Query 030486
Match_columns 176
No_of_seqs 160 out of 1395
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 14:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02388 phosphopantetheine ad 100.0 2.9E-38 6.3E-43 241.2 17.8 173 3-175 1-174 (177)
2 cd02164 PPAT_CoAS phosphopante 100.0 1.4E-33 2.9E-38 209.8 14.9 142 23-164 1-142 (143)
3 PRK00777 phosphopantetheine ad 100.0 1.8E-28 4E-33 184.3 16.3 143 22-168 2-144 (153)
4 COG1019 Predicted nucleotidylt 100.0 1.5E-28 3.3E-33 180.4 11.3 145 20-168 4-148 (158)
5 cd02064 FAD_synthetase_N FAD s 99.9 3.8E-27 8.1E-32 181.6 8.2 140 23-173 1-162 (180)
6 KOG3351 Predicted nucleotidylt 99.9 1E-26 2.2E-31 182.6 10.5 155 11-168 132-286 (293)
7 TIGR00083 ribF riboflavin kina 99.9 4.8E-27 1E-31 192.6 8.2 139 24-174 1-161 (288)
8 COG0196 RibF FAD synthase [Coe 99.9 1E-26 2.3E-31 191.0 9.6 141 21-173 15-177 (304)
9 PRK07143 hypothetical protein; 99.9 9.7E-27 2.1E-31 189.9 8.4 138 21-174 15-167 (279)
10 PRK01170 phosphopantetheine ad 99.9 1.1E-25 2.3E-30 186.2 14.1 140 23-168 2-141 (322)
11 PRK05627 bifunctional riboflav 99.9 2.5E-26 5.3E-31 189.9 9.0 142 23-174 15-178 (305)
12 PF06574 FAD_syn: FAD syntheta 99.9 1.8E-26 3.8E-31 174.2 6.0 131 21-161 5-157 (157)
13 cd02170 cytidylyltransferase c 99.9 1.4E-22 3.1E-27 149.3 6.9 127 22-167 2-134 (136)
14 cd02169 Citrate_lyase_ligase C 99.9 7.7E-22 1.7E-26 162.6 9.5 133 21-173 114-284 (297)
15 TIGR02199 rfaE_dom_II rfaE bif 99.9 1.9E-21 4E-26 145.0 9.9 130 21-167 11-143 (144)
16 cd02171 G3P_Cytidylyltransfera 99.9 1E-21 2.2E-26 143.5 7.9 124 22-167 2-127 (129)
17 TIGR01518 g3p_cytidyltrns glyc 99.8 2.1E-21 4.6E-26 141.3 6.5 119 24-166 1-125 (125)
18 cd02172 RfaE_N N-terminal doma 99.8 9.8E-21 2.1E-25 141.1 8.6 133 21-168 4-141 (144)
19 cd02039 cytidylyltransferase_l 99.8 7E-20 1.5E-24 134.5 11.6 134 23-165 1-143 (143)
20 smart00764 Citrate_ly_lig Citr 99.8 1.5E-20 3.2E-25 145.1 7.1 135 27-173 5-169 (182)
21 COG1057 NadD Nicotinic acid mo 99.7 5.1E-18 1.1E-22 132.2 6.9 146 20-170 2-175 (197)
22 PRK08887 nicotinic acid mononu 99.7 8.4E-18 1.8E-22 129.0 6.8 137 21-170 2-150 (174)
23 PRK00168 coaD phosphopantethei 99.7 1E-16 2.3E-21 121.2 12.5 135 22-170 2-139 (159)
24 PRK00071 nadD nicotinic acid m 99.7 1.2E-17 2.6E-22 130.9 6.9 139 21-170 4-181 (203)
25 PRK13964 coaD phosphopantethei 99.7 6.1E-17 1.3E-21 119.8 9.5 132 22-170 2-140 (140)
26 cd02163 PPAT Phosphopantethein 99.7 2.3E-16 5.1E-21 118.6 11.4 133 23-170 1-137 (153)
27 TIGR01527 arch_NMN_Atrans nico 99.7 3.9E-17 8.5E-22 124.1 6.7 130 24-171 2-138 (165)
28 TIGR00482 nicotinate (nicotina 99.7 2.9E-17 6.3E-22 127.8 5.4 141 25-170 1-173 (193)
29 TIGR01510 coaD_prev_kdtB pante 99.7 3.7E-16 8.1E-21 117.7 10.9 135 23-170 1-137 (155)
30 PTZ00308 ethanolamine-phosphat 99.7 2.9E-16 6.2E-21 132.2 10.9 130 22-168 12-144 (353)
31 cd02168 NMNAT_Nudix Nicotinami 99.7 1.1E-15 2.3E-20 118.0 12.8 130 24-169 2-145 (181)
32 cd02166 NMNAT_Archaea Nicotina 99.7 4.2E-16 9.1E-21 118.4 10.1 130 23-169 1-138 (163)
33 PRK06973 nicotinic acid mononu 99.7 3.1E-16 6.7E-21 126.0 9.4 82 21-108 22-107 (243)
34 cd02174 CCT CTP:phosphocholine 99.6 2E-15 4.3E-20 113.2 11.1 130 22-170 3-139 (150)
35 PRK05379 bifunctional nicotina 99.6 3E-15 6.5E-20 125.9 12.3 135 20-171 5-152 (340)
36 cd02167 NMNAT_NadR Nicotinamid 99.6 9.3E-15 2E-19 110.5 12.6 131 23-167 1-147 (158)
37 cd02165 NMNAT Nicotinamide/nic 99.6 8E-16 1.7E-20 119.5 6.5 135 23-169 1-171 (192)
38 PRK07152 nadD putative nicotin 99.6 8.2E-16 1.8E-20 129.3 6.7 144 22-170 2-169 (342)
39 COG0669 CoaD Phosphopantethein 99.6 1.5E-15 3.3E-20 112.6 6.9 135 21-173 2-144 (159)
40 cd02173 ECT CTP:phosphoethanol 99.6 9.2E-15 2E-19 109.8 11.1 130 22-169 3-140 (152)
41 PRK01153 nicotinamide-nucleoti 99.6 4.7E-15 1E-19 113.8 8.2 131 23-170 2-140 (174)
42 COG0615 TagD Cytidylyltransfer 99.6 2.1E-14 4.6E-19 105.4 10.3 132 23-167 3-138 (140)
43 PF01467 CTP_transf_2: Cytidyl 99.6 1.6E-15 3.6E-20 112.2 4.2 62 25-89 1-63 (157)
44 PRK13793 nicotinamide-nucleoti 99.5 2.9E-14 6.3E-19 110.7 9.2 84 20-108 3-86 (196)
45 PRK08099 bifunctional DNA-bind 99.5 1.9E-13 4.1E-18 117.1 12.8 136 17-167 48-204 (399)
46 TIGR00125 cyt_tran_rel cytidyl 99.5 4.9E-14 1.1E-18 90.9 6.6 61 23-85 1-61 (66)
47 PLN02945 nicotinamide-nucleoti 99.5 7.1E-14 1.5E-18 112.1 6.3 82 15-99 16-100 (236)
48 PRK11316 bifunctional heptose 99.5 1.7E-13 3.7E-18 119.4 8.6 130 21-167 340-472 (473)
49 PTZ00308 ethanolamine-phosphat 99.4 1.3E-12 2.9E-17 110.1 12.0 132 21-170 192-331 (353)
50 PLN02406 ethanolamine-phosphat 99.4 1.7E-12 3.6E-17 111.0 12.2 127 21-168 53-190 (418)
51 cd09286 NMNAT_Eukarya Nicotina 99.4 3.8E-13 8.2E-18 107.1 6.0 72 24-99 3-79 (225)
52 PLN02413 choline-phosphate cyt 99.4 1.1E-11 2.4E-16 100.5 12.5 134 17-169 23-165 (294)
53 cd02156 nt_trans nucleotidyl t 99.4 1.7E-12 3.8E-17 91.4 6.8 58 23-84 1-58 (105)
54 TIGR00124 cit_ly_ligase [citra 99.4 1.6E-11 3.5E-16 102.9 13.3 138 21-170 139-310 (332)
55 PLN02406 ethanolamine-phosphat 99.3 1.3E-11 2.8E-16 105.6 11.6 137 16-170 246-391 (418)
56 TIGR01526 nadR_NMN_Atrans nico 99.3 7.1E-11 1.5E-15 98.8 13.6 64 22-89 2-65 (325)
57 PRK00380 panC pantoate--beta-a 99.3 3.6E-11 7.7E-16 98.6 9.7 123 23-162 26-189 (281)
58 cd00560 PanC Pantoate-beta-ala 99.2 4.9E-11 1.1E-15 97.5 9.6 125 21-161 24-189 (277)
59 COG1056 NadR Nicotinamide mono 99.2 1.2E-10 2.6E-15 88.5 9.2 140 21-171 3-143 (172)
60 PF08218 Citrate_ly_lig: Citra 99.0 6.9E-10 1.5E-14 84.4 6.9 134 27-173 5-169 (182)
61 COG2870 RfaE ADP-heptose synth 98.9 2.8E-09 6E-14 90.1 7.6 126 23-169 334-466 (467)
62 KOG2803 Choline phosphate cyti 98.8 2.5E-08 5.3E-13 81.7 7.7 124 23-167 10-140 (358)
63 PRK13670 hypothetical protein; 98.8 8.5E-09 1.8E-13 88.2 4.9 88 23-120 3-103 (388)
64 KOG2803 Choline phosphate cyti 98.6 3.3E-07 7E-12 75.2 9.8 132 21-171 198-335 (358)
65 COG3053 CitC Citrate lyase syn 98.4 1.3E-06 2.8E-11 71.4 8.0 139 21-171 145-318 (352)
66 TIGR00018 panC pantoate--beta- 98.4 1.7E-06 3.6E-11 71.0 8.7 57 22-84 25-85 (282)
67 TIGR00339 sopT ATP sulphurylas 98.4 9.4E-06 2E-10 69.5 13.6 94 22-121 184-289 (383)
68 PLN02660 pantoate--beta-alanin 98.3 5.2E-06 1.1E-10 68.2 9.9 57 22-84 24-84 (284)
69 PRK13671 hypothetical protein; 98.1 1E-05 2.3E-10 66.9 6.6 57 25-84 4-61 (298)
70 COG2046 MET3 ATP sulfurylase ( 97.9 0.0003 6.5E-09 59.4 12.6 143 21-171 183-359 (397)
71 PF01747 ATP-sulfurylase: ATP- 97.6 0.002 4.2E-08 51.1 12.8 144 22-171 21-197 (215)
72 cd00517 ATPS ATP-sulfurylase. 97.6 0.0028 6E-08 53.9 14.1 143 22-171 157-336 (353)
73 KOG2804 Phosphorylcholine tran 97.6 0.00012 2.6E-09 60.1 5.3 68 23-91 65-135 (348)
74 PRK04149 sat sulfate adenylylt 97.5 0.0033 7.2E-08 54.0 13.8 143 22-171 187-363 (391)
75 PRK05537 bifunctional sulfate 97.2 0.013 2.9E-07 52.7 13.7 94 22-121 187-290 (568)
76 PF05636 HIGH_NTase1: HIGH Nuc 97.0 0.0014 3E-08 56.4 5.9 58 24-84 4-62 (388)
77 COG1323 Predicted nucleotidylt 96.1 0.012 2.6E-07 50.0 5.4 56 26-84 6-62 (358)
78 COG0414 PanC Panthothenate syn 95.9 0.14 3E-06 42.0 10.5 62 22-84 22-85 (285)
79 PRK13477 bifunctional pantoate 94.9 0.15 3.2E-06 45.5 8.2 61 23-84 21-83 (512)
80 KOG3199 Nicotinamide mononucle 94.6 0.15 3.3E-06 40.2 6.7 59 23-84 10-73 (234)
81 PF02569 Pantoate_ligase: Pant 89.9 0.67 1.5E-05 38.2 5.0 62 22-84 22-85 (280)
82 KOG3042 Panthothenate syntheta 66.9 11 0.00023 30.2 4.2 63 22-84 24-87 (283)
83 KOG3199 Nicotinamide mononucle 58.8 5.7 0.00012 31.5 1.4 15 155-169 195-209 (234)
84 PLN02341 pfkB-type carbohydrat 35.6 9.4 0.0002 33.7 -0.7 27 22-48 415-441 (470)
85 PF14781 BBS2_N: Ciliary BBSom 35.3 14 0.0003 27.3 0.2 11 25-35 1-11 (136)
86 PRK13354 tyrosyl-tRNA syntheta 22.6 3.7E+02 0.0081 23.4 6.9 27 23-49 34-63 (410)
87 PF11868 DUF3388: Protein of u 20.3 71 0.0015 24.6 1.7 14 156-169 84-97 (192)
No 1
>PLN02388 phosphopantetheine adenylyltransferase
Probab=100.00 E-value=2.9e-38 Score=241.17 Aligned_cols=173 Identities=82% Similarity=1.228 Sum_probs=154.6
Q ss_pred ccccccccccCCCCCCCCCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHH
Q 030486 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (176)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~ 82 (176)
|.-..+|++-++.++.+.++.++++|+|||+|.||+.||++|.+.+++.++++++.++.+.+++.+..++|+++|.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~ 80 (177)
T PLN02388 1 MVTVKDSVADSKLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVE 80 (177)
T ss_pred CcccccccccccCCCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999997778888888887655555678999999999999
Q ss_pred HHHHhcCCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHH
Q 030486 83 AYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTL 162 (176)
Q Consensus 83 ~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~I 162 (176)
+++..+.|+..+++.+|.|+|||+.+..++++|||++|+..|+..+|+.|++.|++++++.+|+++..+.++.+||||+|
T Consensus 81 ~fl~~~~p~~~~~i~~i~D~~Gpt~~~~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~i 160 (177)
T PLN02388 81 EYIKSIKPELVVQAEPIIDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTL 160 (177)
T ss_pred HHHHHcCCCceEEEEEecCCCCCcccCCCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHH
Confidence 99999998888888899999999998889999999999999999999999999999999999999886445899999999
Q ss_pred HHHHHhhcc-ccCC
Q 030486 163 RKLEAEKAK-NEQP 175 (176)
Q Consensus 163 R~~i~~g~~-~~~~ 175 (176)
|+++.+..+ ++||
T Consensus 161 R~~~~~~~~~~~~~ 174 (177)
T PLN02388 161 RRLEAEKAVKQKQP 174 (177)
T ss_pred HHHHHHHHHhcccc
Confidence 999976443 4454
No 2
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=100.00 E-value=1.4e-33 Score=209.84 Aligned_cols=142 Identities=47% Similarity=0.842 Sum_probs=127.9
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~ 102 (176)
.|+++|+|||+|.||+.||++|.+.+.+.+++++|+++++.+|+.+..++|+++|.++++.++..+.|...+++++|.|+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~ 80 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP 80 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence 37899999999999999999999998667888999998666555556789999999999999999887666777889999
Q ss_pred CCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHH
Q 030486 103 YGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRK 164 (176)
Q Consensus 103 ~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~ 164 (176)
+||+.+..++++|||++|+..|+..+|+.|++.+++++++.+|+.+....++.+||||+||+
T Consensus 81 ~Gpt~~~~~~d~lVVS~ET~~~~~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 81 YGPTGTDPDLEAIVVSPETYPGALKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCcccCCCCCEEEEcHHHhhhHHHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 99999888999999999999999999999999999999999999987534799999999996
No 3
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.96 E-value=1.8e-28 Score=184.29 Aligned_cols=143 Identities=37% Similarity=0.689 Sum_probs=124.7
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccC
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~ 101 (176)
..|+++|+||++|.||+.+|+.|++.+ +.++|+++.++.+++.+. .++.++++|.+|++.+++.+.|...+.+..+.|
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~-d~livgi~~d~~~~~~K~-~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELG-KRVTIGLTSDEFAKSYKK-HKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcC-CEEEEEEcCCccccccCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 579999999999999999999999997 568888999876543332 578999999999999998877776777777889
Q ss_pred CCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 102 PYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 102 ~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
.++|+++. ++++||+|+|+..|+..+|+.+++.++.++++.+++.+.. .++.++|||+||+.+.+
T Consensus 80 ~~gp~~~~-~~d~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~-~~~~~~SSt~Ir~~~~~ 144 (153)
T PRK00777 80 PYGPALED-DFDAIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLA-EDGKPISSTRIRRGEID 144 (153)
T ss_pred cCCCcccc-CCCEEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeec-CCCCeeeHHHHHHhhhc
Confidence 99999875 5999999999999999999999999999999999999875 36889999999998855
No 4
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=180.44 Aligned_cols=145 Identities=41% Similarity=0.737 Sum_probs=129.5
Q ss_pred CCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 20 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
++..++.+||||.+|.||++||+.|.+.+. .+++++|.|+++..+ ....+.|++.|.+-|.+++..+.++..+ ++.|
T Consensus 4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~-~v~IGlTsDe~~k~~-k~~~i~p~~~R~~~l~~fl~~~~~~~~~-iv~i 80 (158)
T COG1019 4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGD-RVTIGLTSDELAKKK-KKEKIEPYEVRLRNLRNFLESIKADYEE-IVPI 80 (158)
T ss_pred cceEEEecccchhhhhhHHHHHHHHHHhCC-eEEEEEccHHHHHHh-ccccCCcHHHHHHHHHHHHHHhcCCcce-EEEe
Confidence 567899999999999999999999999984 789999999887654 3467899999999999999998876553 6789
Q ss_pred cCCCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 100 TDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 100 ~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
.|+||++.+...+++|||++|+.-|+..+|+.|.+.|+++|++++|+.+.+ .+|.+||||+||+-..+
T Consensus 81 ~Dp~G~t~~~~~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~a-edg~~iSSTrIrrgeId 148 (158)
T COG1019 81 DDPYGPTVEDPDFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLA-EDGKPISSTRIRRGEID 148 (158)
T ss_pred cCCCCCCCCcCceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhh-hcCCccchhhhhhhccC
Confidence 999999998889999999999999999999999999999999999999876 47889999999986654
No 5
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.94 E-value=3.8e-27 Score=181.63 Aligned_cols=140 Identities=22% Similarity=0.260 Sum_probs=99.6
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcC--CeEEEEccCCCC----CCcCcCCCCCCHHHHHHHHHHH------------
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPML----TNKQFAELIQPVDERMRNVEAY------------ 84 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~--~~~v~vt~~~~~----~~k~~~~~l~~~~eR~~~l~~~------------ 84 (176)
.++++|+|||+|+||+.|+++|.+.|++ ...+++++++.. ..++...++++.++|.++++++
T Consensus 1 ~vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~vd~v~~~~f~~ 80 (180)
T cd02064 1 TVVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLGVDYLLVLPFDK 80 (180)
T ss_pred CEEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcCCCEEEEeCCCH
Confidence 3789999999999999999999999864 256778877522 2223346789999999999986
Q ss_pred -HHhcCCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhhhH---HhCCCCceeEEEEeeeecCCCCCeeehH
Q 030486 85 -IKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKR---ADRGLSQLKIEVVDLVSEGSSGDKLSSS 160 (176)
Q Consensus 85 -~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~---~~~~~~~l~v~~v~~~~~~~~~~~ISST 160 (176)
+++++|++|++.+ +...+++++|+|+||+||.++.++.. ....-..+.+..++.... ++..||||
T Consensus 81 ~~~~~s~~~Fi~~i---------l~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~--~~~~iSST 149 (180)
T cd02064 81 EFASLSAEEFVEDL---------LVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTL--DGERVSST 149 (180)
T ss_pred HHHcCCHHHHHHHH---------HhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEec--CCcEEcHH
Confidence 1223344443311 11227999999999999976543332 222222346777777653 68899999
Q ss_pred HHHHHHHhhcccc
Q 030486 161 TLRKLEAEKAKNE 173 (176)
Q Consensus 161 ~IR~~i~~g~~~~ 173 (176)
+||++|++|+++.
T Consensus 150 ~IR~~i~~G~i~~ 162 (180)
T cd02064 150 RIREALAEGDVEL 162 (180)
T ss_pred HHHHHHHhCCHHH
Confidence 9999999999865
No 6
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=99.94 E-value=1e-26 Score=182.63 Aligned_cols=155 Identities=51% Similarity=0.837 Sum_probs=143.3
Q ss_pred ccCCCCCCCCCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCC
Q 030486 11 VNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP 90 (176)
Q Consensus 11 ~~~~~~~~~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~ 90 (176)
+-.+.+|-+.|..++.|||||.+|.||.-||+.|.+++.++++|+++.++.+.+|..+++|.|.++|.+-+.+++.++.|
T Consensus 132 e~e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp 211 (293)
T KOG3351|consen 132 ESEKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKP 211 (293)
T ss_pred ccccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 44556677778899999999999999999999999999989999999999888888888999999999999999999999
Q ss_pred CceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 91 ELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 91 ~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
+..++.++|.|+|||+....+++++||..|+.-|+..+|..|.++|+.++.+.+|+++. ++.++|||.+|+...+
T Consensus 212 ~l~~~~vpi~Dp~GPt~~d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~---~~~kls~t~~~~~kvS 286 (293)
T KOG3351|consen 212 DLNVRVVPIHDPFGPTITDPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLY---DAQKLSSTENRELKVS 286 (293)
T ss_pred CceEEEEecccCCCCCccCCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeecc---ChhhcchhHHHHhhhc
Confidence 99999889999999999999999999999999999999999999999999999999987 5789999999987643
No 7
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.94 E-value=4.8e-27 Score=192.59 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=103.8
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHHhcCC--eEEEEccCC----CCCCcCcCCCCCCHHHHHHHHHHH-------------
Q 030486 24 VVLGGTFDRLHDGHRLFLKASAELARDR--IVVGVCDGP----MLTNKQFAELIQPVDERMRNVEAY------------- 84 (176)
Q Consensus 24 vv~~G~FDgvH~GH~~ll~~a~~~~~~~--~~v~vt~~~----~~~~k~~~~~l~~~~eR~~~l~~~------------- 84 (176)
++++|+|||+|+|||+||++|++.|++. ..+++||++ ++.+...+. |++.++|.++++++
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~-l~~~~~k~~~l~~~Gvd~~~~~~F~~~ 79 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA-LTPLEDKARQLQIKGVEQLLVVVFDEE 79 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCC-CCCHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 5899999999999999999999988653 467889985 222222234 99999999999886
Q ss_pred HHhcCCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhh---hHHhCCCCceeEEEEeeeecCCCCCeeehHH
Q 030486 85 IKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNK---KRADRGLSQLKIEVVDLVSEGSSGDKLSSST 161 (176)
Q Consensus 85 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~---~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~ 161 (176)
++.++|++|++.+ +. ..+++++||||+||+||.++.++ ++.++.-..+.+.+++.... + .+||||+
T Consensus 80 ~a~ls~e~Fi~~~-l~-------~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~--~-~~ISST~ 148 (288)
T TIGR00083 80 FANLSALQFIDQL-IV-------KHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQ--D-IRISSSA 148 (288)
T ss_pred HHcCCHHHHHHHH-HH-------hccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccC--C-CeECHHH
Confidence 5667888887632 21 13589999999999999665433 44444333456667776552 4 8999999
Q ss_pred HHHHHHhhccccC
Q 030486 162 LRKLEAEKAKNEQ 174 (176)
Q Consensus 162 IR~~i~~g~~~~~ 174 (176)
||++|.+|++++.
T Consensus 149 IR~~l~~G~i~~A 161 (288)
T TIGR00083 149 IRQALKNGDLELA 161 (288)
T ss_pred HHHHHHcCCHHHH
Confidence 9999999998753
No 8
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.94 E-value=1e-26 Score=190.98 Aligned_cols=141 Identities=26% Similarity=0.351 Sum_probs=110.3
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCC--eEEEEccCC----CCCCcCcCCCCCCHHHHHHHHHHH----------
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDR--IVVGVCDGP----MLTNKQFAELIQPVDERMRNVEAY---------- 84 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~--~~v~vt~~~----~~~~k~~~~~l~~~~eR~~~l~~~---------- 84 (176)
.++++++|+|||+|+|||+|+++|.+.|.+. .++++||++ ++.....+..|+++++|.+.++.+
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~F 94 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDF 94 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcCCcEEEEEeC
Confidence 5799999999999999999999999988654 467789985 222333456799999999999987
Q ss_pred ---HHhcCCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhh---hHHhCCCCceeEEEEeeeecCCCCCeee
Q 030486 85 ---IKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNK---KRADRGLSQLKIEVVDLVSEGSSGDKLS 158 (176)
Q Consensus 85 ---~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~---~~~~~~~~~l~v~~v~~~~~~~~~~~IS 158 (176)
+++++|+.|++ . + +..++++.+|||+||+||.++-++ ++..+.- .++++.++.+.. ++.+||
T Consensus 95 ~~~fa~ls~~~Fv~-~-l-------v~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~~~~--~~~~iS 162 (304)
T COG0196 95 DLEFANLSAEEFVE-L-L-------VEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKINE--EGIRIS 162 (304)
T ss_pred CHhHhhCCHHHHHH-H-H-------HhccCCcEEEEecccccCCCCCCCHHHHHHhccC-CceEEEeccEec--CCcEEc
Confidence 56677877776 2 2 224689999999999999765543 3333332 567888888874 788999
Q ss_pred hHHHHHHHHhhcccc
Q 030486 159 SSTLRKLEAEKAKNE 173 (176)
Q Consensus 159 ST~IR~~i~~g~~~~ 173 (176)
||.||+++.+|++.+
T Consensus 163 St~IR~~L~~gdl~~ 177 (304)
T COG0196 163 STAIRQALREGDLEE 177 (304)
T ss_pred hHHHHHHHhcCCHHH
Confidence 999999999999864
No 9
>PRK07143 hypothetical protein; Provisional
Probab=99.94 E-value=9.7e-27 Score=189.86 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=101.0
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCC--CCCcCcCCCCCCHHHHHHHHHHH-------------H
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY-------------I 85 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~--~~~k~~~~~l~~~~eR~~~l~~~-------------~ 85 (176)
.++++++|+|||+|+|||+||++|++.+ ...+++||++. +.. ..+.+++|.++|.++++++ +
T Consensus 15 ~~~vvaiG~FDGvH~GHq~Ll~~a~~~~--~~~vV~tF~~P~~~~~-~~~~~l~~~~er~~~l~~~Gvd~~~~~~F~~~~ 91 (279)
T PRK07143 15 EKPTFVLGGFESFHLGHLELFKKAKESN--DEIVIVIFKNPENLPK-NTNKKFSDLNSRLQTLANLGFKNIILLDFNEEL 91 (279)
T ss_pred CCeEEEEccCCcCCHHHHHHHHHHHHCC--CcEEEEEeCChHHhcc-cCcccCCCHHHHHHHHHHCCCCEEEEeCCCHHH
Confidence 4689999999999999999999999754 23445666531 112 2245789999999999876 3
Q ss_pred HhcCCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHH
Q 030486 86 KSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKL 165 (176)
Q Consensus 86 ~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~ 165 (176)
+.++|++|++.+ + ..+++.||||+||+||.++.++......+-. .+.+++.+.. ++.+||||+||++
T Consensus 92 a~ls~e~Fi~~l-l---------~l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~-~v~~v~~~~~--~g~~ISST~IR~~ 158 (279)
T PRK07143 92 QNLSGNDFIEKL-T---------KNQVSFFVVGKDFRFGKNASWNADDLKEYFP-NVHIVEILKI--NQQKISTSLLKEF 158 (279)
T ss_pred hCCCHHHHHHHH-H---------hcCCCEEEECCCcccCCCCCCCHHHHHHhCC-cEEEeCCEEc--CCcEEcHHHHHHH
Confidence 556677666521 1 2478999999999999765544433333322 6777787764 7899999999999
Q ss_pred HHhhccccC
Q 030486 166 EAEKAKNEQ 174 (176)
Q Consensus 166 i~~g~~~~~ 174 (176)
|++|++.+.
T Consensus 159 l~~G~i~~A 167 (279)
T PRK07143 159 IEFGDIELL 167 (279)
T ss_pred HHcCCHHHH
Confidence 999998753
No 10
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=186.18 Aligned_cols=140 Identities=34% Similarity=0.544 Sum_probs=121.1
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~ 102 (176)
+|+++||||.+|.||..||++|++.+ +.++|++|.|..+.+++. .+ .|+++|.+++++++....++ +.+..|.|+
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g-d~LiVgvt~D~~~~~~k~-~~-~~~e~R~~~v~~fl~~~~~~--~~i~~i~D~ 76 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG-DEVVIGLTSDEYVRKNKV-YP-IPYEDRKRKLENFIKKFTNK--FRIRPIDDR 76 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC-CEEEEEEccHHHHHhcCC-CC-CCHHHHHHHHHHHHHhcCCc--EEEEecCCC
Confidence 68999999999999999999999877 578999999986653332 23 89999999999998776543 455678999
Q ss_pred CCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 103 YGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 103 ~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
|||+.+..++|+||||+|+.+|+..+|+.|++.+++++++++|+.+.. .++.+||||+||+...+
T Consensus 77 ~Gpt~~~~~~d~IVVS~ET~~~~~~IN~~R~e~Gl~pleIv~I~~v~~-~d~~~iSSTrIr~~eid 141 (322)
T PRK01170 77 YGNTLYEEDYEIIVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVLA-EDLFPISSTRIINGEID 141 (322)
T ss_pred CCCCcccCCCCEEEEeccccccHHHHHHHHHHCCCCceEEEEEEeEEc-CCCCcccHHHHhhhhcc
Confidence 999998889999999999999999999999999999999999999875 36788999999987654
No 11
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.93 E-value=2.5e-26 Score=189.93 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=104.8
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCC--eEEEEccCCC----CCCcCcCCCCCCHHHHHHHHHHH------------
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDR--IVVGVCDGPM----LTNKQFAELIQPVDERMRNVEAY------------ 84 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~--~~v~vt~~~~----~~~k~~~~~l~~~~eR~~~l~~~------------ 84 (176)
+++++|+|||+|+||++||++|++.|+.. .++++||++. +..++.+.++++.++|.++++++
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~gVD~~~~~~F~~ 94 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDE 94 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcCCCEEEEecCCH
Confidence 89999999999999999999999998644 3567888852 22233356799999999999887
Q ss_pred -HHhcCCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhhh---HHhCCCCceeEEEEeeeecCCCCCeeehH
Q 030486 85 -IKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKK---RADRGLSQLKIEVVDLVSEGSSGDKLSSS 160 (176)
Q Consensus 85 -~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~---~~~~~~~~l~v~~v~~~~~~~~~~~ISST 160 (176)
+++++|++|++.+ + ...++++++|||+||+||.++.++. +.++....+.+.+++.+. .++.+||||
T Consensus 95 ~~~~ls~e~Fi~~~-l-------~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~--~~~~~ISST 164 (305)
T PRK05627 95 EFAKLSAEEFIEDL-L-------VKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVK--EDGERVSST 164 (305)
T ss_pred HHhcCCHHHHHHHH-H-------HhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEe--cCCCcCchH
Confidence 2344555555421 1 1135899999999999997654333 333222345777787765 378999999
Q ss_pred HHHHHHHhhccccC
Q 030486 161 TLRKLEAEKAKNEQ 174 (176)
Q Consensus 161 ~IR~~i~~g~~~~~ 174 (176)
+||++|.+|++.+.
T Consensus 165 ~IR~~I~~G~i~~A 178 (305)
T PRK05627 165 AIRQALAEGDLELA 178 (305)
T ss_pred HHHHHHHcCCHHHH
Confidence 99999999998753
No 12
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.93 E-value=1.8e-26 Score=174.25 Aligned_cols=131 Identities=24% Similarity=0.362 Sum_probs=87.3
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCC--eEEEEccCC----CCCCcCcCCCCCCHHHHHHHHHHH----------
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDR--IVVGVCDGP----MLTNKQFAELIQPVDERMRNVEAY---------- 84 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~--~~v~vt~~~----~~~~k~~~~~l~~~~eR~~~l~~~---------- 84 (176)
.+.++++|+|||+|+|||+||++|.+.|++. ..+++||++ ++.+...+..|+|.++|.++++.+
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F 84 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPF 84 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-C
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 5689999999999999999999999998543 567789885 233234456799999999999986
Q ss_pred ---HHhcCCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhh---hHHhCCCCceeEEEEeeeecCCCCCeee
Q 030486 85 ---IKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNK---KRADRGLSQLKIEVVDLVSEGSSGDKLS 158 (176)
Q Consensus 85 ---~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~---~~~~~~~~~l~v~~v~~~~~~~~~~~IS 158 (176)
++.++|++|++.+ |. ..++++.||||+||+||.++.++ ++..+.-..+.+.+++.+.. ++.+||
T Consensus 85 ~~~~~~ls~~~Fi~~i-L~-------~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~--~~~~IS 154 (157)
T PF06574_consen 85 TEEFANLSPEDFIEKI-LK-------EKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKI--DGEKIS 154 (157)
T ss_dssp CCHHCCS-HHHHHHHH-CC-------CHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EE--TTEE-S
T ss_pred hHHHHcCCHHHHHHHH-HH-------hcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEc--CCcEeC
Confidence 3455666666521 21 14699999999999999775433 44444333478888998874 799999
Q ss_pred hHH
Q 030486 159 SST 161 (176)
Q Consensus 159 ST~ 161 (176)
||+
T Consensus 155 Str 157 (157)
T PF06574_consen 155 STR 157 (157)
T ss_dssp HHH
T ss_pred CCC
Confidence 996
No 13
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.87 E-value=1.4e-22 Score=149.26 Aligned_cols=127 Identities=26% Similarity=0.316 Sum_probs=86.9
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhc------CCCceEE
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI------KPELVVQ 95 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~------~~~~~v~ 95 (176)
.+++++|+|||+|.||+.++++|.+.+ +.+++++++++.+.+.+ ..++++.++|.++++++ ..+ +|++|++
T Consensus 2 ~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~l~v~v~~~~~~~~~~-~~~~~~~~eR~~~l~~~-~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 2 KRVYAAGTFDIIHPGHIRFLEEAKKLG-DYLIVGVARDETVAKIK-RRPILPEEQRAEVVEAL-KYVDEVILGHPWSYFK 78 (136)
T ss_pred eEEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECCcHHHHhcC-CCCCCCHHHHHHHHHcC-CCcCEEEECCCCCHhH
Confidence 578999999999999999999999998 46788899986543222 23789999999999874 222 1222221
Q ss_pred EeeccCCCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHH
Q 030486 96 TEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEA 167 (176)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~ 167 (176)
.+....++++|+|+||+||.++.........+ ...+.+++ .++..||||+||++|.
T Consensus 79 ----------~l~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~-g~~~~~~~-----~~~~~vSSt~Ir~~i~ 134 (136)
T cd02170 79 ----------PLEELKPDVIVLGDDQKNGVDEEEVYEELKKR-GKVIEVPR-----KKTEGISSSDIIKRIL 134 (136)
T ss_pred ----------HHHHHCCCEEEECCCCCCCCcchhHHHHHHHC-CeEEEECC-----CCCCCCcHHHHHHHHH
Confidence 12235679999999999996544332222211 11122222 1578899999999985
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.86 E-value=7.7e-22 Score=162.59 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=95.3
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhc------------
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI------------ 88 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~------------ 88 (176)
.+++...|+|||+|+||+.++++|.+.++ ...|++-.. + ....+.++|++|++.++++.
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d-~~~V~i~~~-----~---~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~ 184 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAEND-WVHLFVVSE-----D---KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYI 184 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCC-eEEEEEEcC-----C---CCCCCHHHHHHHHHHHhCCCCCEEEEecCCee
Confidence 57888999999999999999999999885 333333221 1 23579999999999986543
Q ss_pred ------------------------CCCceEEEeeccCCCCCccccCCccEEEEcCCcccChhhhhhhHH--hCCCCceeE
Q 030486 89 ------------------------KPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRA--DRGLSQLKI 142 (176)
Q Consensus 89 ------------------------~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~--~~~~~~l~v 142 (176)
+|++|++ + | ...++++.+|||+||+||.++.++... .+.-..+++
T Consensus 185 v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-i-L-------~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v 255 (297)
T cd02169 185 ISSATFPSYFIKEQDVVIKAQTALDARIFRK-Y-I-------APALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEV 255 (297)
T ss_pred eccccChhhhcCChhHHHHHHhcCCHHHHHH-H-H-------HHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEE
Confidence 2333332 1 1 013689999999999999765544222 221124677
Q ss_pred EEEeeeecCCCCCeeehHHHHHHHHhhcccc
Q 030486 143 EVVDLVSEGSSGDKLSSSTLRKLEAEKAKNE 173 (176)
Q Consensus 143 ~~v~~~~~~~~~~~ISST~IR~~i~~g~~~~ 173 (176)
.+++.+. .++.+||||+||++|++|++..
T Consensus 256 ~~v~~~~--~~g~~ISST~IR~~l~~G~v~~ 284 (297)
T cd02169 256 IEIERKK--YDGQPISASTVRQLLKEGNLEE 284 (297)
T ss_pred EEecccc--cCCcEEcHHHHHHHHHcCCHHH
Confidence 7788766 4789999999999999999864
No 15
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.86 E-value=1.9e-21 Score=144.97 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=84.0
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCC-CcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~-~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
.++++++|+|||+|+||+++|++|++.++ .++|++++++... .++...++++.++|.++++++ ..++ .+- ..
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~-~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~-~~VD---~vi--~f 83 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALGD-RLVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL-SSVD---YVV--IF 83 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhCC-ccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc-CCCC---EEE--EC
Confidence 46899999999999999999999999985 5788899987432 122224689999999999886 1111 110 01
Q ss_pred cCCCCC--ccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHH
Q 030486 100 TDPYGP--SIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEA 167 (176)
Q Consensus 100 ~~~~~~--~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~ 167 (176)
+...+ .+...+++++|+|+||+|......+.-... ...+..++. ...||||.||++|.
T Consensus 84 -~~~~~~~fi~~l~~~~vv~G~d~~~~~~~~~~~~~~~---g~~v~~~~~------~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 84 -DEDTPEELIGELKPDILVKGGDYKVETLVGAELVESY---GGQVVLLPF------VEGRSTTAIIEKIL 143 (144)
T ss_pred -CCCCHHHHHHHhCCCEEEECCCCCCCcchhHHHHHHc---CCEEEEEeC------CCCcCHHHHHHHHh
Confidence 11111 022468999999999998531100111111 124444442 23699999999985
No 16
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.86 E-value=1e-21 Score=143.50 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=82.5
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH--HHhcCCCceEEEeec
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY--IKSIKPELVVQTEPI 99 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~--~~~~~~~~~v~~~~l 99 (176)
++++++|+|||+|+||+.+|++|++.++ .+++++++++....+ .+.+++|.++|.++++++ ++.+-+....
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~-~l~v~v~~d~~~~~~-~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~----- 74 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERAKALGD-KLIVAVSTDEFNAGK-GKKAVIPYEQRAEILESIRYVDLVIPETNW----- 74 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHHHHhCC-EEEEEEeccHhHHhc-CCCCCCCHHHHHHHHHcCCccCEEecCCCc-----
Confidence 5799999999999999999999999985 477778887643322 245789999999999875 2211110000
Q ss_pred cCCCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHH
Q 030486 100 TDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEA 167 (176)
Q Consensus 100 ~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~ 167 (176)
+.+...+...+++++++|+||..... .++.++ ++..++ .+.+||||+||++|.
T Consensus 75 -~~f~~~~~~l~~~~vv~G~d~~g~~~---~l~~~~-----~v~~~~------~~~~iSSt~Ir~~i~ 127 (129)
T cd02171 75 -EQKIEDIKKYNVDVFVMGDDWEGKFD---FLKEYC-----EVVYLP------RTKGISSTQLKEMLK 127 (129)
T ss_pred -cChHHHHHHhCCCEEEECCCCcchHH---HHHhCc-----EEEEeC------CCCCcChHHHHHHHh
Confidence 00000122468999999999953222 223222 233333 367899999999986
No 17
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.84 E-value=2.1e-21 Score=141.28 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=82.0
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH--HHhc----CCCceEEEe
Q 030486 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY--IKSI----KPELVVQTE 97 (176)
Q Consensus 24 vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~--~~~~----~~~~~v~~~ 97 (176)
++++|+|||+|+||+.+|++|++.+ +.++|++++++...+++ +.++++.++|.++++++ ++.+ +++.|++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~-~~~iv~v~~d~~~~~~~-~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~-- 76 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG-DYLIVALSTDEFNLQKQ-KKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQ-- 76 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC-CEEEEEEechHHHhhcC-CCCCCCHHHHHHHHHcCCCccEEecCCCccchHH--
Confidence 4789999999999999999999987 46788889987554332 46789999999998875 2222 1121211
Q ss_pred eccCCCCCccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHH
Q 030486 98 PITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLE 166 (176)
Q Consensus 98 ~l~~~~~~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i 166 (176)
.+...+++.+++|+||....+ .+.+.. .+.+..++ .+..||||.||+++
T Consensus 77 --------~l~~~~~~~vv~G~D~~g~~~---~l~~~~---~~~v~~v~------~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 77 --------DIIDFNIDVFVMGDDWEGKFD---FLKDEC---PLKVVYLP------RTEGVSTTKIKKEI 125 (125)
T ss_pred --------HHHHcCCCEEEECCCccchHH---HHhhcc---CcEEEEeC------CCCCccHHHHHhhC
Confidence 123468999999999953322 233332 23444444 35679999999874
No 18
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.84 E-value=9.8e-21 Score=141.07 Aligned_cols=133 Identities=21% Similarity=0.148 Sum_probs=85.6
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeecc
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~ 100 (176)
.++++++|+|||+|+||+++|++|++.++ .+++++++++.+.+.+ +.+++|.+||.++++++ . +++.+.+.
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~vv~~~~d~~~~~~~-~~~i~~~~eR~~~l~~l----g---~VD~vi~~ 74 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLGD-ILVVSLTSDRYVNKGP-GRPIFPEDLRAEVLAAL----G---FVDYVVLF 74 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhCC-eEEEEEeChHHhccCC-CCCCCCHHHHHHHHHcc----C---CccEEEEC
Confidence 36899999999999999999999999984 6777888876554332 46899999999999775 2 01111111
Q ss_pred CCCCC--ccccCCccEEEEcCCcccChhhhhhhHHhCCCCce---eEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 101 DPYGP--SIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQL---KIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 101 ~~~~~--~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l---~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
+...+ .+..++++.+|+|+||+||.+..+.. .+++.+.+ .-.. .... ...+|||.|.++|..
T Consensus 75 ~~~~~~~fi~~l~~~~vv~G~d~~fg~~~~~~~-~~g~~~~l~~~g~~~-~~~~----~~~~sts~li~~i~~ 141 (144)
T cd02172 75 DNPTALEIIDALQPNIYVKGGDYENPENDVTGK-IAPEAEAVKAYGGKI-VFTG----EIVFSSSALINRIFD 141 (144)
T ss_pred CCCCHHHHHHHhCCCEEEECCCcccCccccccc-hhhhHHHHHHhCCEE-EEec----CCCcchHHHHHHHHh
Confidence 10000 12246899999999999996542211 12222211 1111 1112 345899999998864
No 19
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.83 E-value=7e-20 Score=134.49 Aligned_cols=134 Identities=21% Similarity=0.281 Sum_probs=85.1
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~ 102 (176)
.++++|+|||+|+||+.++++|++.+.+.+++++..++....+ +..+.+.++|.+|++.+.... .++...+....
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~~~~---~~v~~~~~~~~ 75 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEILKDR---LKVVPVDFPEV 75 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhccCC---cEEEEEecChh
Confidence 3789999999999999999999999833455555444322111 346789999999999986521 23332222111
Q ss_pred CCCc---------cccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHH
Q 030486 103 YGPS---------IVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKL 165 (176)
Q Consensus 103 ~~~~---------~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~ 165 (176)
.+. ....+++++++|.|+.+|..+.++.........+++..++... ++..||||.||++
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~~~~~~~~~~~vv~~~~~~---~~~~iSSt~IR~~ 143 (143)
T cd02039 76 -KILLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKELFLDIEIVEVPRVR---DGKKISSTLIREL 143 (143)
T ss_pred -hccCHHHHHHHHHHHcCCcEEEECCccccCCchhhhHHHHHhCCceEEEeeEecC---CCcEEehHHhhcC
Confidence 110 1135789999999999996655421111111334444444332 5789999999973
No 20
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.82 E-value=1.5e-20 Score=145.11 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=88.5
Q ss_pred eCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceE------EEeecc
Q 030486 27 GGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVV------QTEPIT 100 (176)
Q Consensus 27 ~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v------~~~~l~ 100 (176)
.=+|||+|+||+.++++|.+.++ ...|++... + ....+.++|++|++.++++.+ ...+ .+.++.
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~d-~~~V~v~p~-----~---~~~~s~e~R~~Mi~~a~~~~~-~v~v~~~~~~~v~~~~ 74 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAECD-WVHLFVVSE-----D---ASLFSFDERFALVKKGTKDLD-NVTVHSGSDYIISRAT 74 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHCC-ceEEEEEeC-----C---CCCCCHHHHHHHHHHHhccCC-CEEEEecCCceecccc
Confidence 45899999999999999999984 333334322 1 224699999999999876542 1111 000010
Q ss_pred --CCC--------------CC-----cc-ccCCccEEEEcCCcccChhhhhhhHHhCCC--CceeEEEEeeeecCCCCCe
Q 030486 101 --DPY--------------GP-----SI-VDENLEAIVVSKETLPGGLSVNKKRADRGL--SQLKIEVVDLVSEGSSGDK 156 (176)
Q Consensus 101 --~~~--------------~~-----~~-~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~--~~l~v~~v~~~~~~~~~~~ 156 (176)
+.+ .+ .+ ..+++++|+||+||+||.++.++......+ ..+++.+++.+.. ++..
T Consensus 75 ~~~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~--~g~~ 152 (182)
T smart00764 75 FPSYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKA--NGQP 152 (182)
T ss_pred ChhhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccC--CCcE
Confidence 000 00 01 136999999999999997655443332222 2456677776653 6889
Q ss_pred eehHHHHHHHHhhcccc
Q 030486 157 LSSSTLRKLEAEKAKNE 173 (176)
Q Consensus 157 ISST~IR~~i~~g~~~~ 173 (176)
+|||+||++|.+|++.+
T Consensus 153 iSST~IR~~L~~G~v~~ 169 (182)
T smart00764 153 ISASTVRKLLKEGNLEE 169 (182)
T ss_pred ECHHHHHHHHHcCCHHH
Confidence 99999999999998653
No 21
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.73 E-value=5.1e-18 Score=132.24 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=99.8
Q ss_pred CCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCC-eEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEee
Q 030486 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDR-IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (176)
Q Consensus 20 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~-~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~ 98 (176)
++.++++||+|||+|.||+.++++|.+..+.. ++.+++..+.++ + ...+.+.++|++|++.++++.+. ..++..+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k--~-~~~~a~~~~R~~Ml~la~~~~~~-~~v~~~e 77 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHK--K-KKELASAEHRLAMLELAIEDNPR-FEVSDRE 77 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCC--C-CccCCCHHHHHHHHHHHHhcCCC-cceeHHH
Confidence 45789999999999999999999999987533 444445554432 2 14578999999999999988653 4555544
Q ss_pred ccCCCCCccccCCccEEE--EcCC----cccChhhhhhhHHhCCCCce----eEEEEeeeec-----------------C
Q 030486 99 ITDPYGPSIVDENLEAIV--VSKE----TLPGGLSVNKKRADRGLSQL----KIEVVDLVSE-----------------G 151 (176)
Q Consensus 99 l~~~~~~~~~~~~~~~iv--vG~d----~~fG~~~~~~~~~~~~~~~l----~v~~v~~~~~-----------------~ 151 (176)
+ ...+++++..+++.+- -|+| |..|+|++..+.+|.+++++ .+.+++.... +
T Consensus 78 ~-~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~ 156 (197)
T COG1057 78 I-KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLD 156 (197)
T ss_pred H-HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEcc
Confidence 4 4567776533333332 2333 45788888888899888654 4555443221 0
Q ss_pred CCCCeeehHHHHHHHHhhc
Q 030486 152 SSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 152 ~~~~~ISST~IR~~i~~g~ 170 (176)
..-..||||.||+++..|.
T Consensus 157 ~~~~~ISSt~IR~~~~~~~ 175 (197)
T COG1057 157 LPRLDISSTEIRERIRRGA 175 (197)
T ss_pred CccccCchHHHHHHHhCCC
Confidence 1234799999999998874
No 22
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.72 E-value=8.4e-18 Score=128.97 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=86.5
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcC-CCceEEEeec
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPI 99 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~-~~~~v~~~~l 99 (176)
+++++++|+|||+|.||+.+++++ ... +.+.++++.... .+ +...+.++|++|++.+++++. +...++..++
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~-d~v~~vP~~~~~--~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~ 74 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-SHF-DLVLLVPSIAHA--WG---KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ 74 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-hcC-CEEEEEECCCCc--cc---CCCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence 458899999999999999999985 322 455555555221 12 245799999999999999874 5666665444
Q ss_pred cC--CCCCccccCCccEEE---EcCC--cccChhhhhhhHHhCCCCce----eEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 100 TD--PYGPSIVDENLEAIV---VSKE--TLPGGLSVNKKRADRGLSQL----KIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 100 ~~--~~~~~~~~~~~~~iv---vG~d--~~fG~~~~~~~~~~~~~~~l----~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
.. .-+++++...+..+- -..+ |..|.|.+.++..|.+.+++ .+.+.+ ....||||.||++++.
T Consensus 75 ~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~l~~~~------~~~~ISST~IR~~l~~ 148 (174)
T PRK08887 75 ELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRWTVMACP------EKVPIRSTDIRNALQN 148 (174)
T ss_pred hhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhCeEEEeC------CCCCcCHHHHHHHHHc
Confidence 22 123333311111110 0111 34577777778888877553 222221 2467999999999987
Q ss_pred hc
Q 030486 169 KA 170 (176)
Q Consensus 169 g~ 170 (176)
|.
T Consensus 149 g~ 150 (174)
T PRK08887 149 GK 150 (174)
T ss_pred CC
Confidence 64
No 23
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.72 E-value=1e-16 Score=121.23 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=83.4
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccC
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~ 101 (176)
++++++|+|||+|.||+.++++|++.+ +.++++++.++ .| ..+.+.++|.+|++.+++..+ ...++. ...
T Consensus 2 ~igi~gGsFdP~H~GHl~~~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~~~-~v~v~~--~e~ 71 (159)
T PRK00168 2 KIAIYPGSFDPITNGHLDIIERASRLF-DEVIVAVAINP---SK---KPLFSLEERVELIREATAHLP-NVEVVS--FDG 71 (159)
T ss_pred cEEEEeeecCCCCHHHHHHHHHHHHHC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHcCCC-CEEEec--CCc
Confidence 578999999999999999999999998 56777776653 22 347899999999999888764 333332 211
Q ss_pred CCCCccccCCccEEEEcCCcccChhhhhh---hHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhc
Q 030486 102 PYGPSIVDENLEAIVVSKETLPGGLSVNK---KRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 102 ~~~~~~~~~~~~~ivvG~d~~fG~~~~~~---~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~ 170 (176)
....++...+.++++.|-+.....+...+ ..+.+. +.. ..+-++.. .+-..||||.||++++.|.
T Consensus 72 ~t~~~~~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~-~~~--~~i~~~~~-~~~~~ISST~IR~~i~~g~ 139 (159)
T PRK00168 72 LLVDFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLA-PEI--ETVFLMPS-PEYSFISSSLVKEVARLGG 139 (159)
T ss_pred cHHHHHHHcCCCEEEecCcchhhHHHHHHHHHhCCCCC-CCC--cEEEEeCC-CCcceecHHHHHHHHHcCC
Confidence 10111224577888988443222121111 112111 112 22222221 1225799999999998874
No 24
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.72 E-value=1.2e-17 Score=130.90 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=85.7
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
+++++++|+|||+|+||+.+++.|++... +.+++.++..+.. +. ...+++.++|.+|++.+++..+ ...++..++
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~--k~-~~~~~~~~~R~~m~~~a~~~~~-~~~v~~~E~ 79 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPH--KP-QKPLAPLEHRLAMLELAIADNP-RFSVSDIEL 79 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC--CC-CCCCCCHHHHHHHHHHHhcCCC-ceEEeHHHH
Confidence 45789999999999999999999998764 2344445544432 22 2356899999999999988754 455655554
Q ss_pred cCCCCCccccCC--------cc---EEEEcCCcccChhhhhhhHHhCCCCce----eEEEEeeee---------------
Q 030486 100 TDPYGPSIVDEN--------LE---AIVVSKETLPGGLSVNKKRADRGLSQL----KIEVVDLVS--------------- 149 (176)
Q Consensus 100 ~~~~~~~~~~~~--------~~---~ivvG~d~~fG~~~~~~~~~~~~~~~l----~v~~v~~~~--------------- 149 (176)
.. -+++++... .+ ++++| +|.+.++..|.+++.+ .+.+++...
T Consensus 80 ~~-~~~syT~~tl~~l~~~~p~~~~~fiiG------~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~ 152 (203)
T PRK00071 80 ER-PGPSYTIDTLRELRARYPDVELVFIIG------ADALAQLPRWKRWEEILDLVHFVVVPRPGYPLEALALPALQQLL 152 (203)
T ss_pred hC-CCCCCHHHHHHHHHHHCCCCcEEEEEc------HHHhhhcccccCHHHHHHhCcEEEEeCCCCCccccchhHHHHhh
Confidence 32 245443111 11 44554 4444445555554322 222222110
Q ss_pred --------cCCCCCeeehHHHHHHHHhhc
Q 030486 150 --------EGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 150 --------~~~~~~~ISST~IR~~i~~g~ 170 (176)
.+.....||||.||+++++|+
T Consensus 153 ~~~~~i~~~~~~~~~ISST~IR~~l~~g~ 181 (203)
T PRK00071 153 EAAGAITLLDVPLLAISSTAIRERIKEGR 181 (203)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHcCC
Confidence 001235699999999999875
No 25
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.71 E-value=6.1e-17 Score=119.80 Aligned_cols=132 Identities=23% Similarity=0.283 Sum_probs=83.8
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccC
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~ 101 (176)
++++++|+|||+|.||+.++++|.+.+ +.++++++.++ .| ..+.+.++|.+|++.+++.++ ...+. ...+
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~-D~v~v~v~~np---~K---~~~~s~e~R~~~l~~~~~~~~-~v~v~--~~~~ 71 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLF-DKVYVVVSINP---DK---SNASDLDSRFKNVKNKLKDFK-NVEVL--INEN 71 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhC-CEEEEEeccCC---CC---CCCCCHHHHHHHHHHHHcCCC-CcEEe--cCcC
Confidence 478999999999999999999999998 46777777653 23 246899999999999988774 33222 1101
Q ss_pred CCCCc-cccCCccEEEEcCCcccChhhhhhhHHhCCC----Cce--eEEEEeeeecCCCCCeeehHHHHHHHHhhc
Q 030486 102 PYGPS-IVDENLEAIVVSKETLPGGLSVNKKRADRGL----SQL--KIEVVDLVSEGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 102 ~~~~~-~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~----~~l--~v~~v~~~~~~~~~~~ISST~IR~~i~~g~ 170 (176)
.+-.. ....+.+.+|-|=. ...+...+..+ +.+ ++++|.++.. .++..||||.||+...-|+
T Consensus 72 ~l~v~~~~~~~a~~ivrGlR------~~~DfeyE~~~a~~n~~l~~~ietvfl~~~-~~~~~iSSs~vre~~~~~~ 140 (140)
T PRK13964 72 KLTAEIAKKLGANFLIRSAR------NNIDFQYEIVLAAGNKSLNNDLETILIIPD-YDKIEYSSTLLRHKKFLKK 140 (140)
T ss_pred CcHHHHHHHCCCeEEEEecC------CCccHHHHHHHHHHHHhhcCCCeEEEeecC-CCCCEEeHHHHHHHHHccC
Confidence 10000 11346777775511 11111111111 111 4566666554 3789999999999887653
No 26
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.70 E-value=2.3e-16 Score=118.60 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=80.8
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~ 102 (176)
+++++|+|||+|.||+.++++|.+.+ +.++++++.++ .| ..+.+.++|.+|++.+++..+ ...++ .....
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~~~-~~~v~--~~es~ 70 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF-DEVIVAVAVNP---SK---KPLFSLEERVELIREATKHLP-NVEVD--GFDGL 70 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHHcCCC-CEEec--CCcch
Confidence 37899999999999999999999998 56777676543 22 246889999999999888764 33232 11100
Q ss_pred CCCccccCCccEEEEcCCcccChhhhhhh---HHhCCCCceeEEEEeeeecCCCC-CeeehHHHHHHHHhhc
Q 030486 103 YGPSIVDENLEAIVVSKETLPGGLSVNKK---RADRGLSQLKIEVVDLVSEGSSG-DKLSSSTLRKLEAEKA 170 (176)
Q Consensus 103 ~~~~~~~~~~~~ivvG~d~~fG~~~~~~~---~~~~~~~~l~v~~v~~~~~~~~~-~~ISST~IR~~i~~g~ 170 (176)
...++..++.++++.|.|....-+.+..+ .+.+. .... .+-.+.. .. ..||||.||++++.|.
T Consensus 71 t~~~l~~l~~~~~i~G~d~~~~~e~~~~~~~~~r~~~-~~~~--~i~~~~~--~~~~~iSST~IR~~~~~g~ 137 (153)
T cd02163 71 LVDFARKHGANVIVRGLRAVSDFEYEFQMAGMNRKLA-PEIE--TVFLMAS--PEYSFISSSLVKEIARFGG 137 (153)
T ss_pred HHHHHHHcCCCEEEECCcchhhHHHHHHHHHhCCCCC-CCCc--EEEEeCC--CccceecHHHHHHHHHcCC
Confidence 01112245777889885532222222111 11111 1111 1222221 22 3599999999999874
No 27
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.69 E-value=3.9e-17 Score=124.11 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=81.1
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCCC
Q 030486 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPY 103 (176)
Q Consensus 24 vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~~ 103 (176)
++++|+|||+|+||+.++++|++.+ +.++++++.+... .+. ....+.++|++|++.++...+ ..-+.+.++.|..
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~-D~lii~i~s~~~~-~k~--~~p~~~~eR~~mi~~al~~~~-~~~~~~vP~~d~~ 76 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEV-DELIIGIGSAQES-HTL--ENPFTAGERILMITQSLKEVG-DLTYYIIPIEDIE 76 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCCCC-CCC--CCCCCHHHHHHHHHHHHhcCC-CceEEEEecCCcc
Confidence 6899999999999999999999998 5677766655421 121 223567999999999887764 2223333343332
Q ss_pred CCccc-cC------CccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhcc
Q 030486 104 GPSIV-DE------NLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 104 ~~~~~-~~------~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~~ 171 (176)
....+ .. .+|.++.|..+. ...-.+.+ +.+...|.. +...+|||.||++|.+|+-
T Consensus 77 ~~~~w~~~v~~~~p~~D~vf~~~~~~------~~~f~e~g---~~v~~~p~~----~r~~~S~T~IR~~i~~~~~ 138 (165)
T TIGR01527 77 RNSIWVSYVESMTPPFDVVYSNNPLV------RRLFKEAG---YEVKRPPMF----NRKEYSGTEIRRRMLNGED 138 (165)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCHHH------HHHHHHcC---CEEEECCCc----CCCcccHHHHHHHHHcCCC
Confidence 22111 12 678887763211 11222322 244433332 3458999999999998753
No 28
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.68 E-value=2.9e-17 Score=127.82 Aligned_cols=141 Identities=19% Similarity=0.253 Sum_probs=86.6
Q ss_pred EEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCCC
Q 030486 25 VLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPY 103 (176)
Q Consensus 25 v~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~~ 103 (176)
+++|+|||+|.||+.+++.|++... +.+.++++..+.. |+. ....+.++|++|++.+++.. +...++..++ +.-
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~--k~~-~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E~-~~~ 75 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPH--KKT-YEAASSHHRLAMLKLAIEDN-PKFEVDDFEI-KRG 75 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC--CCC-CCCCCHHHHHHHHHHHHhcC-CCEEEeHHHH-hCC
Confidence 4799999999999999999999875 3455556665533 221 23479999999999998875 4555655454 334
Q ss_pred CCccccCCccEE---EEcCC--cccChhhhhhhHHhCCCCce----eEEEEeeeec----------------------CC
Q 030486 104 GPSIVDENLEAI---VVSKE--TLPGGLSVNKKRADRGLSQL----KIEVVDLVSE----------------------GS 152 (176)
Q Consensus 104 ~~~~~~~~~~~i---vvG~d--~~fG~~~~~~~~~~~~~~~l----~v~~v~~~~~----------------------~~ 152 (176)
+++++...++++ .-+.+ |..|+|.+..+..|.+++.+ .+.+++.... +.
T Consensus 76 ~~syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (193)
T TIGR00482 76 GPSYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHN 155 (193)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcC
Confidence 555442111111 00111 33566666667677665433 3333332110 01
Q ss_pred CCCeeehHHHHHHHHhhc
Q 030486 153 SGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 153 ~~~~ISST~IR~~i~~g~ 170 (176)
....||||.||+++.+|.
T Consensus 156 ~~~~iSST~IR~~l~~g~ 173 (193)
T TIGR00482 156 PRVPISSTEIRQRIRQGK 173 (193)
T ss_pred CccccCHHHHHHHHHcCC
Confidence 235699999999999874
No 29
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.68 E-value=3.7e-16 Score=117.70 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=79.3
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~ 102 (176)
+++++|+|||+|.||+.++++|.+.+ +.++++++.++ .| ....+.++|++|++.++... |...++. .. .
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~-d~v~~~~~~~p---~k---~~~~~~~~R~~m~~~a~~~~-~~~~v~~--~e-~ 69 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF-DEVIVAVAKNP---SK---KPLFSLEERVELIKDATKHL-PNVRVDV--FD-G 69 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC-CEEEEEEcCCC---CC---CCCcCHHHHHHHHHHHHhhC-CCeEEcC--cc-c
Confidence 47899999999999999999999998 56776676432 22 24679999999999998775 3333332 21 1
Q ss_pred CC-CccccCCccEEEEcCCcccChhhhhhhHHh-CCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhc
Q 030486 103 YG-PSIVDENLEAIVVSKETLPGGLSVNKKRAD-RGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 103 ~~-~~~~~~~~~~ivvG~d~~fG~~~~~~~~~~-~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~ 170 (176)
+. .++..++.+.++.|.|....-..+.+.... +.... .+..+-.+.. ..-..||||.||++++.|+
T Consensus 70 yt~dt~~~l~~~~~i~G~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~-~~~~~iSST~IR~~i~~g~ 137 (155)
T TIGR01510 70 LLVDYAKELGATFIVRGLRAATDFEYELQMALMNKHLAP-EIETVFLMAS-PEYAFVSSSLVKEIASFGG 137 (155)
T ss_pred hHHHHHHHcCCCEEEecCcchhhHHHHHHHHhhCccccc-CCcEEEEeCC-cchhhccHHHHHHHHHcCC
Confidence 10 112244677788884422221111111000 00111 1111222221 0123799999999999885
No 30
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.68 E-value=2.9e-16 Score=132.21 Aligned_cols=130 Identities=20% Similarity=0.182 Sum_probs=86.6
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccC
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~ 101 (176)
..+++.|+||++|.||+.+|++|++.++ .+++++..+..+...+. .++++.+||.++++++ . +++.+.+..
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~qAk~~g~-~Livgv~~d~~i~~~K~-~pi~~~eeR~~~l~~~----~---~VD~Vv~~~ 82 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQARALGD-ELFVGCHSDEEIMRNKG-PPVMHQEERYEALRAC----K---WVDEVVEGY 82 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHHHHHhCC-EEEEEeCCHHHHhhcCC-CCCCCHHHHHHHHHhc----C---CccEEEECC
Confidence 5789999999999999999999999984 58888888765533222 3599999999999876 2 111111111
Q ss_pred CCCC---ccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 102 PYGP---SIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 102 ~~~~---~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
++.. .+..++++++++|+||+||.+...........- .+..++ . ...+|||.|.++|..
T Consensus 83 p~~~~~~fI~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G--~~~~v~--r----t~g~STt~ii~ril~ 144 (353)
T PTZ00308 83 PYTTRLEDLERLECDFVVHGDDISVDLNGRNSYQEIIDAG--KFKVVK--R----TEGISTTDLVGRMLL 144 (353)
T ss_pred CCCchHHHHHHhCCCEEEECCCCCCCCCccchHHHHHhCC--eEEEEe--c----CCCCCHHHHHHHHHH
Confidence 2221 123469999999999999965433222211110 123333 2 234999999999974
No 31
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.67 E-value=1.1e-15 Score=118.01 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=82.1
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCC-CceEEEeeccCC
Q 030486 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP-ELVVQTEPITDP 102 (176)
Q Consensus 24 vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~-~~~v~~~~l~~~ 102 (176)
++++|+|||+|.||+.++++|++.++ .++++++..+..+.++ ...+.++|.+|++.++..... ..-+.+..+.|.
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~-~vii~i~s~~~~~~~~---~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAK-KVIILIGSARTARNIK---NPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCC-eEEEEeCCCCCCCCCC---CCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 68999999999999999999999985 6777776654333332 347999999999998876421 113444556554
Q ss_pred -CCCccc------------cCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhh
Q 030486 103 -YGPSIV------------DENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEK 169 (176)
Q Consensus 103 -~~~~~~------------~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g 169 (176)
+....+ ..+.+.+++|+|.-...- ....++++.+..++ ....||||.||+++..|
T Consensus 78 ~~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~~~~------~~~lfpe~~~~~~p------~~~~iSsT~IR~~i~~~ 145 (181)
T cd02168 78 LYSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDASSY------YLRSFPQWDYLEVP------NYPDLNATDIRRAYFEG 145 (181)
T ss_pred CCChHHHHHHHHHhChHhhCCCCcEEEeCCccCCCcc------ceeecCCcCeecCc------cccccCHHHHHHHHHhc
Confidence 223222 124466777766532211 11112233333222 12479999999999984
No 32
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.67 E-value=4.2e-16 Score=118.40 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=81.3
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcC-CCceEEEeeccC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPITD 101 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~-~~~~v~~~~l~~ 101 (176)
+++++|+|||+|.||+.++++|++.+ +.++++++.+.....+ ....+.++|++|++.++...+ +...+.+..+.|
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~-d~l~v~v~s~~~~~~~---~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV-DELIIGIGSAQESHTL---ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 37999999999999999999999998 5677767554322111 223678999999998887753 122344445544
Q ss_pred CCCCccc-c------CCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhh
Q 030486 102 PYGPSIV-D------ENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEK 169 (176)
Q Consensus 102 ~~~~~~~-~------~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g 169 (176)
.+....+ . ..++.++.|.+|.- .-+.++++.++.... .+...||||.||+++..|
T Consensus 77 ~~~~~~w~~~v~~~vp~~div~~g~~~~~-----------~~f~~~g~~v~~~p~--~~~~~~s~t~iR~~~~~~ 138 (163)
T cd02166 77 IERNSLWVSYVESLTPPFDVVYSGNPLVA-----------RLFKEAGYEVRRPPM--FNREEYSGTEIRRLMLGG 138 (163)
T ss_pred CCchHHHHHHHHHHCCCCCEEEECchHHH-----------HhhhhcCCeEecCCc--ccCCCCCHHHHHHHHHcC
Confidence 4322222 1 25677777754211 111233334333322 134579999999999765
No 33
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.67 E-value=3.1e-16 Score=126.04 Aligned_cols=82 Identities=28% Similarity=0.443 Sum_probs=58.5
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcC-C--CceEEE
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-P--ELVVQT 96 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~-~--~~~v~~ 96 (176)
.++++++|+|||+|.||+.++++|.+... +.++++.+..+.. | ..+.+.++|++|++.+++..+ + ...++.
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~--K---~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~ 96 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQ--K---ADVSAAEHRLAMTRAAAASLVLPGVTVRVAT 96 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCC--C---CCCCCHHHHHHHHHHHHHhccCCCceEEEeH
Confidence 35789999999999999999999999865 3455555655432 2 335799999999999988753 2 334554
Q ss_pred eeccCCCCCccc
Q 030486 97 EPITDPYGPSIV 108 (176)
Q Consensus 97 ~~l~~~~~~~~~ 108 (176)
.++ +.-+++++
T Consensus 97 ~Ei-~~~g~syT 107 (243)
T PRK06973 97 DEI-EHAGPTYT 107 (243)
T ss_pred hhh-hCCCCCcH
Confidence 444 23466654
No 34
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.65 E-value=2e-15 Score=113.18 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=86.7
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeecc
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~ 100 (176)
..|++.|+||++|.||..+|++|++++. +.++|+++.|+.....+.. ++++.+||.++++++ ..++ + +.+.
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~-pi~~~~eR~~~l~~~-~~Vd-~-----Vi~~ 74 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP-PVMTEEERYEAVRHC-KWVD-E-----VVEG 74 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC-CcCCHHHHHHHHHhc-CCCC-e-----EEEC
Confidence 4689999999999999999999999972 3689999988755322223 799999999999876 3222 1 1122
Q ss_pred CCCCCc---cccCCccEEEEcCCcccChhhh---hhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhc
Q 030486 101 DPYGPS---IVDENLEAIVVSKETLPGGLSV---NKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 101 ~~~~~~---~~~~~~~~ivvG~d~~fG~~~~---~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~ 170 (176)
.++... +...+++.++.|.||..+.... ..... .+ .+..++ . ...+|||.|+++|....
T Consensus 75 ~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~~~~~~-~g----~~~~~~--~----~~~~Stt~ii~rI~~~~ 139 (150)
T cd02174 75 APYVTTPEFLDKYKCDYVAHGDDIYLDADGEDCYQEVKD-AG----RFKEVK--R----TEGVSTTDLIGRILLDY 139 (150)
T ss_pred CCCCChHHHHHHhCCCEEEECCCCCCCCCchhHHHHHHh-CC----EEEEeC--C----CCCCCHHHHHHHHHHhH
Confidence 222211 3356899999999998653211 11111 11 122222 2 35599999999997643
No 35
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.63 E-value=3e-15 Score=125.85 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=91.6
Q ss_pred CCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 20 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
++++++++|+|||+|+||+.++++|++.+ +.++|+++.......++ ...+.++|++|++.++..+.. ..+.+..+
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~-d~l~v~i~s~~~~~~~~---~~~~~~~R~~mi~~~~~~~~~-~r~~~~pi 79 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRA-KKVIVLIGSADLARSIK---NPFSFEERAQMIRAALAGIDL-ARVTIRPL 79 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEEccCCCCCcCC---CCCCHHHHHHHHHHHhhcCCC-ceEEEEEC
Confidence 57899999999999999999999999998 57888886543222232 237999999999999886543 24555566
Q ss_pred cCC-CCCccc------------cCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHH
Q 030486 100 TDP-YGPSIV------------DENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLE 166 (176)
Q Consensus 100 ~~~-~~~~~~------------~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i 166 (176)
.|. +.+..+ ..+++.+++|+|.-....-+ ..+++.++..++ +...+|||.||+++
T Consensus 80 ~d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~~~~~~------~~f~~~~~~~~~------~~~~~s~T~iR~~~ 147 (340)
T PRK05379 80 RDSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDASSYYL------RSFPQWELVDVP------NTEDLSATEIRDAY 147 (340)
T ss_pred CCCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCCChHHH------HhccccccccCC------cccccCccHHHHHH
Confidence 665 333322 14567888887763332211 122333333111 35679999999999
Q ss_pred Hhhcc
Q 030486 167 AEKAK 171 (176)
Q Consensus 167 ~~g~~ 171 (176)
..|+.
T Consensus 148 ~~~~~ 152 (340)
T PRK05379 148 FEGRI 152 (340)
T ss_pred HcCCC
Confidence 98775
No 36
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.62 E-value=9.3e-15 Score=110.48 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=82.0
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~~ 102 (176)
+++++|+|||+|+||+.++++|++.+ +.++++++..+..+.+ ....|.++|++|++.++.+.. ...+...++.|.
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~-d~v~vi~~~~~~~~~~---~~~~~~~~R~~mi~~a~~~~~-~~~v~~~~~~d~ 75 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV-DELLIIVGSDDTRDDA---RTGLPLEKRLRWLREIFPDQE-NIVVHTLNEPDI 75 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCCC-CEEEEeCCCCCC
Confidence 36899999999999999999999998 5777778776533222 335799999999999987653 344444444332
Q ss_pred C-CCccc-----------c----CCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHH
Q 030486 103 Y-GPSIV-----------D----ENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLE 166 (176)
Q Consensus 103 ~-~~~~~-----------~----~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i 166 (176)
. .+..+ . ..++.++.|+++ |....+. ..+. .+.+..++... ....||+|.||+..
T Consensus 76 ~~~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~--~~~~~~~-~~~~---~~~~~~v~~~r---~~~~iSaT~IR~~p 146 (158)
T cd02167 76 PEYPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEY--EAAFELV-LAYL---GAQVVLVDPDR---TDISVSATQIRENP 146 (158)
T ss_pred CCCchhHHHHHHHHHHHHhhhcCCCCCEEEEccCc--chhhhhH-hhcC---CCeEEEecccc---ccCCcCHHHHHhCH
Confidence 1 11111 1 156777777664 3221110 1122 22344333322 35689999999876
Q ss_pred H
Q 030486 167 A 167 (176)
Q Consensus 167 ~ 167 (176)
.
T Consensus 147 ~ 147 (158)
T cd02167 147 F 147 (158)
T ss_pred H
Confidence 4
No 37
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.62 E-value=8e-16 Score=119.52 Aligned_cols=135 Identities=21% Similarity=0.239 Sum_probs=82.5
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~ 101 (176)
+++++|+|||+|.||+.+++.|.+.+. +.+.++++..+.. |+ ....+.++|.+|++.+++.. +...++..++.
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~--k~--~~~~~~~~R~~m~~~~~~~~-~~i~v~~~e~~- 74 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPH--KP--PKPASFEHRLEMLKLAIEDN-PKFEVSDIEIK- 74 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC--CC--CCCCCHHHHHHHHHHHHcCC-CCEEEeHHHHh-
Confidence 478999999999999999999999874 3455556554432 22 34679999999999998754 34444433332
Q ss_pred CCCCcccc----------CCcc-EEEEcCCcccChhhhhhhHHhCCCCce----eEEEEeeee-----------------
Q 030486 102 PYGPSIVD----------ENLE-AIVVSKETLPGGLSVNKKRADRGLSQL----KIEVVDLVS----------------- 149 (176)
Q Consensus 102 ~~~~~~~~----------~~~~-~ivvG~d~~fG~~~~~~~~~~~~~~~l----~v~~v~~~~----------------- 149 (176)
.-+++++. .+.+ ++++ |+|.+.++..|.+.+.+ .+.+++...
T Consensus 75 ~~~~~~t~~tl~~l~~~~p~~~~~~li------G~D~l~~~~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~ 148 (192)
T cd02165 75 RDGPSYTIDTLEELRERYPNAELYFII------GSDNLIRLPKWYDWEELLSLVHLVVAPRPGYPIEDASLEKLLLPGGR 148 (192)
T ss_pred CCCCCCHHHHHHHHHHhccCCCEEEEE------cHHHhhhcccccCHHHHHHhCcEEEEeCCCCCcccchhhhhccCCCc
Confidence 22333321 1112 3444 44444445555555332 333332211
Q ss_pred ---cCCCCCeeehHHHHHHHHhh
Q 030486 150 ---EGSSGDKLSSSTLRKLEAEK 169 (176)
Q Consensus 150 ---~~~~~~~ISST~IR~~i~~g 169 (176)
.......||||.||+++..|
T Consensus 149 ~~~~~~~~~~iSST~IR~~~~~g 171 (192)
T cd02165 149 IILLDNPLLNISSTEIRERLKNG 171 (192)
T ss_pred EEEecCCccccCHHHHHHHHHcC
Confidence 00123569999999999987
No 38
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.61 E-value=8.2e-16 Score=129.33 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=88.9
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeecc
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~ 100 (176)
++++++|||||+|.||+.+++.|.+... +.+.++++..+.. |+ .....+.++|++|++.+++.. |...++..++.
T Consensus 2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~--K~-~~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E~~ 77 (342)
T PRK07152 2 KIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPF--KK-KQKASNGEHRLNMLKLALKNL-PKMEVSDFEIK 77 (342)
T ss_pred eEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCC--CC-CCCCCCHHHHHHHHHHHHhhC-CCeEEeHHHHh
Confidence 4789999999999999999999998754 3465556665433 22 233456699999999998886 45666655553
Q ss_pred CCCCCccccCCccEE---EEcCC--cccChhhhhhhHHhCCCCce----eEEEEeeeec--------------CCCCCee
Q 030486 101 DPYGPSIVDENLEAI---VVSKE--TLPGGLSVNKKRADRGLSQL----KIEVVDLVSE--------------GSSGDKL 157 (176)
Q Consensus 101 ~~~~~~~~~~~~~~i---vvG~d--~~fG~~~~~~~~~~~~~~~l----~v~~v~~~~~--------------~~~~~~I 157 (176)
.-+++++...++.+ .-+.+ |..|+|.+.++..|.+++.+ .+.+++.... +.....|
T Consensus 78 -~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~i 156 (342)
T PRK07152 78 -RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNI 156 (342)
T ss_pred -CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCcccc
Confidence 33555442111110 00111 22455555556666665432 4444432110 1123569
Q ss_pred ehHHHHHHHHhhc
Q 030486 158 SSSTLRKLEAEKA 170 (176)
Q Consensus 158 SST~IR~~i~~g~ 170 (176)
|||.||+++..|.
T Consensus 157 SST~IR~~~~~~~ 169 (342)
T PRK07152 157 SSTKIRKGNLLGK 169 (342)
T ss_pred CHHHHHHHHHcCC
Confidence 9999999999876
No 39
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.61 E-value=1.5e-15 Score=112.64 Aligned_cols=135 Identities=22% Similarity=0.288 Sum_probs=88.2
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeecc
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~ 100 (176)
.+++++.|+|||+++||+.+|++|.... +.++|+|..++ .| +++++++||.+|+++.+..++ +..+. ...
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F-d~viVaV~~np---~K---~plFsleER~~l~~~~~~~l~-nV~V~--~f~ 71 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF-DEVIVAVAINP---SK---KPLFSLEERVELIREATKHLP-NVEVV--GFS 71 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc-cEEEEEEEeCC---Cc---CCCcCHHHHHHHHHHHhcCCC-ceEEE--ecc
Confidence 5689999999999999999999999998 47888887764 23 568999999999999988875 33332 111
Q ss_pred CCCCCc-cccCCccEEEEcCCcccChhhhhhhHHhCCC----Cce--eEEEEeeeecCCCCCeeehHHHHHHHHh-hccc
Q 030486 101 DPYGPS-IVDENLEAIVVSKETLPGGLSVNKKRADRGL----SQL--KIEVVDLVSEGSSGDKLSSSTLRKLEAE-KAKN 172 (176)
Q Consensus 101 ~~~~~~-~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~----~~l--~v~~v~~~~~~~~~~~ISST~IR~~i~~-g~~~ 172 (176)
+ +-.. ....++..|| .|-+...++..+..+ +.+ +++++=+... .+...||||.+|+...- |+++
T Consensus 72 ~-Llvd~ak~~~a~~iv------RGLR~~sDfeYE~qma~~N~~L~~eveTvFl~~s-~~~~~iSSs~Vreia~~ggdvs 143 (159)
T COG0669 72 G-LLVDYAKKLGATVLV------RGLRAVSDFEYELQMAHMNRKLAPEVETVFLMPS-PEYSFISSSLVREIAAFGGDVS 143 (159)
T ss_pred c-HHHHHHHHcCCCEEE------EeccccchHHHHHHHHHHHHhhcccccEEEecCC-cceehhhHHHHHHHHHhCCCch
Confidence 1 1001 1245778887 343333333332211 111 3444444332 25678999999998754 5565
Q ss_pred c
Q 030486 173 E 173 (176)
Q Consensus 173 ~ 173 (176)
+
T Consensus 144 ~ 144 (159)
T COG0669 144 E 144 (159)
T ss_pred h
Confidence 4
No 40
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.61 E-value=9.2e-15 Score=109.81 Aligned_cols=130 Identities=27% Similarity=0.375 Sum_probs=85.9
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCC-cCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeecc
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~-k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~ 100 (176)
+++++.|+||++|.||..+|++|++++ +.++|+++.|+.... |....++++.++|.+++++ +..++ .+ .+.
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~A~~lg-d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~-~~~Vd---~V---~v~ 74 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEKARELG-DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA-CRYVD---EV---VIG 74 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHHHHHcC-CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHh-cCCCC---EE---EEC
Confidence 578999999999999999999999987 478999988864432 3223579999999999965 34332 12 122
Q ss_pred CCCCCc---cccCCccEEEEcCCcccC----hhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhh
Q 030486 101 DPYGPS---IVDENLEAIVVSKETLPG----GLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEK 169 (176)
Q Consensus 101 ~~~~~~---~~~~~~~~ivvG~d~~fG----~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g 169 (176)
.+++.. +...+++.++.|.||... ....-..-++.+. +..++ ....+|||.|.++|.+.
T Consensus 75 ~~~~~~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~----~~~v~------~~~~~Sts~Ii~rI~~~ 140 (152)
T cd02173 75 APYVITKELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGI----FKEID------SGSDLTTRDIVNRIIKN 140 (152)
T ss_pred CCCcchHHHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCe----EEEec------CCCCCCHHHHHHHHHHh
Confidence 232221 335789999999998642 1111111222222 22222 24578999999999754
No 41
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.59 E-value=4.7e-15 Score=113.75 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=77.9
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCC-CceEEEeeccC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP-ELVVQTEPITD 101 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~-~~~v~~~~l~~ 101 (176)
.++++|+|||+|+||+.++++|++.+ +.++++++.......+ ....+.++|.+|++.++...+- ...+.+..+.|
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~-d~v~v~i~s~~~~~~~---~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV-DELIIGIGSAQESHTL---KNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC-CEEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 58999999999999999999999977 4666666543211111 2236889999999998865432 11233333433
Q ss_pred CCCCccc-------cCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhc
Q 030486 102 PYGPSIV-------DENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 102 ~~~~~~~-------~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~ 170 (176)
......+ ...++.++.|..+ .. .-+.+.++.++.... .+...+|||.||+++.+|+
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~~y------~~-----~~f~~~g~~v~~~p~--~~~~~iSsT~IR~~i~~g~ 140 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGNPL------VA-----RLFREAGYEVRQPPM--FNREEYSGTEIRRRMIEGD 140 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECChH------HH-----HhchhhCCeEecCCc--cccCCCCHHHHHHHHHcCC
Confidence 3222211 1255666666421 10 112233333333221 1356799999999998875
No 42
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.58 E-value=2.1e-14 Score=105.37 Aligned_cols=132 Identities=23% Similarity=0.341 Sum_probs=83.5
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCC-cCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~-k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~ 101 (176)
.|++.|+||-+|.||...|++|+++++ .++|++..++.... ++ ..++.+.+||.++++++ . +++.+.+..
T Consensus 3 rV~~~GtFDilH~GHi~~L~~Ak~lGd-~liVv~a~de~~~~~~k-~~pi~~~~qR~evl~s~----r---yVD~vi~~~ 73 (140)
T COG0615 3 RVWADGTFDILHPGHIEFLRQAKKLGD-ELIVVVARDETVIKRKK-RKPIMPEEQRAEVLESL----R---YVDEVILGA 73 (140)
T ss_pred EEEEeeEEEEechhHHHHHHHHHHhCC-eEEEEEeccHHHHHhcC-CCCCCCHHHHHHHHHcC----c---chheeeeCC
Confidence 489999999999999999999999994 45444444443332 22 46799999999999875 1 122122222
Q ss_pred CCCC---ccccCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHH
Q 030486 102 PYGP---SIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEA 167 (176)
Q Consensus 102 ~~~~---~~~~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~ 167 (176)
++.- .+...++|.++.|+|+.|..+.+...-...|. ...+...+-+. ...-+|||.|.+++.
T Consensus 74 p~~~~~~~i~~~k~Div~lG~D~~~d~~~l~~~~~k~G~-~~~v~R~~g~~---~~~~~st~~i~~~i~ 138 (140)
T COG0615 74 PWDIKFEDIEEYKPDIVVLGDDQKFDEDDLKYELVKRGL-FVEVKRTEGVS---TCELISTSDIIKRIL 138 (140)
T ss_pred ccccChHHHHHhCCCEEEECCCCcCChHHHHHHHHHcCC-eeEEEeccCcc---cCcccchHHHHHHHh
Confidence 2222 12346899999999999654444333333232 11222222222 245689999998875
No 43
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.57 E-value=1.6e-15 Score=112.16 Aligned_cols=62 Identities=29% Similarity=0.470 Sum_probs=43.2
Q ss_pred EEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEE-ccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcC
Q 030486 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK 89 (176)
Q Consensus 25 v~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~v-t~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~ 89 (176)
+++|+|||+|.||+.++++|++.++...++++ +..+.... ...+.|.++|++|++.++....
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~---~~~~~~~~~R~~ml~~~~~~~~ 63 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD---KKPIFSFEERLEMLRAAFKDDP 63 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST---TSSSSTHHHHHHHHHHHHTTCT
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc---ccccCcHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999865334444 44332221 1257899999999999987754
No 44
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.55 E-value=2.9e-14 Score=110.68 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=61.4
Q ss_pred CCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 20 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
+|+.++++|.|+|+|+||+.+|+.|++.|+ .++|++++...-...++| +|..||..|+...+.+.. ..-+.++++
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~d-evII~IGSA~~s~t~~NP---FTa~ER~~MI~~aL~e~~-~~rv~~ipi 77 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQSR-YVILALGSAQMERNIKNP---FLAIEREQMILSNFSLDE-QKRIRFVHV 77 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhCC-EEEEEEccCCCCCCCCCC---CCHHHHHHHHHHhcchhh-cceEEEEec
Confidence 578999999999999999999999999985 788888775432233333 789999999999875432 123444556
Q ss_pred cCCCCCccc
Q 030486 100 TDPYGPSIV 108 (176)
Q Consensus 100 ~~~~~~~~~ 108 (176)
.|.+..+.+
T Consensus 78 ~D~~~~~~W 86 (196)
T PRK13793 78 VDVYNDEKW 86 (196)
T ss_pred CCccchhHH
Confidence 565544443
No 45
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.52 E-value=1.9e-13 Score=117.12 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=83.0
Q ss_pred CCCCCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCC----CCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 030486 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP----MLTNKQFAELIQPVDERMRNVEAYIKSIKPEL 92 (176)
Q Consensus 17 ~~~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~----~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~ 92 (176)
|..++++++++|+|||+|+||+.+|++|.+.+++..+++.++++ ++. +.......|.++|.+|++..+...+ .
T Consensus 48 ~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~-~~~~~~~~s~~~R~~~l~~~~~~~~-~- 124 (399)
T PRK08099 48 PRQMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFE-DSAMSQQPTVSDRLRWLLQTFKYQK-N- 124 (399)
T ss_pred hhhcCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcc-cccccCCCCHHHHHHHHHHHhCCCC-C-
Confidence 34467899999999999999999999999998633344445542 121 1123456899999999999887654 2
Q ss_pred eEEEeeccCCCCCcc------c-----------cCCccEEEEcCCcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCC
Q 030486 93 VVQTEPITDPYGPSI------V-----------DENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGD 155 (176)
Q Consensus 93 ~v~~~~l~~~~~~~~------~-----------~~~~~~ivvG~d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~ 155 (176)
+++..+.+.-.|.+ + ..+++.+++|+++ |... ..+. ..++...++... ...
T Consensus 125 -v~v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~--d~~~---~~~~---~~~~~~~vd~~r---~~~ 192 (399)
T PRK08099 125 -IKIHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQ--DAPQ---YEEH---LGIETVLVDPKR---TFM 192 (399)
T ss_pred -EEEEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCC--ChHH---HHHh---cCCceeeecccc---ccC
Confidence 33332322111111 0 1256788888764 4222 2111 123334344322 356
Q ss_pred eeehHHHHHHHH
Q 030486 156 KLSSSTLRKLEA 167 (176)
Q Consensus 156 ~ISST~IR~~i~ 167 (176)
.||+|.||+...
T Consensus 193 ~iSaT~IR~~p~ 204 (399)
T PRK08099 193 NISGTQIRENPF 204 (399)
T ss_pred CcCHHHHhhCHH
Confidence 899999998654
No 46
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.51 E-value=4.9e-14 Score=90.95 Aligned_cols=61 Identities=30% Similarity=0.448 Sum_probs=49.2
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHH
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~ 85 (176)
+++++|+|||+|.||+.++++|.+.++ .+++++++++...+.+. .++++.++|.+|++.+.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~-~~vv~i~~~~~~~~~~~-~~~~~~~~R~~~~~~~~ 61 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFD-ELIVGVGSDQFVNPLKG-EPVFSLEERLEMLKALK 61 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCC-EEEEEECchHhccccCC-CCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999986 67777877544433322 37899999999998864
No 47
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=99.47 E-value=7.1e-14 Score=112.07 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=52.8
Q ss_pred CCCCCCCCeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCe-EEEEccCCCC-CCcCcCCCCCCHHHHHHHHHHHHHhcCCC
Q 030486 15 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRI-VVGVCDGPML-TNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (176)
Q Consensus 15 ~~~~~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~-~v~vt~~~~~-~~k~~~~~l~~~~eR~~~l~~~~~~~~~~ 91 (176)
+.+.+..-..+++|+|||+|.||+.+++.|.+... +.+ +|.+-+.+.- ..++ ..+.+.++|++|++.+++..+ .
T Consensus 16 ~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k--~~~~~~~~Rl~Ml~lai~~~~-~ 92 (236)
T PLN02945 16 STGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK--KGLASAEHRIQMCQLACEDSD-F 92 (236)
T ss_pred CccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc--CCCCCHHHHHHHHHHHhcCCC-C
Confidence 34444455678999999999999999999998653 222 2222222211 1111 245799999999998887753 4
Q ss_pred ceEEEeec
Q 030486 92 LVVQTEPI 99 (176)
Q Consensus 92 ~~v~~~~l 99 (176)
..++.+++
T Consensus 93 ~~V~~~E~ 100 (236)
T PLN02945 93 IMVDPWEA 100 (236)
T ss_pred eEecHHHh
Confidence 45555555
No 48
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.46 E-value=1.7e-13 Score=119.43 Aligned_cols=130 Identities=22% Similarity=0.343 Sum_probs=84.0
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCC-CcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~-~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
.+++++.|+||++|.||+.+|++|++.++ .++|++++|+... .|....++++.++|.++++++ ..++ .+ ++.
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~~-~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~-~~vd---~v--~~~ 412 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLGD-RLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAAL-EAVD---WV--VPF 412 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhCC-eeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhc-CcCC---EE--EeC
Confidence 36889999999999999999999999874 6889999986443 122235699999999998664 2121 11 111
Q ss_pred cCC-CCCccccCCccEEEEcCCcccChhhh-hhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHH
Q 030486 100 TDP-YGPSIVDENLEAIVVSKETLPGGLSV-NKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEA 167 (176)
Q Consensus 100 ~~~-~~~~~~~~~~~~ivvG~d~~fG~~~~-~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~ 167 (176)
... ....+....++.+++|.||.+..... ....++++ .+..++. ...+|||.|+++|.
T Consensus 413 ~~~~~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~----~~~~~~~------~~~~st~~i~~ri~ 472 (473)
T PRK11316 413 EEDTPQRLIAEILPDLLVKGGDYKPEEIAGSKEVWANGG----EVKVLNF------EDGCSTTNIIKKIR 472 (473)
T ss_pred CCCCHHHHHHHhCCCEEEECCCCCCCccccHHHHHHcCC----EEEEEcC------CCCcCHHHHHHHHh
Confidence 100 00012235789999999998763211 11222221 2333332 34699999999985
No 49
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=110.06 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=86.5
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCC-CcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~-~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
.++|++.|+||++|.||..+|++|++++ +.++|+|..|.... .|....++++.+||.+++.++ ..++ .+ .+
T Consensus 192 ~kiv~~~G~FDl~H~GHi~~L~~A~~lg-d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~-~~Vd---~V---vi 263 (353)
T PTZ00308 192 DRIVYVDGSFDLFHIGHIRVLQKARELG-DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSC-RYVD---EV---VI 263 (353)
T ss_pred CeEEEECCccCCCCHHHHHHHHHHHHhC-CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhh-CCCC---eE---EE
Confidence 3679999999999999999999999987 47999998876443 333345799999999999643 3332 12 12
Q ss_pred cCCCCCc---cccCCccEEEEcCCccc--Ch--hhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhc
Q 030486 100 TDPYGPS---IVDENLEAIVVSKETLP--GG--LSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 100 ~~~~~~~---~~~~~~~~ivvG~d~~f--G~--~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~ 170 (176)
..+++.+ +...+++++|.|.|+.. .. ...-...+.++ .+..++ ....+|+|.|.++|....
T Consensus 264 ~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G----~~~~i~------~~~~~sTt~ii~RI~~~r 331 (353)
T PTZ00308 264 GAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMG----IFKEVD------SGCDLTTDSIVDRVVKNR 331 (353)
T ss_pred cCCCCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCc----eEEEeC------CCCCccHHHHHHHHHHhH
Confidence 1222222 33579999999999863 11 11001112222 122233 246789999999997654
No 50
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.43 E-value=1.7e-12 Score=111.00 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=85.0
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCC-CcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~-~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
...|++.|+||.+|.||..+|++|++++ +.++|+++.|+.+. .|. .++++.+||.++++++ ..++ + + .+
T Consensus 53 ~~rV~~~G~FDllH~GH~~~L~qAk~lG-d~LIVGV~SDe~i~~~Kg--~PV~~~eER~~~v~al-k~VD-~--V---v~ 122 (418)
T PLN02406 53 PVRVYMDGCFDMMHYGHANALRQARALG-DELVVGVVSDEEIIANKG--PPVTPMHERMIMVSGV-KWVD-E--V---IP 122 (418)
T ss_pred ceEEEEcCeeCCCCHHHHHHHHHHHHhC-CEEEEEEecChhhhccCC--CCcCCHHHHHHHHHhc-CCCc-e--E---Ee
Confidence 4679999999999999999999999998 47899999886543 343 4799999999999884 3322 1 1 11
Q ss_pred cCCCCCc-------cccCCccEEEEcCCcccCh---hhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHh
Q 030486 100 TDPYGPS-------IVDENLEAIVVSKETLPGG---LSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAE 168 (176)
Q Consensus 100 ~~~~~~~-------~~~~~~~~ivvG~d~~fG~---~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~ 168 (176)
..++..+ +...++|++|.|.||.... +.-. ..+.++ .+..++ . ...+|+|.|..+|..
T Consensus 123 ~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g~d~y~-~~k~~G----r~~~i~--r----t~GvSTTdIv~Ril~ 190 (418)
T PLN02406 123 DAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYA-LAKKAG----RYKQIK--R----TEGVSSTDIVGRMLL 190 (418)
T ss_pred CCccccchHHHHHHHHHhCCCEEEECCCccccCCchHHHH-HHHhCC----EEEEEe--c----CCCCCHHHHHHHHHH
Confidence 1222111 1257999999999987432 2111 112222 223333 2 345899999999864
No 51
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.40 E-value=3.8e-13 Score=107.15 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=48.3
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHHhcC-C-e-EE--EEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEee
Q 030486 24 VVLGGTFDRLHDGHRLFLKASAELARD-R-I-VV--GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (176)
Q Consensus 24 vv~~G~FDgvH~GH~~ll~~a~~~~~~-~-~-~v--~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~ 98 (176)
.+++|+|||+|.||+.+++.|.+..+. . + ++ .+........| ..+.+.++|++|++.++++. +...++..+
T Consensus 3 ~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~-~~~~v~~~E 78 (225)
T cd09286 3 LLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK---KGLASAKHRVAMCRLAVQSS-DWIRVDDWE 78 (225)
T ss_pred EEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC---CCCCCHHHHHHHHHHHHccC-CCEEEEehh
Confidence 579999999999999999999987642 2 1 21 11111111112 34678999999999988875 345555544
Q ss_pred c
Q 030486 99 I 99 (176)
Q Consensus 99 l 99 (176)
+
T Consensus 79 ~ 79 (225)
T cd09286 79 S 79 (225)
T ss_pred c
Confidence 4
No 52
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.37 E-value=1.1e-11 Score=100.55 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCCCCCeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEE
Q 030486 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ 95 (176)
Q Consensus 17 ~~~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~ 95 (176)
|...-..|++-|.||-+|.||..+|++|++++. +.++|+|..|......+. .++++.+||.++|+++ . +|+
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KG-rPIm~~~ER~e~V~ac----K---yVD 94 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKG-KTVMTEDERYESLRHC----K---WVD 94 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCC-CCCCCHHHHHHHHHhc----c---ccc
Confidence 333455789999999999999999999999973 568999998875432222 4799999999999876 1 222
Q ss_pred EeeccCCCCCc---cccCCccEEEEcCC-c---c-cChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHH
Q 030486 96 TEPITDPYGPS---IVDENLEAIVVSKE-T---L-PGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEA 167 (176)
Q Consensus 96 ~~~l~~~~~~~---~~~~~~~~ivvG~d-~---~-fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~ 167 (176)
.+.+..++..+ +...++|.++.|.+ + . -|.+.....+.. + .+..++ . ...+|+|.|.++|.
T Consensus 95 eVV~~aP~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~-G----~f~~i~--R----t~gvSTTdII~RIl 163 (294)
T PLN02413 95 EVIPDAPWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKI-G----KFKETK--R----TDGISTSDIIMRIV 163 (294)
T ss_pred EEeeCCCccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHC-C----eEEEec--C----CCCcCHHHHHHHHH
Confidence 22233333321 33568999998842 2 1 111111111211 1 122222 2 34599999999997
Q ss_pred hh
Q 030486 168 EK 169 (176)
Q Consensus 168 ~g 169 (176)
..
T Consensus 164 k~ 165 (294)
T PLN02413 164 KD 165 (294)
T ss_pred HH
Confidence 54
No 53
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.36 E-value=1.7e-12 Score=91.43 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=47.0
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
+++++|+|||+|.||+.++++|.+.+ +.++++++.++....+ ..+.++++|.++++++
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~-d~~i~~i~~~~~~~~~---~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA-DQCVVRIDDNPPVKVW---QDPHELEERKESIEED 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC-CcEEEEEcCCCccccc---CChHHHHHHHHHHHHH
Confidence 47899999999999999999999998 4677777766543322 2478999999999886
No 54
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.36 E-value=1.6e-11 Score=102.91 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=85.0
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEE---e
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQT---E 97 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~---~ 97 (176)
.++++++|+|||+|+||+.|+++|.+.++ .+.|+|-. .+ ..+++.++|++|++..+++++ +..+.. +
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d-~~~v~v~~-----~~---~~~f~~~~R~~~v~~~~~~~~-nv~v~~~~~~ 208 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCD-WLHLFVVK-----ED---ASLFSYDERFALVKQGIQDLS-NVTVHNGSAY 208 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCC-EEEEEEEe-----CC---CCCCCHHHHHHHHHHHhcCCC-CEEEEecCCc
Confidence 36899999999999999999999999985 55444422 11 347899999999999987764 221110 0
Q ss_pred eccCCCCCcc-------------------------ccCCccEEEEcCC-cccChhh-hhhhHHhCC--C--CceeEEEEe
Q 030486 98 PITDPYGPSI-------------------------VDENLEAIVVSKE-TLPGGLS-VNKKRADRG--L--SQLKIEVVD 146 (176)
Q Consensus 98 ~l~~~~~~~~-------------------------~~~~~~~ivvG~d-~~fG~~~-~~~~~~~~~--~--~~l~v~~v~ 146 (176)
.++...-|++ -.+++..=.||.| |+--... -..+..|.. + ..+.+.+|+
T Consensus 209 ~is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~t~~yn~~m~~~~~~~~~~~~I~~~~I~ 288 (332)
T TIGR00124 209 IISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPVTALYNQKMKYWLEEPNDAPPIEVVEIQ 288 (332)
T ss_pred eeccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHhHHHHHHHHHHhhhccCCCCCcEEEEEe
Confidence 0000001110 0346677778866 2211111 122333311 1 245666666
Q ss_pred eeecCCCCCeeehHHHHHHHHhhc
Q 030486 147 LVSEGSSGDKLSSSTLRKLEAEKA 170 (176)
Q Consensus 147 ~~~~~~~~~~ISST~IR~~i~~g~ 170 (176)
.... ++..+|+|.||++|.+|+
T Consensus 289 R~~~--~~~~~SASaIR~~L~~~~ 310 (332)
T TIGR00124 289 RKLA--AGGPISASTVRELLAKGD 310 (332)
T ss_pred eecC--CCCeeCHHHHHHHHHcCC
Confidence 5543 577899999999998875
No 55
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.33 E-value=1.3e-11 Score=105.57 Aligned_cols=137 Identities=22% Similarity=0.276 Sum_probs=90.4
Q ss_pred CCCCCCCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCC-CcCcCCCCCCHHHHHHHHHHHHHhcCCCceE
Q 030486 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSIKPELVV 94 (176)
Q Consensus 16 ~~~~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~-~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v 94 (176)
.|.+..++|++.|+||-+|.||..+|++|++++ +.++|+++.|+.+. .|....++++.+||..+++++ . ++
T Consensus 246 ~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG-d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ac----k---~V 317 (418)
T PLN02406 246 GPGPDARIVYIDGAFDLFHAGHVEILRLARALG-DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLAC----R---YV 317 (418)
T ss_pred CCCCCCeEEEECCeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhcc----C---cc
Confidence 355556789999999999999999999999987 47899999987553 232246799999999999775 1 33
Q ss_pred EEeeccCCCCCc---cccCCccEEEEcCCcccC---hhh--hhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHH
Q 030486 95 QTEPITDPYGPS---IVDENLEAIVVSKETLPG---GLS--VNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLE 166 (176)
Q Consensus 95 ~~~~l~~~~~~~---~~~~~~~~ivvG~d~~fG---~~~--~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i 166 (176)
+.+.+..++..+ +...+++.++.|.+|.-. ... .-...+..| .+..++ ....+|+|.|.++|
T Consensus 318 D~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G----~~~~i~------~~~~iSTt~II~RI 387 (418)
T PLN02406 318 DEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMG----IFQVLE------SPLDITTSTIIRRI 387 (418)
T ss_pred cEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCc----eEEEeC------CCCCCcHHHHHHHH
Confidence 333343444332 335689999999876311 000 000111111 122222 35679999999999
Q ss_pred Hhhc
Q 030486 167 AEKA 170 (176)
Q Consensus 167 ~~g~ 170 (176)
..+.
T Consensus 388 ~~~~ 391 (418)
T PLN02406 388 VANH 391 (418)
T ss_pred HHhH
Confidence 7654
No 56
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.29 E-value=7.1e-11 Score=98.84 Aligned_cols=64 Identities=27% Similarity=0.270 Sum_probs=50.9
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcC
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK 89 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~ 89 (176)
++++++|+|||+|.||+.++++|++.+ +.++|+++..+... + .....+.++|++|++.+++.++
T Consensus 2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~-d~v~v~~~~~~~~~-~--~~~~~~~~~R~~~l~~~~~~~~ 65 (325)
T TIGR01526 2 TIGVVFGKFYPLHTGHIYLIYEAFSKV-DELHIVVGSLFYDS-K--AKRPPPVQDRLRWLREIFKYQK 65 (325)
T ss_pred cEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCcCc-c--CCCCCCHHHHHHHHHHHhccCC
Confidence 478999999999999999999999997 56777676533221 2 1345799999999999988764
No 57
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=99.26 E-value=3.6e-11 Score=98.60 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=81.8
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCC----CCCCcCcCCCCCCHHHHHHHHHHH---------HHhcC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP----MLTNKQFAELIQPVDERMRNVEAY---------IKSIK 89 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~----~~~~k~~~~~l~~~~eR~~~l~~~---------~~~~~ 89 (176)
-++++|+ +|+||+.|+++|++.+. .+++||.+ +..++..+..+.|.++|.++++++ ++++.
T Consensus 26 ~v~tmG~---lH~GH~~Li~~a~~~a~---~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~GvD~v~~p~~~~my 99 (281)
T PRK00380 26 LVPTMGA---LHEGHLSLVREARAEAD---IVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAGVDLVFAPSVEEMY 99 (281)
T ss_pred EEEccCc---eeHHHHHHHHHHHHhCC---EEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcCCCEEEeCCHHHCC
Confidence 4667888 99999999999999872 45567653 222233456788999999999987 46677
Q ss_pred CCceEEEeeccCCCCCccccCCccEEEEcC----------------------Cc-ccChhhhhhhHHhCCC---CceeEE
Q 030486 90 PELVVQTEPITDPYGPSIVDENLEAIVVSK----------------------ET-LPGGLSVNKKRADRGL---SQLKIE 143 (176)
Q Consensus 90 ~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~----------------------d~-~fG~~~~~~~~~~~~~---~~l~v~ 143 (176)
|+.|+..+.. ..+..+++|. || +||.++..+......+ -.+.+.
T Consensus 100 p~~f~~~i~~----------~~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~~~l~~~v~ 169 (281)
T PRK00380 100 PQGLQTYVSV----------PGLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMVADLNLPVE 169 (281)
T ss_pred CccceeEEEc----------ccccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHHHHcCCceE
Confidence 7777653211 1367788888 99 9997655443332222 123445
Q ss_pred EE--eeeecCCCCCeeehHHH
Q 030486 144 VV--DLVSEGSSGDKLSSSTL 162 (176)
Q Consensus 144 ~v--~~~~~~~~~~~ISST~I 162 (176)
++ |.+.. .+|..+||-..
T Consensus 170 ii~~p~vre-~dGlaiSSRN~ 189 (281)
T PRK00380 170 IVGVPTVRE-ADGLALSSRNV 189 (281)
T ss_pred EEecCceEC-CCCCEeecCcc
Confidence 54 77763 37888888543
No 58
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=99.24 E-value=4.9e-11 Score=97.54 Aligned_cols=125 Identities=23% Similarity=0.295 Sum_probs=81.4
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccC--C--CCCCcCcCCCCCCHHHHHHHHHHH---------HHh
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--P--MLTNKQFAELIQPVDERMRNVEAY---------IKS 87 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~--~--~~~~k~~~~~l~~~~eR~~~l~~~---------~~~ 87 (176)
-..|.++|+ +|.||+.|+++|++.+ +. +++|+. | +.++...+..+.+.++|.++++++ +++
T Consensus 24 ig~V~TmG~---LH~GH~~LI~~a~~~a-~~--vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~GvD~vF~p~~~~ 97 (277)
T cd00560 24 IGFVPTMGA---LHEGHLSLVRRARAEN-DV--VVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEAGVDLLFAPSVEE 97 (277)
T ss_pred EEEEECCCc---ccHHHHHHHHHHHHhC-CE--EEEEecCChhhcCCcccccccCCCHHHHHHHHHHCCCCEEECCCHHH
Confidence 346789999 9999999999999987 23 334543 2 222233355678999999999986 455
Q ss_pred cCCCceEEEeeccCCCCCccccCCccEEEEcC----------------------C-cccChhhhhhhHHhCCC---Ccee
Q 030486 88 IKPELVVQTEPITDPYGPSIVDENLEAIVVSK----------------------E-TLPGGLSVNKKRADRGL---SQLK 141 (176)
Q Consensus 88 ~~~~~~v~~~~l~~~~~~~~~~~~~~~ivvG~----------------------d-~~fG~~~~~~~~~~~~~---~~l~ 141 (176)
+.|+.|+.. +.+ ..++..+++|. | |+||.++.++......+ -.+.
T Consensus 98 m~p~~f~~~--~v~-------~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~~~dl~~~ 168 (277)
T cd00560 98 MYPEGLFST--FVD-------VGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRMVRDLNLP 168 (277)
T ss_pred cCCCCCceE--EEe-------cCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHHHHHcCCe
Confidence 666666542 111 24788999999 9 99997654433322222 2345
Q ss_pred EEEE--eeeecCCCCCeeehHH
Q 030486 142 IEVV--DLVSEGSSGDKLSSST 161 (176)
Q Consensus 142 v~~v--~~~~~~~~~~~ISST~ 161 (176)
+.++ +.+.. .+|..|||..
T Consensus 169 v~ii~~~~vr~-~dGlaiSSRN 189 (277)
T cd00560 169 VEIVGCPTVRE-EDGLALSSRN 189 (277)
T ss_pred EEEEcCCceec-CCCceEeCCC
Confidence 6665 44432 3788899854
No 59
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.20 E-value=1.2e-10 Score=88.54 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeecc
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~ 100 (176)
+..++++|.|.|+|.||+.+++.|++.. +.++|++.++..-...+++ .|..||..|+++.+.+...+.-+-...+.
T Consensus 3 ~~rgv~~GRFqP~H~GHl~vi~~al~~v-DeliI~iGSa~~~~t~~nP---fTagER~~mi~~~L~~~~~~~r~~~~~v~ 78 (172)
T COG1056 3 MKRGVYFGRFQPLHTGHLYVIKRALSKV-DELIIVIGSAQESHTLKNP---FTAGERIPMIRDRLREAGLDLRVYLRPVF 78 (172)
T ss_pred ceEEEEEeccCCccHhHHHHHHHHHHhC-CEEEEEEccCcccccccCC---CCccchhHHHHHHHHhcCCCceEEEEecC
Confidence 5678999999999999999999999997 4677777665322222222 67899999999998865533212222333
Q ss_pred CCCCCccccCCccEEEEcCCcccChhhh-hhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhcc
Q 030486 101 DPYGPSIVDENLEAIVVSKETLPGGLSV-NKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 101 ~~~~~~~~~~~~~~ivvG~d~~fG~~~~-~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~~ 171 (176)
|....+++-.-+...+-.+|-.++.+.+ +.+....+ .++..-+.+ .....|.|.||+.+..|+.
T Consensus 79 d~~~n~i~v~~v~~~~p~~~~~~~~n~~v~~lf~~~~---~~~~~p~~f----~~~e~~~t~ir~~~~~~e~ 143 (172)
T COG1056 79 DIEYNDIWVAYVEDLVPPFDVVYTWNPWVARLFHEKG---EKVYYPPMF----PRWEYSGTAIRRKMLGGED 143 (172)
T ss_pred ccccchhhHHHHhhcCCCccccCCCCHHHHHHHhhcC---ceeecCCcc----cccccccchHHHHhhcCcc
Confidence 3221111111123344444444443322 22222222 233332322 4677899999999998887
No 60
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=99.03 E-value=6.9e-10 Score=84.37 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=81.9
Q ss_pred eCcCCcCCHHHHHHHHHHHHHhcCCeEE-EEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEE---EeeccCC
Q 030486 27 GGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ---TEPITDP 102 (176)
Q Consensus 27 ~G~FDgvH~GH~~ll~~a~~~~~~~~~v-~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~---~~~l~~~ 102 (176)
.-+=+|+++||+.|+++|.+.++ .+.| ++..| ..++|+++|.+|+++-+++++ +..+. .+.++..
T Consensus 5 VMNaNPFT~GH~yLiE~Aa~~~d-~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L~-NV~V~~~g~YiIS~a 73 (182)
T PF08218_consen 5 VMNANPFTLGHRYLIEQAAKECD-WLHVFVVSED---------RSLFPFADRYELVKEGTADLP-NVTVHPGGDYIISSA 73 (182)
T ss_pred EEcCCCCccHHHHHHHHHHHhCC-EEEEEEEccc---------cCcCCHHHHHHHHHHHhCcCC-CEEEEcCCCeeeecc
Confidence 35678999999999999999884 5543 44444 235789999999999877663 11110 0001000
Q ss_pred CCCcc-------------------------ccCCccEEEEcCC-cccChhhhh-hhHHhCCCCceeEEEEeeeecCCCCC
Q 030486 103 YGPSI-------------------------VDENLEAIVVSKE-TLPGGLSVN-KKRADRGLSQLKIEVVDLVSEGSSGD 155 (176)
Q Consensus 103 ~~~~~-------------------------~~~~~~~ivvG~d-~~fG~~~~~-~~~~~~~~~~l~v~~v~~~~~~~~~~ 155 (176)
.-|++ ..+++..=.||.| +.--.+.-| .+..+.....+++.+||... .++.
T Consensus 74 TFPsYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~--~~g~ 151 (182)
T PF08218_consen 74 TFPSYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIPRKE--INGE 151 (182)
T ss_pred cChhhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEeccc--CCCc
Confidence 00110 1346777778866 222212112 23333322335666666554 5899
Q ss_pred eeehHHHHHHHHhhcccc
Q 030486 156 KLSSSTLRKLEAEKAKNE 173 (176)
Q Consensus 156 ~ISST~IR~~i~~g~~~~ 173 (176)
.||.|++|++|++|+..+
T Consensus 152 ~ISAS~VR~~l~~~~~~~ 169 (182)
T PF08218_consen 152 PISASRVRKLLKEGDFEE 169 (182)
T ss_pred EEcHHHHHHHHHcCCHHH
Confidence 999999999999998754
No 61
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=2.8e-09 Score=90.12 Aligned_cols=126 Identities=24% Similarity=0.319 Sum_probs=84.8
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCC-CcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeeccC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~-~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~~ 101 (176)
.|++-|.||.+|.||..+|.+|++++ +.++|++..|...+ -|...+++.+.++|...+..+ ..++ ++- .. +
T Consensus 334 vvfTNGcFDIlH~GHvsyL~~Ar~lg-d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L-~~VD---~vV--~F-~ 405 (467)
T COG2870 334 VVFTNGCFDILHAGHVTYLAQARALG-DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAAL-ESVD---LVV--IF-D 405 (467)
T ss_pred EEEecchhhhccccHHHHHHHHHhhC-CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhc-ccce---EEE--Ee-c
Confidence 78999999999999999999999998 58999998885442 244457899999999987654 2222 221 11 1
Q ss_pred CCCCc--cccCCccEEEEcCCccc----ChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhh
Q 030486 102 PYGPS--IVDENLEAIVVSKETLP----GGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEK 169 (176)
Q Consensus 102 ~~~~~--~~~~~~~~ivvG~d~~f----G~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g 169 (176)
-..|. +....+|.+|-|-||.- |++- ...+++ ++..+++. ...|+|.|-+.|+++
T Consensus 406 edTP~~LI~~~~PdilVKGgDy~~~~i~g~~~---v~~~GG----~v~~i~f~------~g~STt~ii~ki~~~ 466 (467)
T COG2870 406 EDTPEELIEAVKPDILVKGGDYKIEKIVGADI---VEAYGG----EVLLIPFE------EGKSTTKIIEKIRAK 466 (467)
T ss_pred CCCHHHHHHHhCcceEEccCCCChhhccchhh---hhhcCC----eEEEEecc------cCCcHHHHHHHHhcc
Confidence 11221 22458999999988753 3221 122232 45555653 345999999988764
No 62
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=98.77 E-value=2.5e-08 Score=81.72 Aligned_cols=124 Identities=22% Similarity=0.246 Sum_probs=80.5
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCC-CCCCcCcCCCCCCHHHHHHHHHHH--HHhcCCCc-eEEEee
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP-MLTNKQFAELIQPVDERMRNVEAY--IKSIKPEL-VVQTEP 98 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~-~~~~k~~~~~l~~~~eR~~~l~~~--~~~~~~~~-~v~~~~ 98 (176)
.|.+-|.||-+|.||-..|.+|++++ +.++|+|-.|+ +..+|. .++++.+||++|++.. ++++-+.. ++...+
T Consensus 10 rVw~DGCfDm~HyGHanaLrQAkalG-dkLivGVHsDeeI~~nKG--pPV~t~eERy~~v~~ikWVDEVV~~APyvtt~~ 86 (358)
T KOG2803|consen 10 RVWADGCFDMVHYGHANALRQAKALG-DKLIVGVHSDEEITLNKG--PPVFTDEERYEMVKAIKWVDEVVEGAPYVTTLE 86 (358)
T ss_pred eEEeccchhhhhhhhhHHHHHHHHhC-CeEEEEecchHHHHhcCC--CCcccHHHHHHHHhhcchhhhhhcCCCeeccHH
Confidence 58899999999999999999999987 57889997765 333443 5789999999999875 44432211 221111
Q ss_pred ccCCCCCccccCCccEEEEcCCc---ccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHH
Q 030486 99 ITDPYGPSIVDENLEAIVVSKET---LPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEA 167 (176)
Q Consensus 99 l~~~~~~~~~~~~~~~ivvG~d~---~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~ 167 (176)
- ..+.+++++|.|.|- .+|.+.-...++.+.+++.+ -...+|+|.|-.++.
T Consensus 87 ~-------md~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevK-----------RT~GVSTTelvgRml 140 (358)
T KOG2803|consen 87 W-------MDKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVK-----------RTEGVSTTELVGRML 140 (358)
T ss_pred H-------HHHhCCeEEEeCCcceecCCCccHHHHHHHhcchheee-----------eccCcchhhhhhHhh
Confidence 1 124689999999994 35544333233333333221 134567777666543
No 63
>PRK13670 hypothetical protein; Provisional
Probab=98.76 E-value=8.5e-09 Score=88.21 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=60.0
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCC-eEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH-----------HHhcCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDR-IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY-----------IKSIKP 90 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~-~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~-----------~~~~~~ 90 (176)
.+-.+=-|||+|+||+.+|++|++.+... .++++ +..++.+ ..+. |++..+|.+++..+ ++..+|
T Consensus 3 ~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vm-p~~f~qr-g~p~-i~~~~~R~~~a~~~GvD~vielpf~~a~~sa 79 (388)
T PRK13670 3 VTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVM-SGNFVQR-GEPA-IVDKWTRAKMALENGVDLVVELPFLYSVQSA 79 (388)
T ss_pred eeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEe-cHHHhCC-CCCC-CCCHHHHHHHHHHcCCCEEEEeCCchHhCCH
Confidence 44456789999999999999999988644 44555 3334432 2244 89999999999886 234455
Q ss_pred CceEEE-eeccCCCCCccccCCccEEEEcCC
Q 030486 91 ELVVQT-EPITDPYGPSIVDENLEAIVVSKE 120 (176)
Q Consensus 91 ~~~v~~-~~l~~~~~~~~~~~~~~~ivvG~d 120 (176)
+.|++. +.+ +..+++++||+|+|
T Consensus 80 e~F~~~aV~i-------L~~l~v~~lv~G~e 103 (388)
T PRK13670 80 DFFAEGAVSI-------LDALGVDSLVFGSE 103 (388)
T ss_pred HHHHHhHHHH-------HHHcCCCEEEEcCC
Confidence 555541 001 12357999999998
No 64
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=98.62 E-value=3.3e-07 Score=75.25 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=82.2
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCc-CCCCCCHHHHHHHHHHHHHhcCCCceEEEeec
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQF-AELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~-~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l 99 (176)
-++++.-|.||-+|.||+..|+.|+++++ .++|++.+|+....++. ..+++++.||.--+.++ . +++-+.+
T Consensus 198 ~kvVYvdGaFDLFH~GHl~~Le~ak~lgd-yLIvGI~~D~~vneykgs~~PiMnl~ER~Lsvlac-k------yVdeVvv 269 (358)
T KOG2803|consen 198 DKVVYVDGAFDLFHAGHLDFLEKAKRLGD-YLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLAC-K------YVDEVVV 269 (358)
T ss_pred CcEEEEcCchhhhccchHHHHHHHHhccC-ceEEEeecCcchhhhccCCCccchHHHHHHHHhhh-c------ccceEEE
Confidence 45778889999999999999999999984 89999999875543332 35799999998777654 1 2221122
Q ss_pred cCCCCCc---cccCCccEEEEcC--CcccChhhhhhhHHhCCCCceeEEEEeeeecCCCCCeeehHHHHHHHHhhcc
Q 030486 100 TDPYGPS---IVDENLEAIVVSK--ETLPGGLSVNKKRADRGLSQLKIEVVDLVSEGSSGDKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 100 ~~~~~~~---~~~~~~~~ivvG~--d~~fG~~~~~~~~~~~~~~~l~v~~v~~~~~~~~~~~ISST~IR~~i~~g~~ 171 (176)
-.++..+ +...+++.++.|. +++-..+- .... ....+.... ..+..+++..|-++|...++
T Consensus 270 GaP~~v~s~~i~~~~~~~v~~g~~~~~~~~~~p------y~~~---k~~~i~~~~--~~~~dltte~Iv~RIis~r~ 335 (358)
T KOG2803|consen 270 GAPYEVTSEFIKLFNIDKVAHGTIPDFRDPSDP------YADP---KRRGIFEEA--DSGSDLTTELIVERIISNRQ 335 (358)
T ss_pred cCchhccHHHHHhcCceEEEEeccccccCccCc------cccc---hhhcchhhc--CCcccccHHHHHHHHHHHHH
Confidence 2222221 2346788888886 44444210 0000 111111111 24555899999998876554
No 65
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.40 E-value=1.3e-06 Score=71.38 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCe-EEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcC----------
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRI-VVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK---------- 89 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~-~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~---------- 89 (176)
.+++...-+=+|+.+||+.|+++|.+.|+ -+ ..+|..|. .+.|+++|.+|++.-++.++
T Consensus 145 kkIgaIVMNANPFTLGH~YLVEqAaaqcD-wlHLFvV~eD~---------S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdY 214 (352)
T COG3053 145 KKIGAIVMNANPFTLGHRYLVEQAAAQCD-WLHLFVVKEDS---------SLFPYEDRLDLVKKGTADLPNVTVHSGSDY 214 (352)
T ss_pred CeeEEEEEeCCCccchhHHHHHHHHhhCC-EEEEEEEeccc---------ccCCHHHHHHHHHHhhccCCceEEecCCCe
Confidence 35677778999999999999999999984 43 23344442 25789999999998765543
Q ss_pred -------CCceEEEeec-cCC--------CCCcc-ccCCccEEEEcCC-c-ccChhhhhhhHHhCCC-----CceeEEEE
Q 030486 90 -------PELVVQTEPI-TDP--------YGPSI-VDENLEAIVVSKE-T-LPGGLSVNKKRADRGL-----SQLKIEVV 145 (176)
Q Consensus 90 -------~~~~v~~~~l-~~~--------~~~~~-~~~~~~~ivvG~d-~-~fG~~~~~~~~~~~~~-----~~l~v~~v 145 (176)
|..|++.... .+- |...+ ..+++.+=.||.| | +-.+..-.+++.|-.- ++++++++
T Consensus 215 iISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vvei 294 (352)
T COG3053 215 IISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVVEI 294 (352)
T ss_pred EEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEEEe
Confidence 1112211000 000 00000 0246666778865 2 2222222334555322 23566666
Q ss_pred eeeecCCCCCeeehHHHHHHHHhhcc
Q 030486 146 DLVSEGSSGDKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 146 ~~~~~~~~~~~ISST~IR~~i~~g~~ 171 (176)
|... .++..||.|++|+++++++.
T Consensus 295 ~Rk~--~~~~~ISAS~VR~~l~~~~~ 318 (352)
T COG3053 295 ERKK--YQEMPISASRVRQLLAKNDL 318 (352)
T ss_pred ehhh--hcCCcccHHHHHHHHHhCCH
Confidence 6655 36899999999999998875
No 66
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=98.40 E-value=1.7e-06 Score=71.04 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=42.2
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccC--C--CCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--P--MLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~--~--~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
.-|+++|+ +|.||+.|+++|++.++ .+++|+. | +.++......+.+.++|.++++++
T Consensus 25 g~VpTmG~---LH~GH~~LI~~a~~~a~---~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 25 GFVPTMGN---LHDGHMSLIDRAVAEND---VVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred EEEECCCc---ccHHHHHHHHHHHHhCC---eEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 34678999 99999999999999873 3445554 2 222233356688999999999987
No 67
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=98.40 E-value=9.4e-06 Score=69.47 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=62.7
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCC--ceEEEee
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE--LVVQTEP 98 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~--~~v~~~~ 98 (176)
+.|+..=||||+|+||..+++.|++... +.+++.+...+ .|. ...+.+.|+++++.+++.+.+. ..+....
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~---~k~---~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~ 257 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL---TKP---GDIPAEVRMRAYEVLKEGYPNPERVMLTFLP 257 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC---CCC---CCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 5788899999999999999999999722 34554444442 121 3478999999999998887553 2233222
Q ss_pred ccCCC-CCcc--------ccCCccEEEEcCCc
Q 030486 99 ITDPY-GPSI--------VDENLEAIVVSKET 121 (176)
Q Consensus 99 l~~~~-~~~~--------~~~~~~~ivvG~d~ 121 (176)
+.-.+ ||+- ...++.++++|.|.
T Consensus 258 ~em~~agpreall~Aiir~nyG~th~IiG~Dh 289 (383)
T TIGR00339 258 LAMRYAGPREAIWHAIIRKNYGATHFIVGRDH 289 (383)
T ss_pred hHhhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence 22122 4431 12467799999874
No 68
>PLN02660 pantoate--beta-alanine ligase
Probab=98.32 E-value=5.2e-06 Score=68.15 Aligned_cols=57 Identities=26% Similarity=0.318 Sum_probs=42.5
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccC--CC-CCC-cCcCCCCCCHHHHHHHHHHH
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--PM-LTN-KQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~--~~-~~~-k~~~~~l~~~~eR~~~l~~~ 84 (176)
.-|+++|+ +|.||+.|+++|++.++ .+++||. |. +.+ ......+.|.++|.++++++
T Consensus 24 gfVpTmG~---LH~GH~~LI~~a~~~a~---~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 24 ALVPTMGY---LHEGHLSLVRAARARAD---VVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred EEEEcCch---hhHHHHHHHHHHHHhCC---EEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 45789999 99999999999999874 3445554 21 222 23355688999999999987
No 69
>PRK13671 hypothetical protein; Provisional
Probab=98.07 E-value=1e-05 Score=66.89 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=42.5
Q ss_pred EEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 25 VLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 25 v~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
-.+=+|||+|.||..+++++++... +.++++++.++..+ . ...+.+.++|.+|+...
T Consensus 4 GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qr--g-~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 4 GIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQR--G-EIAVASFEKRKKIALKY 61 (298)
T ss_pred eEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCC--C-CCCCCCHHHHHHHHHHc
Confidence 3456999999999999999999764 34555566665332 2 23456999999999886
No 70
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=97.91 E-value=0.0003 Score=59.39 Aligned_cols=143 Identities=21% Similarity=0.249 Sum_probs=84.8
Q ss_pred CCeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCc--eEEEee
Q 030486 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPEL--VVQTEP 98 (176)
Q Consensus 21 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~--~v~~~~ 98 (176)
-+++++.-|+|++|+||-.|-+.|++.++..++. +++..++ +.. .+.+-|++..+.++...-|.+ ++....
T Consensus 183 wk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~-----plVG~tk-~gD-~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~ 255 (397)
T COG2046 183 WKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVH-----PLVGATK-PGD-IPDEVRMEYYEALLKHYYPPDRVFLSVLP 255 (397)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEE-----eeecccc-CCC-chHHHHHHHHHHHHHhCCCCCcEEEEecH
Confidence 4689999999999999999999999998532221 1111111 112 467889999999888765432 344322
Q ss_pred ccCCC-CCc------c--ccCCccEEEEcCCcc-----cChhhhhhhHHhCCCCceeEEEEeeee---------------
Q 030486 99 ITDPY-GPS------I--VDENLEAIVVSKETL-----PGGLSVNKKRADRGLSQLKIEVVDLVS--------------- 149 (176)
Q Consensus 99 l~~~~-~~~------~--~~~~~~~ivvG~d~~-----fG~~~~~~~~~~~~~~~l~v~~v~~~~--------------- 149 (176)
..-.| ||- + ...++.+.+||.|.. +|......+-.... +++++..+.+..
T Consensus 256 ~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~-~eLgI~p~~f~e~~YC~~c~~~~~~~~ 334 (397)
T COG2046 256 AAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFS-PELGITPVFFEEFFYCPKCGQMVSTKT 334 (397)
T ss_pred HHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcc-cccCcEEEeccceeecccccCCccccc
Confidence 21223 231 1 246899999999963 33222222222211 244444433210
Q ss_pred --c-CCCCCeeehHHHHHHHHhhcc
Q 030486 150 --E-GSSGDKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 150 --~-~~~~~~ISST~IR~~i~~g~~ 171 (176)
. ......+|+|.+|++|++|..
T Consensus 335 cph~~~~~~~~SGt~lR~~Lr~G~~ 359 (397)
T COG2046 335 CPHGDEHHLHISGTKLREMLRAGVK 359 (397)
T ss_pred CCCCCcceEEEccHHHHHHHHcCCC
Confidence 0 012467999999999999853
No 71
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=97.65 E-value=0.002 Score=51.13 Aligned_cols=144 Identities=19% Similarity=0.289 Sum_probs=73.6
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHh-cCCCc-eEEEeec
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKS-IKPEL-VVQTEPI 99 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~-~~~~~-~v~~~~l 99 (176)
+.|++.=+-+|+|+||..|++.|++.+.+.+.|-..-.+ .+ ..-.+.+-|++-.+.+++. ++++. .+.....
T Consensus 21 ~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG~----~k--~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~ 94 (215)
T PF01747_consen 21 RRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVGP----TK--PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPL 94 (215)
T ss_dssp SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBESB-----S--TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccCC----CC--cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCc
Confidence 567888889999999999999999998444443222221 11 1125789999999999988 44432 2222222
Q ss_pred cCCC-CCc--c------ccCCccEEEEcCCcc-----cChh---hhh-hhHHhCCCCceeEE------------EEeeee
Q 030486 100 TDPY-GPS--I------VDENLEAIVVSKETL-----PGGL---SVN-KKRADRGLSQLKIE------------VVDLVS 149 (176)
Q Consensus 100 ~~~~-~~~--~------~~~~~~~ivvG~d~~-----fG~~---~~~-~~~~~~~~~~l~v~------------~v~~~~ 149 (176)
.-.+ ||. + ...++.+++||.|.. +|.. .+- +....-+++.+.+. ....+.
T Consensus 95 ~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~g~~Y~~~~a~~i~~~~~~el~I~~v~~~~~~Yc~~~~~~~~~~~cp 174 (215)
T PF01747_consen 95 PMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDFYDPYEAQEIFDEYAGELGIEPVPFPEMVYCPKCGQYVSAKTCP 174 (215)
T ss_dssp B---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-SCBSS-TTHHHHHHHHHHHHCTSEEEE---EEEETTTTEEEECGGSS
T ss_pred hhcccCcHHHHHHHHHHHHCCCceEEeCCcCCCccccCCccHHHHHHHcCcccCCceEEecceEEEEcCCCeEeeccccC
Confidence 1222 221 1 146899999999863 2322 221 11223334322111 011111
Q ss_pred cCCCC-CeeehHHHHHHHHhhcc
Q 030486 150 EGSSG-DKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 150 ~~~~~-~~ISST~IR~~i~~g~~ 171 (176)
..... ..||+|.||+++++|..
T Consensus 175 ~~~~~~~~iSgt~ir~~L~~G~~ 197 (215)
T PF01747_consen 175 HGKHHHISISGTEIRELLREGEE 197 (215)
T ss_dssp TTTGGGEE--HHHHHHHHHTT--
T ss_pred CCCCcceeeCHHHHHHHHHCcCC
Confidence 11111 47899999999999864
No 72
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=97.62 E-value=0.0028 Score=53.86 Aligned_cols=143 Identities=23% Similarity=0.235 Sum_probs=83.0
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhc-CCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEeecc
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~v~~~~l~ 100 (176)
+.|+..=|-+|+|+||..|++.|++.+. +.+.+-..-.. .|. . -.+.+-|.+-.+.+++...|..-+-...+.
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~---~k~--~-d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp 230 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW---TKP--G-DVPDEVRMRAYEALLEEYYLPERTVLAILP 230 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC---CCC--C-CCCHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 4788889999999999999999999875 33333222111 111 1 257899999999998887644333222221
Q ss_pred --CCC-CCc--c------ccCCccEEEEcCCcc--------cChhhhhhhHHhCCCCceeEEEEeee-------------
Q 030486 101 --DPY-GPS--I------VDENLEAIVVSKETL--------PGGLSVNKKRADRGLSQLKIEVVDLV------------- 148 (176)
Q Consensus 101 --~~~-~~~--~------~~~~~~~ivvG~d~~--------fG~~~~~~~~~~~~~~~l~v~~v~~~------------- 148 (176)
-.| ||. + ...++.+++||.|.. +|......+..... .++.+..+++.
T Consensus 231 ~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~~~yY~~y~aq~i~~~~~-~~l~I~~v~~~~~~Yc~~c~~~~~ 309 (353)
T cd00517 231 LPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHPGDYYGPYDAQEIFKKLA-PELGIEPVPFREAAYCPKCDGMAS 309 (353)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCccccCCcchhHHHHHhCc-ccCCceEEecceeEEecCCCeEEe
Confidence 122 332 1 146899999998752 22222221211111 11333222210
Q ss_pred ----ecCCCCCeeehHHHHHHHHhhcc
Q 030486 149 ----SEGSSGDKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 149 ----~~~~~~~~ISST~IR~~i~~g~~ 171 (176)
....+-..+|.|.||+++++|..
T Consensus 310 ~~~cp~~~~~~~iSgt~iR~~L~~G~~ 336 (353)
T cd00517 310 EDTCPHGEDFLNISGTKLRKMLREGEK 336 (353)
T ss_pred cccCCCCCceeeeCHHHHHHHHHCCCC
Confidence 00122457999999999999864
No 73
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=97.59 E-value=0.00012 Score=60.12 Aligned_cols=68 Identities=24% Similarity=0.438 Sum_probs=53.4
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcC-CeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH--HHhcCCC
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY--IKSIKPE 91 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~-~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~--~~~~~~~ 91 (176)
.|++-|-||-+|.||..-|.+|+..... +++|+++.|.+. ++-....+++..||++.|.-+ ++++-++
T Consensus 65 RVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~T-hk~KG~TVm~e~ERyE~lrHCryVDEVi~~ 135 (348)
T KOG2804|consen 65 RVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELT-HKFKGRTVMNENERYEALRHCRYVDEVIPN 135 (348)
T ss_pred EEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhh-hhccCceecChHHHHHHhhhhhhhhhhccC
Confidence 5899999999999999999999998754 378999998743 222235689999999999875 5554433
No 74
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=97.55 E-value=0.0033 Score=54.04 Aligned_cols=143 Identities=20% Similarity=0.301 Sum_probs=82.8
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHh-cCCCc-eEEEeec
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKS-IKPEL-VVQTEPI 99 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~-~~~~~-~v~~~~l 99 (176)
++|+..=|-+|+|+||..|.+.|.+.++ .+++ . +++...+ ..-.+.+-|.+-.+.++++ ++++- .+.....
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~d-~lll--~--plvG~~k--~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~ 259 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIVD-GLLL--N--PLVGETK--SGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPA 259 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhcC-eEEE--e--cCcCCCC--CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 5788889999999999999999999874 3322 1 2221111 1125789999999999884 44432 2222222
Q ss_pred cCCC-CCc--c------ccCCccEEEEcCCc-----ccChhhhhhhHHhCCCCceeEEEEee-----------------e
Q 030486 100 TDPY-GPS--I------VDENLEAIVVSKET-----LPGGLSVNKKRADRGLSQLKIEVVDL-----------------V 148 (176)
Q Consensus 100 ~~~~-~~~--~------~~~~~~~ivvG~d~-----~fG~~~~~~~~~~~~~~~l~v~~v~~-----------------~ 148 (176)
.-.| ||. + ...++.+++||.|. .+|.....++-......++++..+++ +
T Consensus 260 ~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g~~Y~~~~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~c 339 (391)
T PRK04149 260 AMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFTEEELGITPLKFEEAFYCPKCGGMASEKTC 339 (391)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCccccCCCchHHHHHHhCCcccCCceEEecceeEEecCCCeEEEcccC
Confidence 1122 332 1 14689999999885 34433332222222112233322221 1
Q ss_pred ecCC-CCCeeehHHHHHHHHhhcc
Q 030486 149 SEGS-SGDKLSSSTLRKLEAEKAK 171 (176)
Q Consensus 149 ~~~~-~~~~ISST~IR~~i~~g~~ 171 (176)
.... .-..||.|.||+++++|..
T Consensus 340 phg~~~~~~iSgt~iR~~L~~G~~ 363 (391)
T PRK04149 340 PHGKEDRVHLSGTKVREMLREGEK 363 (391)
T ss_pred CCCCCceEeeCHHHHHHHHHCcCC
Confidence 1101 2347999999999999864
No 75
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.16 E-value=0.013 Score=52.73 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=60.9
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHHHHhcCCCce-EEEeecc
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELV-VQTEPIT 100 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~~~~~~~~~~-v~~~~l~ 100 (176)
+.|+..=|-+|+|+||..|++.|++.++..+. + .++....+ ..-.+.+-|.+-.+.+++.++++-. +..++..
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d~~ll--l--~p~~G~~k--~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~ 260 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVGANLL--I--HPVVGMTK--PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLA 260 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCeEE--E--ecCCCCCC--CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccch
Confidence 57888899999999999999999998743222 2 12221111 1225789999999999988766532 2222221
Q ss_pred CCC-CCc--c------ccCCccEEEEcCCc
Q 030486 101 DPY-GPS--I------VDENLEAIVVSKET 121 (176)
Q Consensus 101 ~~~-~~~--~------~~~~~~~ivvG~d~ 121 (176)
-.| ||. + ...++.+++||.|.
T Consensus 261 mryaGpreai~hAi~r~N~Gcth~ivGrdh 290 (568)
T PRK05537 261 MRMAGPREALWHAIIRRNYGCTHFIVGRDH 290 (568)
T ss_pred hcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence 122 332 1 14689999999774
No 76
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.04 E-value=0.0014 Score=56.41 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=30.1
Q ss_pred EEEeCcCCcCCHHHHHHHHHHHHHhcCCe-EEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 24 VVLGGTFDRLHDGHRLFLKASAELARDRI-VVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 24 vv~~G~FDgvH~GH~~ll~~a~~~~~~~~-~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
+-.+=-|+|+|+||...|+++++...... +++++.+ ++-+ ...-+.+--.|.+|.-..
T Consensus 4 ~GIIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGn-FvQR--GEPAi~dKw~RA~~AL~~ 62 (388)
T PF05636_consen 4 VGIIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGN-FVQR--GEPAIIDKWTRAEMALKN 62 (388)
T ss_dssp ---E---TT--HHHHHHHHHHH---TSSEEEEEE--T-TSBT--SSB-SS-HHHHHHHHHHH
T ss_pred CCeEEeECCccHHHHHHHHHHhccCCCCEEEEEECCC-cccC--CCeeeCCHHHHHHHHHHc
Confidence 34456799999999999999999876554 4445554 4322 223467888898887665
No 77
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.08 E-value=0.012 Score=49.98 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=41.1
Q ss_pred EeCcCCcCCHHHHHHHHHHHHHhcCC-eEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 26 LGGTFDRLHDGHRLFLKASAELARDR-IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 26 ~~G~FDgvH~GH~~ll~~a~~~~~~~-~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
.+=-|||+|+||+.+|++|.+++... .+++++.+-. .+....+.+..+|.+|....
T Consensus 6 ii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~---qRgepai~~k~~r~~~aL~~ 62 (358)
T COG1323 6 IIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFT---QRGEPAIGHKWERKKMALEG 62 (358)
T ss_pred eeeecCcccccHHHHHHHHHHhccCCceEEeeecchh---hcCCCccccHHHHHhhhhhc
Confidence 44579999999999999999976555 4555665532 22345678888999988765
No 78
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=95.92 E-value=0.14 Score=42.00 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=35.8
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEE--EEccCCCCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVV--GVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v--~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
+.+.+.=|--.+|-||+.|+++|++.++ .++| .+..-.+=++......--++++=.++++..
T Consensus 22 k~Vg~VPTMG~LH~GHlsLVr~A~~~~d-~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~ 85 (285)
T COG0414 22 KRVGLVPTMGNLHEGHLSLVRRAKKEND-VVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE 85 (285)
T ss_pred CEEEEEcCCcccchHHHHHHHHHhhcCC-eEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc
Confidence 3456666777899999999999998763 4433 333222212222111223556666666664
No 79
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=94.90 E-value=0.15 Score=45.52 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=38.3
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEE--ccCCCCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV--CDGPMLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~v--t~~~~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
++-+.-|==.+|-||+.|+++|++.++ .++|.+ ..-.+-++......--++++=.+++++.
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d-~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 83 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQEND-VVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA 83 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhCC-EEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc
Confidence 566677777899999999999999874 443333 2222222222222224667777777775
No 80
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=94.64 E-value=0.15 Score=40.17 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=41.2
Q ss_pred eEEEeCcCCcCCHHHHHHHHHHHHHhcCC----eEEEEccCCCCC-CcCcCCCCCCHHHHHHHHHHH
Q 030486 23 AVVLGGTFDRLHDGHRLFLKASAELARDR----IVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 23 ~vv~~G~FDgvH~GH~~ll~~a~~~~~~~----~~v~vt~~~~~~-~k~~~~~l~~~~eR~~~l~~~ 84 (176)
..++.|+|+|+..+|+.+.+-|+..-.+. ++-++-+ |+-. .|+ +.|.|...|++|++.+
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkK--KgLipa~hrv~~~ElA 73 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKK--KGLIPAYHRVRMVELA 73 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhc--cccchhhhHHHHHHhh
Confidence 34788999999999999999999875322 3333332 2211 122 3578899999999987
No 81
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=89.87 E-value=0.67 Score=38.23 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=31.5
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCCeEEEEccCC--CCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~~~v~vt~~~--~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
.++-+..|==.+|-||+.|+++|+..++ .++|.+--+| +-++......--+++.=.++++++
T Consensus 22 ~~igfVPTMGaLHeGHlsLi~~A~~~~d-~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~ 85 (280)
T PF02569_consen 22 KTIGFVPTMGALHEGHLSLIRRARAEND-VVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA 85 (280)
T ss_dssp SSEEEEEE-SS--HHHHHHHHHHHHHSS-EEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT
T ss_pred CeEEEECCCchhhHHHHHHHHHHHhCCC-EEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc
Confidence 3455555666689999999999998773 4333332222 222222222224566667777765
No 82
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=66.93 E-value=11 Score=30.22 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=36.3
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHhcCC-eEEEEccCCCCCCcCcCCCCCCHHHHHHHHHHH
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELARDR-IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~-~~v~vt~~~~~~~k~~~~~l~~~~eR~~~l~~~ 84 (176)
+++-+.-|--.+|-||..|+.++++..... +.+.+....+-+.......-.++.+-+..++++
T Consensus 24 ~tIgfVPTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L 87 (283)
T KOG3042|consen 24 ETIGFVPTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL 87 (283)
T ss_pred CeEEEecccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc
Confidence 455555667789999999999999987422 234444433322221111113445556777776
No 83
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=58.77 E-value=5.7 Score=31.49 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.5
Q ss_pred CeeehHHHHHHHHhh
Q 030486 155 DKLSSSTLRKLEAEK 169 (176)
Q Consensus 155 ~~ISST~IR~~i~~g 169 (176)
..||||+||++++.|
T Consensus 195 N~ISStklr~ai~r~ 209 (234)
T KOG3199|consen 195 NDISSTKLRQAIRRG 209 (234)
T ss_pred CCcchHHHHHHHHcC
Confidence 468999999999988
No 84
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=35.62 E-value=9.4 Score=33.66 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=23.5
Q ss_pred CeEEEeCcCCcCCHHHHHHHHHHHHHh
Q 030486 22 GAVVLGGTFDRLHDGHRLFLKASAELA 48 (176)
Q Consensus 22 ~~vv~~G~FDgvH~GH~~ll~~a~~~~ 48 (176)
+.+.+-|.||-+|.||..+|.++.-.+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 415 DDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred chhHHHHhhcccccchhhhhhhhhhcc
Confidence 457889999999999999999987654
No 85
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=35.33 E-value=14 Score=27.27 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=9.7
Q ss_pred EEeCcCCcCCH
Q 030486 25 VLGGTFDRLHD 35 (176)
Q Consensus 25 v~~G~FDgvH~ 35 (176)
|++|.|||.|.
T Consensus 1 VaiGkfDG~~p 11 (136)
T PF14781_consen 1 VAIGKFDGVHP 11 (136)
T ss_pred CeEEEeCCCce
Confidence 57899999997
No 86
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=22.58 E-value=3.7e+02 Score=23.39 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=18.9
Q ss_pred eEEEeC---cCCcCCHHHHHHHHHHHHHhc
Q 030486 23 AVVLGG---TFDRLHDGHRLFLKASAELAR 49 (176)
Q Consensus 23 ~vv~~G---~FDgvH~GH~~ll~~a~~~~~ 49 (176)
..++.| |=+.+|+||.-.+..++.+.+
T Consensus 34 ~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~ 63 (410)
T PRK13354 34 LTLYLGFDPTAPSLHIGHLVPLMKLKRFQD 63 (410)
T ss_pred cEEEEcccCCCCCcchhhHHHHHHHHHHHH
Confidence 345555 335699999888888887654
No 87
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=20.26 E-value=71 Score=24.56 Aligned_cols=14 Identities=21% Similarity=0.244 Sum_probs=11.5
Q ss_pred eeehHHHHHHHHhh
Q 030486 156 KLSSSTLRKLEAEK 169 (176)
Q Consensus 156 ~ISST~IR~~i~~g 169 (176)
-+|||.|||-++..
T Consensus 84 f~SSTlikQTvRs~ 97 (192)
T PF11868_consen 84 FLSSTLIKQTVRSQ 97 (192)
T ss_pred EeeHHHHHHHHHHH
Confidence 48999999988753
Done!