BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030486
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DO8|A Chain A, The Crystal Structure Of The Protein With Unknown Function
           From Archaeoglobus Fulgidus
 pdb|3DO8|B Chain B, The Crystal Structure Of The Protein With Unknown Function
           From Archaeoglobus Fulgidus
          Length = 148

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 24  VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
           V LGGTF+ LH+GH+  +  + +L    I +GV    M   +  + L  P   R  NV+ 
Sbjct: 3   VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVL--PFAIRAENVKR 60

Query: 84  YI---KSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQL 140
           Y+      +PE+V     IT+PYG ++ D + E +VVS ET    L +N+KR + G  ++
Sbjct: 61  YVMRKYGFEPEIV----KITNPYGKTL-DVDFEYLVVSPETYEMALKINQKREELGKRKI 115

Query: 141 KIEVVDLV 148
            I  VD +
Sbjct: 116 TIVKVDWM 123


>pdb|3OTW|A Chain A, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|B Chain B, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|C Chain C, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|D Chain D, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|E Chain E, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|F Chain F, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
          Length = 163

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDG----PMLTNKQFAELIQPVDERMRNVEA 83
          GTFD + +GH   +  S+EL  ++++V V       PM +  +  ++IQ   +  +NVE 
Sbjct: 15 GTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVEC 73


>pdb|3NV7|A Chain A, Crystal Structure Of H.Pylori Phosphopantetheine
          Adenylyltransferase Mutant I4vN76Y
          Length = 157

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDG----PMLTNKQFAELIQPVDERMRNVEA 83
          GTFD + +GH   +  S+EL  ++++V V       PM +  +  ++IQ   +  +NVE 
Sbjct: 9  GTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVEC 67


>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
           Bacillus Subtilis
 pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
           Bacillus Subtilis
 pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
 pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
 pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
 pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
           Cdp-glycerol
          Length = 129

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 24  VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
           V+  GTFD LH GH   L+ + +L  D +VV +        KQ  +     + R   +E 
Sbjct: 4   VITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQ-KKAYHSYEHRKLILET 61

Query: 84  --YIKSIKPELVVQTEPITDPYGPSIVDENLEAIVV 117
             Y+  + PE   + +         I+D N++  V+
Sbjct: 62  IRYVDEVIPEKNWEQKK------QDIIDHNIDVFVM 91


>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
          Biosynthesis Protein From Thermoplasma Volcanium Gss1
 pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
          Biosynthesis Protein From Thermoplasma Volcanium Gss1
          Length = 143

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN 64
          V+  G FD LH GH  +LK S +L  + +VV   D     N
Sbjct: 5  VMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNN 45


>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
           The Virulence Factor Choline Binding Protein E From
           Streptococcus Pneumoniae
 pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
           The Virulence Factor Choline Binding Protein E From
           Streptococcus Pneumoniae
          Length = 308

 Score = 28.1 bits (61), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 18/73 (24%)

Query: 24  VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
           + LGG  D +H             A D+       GP++      +     D    N + 
Sbjct: 197 IYLGGDLDNVHG------------AEDKY------GPLIGKVDLMKFNHHHDTNKSNTKD 238

Query: 84  YIKSIKPELVVQT 96
           +IK++ P L+VQT
Sbjct: 239 FIKNLSPSLIVQT 251


>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
          Thermotoga Maritima
 pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
          Thermotoga Maritima
          Length = 293

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELAR----DRIVVGVCDGPMLTNKQFAELIQPVDERMR 79
          VV  G FD +H GH+  L+   E+A     D ++  +   P      F  L+  V+ R+ 
Sbjct: 2  VVSIGVFDGVHIGHQKVLRTXKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLXTVESRVE 61

Query: 80 NVEAYIKSI 88
           +  Y +++
Sbjct: 62 XLSRYARTV 70


>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
           Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
           Pneumoniae
          Length = 547

 Score = 27.3 bits (59), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 18/73 (24%)

Query: 24  VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
           + LGG  D +H             A D+       GP++      +     D    N + 
Sbjct: 198 IYLGGDLDNVHG------------AEDKY------GPLIGKVDLMKFNHHHDTNKSNTKD 239

Query: 84  YIKSIKPELVVQT 96
           +IK++ P L+VQT
Sbjct: 240 FIKNLSPSLIVQT 252


>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
          Thermotoga Maritima, Tm379
 pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
          Thermotoga Maritima, Tm379
 pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
 pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
 pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase
          From Thermotoga Maritina
 pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase
          From Thermotoga Maritina
          Length = 293

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELAR----DRIVVGVCDGPMLTNKQFAELIQPVDERMR 79
          VV  G FD +H GH+  L+   E+A     D ++  +   P      F  L+  V+ R+ 
Sbjct: 2  VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVE 61

Query: 80 NVEAYIKSI 88
           +  Y +++
Sbjct: 62 MLSRYARTV 70


>pdb|3ND5|A Chain A, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|B Chain B, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|C Chain C, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|D Chain D, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|E Chain E, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|F Chain F, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND6|A Chain A, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|B Chain B, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|C Chain C, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|D Chain D, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|E Chain E, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|F Chain F, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND7|A Chain A, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|B Chain B, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|C Chain C, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|D Chain D, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|E Chain E, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|F Chain F, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
          Length = 171

 Score = 26.6 bits (57), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGV----CDGPMLTNKQFAELIQPVDERMRN 80
          +  G+FD + +GH   ++ SA+L  D +++GV        + T ++   LI+   + M N
Sbjct: 6  LFPGSFDPMTNGHLNLIERSAKLF-DEVIIGVFINTSKQTLFTPEEKKYLIEEATKEMPN 64

Query: 81 V 81
          V
Sbjct: 65 V 65


>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
          Corynebacterium Ammoniagenes
 pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
          Corynebacterium Ammoniagenes
          Length = 338

 Score = 26.6 bits (57), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARD 50
          DNS  AV +G  FD +H GH+  + A+ E AR+
Sbjct: 15 DNS--AVTIG-VFDGVHRGHQKLINATVEKARE 44


>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
          Ammoniagenes
 pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
          Ammoniagenes
          Length = 338

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARD 50
          DNS  AV +G  FD +H GH+  + A+ E AR+
Sbjct: 15 DNS--AVTIG-VFDGVHRGHQKLINATVEKARE 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.134    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,664,669
Number of Sequences: 62578
Number of extensions: 170253
Number of successful extensions: 271
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 16
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)