
Q ss_pred cccCCCCcccHHHHHHHhCCCHHHHHHHHHH
Q 030484 132 VDETGVEPKDIELVMTQAGVSRAKAVKALKA 162 (176)
Q Consensus 132 vd~~~~~eeDIeLVmeQagvSr~kAikALke 162 (176)
.|+.|+=..+++-+....|||.++..++|+-
T Consensus 41 LD~~GYL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 41 LNEKGFLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp CTTSSTTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 5677888889999999999999999998863
No 73
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=25.62 E-value=58 Score=22.84 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.8
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 030484 141 DIELVMTQAGVSRAKAVKALKA 162 (176)
Q Consensus 141 DIeLVmeQagvSr~kAikALke 162 (176)
.+.-++++.||||.-+++||..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3667899999999999999875
No 74
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Probab=23.91 E-value=37 Score=27.70 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.8
Q ss_pred Cccc---HHHHHHHhCCCHHHHHHHHHH
Q 030484 138 EPKD---IELVMTQAGVSRAKAVKALKA 162 (176)
Q Consensus 138 ~eeD---IeLVmeQagvSr~kAikALke 162 (176)
+.+| |+||+.--|||.++|+.+|+-
T Consensus 116 ~~~d~~~l~lv~k~Y~vs~~kA~eYl~i 143 (199)
T 3u61_A 116 DSTEVLIIKLLAKRYQVNTNDAINYKSI 143 (199)
T ss_dssp CCHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3467 999999999999999998864
No 75
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=23.70 E-value=44 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.7
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHc
Q 030484 137 VEPKDIELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 137 ~~eeDIeLVmeQagvSr~kAikALke~ 163 (176)
+.++.|+-+.+|+|+|+++|...|-+.
T Consensus 73 lG~~~l~~lA~q~Gl~~~~~~~~LA~~ 99 (135)
T 1z67_A 73 LGTNAVSDLGQKLGVDTSTASSLLAEQ 99 (135)
T ss_dssp HCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HChHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567889999999999999999988763
No 76
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=23.14 E-value=59 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHc
Q 030484 142 IELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 142 IeLVmeQagvSr~kAikALke~ 163 (176)
|+.|.+++|+|+.+|..+|..-
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~ 28 (90)
T 1b8z_A 7 IDRVAKKAGAKKKDVKLILDTI 28 (90)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHH
Confidence 6788999999999998888765
No 77
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=22.98 E-value=39 Score=24.54 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCCCcccHHHHHHHh---------CCCHHHHHHHHHHcCC
Q 030484 135 TGVEPKDIELVMTQA---------GVSRAKAVKALKAADG 165 (176)
Q Consensus 135 ~~~~eeDIeLVmeQa---------gvSr~kAikALke~~G 165 (176)
..++.-||+|.|.-+ ..|-++|++.+.++..
T Consensus 34 palSiqDIELL~KnTEIWdkLl~gkISIEEAKklFedn~~ 73 (104)
T 3hkz_Y 34 PKLSIQDIELLMRNTEIWDNLLNGKITLEEAKKLFEDNYK 73 (104)
T ss_dssp ----CCCTTHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHhhhHHHHHHHcCcccHHHHHHHHHHHHH
Confidence 357788999999876 4688999999887643
No 78
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.97 E-value=87 Score=20.25 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCCcccHHHHHHHhCC------------------CHHHHHHHHHHcCC
Q 030484 136 GVEPKDIELVMTQAGV------------------SRAKAVKALKAADG 165 (176)
Q Consensus 136 ~~~eeDIeLVmeQagv------------------Sr~kAikALke~~G 165 (176)
.++++||.-+.++.|- +.+.|.+||...+|
T Consensus 19 ~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 19 AVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp TCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccC
Confidence 4678899999998886 78999999988766
No 79
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=22.61 E-value=37 Score=26.19 Aligned_cols=41 Identities=15% Similarity=0.390 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCc-------ccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccc
Q 030484 40 KSRKAMLKLGMK-------PIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 91 (176)
Q Consensus 40 K~rk~LkKLGlk-------~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~ 91 (176)
.+++.|.++|++ +++|+-+|++ + ..-+|-.+. ..|+|+|..
T Consensus 4 ~~~~~l~~~~~~v~~v~~~~~~Gl~~v~~--~--------~~~~y~~~d-g~~~i~G~l 51 (211)
T 1t3b_A 4 AIKRKLQSFNISNIVIKSSPISGIKTAVT--D--------QGILYVSED-GKYLFEGKL 51 (211)
T ss_dssp TTHHHHHTTTCCSCCCCBCSSTTEECCEE--T--------TEECEEESS-SSCEECSCC
T ss_pred HHHHHHHHcCCceeeeecCCCCCeEEEEE--C--------CEEEEEcCC-CCEEEEeeE
Confidence 356778888876 3455555554 2 222354443 357888873
No 80
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.23 E-value=18 Score=27.64 Aligned_cols=20 Identities=50% Similarity=0.611 Sum_probs=16.7
Q ss_pred HHHHHHHcCCcHHHHHhhhc
Q 030484 156 AVKALKAADGDIVSAIMELT 175 (176)
Q Consensus 156 AikALke~~GDiv~Ai~~L~ 175 (176)
-.+||+..+|||..|+--||
T Consensus 37 L~~ALkAsnGdl~qAV~~LT 56 (129)
T 2lva_A 37 LHEALKASNGDITQAVSLLT 56 (129)
Confidence 35699999999999987665
No 81
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=22.42 E-value=61 Score=22.24 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHc
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~ 163 (176)
+=|+.|.+++|+|+.+|..+|..-
T Consensus 8 eLi~~ia~~~~lsk~~~~~~v~~~ 31 (93)
T 3rhi_A 8 ELIKNVAQNAEISQKEATVVVQTV 31 (93)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHH
Confidence 347889999999999998888664
No 82
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.40 E-value=71 Score=22.82 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=19.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 030484 141 DIELVMTQAGVSRAKAVKALKA 162 (176)
Q Consensus 141 DIeLVmeQagvSr~kAikALke 162 (176)
-+.-++++.||||..+++||..
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~ 60 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQE 60 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3667899999999999999876
No 83
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=21.98 E-value=64 Score=21.84 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHH
Q 030484 142 IELVMTQAGVSRAKAVKALKAADGDIVS 169 (176)
Q Consensus 142 IeLVmeQagvSr~kAikALke~~GDiv~ 169 (176)
|+.|.+++|+|+.+|..+|..--.-|.+
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~~~~i~~ 34 (90)
T 1mul_A 7 IDVIAEKAELSKTQAKAALESTLAAITE 34 (90)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6788899999999998888765333333
No 84
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=21.44 E-value=79 Score=22.08 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.7
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 030484 141 DIELVMTQAGVSRAKAVKALKA 162 (176)
Q Consensus 141 DIeLVmeQagvSr~kAikALke 162 (176)
.+.-++++.||||..+++||+.
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~ 66 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRK 66 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3566899999999999999876
No 85
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=21.23 E-value=86 Score=18.69 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=17.0
Q ss_pred ccHHHHHHHhCCCHHHHHH-HHHH
Q 030484 140 KDIELVMTQAGVSRAKAVK-ALKA 162 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAik-ALke 162 (176)
+.++-.+.+.|+|+.+.++ ||.+
T Consensus 22 ~~l~~~a~~~g~s~s~~ir~ai~~ 45 (55)
T 2k9i_A 22 DRLMEIAKEKNLTLSDVCRLAIKE 45 (55)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3566777788999999887 5544
No 86
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=20.97 E-value=54 Score=28.99 Aligned_cols=33 Identities=3% Similarity=0.001 Sum_probs=24.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 172 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~ 172 (176)
.=|.++|.+-|||.++|+..+.+-=.|.+..++
T Consensus 355 N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~ 387 (433)
T 3v1v_A 355 NLPVVIAEREQLCERDAYLKAVEVHNELQHSFE 387 (433)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999888764444444433
No 87
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=20.72 E-value=93 Score=24.00 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCCcCChhHHHHHHHHHHcCCc------ccCCceEEEEEec
Q 030484 30 GRSKQSRSEKKSRKAMLKLGMK------PIPGVSRVTVKKS 64 (176)
Q Consensus 30 ~~~~~sr~eKK~rk~LkKLGlk------~I~gV~rV~I~k~ 64 (176)
.+++.++.|..+++.|..+|+. .+||+--+++.+.
T Consensus 16 iR~~~T~pE~~lr~~L~~~G~rfR~q~~~lpg~pDfv~~~~ 56 (155)
T 1cw0_A 16 IATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEY 56 (155)
T ss_dssp CCSSSCHHHHHHHHHHHHTTCCCEECCTTSTTCCSEEEGGG
T ss_pred hhcCCCcHHHHHHHHHHHCCCeEEEeCCCCCCcccEEcccC
Confidence 3455688899999999999997 2466555554443
No 88
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=20.67 E-value=87 Score=24.71 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484 140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAI 171 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai 171 (176)
+-|+-+++ .|.+|+.||+||..+++|.--|.
T Consensus 132 eaI~rL~~-mGF~r~~viqA~~ac~knee~Aa 162 (171)
T 2qsf_X 132 QAISRLCE-LGFERDLVIQVYFACDKNEEAAA 162 (171)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 34555543 49999999999999999985553
No 89
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=20.47 E-value=1e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.5
Q ss_pred CCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcH
Q 030484 135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDI 167 (176)
Q Consensus 135 ~~~~eeDIeLVmeQagvSr~kAikALke~~GDi 167 (176)
.|++++-|+.+ ...|.++++|+.||...++|-
T Consensus 166 ~g~~~~~v~~~-~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 166 YGIDHDLIDEF-ESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CCCSHHHHHHH-HHHTCCHHHHHHHHHHSCCSS
T ss_pred ccccHHHHHHH-HHcCCCHHHHHHHHHHcCCCc
Confidence 46666677765 456899999999999999884
No 90
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=20.45 E-value=61 Score=21.99 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHH
Q 030484 142 IELVMTQAGVSRAKAVKALKAADGDIVS 169 (176)
Q Consensus 142 IeLVmeQagvSr~kAikALke~~GDiv~ 169 (176)
|+.|.+++|+|+.+|..+|..--.-|.+
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~~~~i~~ 34 (90)
T 2o97_B 7 IDKIAAGADISKAAAGRALDAIIASVTE 34 (90)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6788899999999998888764333333
No 91
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=20.43 E-value=71 Score=21.84 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHc
Q 030484 142 IELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 142 IeLVmeQagvSr~kAikALke~ 163 (176)
|+.|.+++|+|+.+|..+|..-
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~ 28 (94)
T 1p71_A 7 VDAVAEKASVTKKQADAVLTAA 28 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 6788899999999998888764
No 92
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=20.40 E-value=57 Score=27.83 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=22.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHc
Q 030484 138 EPKDIELVMTQAGVSRAKAVKALKAA 163 (176)
Q Consensus 138 ~eeDIeLVmeQagvSr~kAikALke~ 163 (176)
...=|.++|.+-|||.++|++.+.+-
T Consensus 275 ~~N~V~~~m~~~g~s~eeA~~~v~~~ 300 (382)
T 3kb9_A 275 VHNLGISLITHHSLTLEEAIGEVRRR 300 (382)
T ss_dssp CCSHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34678999999999999999987764
No 93
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=20.34 E-value=1.1e+02 Score=17.56 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=17.7
Q ss_pred ccHHHHHHHhCCCHHHHHH-HHHH
Q 030484 140 KDIELVMTQAGVSRAKAVK-ALKA 162 (176)
Q Consensus 140 eDIeLVmeQagvSr~kAik-ALke 162 (176)
+-++-.+.+.|+||.+.++ ||.+
T Consensus 15 ~~Ld~~a~~~g~srS~~ir~ai~~ 38 (45)
T 2cpg_A 15 ENLEKMAREMGLSKSAMISVALEN 38 (45)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567788899999999887 5543
Done!