Your job contains 1 sequence.
>030488
MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT
PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT
VKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPYY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030488
(176 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 666 2.0e-65 1
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 662 5.2e-65 1
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 364 2.0e-33 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 351 4.7e-32 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 340 6.9e-31 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 333 3.8e-30 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 333 3.8e-30 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 333 3.8e-30 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 332 4.9e-30 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 332 4.9e-30 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 332 4.9e-30 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 332 4.9e-30 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 332 4.9e-30 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 332 4.9e-30 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 332 4.9e-30 1
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 331 6.2e-30 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 328 1.3e-29 1
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 327 1.6e-29 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 317 1.9e-28 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 314 3.9e-28 1
UNIPROTKB|F1NWW9 - symbol:PABPN1 "Uncharacterized protein... 313 5.0e-28 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 306 2.8e-27 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 305 3.5e-27 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 305 3.5e-27 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 304 4.5e-27 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 282 9.4e-27 2
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 273 8.7e-24 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 265 6.1e-23 1
UNIPROTKB|A6NDY0 - symbol:PABPN1L "Embryonic polyadenylat... 254 9.0e-22 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 249 3.0e-21 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 248 3.9e-21 1
SGD|S000001440 - symbol:SGN1 "Cytoplasmic RNA-binding pro... 247 4.9e-21 1
WB|WBGene00017140 - symbol:EEED8.12 species:6239 "Caenorh... 244 1.0e-20 1
RGD|1562761 - symbol:Pabpn1l "poly(A)binding protein nucl... 243 1.3e-20 1
UNIPROTKB|G3V9K1 - symbol:Pabpn1l "Similar to embryonic p... 243 1.3e-20 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 241 2.1e-20 1
MGI|MGI:2685954 - symbol:Pabpn1l "poly(A)binding protein ... 241 2.1e-20 1
WB|WBGene00017135 - symbol:EEED8.4 species:6239 "Caenorha... 241 2.1e-20 1
UNIPROTKB|I3LCE0 - symbol:LOC100620185 "Uncharacterized p... 237 5.7e-20 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 226 8.3e-19 1
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 179 3.9e-13 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 179 4.5e-13 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 175 9.7e-13 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 173 2.0e-12 1
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 171 2.4e-12 1
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 170 4.2e-12 1
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 168 6.8e-12 1
UNIPROTKB|K7EJ88 - symbol:DAZAP1 "DAZ-associated protein ... 129 6.4e-11 2
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 138 8.4e-11 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 129 1.4e-10 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 129 1.6e-10 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 129 1.6e-10 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 129 1.6e-10 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 129 1.6e-10 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 129 1.6e-10 2
UNIPROTKB|F1N0I9 - symbol:SART3 "Uncharacterized protein"... 143 2.3e-10 2
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 138 2.6e-10 2
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 138 2.6e-10 2
TAIR|locus:2087685 - symbol:AT3G12640 species:3702 "Arabi... 156 2.8e-10 1
UNIPROTKB|F1P368 - symbol:DAZL "Deleted in azoospermia-li... 148 4.0e-10 1
UNIPROTKB|Q804A9 - symbol:DAZL "Deleted in azoospermia-li... 148 4.0e-10 1
UNIPROTKB|H0YJH9 - symbol:PABPN1 "Polyadenylate-binding p... 144 4.1e-10 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 144 4.1e-10 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 143 5.2e-10 1
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 146 1.6e-09 1
UNIPROTKB|E2QXZ2 - symbol:SART3 "Uncharacterized protein"... 143 1.7e-09 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 127 2.2e-09 2
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 137 2.6e-09 1
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 143 4.1e-09 1
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 127 4.2e-09 2
UNIPROTKB|F1RGA7 - symbol:SART3 "Uncharacterized protein"... 138 4.3e-09 2
ASPGD|ASPL0000005213 - symbol:AN6074 species:162425 "Emer... 139 4.3e-09 1
ZFIN|ZDB-GENE-030131-6724 - symbol:zgc:77304 "zgc:77304" ... 137 4.4e-09 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 133 5.9e-09 1
UNIPROTKB|H0YHU8 - symbol:SART3 "Squamous cell carcinoma ... 133 5.9e-09 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 141 6.2e-09 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 132 7.6e-09 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 132 7.6e-09 1
UNIPROTKB|B7ZKM0 - symbol:SART3 "Squamous cell carcinoma ... 133 1.0e-08 2
UNIPROTKB|Q15020 - symbol:SART3 "Squamous cell carcinoma ... 133 1.1e-08 2
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 138 1.6e-08 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 125 1.9e-08 2
TAIR|locus:2099931 - symbol:SCL30 "SC35-like splicing fac... 132 1.9e-08 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 138 1.9e-08 1
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 136 2.1e-08 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 128 2.2e-08 2
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 138 2.3e-08 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 138 2.3e-08 1
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 126 2.6e-08 2
UNIPROTKB|O57437 - symbol:dazl-a "Deleted in azoospermia-... 131 3.1e-08 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 126 3.3e-08 1
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 126 3.3e-08 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 128 3.5e-08 2
CGD|CAL0004922 - symbol:orf19.6766 species:5476 "Candida ... 133 3.8e-08 1
UNIPROTKB|Q5ADS5 - symbol:NOP13 "Putative uncharacterized... 133 3.8e-08 1
UNIPROTKB|D4A0P8 - symbol:Dazl "Protein Dazl" species:101... 130 3.9e-08 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 129 3.9e-08 1
UNIPROTKB|E2QWQ0 - symbol:RBM7 "Uncharacterized protein" ... 129 4.1e-08 1
RGD|619928 - symbol:Pabpn1 "poly(A) binding protein, nucl... 125 4.2e-08 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 128 4.4e-08 2
WARNING: Descriptions of 355 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 126/175 (72%), Positives = 144/175 (82%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
MK RLKEMEEEA ALR+M AKV EM + QDPA+ ++ +EEVD+RSV+VGNVDY+CT
Sbjct: 42 MKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACT 101
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 120
PEEVQ HFQ+CGTVNRVTI DKFGQPKG+AYVEF++ EAVQEAL LNESELHGRQLKV+
Sbjct: 102 PEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVS 161
Query: 121 VKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPY 175
KRTNVPGMKQ+ P R NP M Y+ R +PP+ YSPYGYGK PRFR PMRY PY
Sbjct: 162 PKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 127/175 (72%), Positives = 147/175 (84%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
MK RLKEME+EA ALR+M AKV EM + QDPA+ ++ A +EEVD+RSVFVGNVDY+CT
Sbjct: 46 MKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACT 104
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 120
PEEVQQHFQ+CGTV+RVTI TDKFGQPKG+AYVEF++ EAVQEAL LNESELHGRQLKV
Sbjct: 105 PEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVL 164
Query: 121 VKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPY 175
KRTNVPG+KQ R RR NP+M Y+ R + P++YSPYGYGK PRFR PMRY PY
Sbjct: 165 QKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 77/136 (56%), Positives = 97/136 (71%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
MK R+ EMEEEA LR+M A + ++ Q+ S +R++VDSRS+FVGNVDYS +
Sbjct: 34 MKKRVAEMEEEAAKLREMQASLDSQ---SQE-----LSTESRDDVDSRSIFVGNVDYSAS 85
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
PEE+Q HFQSCG++NRVTI DKF GQPKG+AYVEF + V +AL LNES GR +KV
Sbjct: 86 PEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALVLNESVFKGRNIKV 145
Query: 120 TVKRTNVPGMKQHRPR 135
+ KRTN PGM + R R
Sbjct: 146 SPKRTNYPGMSRGRGR 161
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 72/130 (55%), Positives = 91/130 (70%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
MK R+ EME EA LR+M A + + S ++ ++E++D+RS+FVGNVDY +
Sbjct: 30 MKRRVAEMESEAAKLREMQATLDQQSESLKE---------DKEDIDARSIFVGNVDYGAS 80
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
PEE+Q HFQSCG++NRVTI DKF GQPKGYAYVEF + V +AL LNES GR LKV
Sbjct: 81 PEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLNESVFRGRNLKV 140
Query: 120 TVKRTNVPGM 129
KRTN+PGM
Sbjct: 141 VPKRTNLPGM 150
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 74/136 (54%), Positives = 92/136 (67%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
MK R+ EME EA LR M ++ NE + ++ ++E +D++SV+VGNVDYS T
Sbjct: 17 MKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESIDAQSVYVGNVDYSVT 67
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
PEE+Q HF SCG+VNRVTI DKF G PKG+AY+EF + V AL LN S LH R LKV
Sbjct: 68 PEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKV 127
Query: 120 TVKRTNVPGMKQHRPR 135
T KRTNVPGM + R R
Sbjct: 128 TPKRTNVPGMSRGRGR 143
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 77/184 (41%), Positives = 103/184 (55%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 113 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDY 172
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 173 GATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQ 232
Query: 117 LKVTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMR 171
+KV KRTN PG+ R R Y SR + P G R R
Sbjct: 233 IKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRARATSW 292
Query: 172 YSPY 175
Y+PY
Sbjct: 293 YTPY 296
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 81/185 (43%), Positives = 104/185 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G SL + E D+RS++VGNVDY
Sbjct: 118 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDY 177
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 178 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 237
Query: 117 LKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
+KV KRTN PG+ R PR R SR F P G R R
Sbjct: 238 IKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSRFYSGFNSRPRGRIYRGRARATS 297
Query: 171 RYSPY 175
YSPY
Sbjct: 298 WYSPY 302
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 81/185 (43%), Positives = 104/185 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G SL + E D+RS++VGNVDY
Sbjct: 118 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDY 177
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 178 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 237
Query: 117 LKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
+KV KRTN PG+ R PR R SR F P G R R
Sbjct: 238 IKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRIYRGRARATS 297
Query: 171 RYSPY 175
YSPY
Sbjct: 298 WYSPY 302
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 80/185 (43%), Positives = 104/185 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 91 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 150
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 151 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 210
Query: 117 LKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
+KV KRTN PG+ R PR R SR F P G R R
Sbjct: 211 IKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATS 270
Query: 171 RYSPY 175
YSPY
Sbjct: 271 WYSPY 275
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 80/185 (43%), Positives = 104/185 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 181
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 182 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 241
Query: 117 LKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
+KV KRTN PG+ R PR R SR F P G R R
Sbjct: 242 IKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATS 301
Query: 171 RYSPY 175
YSPY
Sbjct: 302 WYSPY 306
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 80/185 (43%), Positives = 104/185 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 181
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 182 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 241
Query: 117 LKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
+KV KRTN PG+ R PR R SR F P G R R
Sbjct: 242 IKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATS 301
Query: 171 RYSPY 175
YSPY
Sbjct: 302 WYSPY 306
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 80/185 (43%), Positives = 104/185 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 181
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 182 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 241
Query: 117 LKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
+KV KRTN PG+ R PR R SR F P G R R
Sbjct: 242 IKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATS 301
Query: 171 RYSPY 175
YSPY
Sbjct: 302 WYSPY 306
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 80/185 (43%), Positives = 104/185 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 181
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 182 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 241
Query: 117 LKVTVKRTNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
+KV KRTN PG+ R PR R SR F P G R R
Sbjct: 242 IKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATS 301
Query: 171 RYSPY 175
YSPY
Sbjct: 302 WYSPY 306
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 76/184 (41%), Positives = 104/184 (56%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 113 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 172
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DK+ G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 173 GATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 232
Query: 117 LKVTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMR 171
+KV KRTN PG+ R R Y SR + P G R R+
Sbjct: 233 IKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRARVTSW 292
Query: 172 YSPY 175
Y+PY
Sbjct: 293 YTPY 296
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 77/184 (41%), Positives = 103/184 (55%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY
Sbjct: 112 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDY 171
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ
Sbjct: 172 GATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 231
Query: 117 LKVTVKRTNVPGMKQH-----RPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMR 171
+KV KRTN PG+ R R Y SR + P G R R
Sbjct: 232 IKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRVYRGRARATSW 291
Query: 172 YSPY 175
Y+PY
Sbjct: 292 YTPY 295
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 68/132 (51%), Positives = 92/132 (69%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGNVDYS 58
+K R+KEMEEEA ++QM ++V +MA S AA SL ++E+D+RSV+VGNVDY
Sbjct: 47 IKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYG 106
Query: 59 CTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 117
+ EE++ HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+ GRQ+
Sbjct: 107 ASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQI 166
Query: 118 KVTVKRTNVPGM 129
KV KRTN PG+
Sbjct: 167 KVMSKRTNRPGL 178
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 71/150 (47%), Positives = 97/150 (64%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGG--SSLANREEVDSRSVFVGNVDYS 58
+K R++EMEEEA L+++ +V +M + P AG S+ + E D RS++VGNVDY
Sbjct: 50 IKARVREMEEEAEKLKELQNEVEKQM-NLSPPPAGPVIMSIEEKIEADGRSIYVGNVDYG 108
Query: 59 CTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 117
T EE++ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ A+ L+ES GRQ+
Sbjct: 109 ATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQI 168
Query: 118 KVTVKRTNVPGMKQHRPRRPNPFMVYQSRG 147
KV KRTN PG+ R P ++SRG
Sbjct: 169 KVGAKRTNRPGIST--TDRGFPRARFRSRG 196
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 67/132 (50%), Positives = 91/132 (68%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMA--SKQDPAAGGSSLANREEVDSRSVFVGNVDYS 58
+K R+KEMEEEA ++QM ++V +MA S A SL ++E+D+RSV+VGNVDY
Sbjct: 47 IKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYG 106
Query: 59 CTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 117
+ EE++ HF CGT+NRVTI +K G PKG+AY+EF E V+ AL +NE+ GRQ+
Sbjct: 107 ASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQI 166
Query: 118 KVTVKRTNVPGM 129
KV KRTN PG+
Sbjct: 167 KVMSKRTNRPGL 178
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 79/181 (43%), Positives = 108/181 (59%)
Query: 5 LKEMEEEATALRQMHAK-VGNEMASKQDPAAGGSSLANREE---VDSRSVFVGNVDYSCT 60
L E+EEE L+ + + VG+ + + SL EE D++SV+VGNVDY T
Sbjct: 31 LNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGAT 90
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
EE++QHF CG+V+RVTI+ D+F G PKG+AYVEF + E +Q AL + +S L GRQ+KV
Sbjct: 91 AEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQIKV 150
Query: 120 TVKRTNVPGMKQHRPRRPNPFMVY--QSRGAIIPPFLYSPYGYGKIPRFRMPMR---YSP 174
KRTN PGM RP PF + RG +I ++Y+ G G PR R R ++P
Sbjct: 151 DPKRTNKPGMST--TNRP-PFRGRGGRGRGNVIVKYVYA--G-GFRPRGRGARRRPGFAP 204
Query: 175 Y 175
Y
Sbjct: 205 Y 205
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 77/178 (43%), Positives = 98/178 (55%)
Query: 8 MEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDYSCTPEEV 64
MEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY T EE+
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 65 QQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123
+ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ+KV KR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 124 TNVPGMKQ-HR--PR---RPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPMRYSPY 175
TN PG+ R PR R SR F P G R R YSPY
Sbjct: 121 TNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY 178
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 72/169 (42%), Positives = 100/169 (59%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
+K R++EMEEE L+++ + + + + + E D RS++VGNVDY T
Sbjct: 5 IKARVREMEEEDKRLKELQLEAESCLLMGSEAGLFQRMTEGKVEADQRSIYVGNVDYGGT 64
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
EE++ HF CG +NRVTI DKF G PKGYAY+EF Q +V+ A+ L+ES GR +KV
Sbjct: 65 AEELESHFNICGRINRVTILCDKFSGHPKGYAYIEFEQKSSVKAAVELDESIFRGRVIKV 124
Query: 120 TVKRTNVPGMKQ-HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 167
KRTN+PG+ R R F Q+RG +IP + Y YG G+ R R
Sbjct: 125 LPKRTNMPGISSTDRGGRRGHF---QARGGLIPRWGY--YG-GQPVRLR 167
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 62/126 (49%), Positives = 83/126 (65%)
Query: 8 MEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDYSCTPEEV 64
MEEEA L+++ +V +M P G S+ + E D+RS++VGNVDY T EE+
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 65 QQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123
+ HF CG+VNRVTI DKF G PKG+AY+EF E+V+ +L L+ES GRQ+KV KR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 124 TNVPGM 129
TN PG+
Sbjct: 121 TNRPGI 126
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 62/135 (45%), Positives = 92/135 (68%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
+K +L+EME+E LR++H+++ +E + + + + D+RS+++GNVDY T
Sbjct: 20 VKNKLEEMEQETAKLRELHSQLSSESTN----GVTHPTDEEKRDTDARSIYIGNVDYGST 75
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLK 118
P E+QQHF S G VNRVTI T+KF GQPKG+AY+EF ++AV +A+ L+ S RQLK
Sbjct: 76 PLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLK 135
Query: 119 VTVKRTNVPGMKQHR 133
V+ KRTN+PG+ R
Sbjct: 136 VSAKRTNIPGISVKR 150
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 62/135 (45%), Positives = 92/135 (68%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
+K +L+EME+E LR++H+++ +E + + + + D+RS+++GNVDY T
Sbjct: 20 VKNKLEEMEQETAKLRELHSQLSSESTN----GVTHPTDEEKRDTDARSIYIGNVDYGST 75
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLK 118
P E+QQHF S G VNRVTI T+KF GQPKG+AY+EF ++AV +A+ L+ S RQLK
Sbjct: 76 PLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLK 135
Query: 119 VTVKRTNVPGMKQHR 133
V+ KRTN+PG+ R
Sbjct: 136 VSAKRTNIPGISVKR 150
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 73/159 (45%), Positives = 96/159 (60%)
Query: 1 MKIRLKEMEEEATALRQMHAKV-----GNEMASKQDPAAGGSSLAN--REEVDSRSVFVG 53
MK R +EMEEEA L ++ + GN GG L N +EE+DSRSV+VG
Sbjct: 47 MKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQEEIDSRSVYVG 106
Query: 54 NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESEL 112
NVDY T +++ +FQSCGTVNR+TI +DK G PKG YVEF+ E++ A+ LN+S
Sbjct: 107 NVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFF 166
Query: 113 HGRQLKVTVKRTNVPG-MKQH-RPRRPNPFMVYQSRGAI 149
+ RQLK+T KRTN+P M+Q P F + RG I
Sbjct: 167 NERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGRGGI 205
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 282 (104.3 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 54/99 (54%), Positives = 74/99 (74%)
Query: 39 LANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQ 97
LA +EE+D RSV+VGNVDY TPE++++ F G + RVTI D+F G PKGYAY+EF Q
Sbjct: 19 LAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQ 78
Query: 98 SEAVQEAL-HLNESELHGRQLKVTVKRTNVPGMKQHRPR 135
+E+VQ+A+ L+ E GR+L+VT KRTN+PG ++ R R
Sbjct: 79 TESVQKAIDELHGKEFRGRELRVTAKRTNLPGFRRGRGR 117
Score = 34 (17.0 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 2 KIRLKEMEEE 11
K+R++E EEE
Sbjct: 5 KVRVQETEEE 14
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 58/146 (39%), Positives = 90/146 (61%)
Query: 1 MKIRLKEMEEEATALRQMHAK---VGNE----MASKQDPAAGGS---------SLANREE 44
+++R++EMEEEA L+ + + +G M + G+ S ++E
Sbjct: 30 IRMRVREMEEEAERLKGLSGQDKSIGVSTRPCMQTTHSKMTAGAYTEGPPQPLSAEEKKE 89
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQE 103
+D RSV+VGNVDY T ++++ HF SCG++NR+TI DKF G PKGYAY+EF + +V
Sbjct: 90 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDA 149
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGM 129
A+ ++E+ GR +KV KRTN+PG+
Sbjct: 150 AVAMDETVFRGRTIKVLPKRTNMPGI 175
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 58/146 (39%), Positives = 88/146 (60%)
Query: 1 MKIRLKEMEEEATALRQMHAK---VGNE----MASKQDPAAGGS---------SLANREE 44
+++R++EMEEEA L+ + + +G M G S ++E
Sbjct: 30 IRMRVREMEEEAERLKGLSGQDKSIGVSPRPCMKLIHSKMTAGEYTEGPPRPLSAEEKKE 89
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQE 103
+D RSV+VGNVDY T ++++ HF SCG++NR+TI DKF G PKGYAY+EF + +V
Sbjct: 90 IDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDA 149
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGM 129
A+ ++E+ GR +KV KRTN+PG+
Sbjct: 150 AVTMDETVFRGRTIKVLPKRTNMPGI 175
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 71/162 (43%), Positives = 89/162 (54%)
Query: 9 EEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHF 68
EEE TA Q+ + E P +G + E D RSV+VGNVDY + EE++ HF
Sbjct: 115 EEEGTAAGQL---LSPETVGC--PLSGTPE--EKVEADHRSVYVGNVDYGGSAEELEAHF 167
Query: 69 QSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVP 127
CG V+RVTI DKF G PKGYAY+EF +VQ A+ L++S GR +KV KRTN P
Sbjct: 168 SRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFP 227
Query: 128 GMKQ--HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 167
G+ R +P SRGA PF +S G PR R
Sbjct: 228 GISSTDRGGLRGHP----GSRGA---PFPHS--GLQGRPRLR 260
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 63/165 (38%), Positives = 89/165 (53%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
++ EE+A AL G ++ +++ + + E D RSV+VGNVDY T E++
Sbjct: 125 QQEEEDAGALL-----AGQLLSPEKEAGFPSDTPTEKVEADHRSVYVGNVDYEGTARELE 179
Query: 66 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+F CG ++RVTI DKF G PKGYAY+EF + Q A+ L+ S GR +KV KRT
Sbjct: 180 AYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELDNSVFRGRVIKVLPKRT 239
Query: 125 NVPGMKQ--HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 167
N PG+ R +P +RG PF +S + PRFR
Sbjct: 240 NFPGISSTDRGGLRGHP----SARGR---PFPHSSLERERGPRFR 277
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 47/93 (50%), Positives = 68/93 (73%)
Query: 39 LANREEVDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEF 95
+ + E +DS RS++VGNVDY T +E++ +F SCG VNRVTI ++F G PKG+AY+EF
Sbjct: 55 MTHEERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEF 114
Query: 96 LQSEAVQEALHLNESELHGRQLKVTVKRTNVPG 128
E+V+ A+ L+E+ GR +KV+ KRTN+PG
Sbjct: 115 SDRESVRTAMALDETLFRGRVIKVSPKRTNIPG 147
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 56/146 (38%), Positives = 84/146 (57%)
Query: 40 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQS 98
A++ E DSRS+FVGN+ TPE+++ HF+ CG + R+T+ D+ G PKGY Y+EF +S
Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF-ES 114
Query: 99 EAVQE-ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAII--P---- 151
A +E AL LN EL G+++ V+ KRTN+PG +H + F +Q ++ P
Sbjct: 115 PAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDT 174
Query: 152 -PFLYSPYGYGKIPRFRMPMRYSPYY 176
P+ Y PY + P + YY
Sbjct: 175 FPY-YPPYPPNQSPNQNFGYNKNNYY 199
>WB|WBGene00017140 [details] [associations]
symbol:EEED8.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15923 RefSeq:NP_495021.1 ProteinModelPortal:Q09301 SMR:Q09301
IntAct:Q09301 STRING:Q09301 EnsemblMetazoa:EEED8.12 GeneID:173922
KEGG:cel:CELE_EEED8.12 UCSC:EEED8.12 CTD:173922 WormBase:EEED8.12
InParanoid:Q09301 OMA:HESIFRD NextBio:881677 Uniprot:Q09301
Length = 197
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 57/144 (39%), Positives = 85/144 (59%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE-VDSRSVFVGNVDYSCTPEEVQ 65
E+E E+ L Q+ N+MA + AA ++ +D++SVF+GNVD++ T EEV+
Sbjct: 23 EIEAESAILEQIQ----NKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVE 78
Query: 66 QHFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+HF+ CG + R TI DKF + K +AY+EF S +++ AL +N S R + VT KRT
Sbjct: 79 EHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 138
Query: 125 NVPGMKQHRPRRPNPFMVYQSRGA 148
N+PGM H R + + RGA
Sbjct: 139 NIPGMG-HGVRGSSRGTFGRGRGA 161
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 47/87 (54%), Positives = 60/87 (68%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 102
E D RSV+VGNVDY + E++ +F CG ++RVTI DKF G PKGYAY+EF +VQ
Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQ 194
Query: 103 EALHLNESELHGRQLKVTVKRTNVPGM 129
A+ L+ES GR +KV KRTN PG+
Sbjct: 195 AAVRLDESTFRGRVIKVLPKRTNFPGI 221
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 47/87 (54%), Positives = 60/87 (68%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQ 102
E D RSV+VGNVDY + E++ +F CG ++RVTI DKF G PKGYAY+EF +VQ
Sbjct: 150 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQ 209
Query: 103 EALHLNESELHGRQLKVTVKRTNVPGM 129
A+ L+ES GR +KV KRTN PG+
Sbjct: 210 AAVRLDESTFRGRVIKVLPKRTNFPGI 236
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 45/89 (50%), Positives = 62/89 (69%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEA 100
+ E D RS++VGNVDY T +E++ +F CG ++RVTI DKF G PKGYAY+EF +
Sbjct: 153 KAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESS 212
Query: 101 VQEALHLNESELHGRQLKVTVKRTNVPGM 129
Q A+ L++S GR +KV KRTN+PG+
Sbjct: 213 AQAAVELDKSIFRGRVIKVLPKRTNLPGI 241
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 57/128 (44%), Positives = 76/128 (59%)
Query: 3 IRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
++ K EEE +RQ+ + E D +S N E D RSVFVGNVDY +
Sbjct: 105 VQRKATEEERAEVRQL---LSPETV---DCFFSRTSKEN-VEADHRSVFVGNVDYGGSAA 157
Query: 63 EVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121
E++ +F CG ++RVTI DKF G PKGYAY+EF +V+ A+ L+ES GR +KV
Sbjct: 158 ELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLP 217
Query: 122 KRTNVPGM 129
KRTN PG+
Sbjct: 218 KRTNFPGI 225
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 55/144 (38%), Positives = 86/144 (59%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREE-VDSRSVFVGNVDYSCTPEEVQ 65
E+E E+ L+Q+ N+MA + AA ++ +D++SVF+GNVD++ T EE++
Sbjct: 17 EIEAESAILQQIQ----NKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIE 72
Query: 66 QHFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+HF+ CG + + TI DKF + K +AY+EF S +++ AL +N S R + VT KRT
Sbjct: 73 EHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRT 132
Query: 125 NVPGMKQHRPRRPNPFMVYQSRGA 148
N+PGM H R + + RGA
Sbjct: 133 NIPGMG-HGVRGSSRGTFGRGRGA 155
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 61/165 (36%), Positives = 87/165 (52%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
++ EE+A AL G ++ +++ + + E D RSV+VGNVDY T E++
Sbjct: 125 QQEEEDAGALL-----AGQLLSPEKEAGFPSDTPTEKVEADHRSVYVGNVDYEGTARELE 179
Query: 66 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+F CG ++RVTI DKF G PKGYAY+EF + Q + L+ S G +KV KRT
Sbjct: 180 AYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAPVELDNSVFRGPVIKVLPKRT 239
Query: 125 NVPGMKQ--HRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFR 167
N PG+ R +P +RG PF +S + PRFR
Sbjct: 240 NFPGISSTDRGGLRGHP----SARGR---PFPHSSLERERGPRFR 277
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 46/89 (51%), Positives = 63/89 (70%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEA 100
+E+ D+RSV+VGNVD+ T E+++HF CG V RVTI DKF G K +A+VEF + E+
Sbjct: 40 QEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLES 99
Query: 101 VQEALHLNESELHGRQLKVTVKRTNVPGM 129
VQ AL L+ + R++ VT+KRTN PGM
Sbjct: 100 VQLALVLSGTMFRNRKIMVTLKRTNKPGM 128
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 179 (68.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 50/136 (36%), Positives = 71/136 (52%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
KE AL++ A++ + + D A+ SS D RSVFVGN+ Y ++
Sbjct: 229 KEESAATQALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAIE 282
Query: 66 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+HF CG++ V I DK G KG+ YV F +++V AL LN SEL GR+L+V ++
Sbjct: 283 KHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV-MRSV 341
Query: 125 NVPGMKQHR--PRRPN 138
N KQ PR N
Sbjct: 342 NKEKFKQQNSNPRLKN 357
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 179 (68.1 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 50/136 (36%), Positives = 71/136 (52%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
KE AL++ A++ + + D A+ SS D RSVFVGN+ Y ++
Sbjct: 251 KEESAATQALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAIE 304
Query: 66 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+HF CG++ V I DK G KG+ YV F +++V AL LN SEL GR+L+V ++
Sbjct: 305 KHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV-MRSV 363
Query: 125 NVPGMKQHR--PRRPN 138
N KQ PR N
Sbjct: 364 NKEKFKQQNSNPRLKN 379
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 175 (66.7 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 50/134 (37%), Positives = 72/134 (53%)
Query: 9 EEEATALRQMHAKV-GNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQH 67
+EE A++ ++ K G E+AS +S N + RSVF+GN+ Y + V++H
Sbjct: 213 KEERDAVKALNYKRNGTEVASGFHIRVDSAS-KNSLHDNKRSVFLGNLAYDISDSAVREH 271
Query: 68 FQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT--VKRT 124
F CG V V I D+ G KG+ YV F ++AV AL LN S+L GR+L+V V++
Sbjct: 272 FADCGDVVAVRIVRDRQSGMGKGFGYVLFENTDAVHLALKLNNSDLMGRKLRVKRCVEKG 331
Query: 125 NVPGMKQ-HRPRRP 137
P RPR P
Sbjct: 332 RAPQRSTTSRPRGP 345
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 173 (66.0 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 48/127 (37%), Positives = 69/127 (54%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
KE A AL++ A++ + D A S A+R D RSVFVGN+ Y ++
Sbjct: 249 KEERAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYRVDESALE 302
Query: 66 QHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V ++
Sbjct: 303 EHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-MRSV 361
Query: 125 NVPGMKQ 131
N +KQ
Sbjct: 362 NKEKLKQ 368
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 171 (65.3 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 47/127 (37%), Positives = 69/127 (54%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
K+ A AL++ A++ + D A S A+R D RSVFVGN+ Y ++
Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLA---SETASR---DKRSVFVGNLPYKIEDSALE 308
Query: 66 QHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
+HF CG++ V I R G +G+ YV F ++AV AL LN SEL GR+L+V ++
Sbjct: 309 EHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-MRSV 367
Query: 125 NVPGMKQ 131
N +KQ
Sbjct: 368 NKEKLKQ 374
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 170 (64.9 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 47/124 (37%), Positives = 69/124 (55%)
Query: 9 EEEAT-ALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQH 67
E AT AL++ A++ + + D A+ SS D RSVFVGN+ Y V++H
Sbjct: 253 ESSATKALKRNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAVEEH 306
Query: 68 FQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNV 126
F CG++ V I D+ G +G+ YV F ++AV AL LN SEL GR+L+V ++ N
Sbjct: 307 FLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV-MRSVNK 365
Query: 127 PGMK 130
+K
Sbjct: 366 EKLK 369
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 168 (64.2 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 49/133 (36%), Positives = 70/133 (52%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
K+ A AL + A++ + + D A+ SS D RSVFVGN+ Y V+
Sbjct: 247 KDESAAAKALERNGAQIADGFRIRVDLASETSSR------DKRSVFVGNLPYKVEESAVE 300
Query: 66 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT---- 120
+HF CG+V V I D G +G+ YV F ++AV AL LN SEL GR+L+V
Sbjct: 301 KHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSIH 360
Query: 121 ---VKRTNVPGMK 130
+K+ + PG+K
Sbjct: 361 KEKLKQNSNPGLK 373
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 129 (50.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 40 PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 99
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 100 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQAPGQP 144
Score = 47 (21.6 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 199 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 233
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 138 (53.6 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 37 SSLANREE-VDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 92
SSLA R+ +D RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 93 VEFLQSEAVQEAL-HLNESELHGRQLKV--TVKRTNVPGMKQHRPRRP 137
E+ E A+ +LN E GR L+V N +K P P
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 46 (21.3 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 129 MKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMP 169
+ Q P P P + + IPP + +P G P+ MP
Sbjct: 223 LNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPPQGPMP 263
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 129 (50.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 87 PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 146
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 147 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQAPGQP 191
Score = 47 (21.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 246 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 280
Score = 46 (21.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 151 PPFLYSPYGYGK 162
P F YS YGYG+
Sbjct: 332 PDFPYSQYGYGQ 343
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 129 (50.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 97 PKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 156
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 157 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKNQAPGQP 201
Score = 96 (38.9 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 40 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQS 98
A +E+ +FVG +D+S T E ++ +F G V I DK Q +G+ +V+F
Sbjct: 4 AGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 99 EAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPR 135
V L L GR + K GM+ R R
Sbjct: 62 NCVGTVLASRPHTLDGRN--IDPKPCTPRGMQPERTR 96
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 290
Score = 42 (19.8 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 151 PPFLYSPYGYGK 162
P F Y YGYG+
Sbjct: 342 PDFPYGQYGYGQ 353
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 129 (50.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 97 PKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 156
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 157 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKNQAPGQP 201
Score = 96 (38.9 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 40 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQS 98
A +E+ +FVG +D+S T E ++ +F G V I DK Q +G+ +V+F
Sbjct: 4 AGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 99 EAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPR 135
V L L GR + K GM+ R R
Sbjct: 62 NCVGTVLASRPHTLDGRN--IDPKPCTPRGMQPERTR 96
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 290
Score = 42 (19.8 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 151 PPFLYSPYGYGK 162
P F Y YGYG+
Sbjct: 342 PDFPYGQYGYGQ 353
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 129 (50.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 97 PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 156
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 157 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQAPGQP 201
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 290
Score = 46 (21.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 151 PPFLYSPYGYGK 162
P F YS YGYG+
Sbjct: 342 PDFPYSQYGYGQ 353
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 129 (50.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 97 PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 156
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 157 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQAPGQP 201
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 290
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 129 (50.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 97 PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 156
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 157 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQAPGQP 201
Score = 47 (21.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 256 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 290
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 143 (55.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 37/126 (29%), Positives = 67/126 (53%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +FV + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 496 LEKHKLFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQA 555
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 163
L ++ + +KV + +N P K P +P S A++P +Y G G+
Sbjct: 556 VLKMDGMTIRENVIKVAI--SNPPQRKV--PEKPEARKAPGS--ALLPRQVYGARGKGRT 609
Query: 164 PRFRMP 169
+P
Sbjct: 610 QLSLLP 615
Score = 37 (18.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQDPAA 34
R+K E+EA +Q KV ++ + A
Sbjct: 278 RIKAAEKEAALAQQEEEKVEQRKRARAEKKA 308
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 138 (53.6 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 37 SSLANREE-VDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 92
SSLA R+ +D RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 93 VEFLQSEAVQEAL-HLNESELHGRQLKV--TVKRTNVPGMKQHRPRRP 137
E+ E A+ +LN E GR L+V N +K P P
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 41 (19.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 129 MKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 164
+ Q P P P + + IPP + +P G IP
Sbjct: 229 LNQQNPPAPQPQHLARRPVKDIPPLMQTPI-QGGIP 263
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 138 (53.6 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 37 SSLANREE-VDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 92
SSLA R+ +D RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 93 VEFLQSEAVQEAL-HLNESELHGRQLKV--TVKRTNVPGMKQHRPRRP 137
E+ E A+ +LN E GR L+V N +K P P
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
Score = 41 (19.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 129 MKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIP 164
+ Q P P P + + IPP + +P G IP
Sbjct: 229 LNQQNPPAPQPQHLARRPVKDIPPLMQTPI-QGGIP 263
>TAIR|locus:2087685 [details] [associations]
symbol:AT3G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
IPI:IPI01019808 RefSeq:NP_566430.3 UniGene:At.42987
UniGene:At.63536 ProteinModelPortal:F4J9U9 SMR:F4J9U9 PRIDE:F4J9U9
EnsemblPlants:AT3G12640.1 GeneID:820444 KEGG:ath:AT3G12640
OMA:LVEYVIV Uniprot:F4J9U9
Length = 638
Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 38/107 (35%), Positives = 56/107 (52%)
Query: 20 AKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 79
A V E + + S+ E+ SR++FV NV + T + + +HF G V + I
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 511
Query: 80 RTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 125
TD GQP G AY+EF + EA + AL L+ + R LK+ VK +N
Sbjct: 512 VTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI-VKGSN 557
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 148 (57.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLN 108
+VFVG +D E++ +F+ GTV V I TD+ G KGY +V FL + VQ+ + +
Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95
Query: 109 ESELHGRQLKVTV---KRTNVPGMKQHRPRRPNP 139
+ +HG++LK+ K+ N+ Q RP NP
Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPRPLAFNP 129
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 148 (57.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLN 108
+VFVG +D E++ +F+ GTV V I TD+ G KGY +V FL + VQ+ + +
Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95
Query: 109 ESELHGRQLKVTV---KRTNVPGMKQHRPRRPNP 139
+ +HG++LK+ K+ N+ Q RP NP
Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPRPLAFNP 129
>UNIPROTKB|H0YJH9 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HGNC:HGNC:8565 Ensembl:ENST00000555295 Uniprot:H0YJH9
Length = 96
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 78 TIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGM 129
TI DKF G PKG+AY+EF E+V+ +L L+ES GRQ+KV KRTN PG+
Sbjct: 2 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 54
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH- 106
SV+VGN + T EE+ F S G +N V I D+ G+P+G+A++EF + + Q A+
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 107 LNESELHGRQLKVTV 121
+N +E +GR L+V +
Sbjct: 66 MNGAEFNGRPLRVNL 80
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH- 106
SV+VGNV Y T EE+ +F + G VN V I D+ G+P+G+A+VEF + Q A+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 107 LNESELHGRQLKV 119
LN +GR L+V
Sbjct: 67 LNGVAFNGRNLRV 79
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 146 (56.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALH 106
RS+FVGN+ Y + +Q HFQ CG + V + D+ G KG+ YV F ++V AL
Sbjct: 252 RSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALK 311
Query: 107 LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNP 139
LN S L +Q K+ VKR+ +K+ + ++ P
Sbjct: 312 LNGSTL--QQRKIRVKRS----VKKEKEKKTPP 338
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 143 (55.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 36/126 (28%), Positives = 66/126 (52%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +FV + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 917 LEKHKLFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQA 976
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 163
L ++ + +KV + +N P K P +P G ++P +Y G G+
Sbjct: 977 VLKMDGMTIKENVIKVAI--SNPPQRKV--PEKPETKKA--PGGGMVPRQIYGARGKGRT 1030
Query: 164 PRFRMP 169
+P
Sbjct: 1031 QLCLLP 1036
Score = 123 (48.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 46 DSRSVFVGNVDYSCTPEEVQQH--FQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
DS +VFV N+ YS EV+ F++CG V + G +GY YVEF + ++ +
Sbjct: 821 DSITVFVSNLPYSMDEPEVKLRPLFEACGEVTEIRPIFSNRGDFRGYCYVEFKEEKSALQ 880
Query: 104 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 133
AL L+ + GR + V+ V ++ P K R
Sbjct: 881 ALELDRKTVEGRPMFVSPCVDKSKHPDFKVFR 912
Score = 34 (17.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 IRLKEMEEEATALRQMHAKV 22
IRL +E E T +R K+
Sbjct: 238 IRLLRLEGELTKVRMARQKM 257
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 127 (49.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEAL 105
S +FVG + ++C E++++F+ G V V + D Q P+G+ ++ F ++V +A+
Sbjct: 111 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 170
Query: 106 HLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
+++ ++ G+ KV VKR K P +P
Sbjct: 171 NMHFHDIMGK--KVEVKRAEPRDSKNQAPGQP 200
Score = 96 (38.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 40 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQS 98
A +E+ +FVG +D+S T E ++ +F G V I DK Q +G+ +V+F
Sbjct: 4 AGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 99 EAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPR 135
V L L GR + K GM+ R R
Sbjct: 62 NCVGTVLASRPHTLDGRN--IDPKPCTPRGMQPERTR 96
Score = 47 (21.6 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P+F
Sbjct: 255 PPPPPPFTSYIVSTPPGGFPPPQGF-PQGYGAPPQF 289
Score = 42 (19.8 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 151 PPFLYSPYGYGK 162
P F Y YGYG+
Sbjct: 341 PDFPYGQYGYGQ 352
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 137 (53.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/118 (27%), Positives = 61/118 (51%)
Query: 22 VGNEMASKQDPAAGGSSLANREEVD-SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIR 80
VG +AS+ G + R + S +FVG + ++C E++++F+ G V V +
Sbjct: 64 VGTVLASRPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 123
Query: 81 TDKFGQ-PKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
D Q P+G+ ++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 124 YDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQAPGQP 179
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 143 (55.4 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 38/108 (35%), Positives = 56/108 (51%)
Query: 30 QDPAAGGSSLANREEVDS-RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI-RTDKFGQP 87
QD S+A+ D RS+FVGN+D+ E + +HF+ CG + V I R K
Sbjct: 260 QDHHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMG 319
Query: 88 KGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPR 135
KG+AYV+F ++V +AL LNE + + K + T P K + R
Sbjct: 320 KGFAYVQFKDLQSVNKALLLNEKPMKSQ--KQEDENTKKPTKKARKLR 365
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 127 (49.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P G + + S +FVG + ++C E++++F+ G V V + D Q P+G+
Sbjct: 87 PKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 146
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
++ F ++V +A++++ ++ G+ KV VKR K P P
Sbjct: 147 GFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQTPGPP 191
Score = 44 (20.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 134 PRRPNPFMVY---QSRGAIIPPFLYSPYGYGKIPRF 166
P P PF Y G PP + P GYG P F
Sbjct: 246 PPPPPPFASYIVSTPPGGFPPPQGF-PQGYGTPPPF 280
Score = 42 (19.8 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 151 PPFLYSPYGYGK 162
P F YS +GYG+
Sbjct: 334 PEFPYSQFGYGQ 345
>UNIPROTKB|F1RGA7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 OMA:SQAVMKM EMBL:CU424486
RefSeq:XP_001926720.3 UniGene:Ssc.37664 Ensembl:ENSSSCT00000010898
GeneID:100152586 KEGG:ssc:100152586 Uniprot:F1RGA7
Length = 959
Score = 138 (53.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 35/126 (27%), Positives = 66/126 (52%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 794 LEKHKLFISGLPFSCTREELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQA 853
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 163
L ++ + +KV + +N P K P +P G ++P +Y G G+
Sbjct: 854 VLKMDGMTVKENIIKVAI--SNPPQRKF--PEKPEARKA--PGGPLVPRQIYGARGKGRT 907
Query: 164 PRFRMP 169
+P
Sbjct: 908 QLSLLP 913
Score = 116 (45.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 46 DSRSVFVGNVDYSCT-PEEVQQH-FQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
D +VFV N+ YS P V + F++CG V + G +GY YVEF + A Q
Sbjct: 698 DGITVFVSNLPYSLEEPATVLRPLFEACGDVVEIRPIFSNRGDFRGYCYVEFKEEAAAQR 757
Query: 104 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 133
AL L+ + GR + V+ V ++ P K R
Sbjct: 758 ALELDRKSVEGRPMFVSPCVDKSKNPDFKVFR 789
Score = 34 (17.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 IRLKEMEEEATALRQMHAKV 22
IRL +E E T +R K+
Sbjct: 120 IRLLRLEGELTKVRMARQKM 139
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 139 (54.0 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEAL- 105
+SVF+GN+ Y+ T E+V+ + GTV + + + + G+PKGY + +F ++A A+
Sbjct: 8 KSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVR 67
Query: 106 HLNESELHGRQLKVTVKRTN 125
+LN+ E+ GR+++V N
Sbjct: 68 NLNDYEIMGRKIRVDWPHNN 87
>ZFIN|ZDB-GENE-030131-6724 [details] [associations]
symbol:zgc:77304 "zgc:77304" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6724 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG009324 KO:K13188 HSSP:O08583
EMBL:BC049507 IPI:IPI00496411 RefSeq:NP_956219.1 UniGene:Dr.75468
ProteinModelPortal:Q7ZWA5 SMR:Q7ZWA5 STRING:Q7ZWA5 GeneID:334784
KEGG:dre:334784 NextBio:20810542 ArrayExpress:Q7ZWA5 Uniprot:Q7ZWA5
Length = 252
Score = 137 (53.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 44/137 (32%), Positives = 63/137 (45%)
Query: 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQ 102
+E D R++FVGN+D T E + + F G + +V I + G+ K +A+V F +V
Sbjct: 5 DEAD-RTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNEGKSKLFAFVNFKHEVSVP 63
Query: 103 EALHL-NESELHGRQLKVTVK----RTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSP 157
AL+L N LHGRQL + K N G + P+P RG P + SP
Sbjct: 64 YALNLLNGIRLHGRQLNIKFKTGSSHINQEGKSPANSQNPSPANTPGHRGGRTPEQMGSP 123
Query: 158 YGYGKIPRFRMPMRYSP 174
Y + P SP
Sbjct: 124 -SYSPPQHMQRPFS-SP 138
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 38/112 (33%), Positives = 60/112 (53%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 104 ALHL-NESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFL 154
A++L N +L+GR +K+ + +P K PN + Q+ +PP L
Sbjct: 66 AMNLLNGIKLYGRPIKIQFRSVVMPH-KMSVCHIPNIMLEIQA----LPPHL 112
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/108 (27%), Positives = 60/108 (55%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 37 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 96
Query: 104 ALHLNESELHGRQLKVTVK---RTNVPGMKQHRPRRPNPFMVYQSRGA 148
+ ++ + +KV + + VP + R P ++ Q+ GA
Sbjct: 97 VMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGA 144
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 141 (54.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 32 PAAGGSSLANREE-VDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQP 87
P SSLA R+ +D RSVFVGN+ Y T E+++ F G+V + D+ G+P
Sbjct: 1 PPGAMSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKP 60
Query: 88 KGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV--TVKRTNVPGMKQHRPRRP 137
KGY + E+ E A+ +LN E GR L+V N +K P P
Sbjct: 61 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 113
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-H 106
SV+VGN + T +++ +F G V+ V I D+ G+P+G+A+VEF + A Q A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 107 LNESELHGRQLKVTV 121
N + +GR L+V +
Sbjct: 65 FNGVDFNGRALRVNL 79
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-H 106
SV+VGN + T +++ +F G V+ V I D+ G+P+G+A+VEF + A Q A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 107 LNESELHGRQLKVTV 121
N + +GR L+V +
Sbjct: 65 FNGVDFNGRALRVNL 79
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 133 (51.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/108 (27%), Positives = 60/108 (55%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 762 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 821
Query: 104 ALHLNESELHGRQLKVTVK---RTNVPGMKQHRPRRPNPFMVYQSRGA 148
+ ++ + +KV + + VP + R P ++ Q+ GA
Sbjct: 822 VMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGA 869
Score = 115 (45.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 46 DSRSVFVGNVDYSCT-PE-EVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
DS +VFV N+ YS P+ +++ F++CG V ++ G +GY YVEF + ++ +
Sbjct: 666 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 725
Query: 104 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 133
AL ++ + GR + V+ V ++ P K R
Sbjct: 726 ALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFR 757
Score = 35 (17.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQDPAA 34
R+K E+EA ++Q K ++ + A
Sbjct: 544 RMKAAEKEAALVQQEEEKAEQRKRARAEKKA 574
Score = 34 (17.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 IRLKEMEEEATALRQMHAKV 22
IRL +E E T +R K+
Sbjct: 119 IRLLRLEGELTKVRMARQKM 138
>UNIPROTKB|Q15020 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 EMBL:AB020880 GO:GO:0043231
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 EMBL:AF387506 EMBL:D63879 EMBL:AK290209
EMBL:BC032601 EMBL:BC041638 EMBL:BC093784 EMBL:BC103706
EMBL:BC111983 IPI:IPI00006025 IPI:IPI00383381 IPI:IPI01022779
RefSeq:NP_055521.1 UniGene:Hs.584842 PDB:2DO4 PDBsum:2DO4
ProteinModelPortal:Q15020 SMR:Q15020 IntAct:Q15020
MINT:MINT-2867335 STRING:Q15020 PhosphoSite:Q15020 DMDM:74762140
PaxDb:Q15020 PeptideAtlas:Q15020 PRIDE:Q15020
Ensembl:ENST00000228284 Ensembl:ENST00000546611
Ensembl:ENST00000546728 GeneID:9733 KEGG:hsa:9733 UCSC:uc001tmy.1
UCSC:uc001tnb.3 CTD:9733 GeneCards:GC12M108915 HGNC:HGNC:16860
HPA:HPA044322 MIM:175900 MIM:611684 neXtProt:NX_Q15020
Orphanet:79152 PharmGKB:PA34948 HOGENOM:HOG000063708
HOVERGEN:HBG053888 InParanoid:Q15020 OMA:SQAVMKM OrthoDB:EOG4RXXZG
PhylomeDB:Q15020 ChiTaRS:SART3 EvolutionaryTrace:Q15020
GenomeRNAi:9733 NextBio:36616 ArrayExpress:Q15020 Bgee:Q15020
CleanEx:HS_SART3 Genevestigator:Q15020 GermOnline:ENSG00000075856
Uniprot:Q15020
Length = 963
Score = 133 (51.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/108 (27%), Positives = 60/108 (55%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE+++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 798 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857
Query: 104 ALHLNESELHGRQLKVTVK---RTNVPGMKQHRPRRPNPFMVYQSRGA 148
+ ++ + +KV + + VP + R P ++ Q+ GA
Sbjct: 858 VMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGA 905
Score = 115 (45.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 46 DSRSVFVGNVDYSCT-PE-EVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
DS +VFV N+ YS P+ +++ F++CG V ++ G +GY YVEF + ++ +
Sbjct: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 761
Query: 104 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 133
AL ++ + GR + V+ V ++ P K R
Sbjct: 762 ALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFR 793
Score = 35 (17.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQDPAA 34
R+K E+EA ++Q K ++ + A
Sbjct: 580 RMKAAEKEAALVQQEEEKAEQRKRARAEKKA 610
Score = 34 (17.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 IRLKEMEEEATALRQMHAKV 22
IRL +E E T +R K+
Sbjct: 119 IRLLRLEGELTKVRMARQKM 138
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 45/136 (33%), Positives = 62/136 (45%)
Query: 33 AAGGSSLANREEVDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKG 89
AA ++ A VD RSVFVGN+ Y T E+++ F G V + D+ G+PKG
Sbjct: 7 AAAAAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKG 66
Query: 90 YAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGA 148
Y + E+ E A+ +LN E GR L+V N K + GA
Sbjct: 67 YGFCEYQDQETALSAMRNLNGREFSGRALRVD----NAASEKNKEELKS------LGTGA 116
Query: 149 IIPPFLYSPYGYGKIP 164
P + SPYG G +P
Sbjct: 117 ---PIIESPYGDGCMP 129
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 125 (49.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 32/109 (29%), Positives = 56/109 (51%)
Query: 32 PAAGGSSLANREEVDSRS--VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PK 88
P G R E +SRS +FVG + ++C E++++F G V V + D Q P+
Sbjct: 97 PREGWQQKEPRTE-NSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPR 155
Query: 89 GYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
G+ ++ F ++V +A++++ ++ G+ KV VKR K P P
Sbjct: 156 GFGFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQTPGPP 202
Score = 44 (20.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 139 PFMVYQSRGAIIPPFLYSPYGYGKIPRF 166
PF+V + G PP + P GY P F
Sbjct: 263 PFLVSTTPGPFPPPQGFPP-GYATPPPF 289
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 35 GGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYV 93
GG R S+ V N+ C PEE+++ F+ G V V I D + GQP+G+A+V
Sbjct: 34 GGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFV 93
Query: 94 EFLQSEAVQEALH-LNESELHGRQLKVTV 121
EF+ + EA +N GR++ V V
Sbjct: 94 EFVDAYDAGEAQRSMNRRSFAGREITVVV 122
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 37 SSLANREE-VDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 92
SSLA R+ +D RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 93 VEFLQSEAVQEAL-HLNESELHGRQLKV--TVKRTNVPGMKQHRPRRP 137
E+ E A+ +LN E GR L+V N +K P P
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 136 (52.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 39/130 (30%), Positives = 64/130 (49%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDS---RSVFVGNVDYSCTPEE 63
E+ ++A AL K + + A +++ D R++FVG++ YS T E+
Sbjct: 216 EIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEEQ 275
Query: 64 VQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123
+++ F SCG ++ + D KG AYV F + +AV AL LN++ L R + V +
Sbjct: 276 LREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQ 335
Query: 124 TNVPGMKQHR 133
G KQ R
Sbjct: 336 VKKLGAKQVR 345
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 128 (50.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 37 SSLANREE-VDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 92
SSLA R+ +D RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 93 VEFLQSEAVQEAL-HLNESELHGRQLKV--TVKRTNVPGMKQHRPRRP 137
E+ E A+ +LN E GR L+V N +K P P
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 37 SSLANREE-VDS--RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAY 92
SSLA R+ +D RSVFVGN+ Y T E+++ F G+V + D+ G+PKGY +
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGF 61
Query: 93 VEFLQSEAVQEAL-HLNESELHGRQLKV--TVKRTNVPGMKQHRPRRP 137
E+ E A+ +LN E GR L+V N +K P P
Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 126 (49.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 32/105 (30%), Positives = 58/105 (55%)
Query: 16 RQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN 75
+Q+ + GN S+ ++GG + N+ ++ +FVG + + T EE +Q+F+ G V
Sbjct: 86 QQVSGRTGNLNTSR---SSGGDAY-NK----TKKIFVGGLPPTLTDEEFRQYFEVYGPVT 137
Query: 76 RVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
V I D+ +P+G+ +V F +AV LH +L G+Q++V
Sbjct: 138 DVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEV 182
Score = 42 (19.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 138 NPFMVYQSRGAIIPPFLYSPYGYG 161
N F+ +QS G +P + S YG G
Sbjct: 224 NRFLQHQSVGNGLPSYGSSGYGAG 247
>UNIPROTKB|O57437 [details] [associations]
symbol:dazl-a "Deleted in azoospermia-like-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0008354 "germ cell migration" evidence=IMP] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0032019
"mitochondrial cloud" evidence=IDA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283
GO:GO:0003723 GO:GO:0008494 GO:GO:0007281 GO:GO:0045948
GO:GO:0045495 GO:GO:0008354 EMBL:AF017778 RefSeq:NP_001081772.1
UniGene:Xl.311 HSSP:Q15427 ProteinModelPortal:O57437 GeneID:398041
KEGG:xla:398041 CTD:1618 Xenbase:XB-GENE-6078612 HOVERGEN:HBG000573
GO:GO:0032019 Uniprot:O57437
Length = 286
Score = 131 (51.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 24 NEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK 83
N A+ ++ A + E+ +VFVG +D + E++ F G V V I TD+
Sbjct: 9 NYAATAEEEAVNQGFVLPEGEIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDR 68
Query: 84 FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRP---RRPNPF 140
G KGY ++ F VQ+ + ++ HG++LK+ + Q RP P PF
Sbjct: 69 TGVSKGYGFISFSDEVDVQKIVK-SQISFHGKKLKLGPAIRKICTYVQPRPVVLSHPTPF 127
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 104 ALHL-NESELHGRQLKV 119
A++L N +L+GR +K+
Sbjct: 66 AMNLLNGIKLYGRPIKI 82
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 4 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 62
Query: 104 ALHL-NESELHGRQLKV 119
A++L N +L+GR +K+
Sbjct: 63 AMNLLNGIKLYGRPIKI 79
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 128 (50.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 23 GNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRT- 81
G SK D G N SR +FVGN+ + T + +++HF+ CG + ++ + T
Sbjct: 192 GRPEQSKSDATQSGG--INSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATF 249
Query: 82 DKFGQPKGYAYVEFLQSEAVQEALHLNESE-LHGRQLKVTVKRTNVPGMKQHRPRRPNPF 140
G+ KG+A+++F E AL ++ L R+L++ + RP+R N F
Sbjct: 250 QDTGKCKGFAFIDFKDEEGATTALKSKLTKMLINRKLRMEYGEDR----SKRRPKRANDF 305
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 23 GNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRT- 81
G SK D G N SR +FVGN+ + T + +++HF+ CG + ++ + T
Sbjct: 192 GRPEQSKSDATQSGG--INSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATF 249
Query: 82 DKFGQPKGYAYVEFLQSEAVQEALHLNESE-LHGRQLKVTVKRTNVPGMKQHRPRRPNPF 140
G+ KG+A+++F E AL ++ L R+L++ + RP+R N F
Sbjct: 250 QDTGKCKGFAFIDFKDEEGATTALKSKLTKMLINRKLRMEYGEDR----SKRRPKRANDF 305
>UNIPROTKB|D4A0P8 [details] [associations]
symbol:Dazl "Protein Dazl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063480 CTD:1618 EMBL:CH473987
IPI:IPI00870381 RefSeq:NP_001102884.1 UniGene:Rn.136288
Ensembl:ENSRNOT00000066517 GeneID:680486 KEGG:rno:680486
NextBio:718813 Uniprot:D4A0P8
Length = 281
Score = 130 (50.8 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 37/132 (28%), Positives = 62/132 (46%)
Query: 12 ATALRQMHAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQS 70
AT ++ V E +++ A E ++ +VFVG +D E++ F
Sbjct: 3 ATTSEAPNSAVSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFAR 62
Query: 71 CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPG 128
G+V V I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+
Sbjct: 63 YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCT 121
Query: 129 MK-QHRPRRPNP 139
Q RP NP
Sbjct: 122 YHVQPRPLIFNP 133
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 129 (50.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 31 DPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKG 89
DP G N + S +FVG + ++C E++++F+ G V V + D Q P+G
Sbjct: 126 DPKQKGPRSDNSK---SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRG 182
Query: 90 YAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRP 137
+ ++ F ++V +A++++ ++ G+ KV VKR K P +P
Sbjct: 183 FGFITFEDEQSVDQAVNMHFHDIMGK--KVEVKRAEPRDSKSQAPGQP 228
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 129 (50.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 40 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSE 99
A EE D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F
Sbjct: 3 AAAEEAD-RTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 100 AVQEALHL-NESELHGRQLKV 119
+V A++L N +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>RGD|619928 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
RGD:619928 GO:GO:0005634 eggNOG:NOG238057 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD UniGene:Rn.39199 EMBL:U94858 IPI:IPI00195515
STRING:O08729 UCSC:RGD:619928 InParanoid:O08729
Genevestigator:O08729 Uniprot:O08729
Length = 85
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGS---SLANREEVDSRSVFVGNVDY 57
+K R++EMEEEA L+++ +V +M P G SL + E D+RS++VGNVDY
Sbjct: 23 IKARVREMEEEADKLKELQNEVXKQMXMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDY 82
Query: 58 SCT 60
T
Sbjct: 83 GAT 85
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 128 (50.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 128 (50.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|I3LPX5 [details] [associations]
symbol:LOC100625706 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0045836 "positive regulation of
meiosis" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YVIPPAY
EMBL:FP312724 Ensembl:ENSSSCT00000022390 Uniprot:I3LPX5
Length = 298
Score = 130 (50.8 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 34/125 (27%), Positives = 61/125 (48%)
Query: 19 HAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 77
++ + E +++ AA E ++ ++FVG +D E++ F G+V V
Sbjct: 10 NSTISREASTQSSSAATSQGYVLPEGKIMPNTIFVGGIDVRMDETEIRSFFARYGSVKEV 69
Query: 78 TIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPGMK-QHRP 134
I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+ Q RP
Sbjct: 70 KIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCAYHVQPRP 128
Query: 135 RRPNP 139
NP
Sbjct: 129 LVFNP 133
>MGI|MGI:1342328 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=ISO;IDA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0044464 "cell part" evidence=IDA] [GO:0045836 "positive
regulation of meiosis" evidence=IMP] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO;IDA]
[GO:0048477 "oogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1342328 GO:GO:0007275 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:X95724 EMBL:U38690 EMBL:U46694 EMBL:AK014854
EMBL:AK033183 IPI:IPI00262067 RefSeq:NP_034151.3 UniGene:Mm.280641
PDB:2XS2 PDB:2XS5 PDB:2XS7 PDB:2XSF PDBsum:2XS2 PDBsum:2XS5
PDBsum:2XS7 PDBsum:2XSF ProteinModelPortal:Q64368 SMR:Q64368
IntAct:Q64368 MINT:MINT-133503 STRING:Q64368 PhosphoSite:Q64368
PaxDb:Q64368 PRIDE:Q64368 Ensembl:ENSMUST00000010736 GeneID:13164
KEGG:mmu:13164 UCSC:uc008cyv.2 InParanoid:Q64368
EvolutionaryTrace:Q64368 NextBio:283242 Bgee:Q64368 CleanEx:MM_DAZL
Genevestigator:Q64368 GermOnline:ENSMUSG00000010592 Uniprot:Q64368
Length = 298
Score = 130 (50.8 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 37/132 (28%), Positives = 62/132 (46%)
Query: 12 ATALRQMHAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQS 70
AT ++ V E +++ A E ++ +VFVG +D E++ F
Sbjct: 3 ATTSEAPNSAVSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFAR 62
Query: 71 CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPG 128
G+V V I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+
Sbjct: 63 YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCT 121
Query: 129 MK-QHRPRRPNP 139
Q RP NP
Sbjct: 122 YHVQPRPLIFNP 133
>RGD|1591714 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IEA;ISO] [GO:0044464 "cell part" evidence=ISO] [GO:0045836
"positive regulation of meiosis" evidence=IEA;ISO] [GO:0045948
"positive regulation of translational initiation" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008494 GO:GO:0003730 GO:GO:0007281
GO:GO:0005844 GO:GO:0045836 GO:GO:0045948 OrthoDB:EOG4T783S
EMBL:CH473987 UniGene:Rn.136288 IPI:IPI00765442
Ensembl:ENSRNOT00000039512 UCSC:RGD:1591714 Uniprot:D4A3C6
Length = 298
Score = 130 (50.8 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 37/132 (28%), Positives = 62/132 (46%)
Query: 12 ATALRQMHAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQS 70
AT ++ V E +++ A E ++ +VFVG +D E++ F
Sbjct: 3 ATTSEAPNSAVSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFAR 62
Query: 71 CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPG 128
G+V V I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+
Sbjct: 63 YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCT 121
Query: 129 MK-QHRPRRPNP 139
Q RP NP
Sbjct: 122 YHVQPRPLIFNP 133
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 128 (50.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 128 (50.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 128 (50.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 128 (50.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 128 (50.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 137 (53.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 37/127 (29%), Positives = 68/127 (53%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 796 LEKHKLFISGLPFSCTKEELEGICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 855
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGA-IIPPFLYSPYGYGK 162
L ++ + +KV + +N P K P +P V + GA ++P +Y G G+
Sbjct: 856 VLKMDGMTIKENVIKVAI--SNPPQRKV--PEKPE---VRTAPGAPMVPRQMYGARGKGR 908
Query: 163 IPRFRMP 169
+P
Sbjct: 909 TQLSLLP 915
Score = 133 (51.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 41/134 (30%), Positives = 63/134 (47%)
Query: 9 EEEATALRQMHAKVGNEMASKQDPAAGG-----SSLANREEVDSRSVFVGNVDYSCTPEE 63
+EE T L + SKQ A +A+ DS +VFV N+ YS E
Sbjct: 658 KEEETKLSGKCLTIDVAPPSKQKEKAASLKRDMPKVAHDSSKDSVTVFVSNLPYSIEEPE 717
Query: 64 VQQH--FQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT- 120
V+ F++CG V ++ G +GY YVEF + ++ Q+AL L+ + GR + V+
Sbjct: 718 VKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSP 777
Query: 121 -VKRTNVPGMKQHR 133
V ++ P K R
Sbjct: 778 CVDKSKNPDFKMFR 791
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 137 (53.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 36/127 (28%), Positives = 68/127 (53%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE++ ++ GTV + + T++ G+PKG AYVE+ +S+A Q
Sbjct: 798 LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGA-IIPPFLYSPYGYGK 162
+ ++ + +KV + +N P K P +P V + GA ++P +Y G G+
Sbjct: 858 VMKMDGMTIRENVIKVAI--SNPPQRKV--PEKPE---VRTAPGAPMLPRQMYGARGKGR 910
Query: 163 IPRFRMP 169
+P
Sbjct: 911 TQLSLLP 917
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 39 LANREEVDSRSVFVGNVDYSCTPEEVQQH--FQSCGTVNRVTIRTDKFGQPKGYAYVEFL 96
+A+ DS +VFV N+ YS EV+ F+ CG V ++ G +GY YVEF
Sbjct: 695 VAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFG 754
Query: 97 QSEAVQEALHLNESELHGRQLKVT--VKRTNVPGMKQHR 133
+ ++ Q+AL L+ + GR + V+ V ++ P K R
Sbjct: 755 EEKSAQQALELDRKIVEGRPMFVSPCVDKSKNPDFKVFR 793
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 128 (50.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 128 (50.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 128 (50.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 132 (51.5 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALH 106
R VFVGN+ + E + ++F CG+++ V I R K KG+AY++F + V +AL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 107 LNESEL-HGRQLKVTVKRTNVP 127
LNE ++ GR L++ ++ P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>TAIR|locus:2061077 [details] [associations]
symbol:AT2G24350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10 EMBL:BT033027
EMBL:AK228942 IPI:IPI00535352 RefSeq:NP_180012.2 UniGene:At.13805
UniGene:At.39171 ProteinModelPortal:Q0WPW8 SMR:Q0WPW8 PRIDE:Q0WPW8
EnsemblPlants:AT2G24350.1 GeneID:816971 KEGG:ath:AT2G24350
TAIR:At2g24350 eggNOG:NOG242858 HOGENOM:HOG000120691
InParanoid:Q0WPW8 OMA:TEPHIAY PhylomeDB:Q0WPW8
ProtClustDB:CLSN2690892 Genevestigator:Q0WPW8 Uniprot:Q0WPW8
Length = 537
Score = 133 (51.9 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 39/122 (31%), Positives = 64/122 (52%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEV-DSRSVFVGNVDYSC 59
+K +++E+E +Q+ + E K P +G S +E+V +SR + V NV Y+
Sbjct: 400 VKEKMQELELRIIQSKQLKKQKVEER--KPSPQSGESQY--QEDVSESRVIHVTNVYYAA 455
Query: 60 TPEEVQQHFQS-CGTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEALHLNESELHGRQL 117
E + F S CG V V + TD + PKG A+V F E+V +A+ L+ + + R +
Sbjct: 456 KKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYSRPI 515
Query: 118 KV 119
KV
Sbjct: 516 KV 517
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 128 (50.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 34 (17.0 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 117 LKVTVKRTNVPGMKQHRPR 135
LK+ ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 34/105 (32%), Positives = 58/105 (55%)
Query: 18 MHAKVGNEMASKQDPAAGGS-SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR 76
M A V E++S +D GS S R DS +++VGN+ + T E++ + F CG V
Sbjct: 1 MFASV--ELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRV 58
Query: 77 VTIRTDKFGQ-PKGYAYVEF-LQSEAVQEALHLNESELHGRQLKV 119
+ + DK+ + P G+ +VE+ ++SEA +N + L R ++V
Sbjct: 59 IVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRV 103
>UNIPROTKB|E7EV40 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010139
HGNC:HGNC:2685 IPI:IPI00927411 ProteinModelPortal:E7EV40 SMR:E7EV40
Ensembl:ENST00000454457 ArrayExpress:E7EV40 Bgee:E7EV40
Uniprot:E7EV40
Length = 204
Score = 127 (49.8 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 19 HAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 77
++ + E +++ AA E ++ +VFVG +D E++ F G+V V
Sbjct: 48 NSTISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEV 107
Query: 78 TIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPGMK-QHRP 134
I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+ Q RP
Sbjct: 108 KIITDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCAYHVQPRP 166
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 131 (51.2 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E++++ F G V + + D+ G+PKG+ + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75
Query: 106 HLNESELHGRQLKVTVKRTNVPGMKQHR----PRRPNPF 140
+LN E+ GR L+V T M+ + P+ NP+
Sbjct: 76 NLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPY 114
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 129 (50.5 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y + + ++ F G V + + D+ G+PKGY ++EF + + A+
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 106 HLNESELHGRQLKV 119
+LN EL GR L+V
Sbjct: 78 NLNGYELSGRILRV 91
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 37/136 (27%), Positives = 65/136 (47%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
+E ++E ++ + V A ++ A + N+ + S+++F GN+ Y +++
Sbjct: 342 EESKDEKVTPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIE 401
Query: 66 QHFQSCGTVNRVTIRTDKF--GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123
F+ G V V +R F G KGY ++EF E Q+AL +N L GR +++ +
Sbjct: 402 NFFKEAGEV--VDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDL-- 457
Query: 124 TNVPGMKQHRPRRPNP 139
N G PR NP
Sbjct: 458 ANERGT----PRNSNP 469
Score = 116 (45.9 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 39/141 (27%), Positives = 64/141 (45%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQ 66
EM + R + + NE + ++ G E SR+++V S +E+++
Sbjct: 442 EMNGKLLLGRDVRLDLANERGTPRNSNPGRKG----EGSQSRTIYVRGFSSSLGEDEIKK 497
Query: 67 ----HFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121
HF CG V RV + TD+ G +G+AY++ + EAL L+ SE+ G + V
Sbjct: 498 ELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL--TSGFDEALQLSGSEIGGGNIHVEE 555
Query: 122 KRT--NVPGMKQHR-PRRPNP 139
R + G +R P R P
Sbjct: 556 SRPRDSDEGRSSNRAPARGAP 576
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 101
+EE D R+VFVGN++ E + + F G + +VTI D+ G PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPESV 63
Query: 102 QEALHL-NESELHGRQLKV 119
A+ L N L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEAL 105
++ ++VG++ Y T +++++ F GTV V I TD + G+ KG YV L E +EA+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 106 H-LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNP 139
L+ + L R + V+V R + PRR P
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRP-APRRGKP 95
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQE 103
+ ++VG++ Y T +E+Q F G + + D+ G+ KG+A++ + +A QE
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 104 ALH-LNESELHGRQLKVTVKRTN 125
A+ N +L GR+++V + R N
Sbjct: 75 AVSKANGIDLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQE 103
+ ++VG++ Y T +E+Q F G + + D+ G+ KG+A++ + +A QE
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 104 ALH-LNESELHGRQLKVTVKRTN 125
A+ N +L GR+++V + R N
Sbjct: 75 AVSKANGIDLQGRKIRVNIAREN 97
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEAL 105
++ ++VG++ Y T +++++ F GTV V I TD + G+ KG YV L E +EA+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 106 H-LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNP 139
L+ + L R + V+V R + PRR P
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRP-APRRGKP 95
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 35/121 (28%), Positives = 58/121 (47%)
Query: 32 PAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGY 90
P+ GG+ R ++ +FVG + S T E + +F GT+ V + D Q P+G+
Sbjct: 110 PSHGGNGGGAR----TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGF 165
Query: 91 AYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAII 150
++ F E+V LH EL+G+ V VKR + P R +P + Y + ++
Sbjct: 166 GFITFDSEESVDMVLHKTFHELNGKM--VEVKRAVPKELSSTTPNR-SPLIGYGNNYGVV 222
Query: 151 P 151
P
Sbjct: 223 P 223
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 35/123 (28%), Positives = 65/123 (52%)
Query: 7 EMEEEATALRQMHAKVGNEM------ASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
E + EA A + + K G E+ QD G +S + E S+++ + N+ YS T
Sbjct: 357 EFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGE---SKTLVLSNLSYSAT 413
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 119
E +Q+ F+ + + ++ G+ KGYA++EF E +EAL+ N+ E+ GR +++
Sbjct: 414 EETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 470
Query: 120 TVK 122
++
Sbjct: 471 ELQ 473
Score = 116 (45.9 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 6 KEMEEEATALRQMHAKVGNEMAS-KQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEV 64
+E EEE +++ K EMA K P A + E S ++FVGN++++ + E+
Sbjct: 186 EEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPEL 245
Query: 65 QQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
+ N + + + G + + YV+F +E +++AL L ++ G ++K+
Sbjct: 246 KTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 300
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 35/123 (28%), Positives = 65/123 (52%)
Query: 7 EMEEEATALRQMHAKVGNEM------ASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
E + EA A + + K G E+ QD G +S + E S+++ + N+ YS T
Sbjct: 362 EFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGE---SKTLVLSNLSYSAT 418
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 119
E +Q+ F+ + + ++ G+ KGYA++EF E +EAL+ N+ E+ GR +++
Sbjct: 419 EETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 475
Query: 120 TVK 122
++
Sbjct: 476 ELQ 478
Score = 116 (45.9 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 6 KEMEEEATALRQMHAKVGNEMAS-KQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEV 64
+E EEE +++ K EMA K P A + E S ++FVGN++++ + E+
Sbjct: 191 EEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPEL 250
Query: 65 QQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
+ N + + + G + + YV+F +E +++AL L ++ G ++K+
Sbjct: 251 KTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 305
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 35/123 (28%), Positives = 65/123 (52%)
Query: 7 EMEEEATALRQMHAKVGNEM------ASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
E + EA A + + K G E+ QD G +S + E S+++ + N+ YS T
Sbjct: 362 EFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGE---SKTLVLSNLSYSAT 418
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 119
E +Q+ F+ + + ++ G+ KGYA++EF E +EAL+ N+ E+ GR +++
Sbjct: 419 EETLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 475
Query: 120 TVK 122
++
Sbjct: 476 ELQ 478
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEAL 105
+ +FV + +S E ++QHF G++N + DK + +G+ +V F QS++VQ+A+
Sbjct: 2 NNKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAM 61
Query: 106 HLNESELHGRQLKVTVKRTNVPGMKQHRP 134
E+E+ GR+L V+ + Q +P
Sbjct: 62 EA-ENEMGGRKLVVSFAQEKTEN-NQQKP 88
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLN 108
+++V NV+ + T EE+++HF CGT+ + D+ G+ KG+ +V F E +A+
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 109 ESEL-HGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRG-AIIPPFLYSPYGY 160
++ HG+ L V + + Q + + N +S A + P Y+P Y
Sbjct: 365 HGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYY 418
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 128 (50.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRT-DKFGQPKGYAYVEFLQSEAVQEA 104
S+ +FVGN+ + T E +++HF CGTV V + T G+ KGYA+VEF EA + A
Sbjct: 179 SKRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEFEDLEAAKTA 237
Score = 112 (44.5 bits), Expect = 0.00015, P = 0.00015
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 35 GGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQS-CG----TVNRVTIR--TDKFG-- 85
GG+ A ++ D +++GN+ +S T E++++ + C T+ RV + +DK
Sbjct: 58 GGTETAPQKRSDY-GIWIGNLAFSVTKEDIRRFLTTNCSFTDATITRVHLPKPSDKSSRA 116
Query: 86 QPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
Q KG+AYV+F +A++EAL L+E + GR++ +
Sbjct: 117 QNKGFAYVDFSTPKALEEALGLSEQLVSGRRVLI 150
>UNIPROTKB|G4N6H0 [details] [associations]
symbol:MGG_03722 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001234 RefSeq:XP_003716159.1 ProteinModelPortal:G4N6H0
EnsemblFungi:MGG_03722T0 GeneID:2676663 KEGG:mgr:MGG_03722
Uniprot:G4N6H0
Length = 648
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 40/112 (35%), Positives = 57/112 (50%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI--RTDK-FGQPKGYAYVEFLQSEA 100
EVD RSVFVGN+ T E+V F + GTVNRV I RT QP +A++EF + +
Sbjct: 363 EVDRRSVFVGNLPRDITEEQVADLFSAIGTVNRVQIIKRTGTTIEQP--FAFIEFDRPDT 420
Query: 101 VQEALHLNESELH-GRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIP 151
+ A+ +H G +L+V K + P R P + + G I+P
Sbjct: 421 PEAAIAALHGFIHEGSRLRVERKVVKDKHSPRRVPSRYLPRLRTEVAGTIMP 472
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 131 (51.2 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 34/122 (27%), Positives = 61/122 (50%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEA 100
+ ++ +F+ + YS T E ++ + GT+ + I T++ G+ KG AYVEF +++A
Sbjct: 780 KTSMEKHKIFISGLPYSATKETLEDLCKEHGTIRAIRIVTNRSGKSKGLAYVEFEDEAQA 839
Query: 101 VQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGY 160
Q L ++ + L L V + +N PG + P+ F+ GA +P L G
Sbjct: 840 SQAVLKMDGTMLENFTLSVAI--SNPPGRRMKDEAAPSRFL-----GAAMPRQLQGARGK 892
Query: 161 GK 162
G+
Sbjct: 893 GR 894
Score = 123 (48.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 31 DPAAGGSSLANREEVDSRSVFVGNVDYSCT-PE-EVQQHFQSCGTVNRVT-IRTDKFGQP 87
+P + + D VFV N+ ++ PE +++ FQ CGT+ +V + T K G
Sbjct: 672 EPQRQPHDMPKEQRKDENCVFVSNLTFNMEDPEGKLRTLFQGCGTIQQVRPVFTAK-GTF 730
Query: 88 KGYAYVEFLQSEAVQEALHLNESELHGRQLKVT--VKRTNVPGMK 130
+GY YV+F AV EAL ++ E+ GR + V+ V + P K
Sbjct: 731 RGYCYVQFEDRLAVPEALKMDRQEVDGRPMYVSPCVDKNKNPDFK 775
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 126 (49.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 104 ALHL-NESELHGRQLKV 119
A++L N +L+GR +K+
Sbjct: 66 AMNLLNGIKLYGRPIKI 82
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 129 (50.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 40/139 (28%), Positives = 65/139 (46%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS-VFVGNVDYSC 59
++ +++E ++A + H+ G + K+DP + A ++ S VFV N+DY
Sbjct: 116 VEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKV 175
Query: 60 TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS-EAVQEALHLNESELHGRQLK 118
+++++ F G V R I DK G+ +G V F QS EAVQ N L R +
Sbjct: 176 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 235
Query: 119 VTVKRTNVPGMKQHRPRRP 137
V + +P P RP
Sbjct: 236 VKMDERALPKGDFFPPERP 254
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 129 (50.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 40/139 (28%), Positives = 65/139 (46%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS-VFVGNVDYSC 59
++ +++E ++A + H+ G + K+DP + A ++ S VFV N+DY
Sbjct: 116 VEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKV 175
Query: 60 TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS-EAVQEALHLNESELHGRQLK 118
+++++ F G V R I DK G+ +G V F QS EAVQ N L R +
Sbjct: 176 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 235
Query: 119 VTVKRTNVPGMKQHRPRRP 137
V + +P P RP
Sbjct: 236 VKMDERALPKGDFFPPERP 254
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 129 (50.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 40/139 (28%), Positives = 65/139 (46%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS-VFVGNVDYSC 59
++ +++E ++A + H+ G + K+DP + A ++ S VFV N+DY
Sbjct: 116 VEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKV 175
Query: 60 TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS-EAVQEALHLNESELHGRQLK 118
+++++ F G V R I DK G+ +G V F QS EAVQ N L R +
Sbjct: 176 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 235
Query: 119 VTVKRTNVPGMKQHRPRRP 137
V + +P P RP
Sbjct: 236 VKMDERALPKGDFFPPERP 254
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 129 (50.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 40/139 (28%), Positives = 65/139 (46%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS-VFVGNVDYSC 59
++ +++E ++A + H+ G + K+DP + A ++ S VFV N+DY
Sbjct: 130 VEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKV 189
Query: 60 TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS-EAVQEALHLNESELHGRQLK 118
+++++ F G V R I DK G+ +G V F QS EAVQ N L R +
Sbjct: 190 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 249
Query: 119 VTVKRTNVPGMKQHRPRRP 137
V + +P P RP
Sbjct: 250 VKMDERALPKGDFFPPERP 268
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQP-KGYAYVEFLQSEAV 101
EE D R+VFV + + +++ F GTV V + TDK + KG YVEF Q E V
Sbjct: 261 EESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMV 320
Query: 102 QEALHLNESELHGRQLKV 119
+A+ L+ S L G+Q+ V
Sbjct: 321 DKAIALSGSVLDGQQILV 338
>UNIPROTKB|E2RMR3 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AAEX03012475 Ensembl:ENSCAFT00000029410 Uniprot:E2RMR3
Length = 743
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 40/139 (28%), Positives = 65/139 (46%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS-VFVGNVDYSC 59
++ +++E ++A + H+ G + K+DP + A ++ S VFV N+DY
Sbjct: 169 VEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKV 228
Query: 60 TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS-EAVQEALHLNESELHGRQLK 118
+++++ F G V R I DK G+ +G V F QS EAVQ N L R +
Sbjct: 229 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 288
Query: 119 VTVKRTNVPGMKQHRPRRP 137
V + +P P RP
Sbjct: 289 VKMDERALPKGDFFPPERP 307
>UNIPROTKB|A3DUJ0 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like transcript variant
1" species:9913 "Bos taurus" [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:DAAA02003725 EMBL:DQ408764 EMBL:DQ408765
EMBL:EF501823 IPI:IPI00706010 RefSeq:NP_001075194.1
UniGene:Bt.63695 STRING:A3DUJ0 Ensembl:ENSBTAT00000048665
GeneID:530116 KEGG:bta:530116 InParanoid:A3DUJ0 NextBio:20875183
Uniprot:A3DUJ0
Length = 295
Score = 127 (49.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 34/125 (27%), Positives = 60/125 (48%)
Query: 19 HAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 77
++ + E +++ A E ++ +VFVG +D E++ F G+V V
Sbjct: 10 NSTISREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEV 69
Query: 78 TIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPGMK-QHRP 134
I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+ Q RP
Sbjct: 70 KIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCAYHVQPRP 128
Query: 135 RRPNP 139
NP
Sbjct: 129 LVFNP 133
>UNIPROTKB|J9NTC5 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 CTD:1618 OMA:YVIPPAY EMBL:AAEX03013583
RefSeq:XP_534251.3 Ensembl:ENSCAFT00000046462 GeneID:477055
KEGG:cfa:477055 Uniprot:J9NTC5
Length = 295
Score = 127 (49.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 34/125 (27%), Positives = 60/125 (48%)
Query: 19 HAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 77
++ + E +++ A E ++ +VFVG +D E++ F G+V V
Sbjct: 10 NSTISREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEV 69
Query: 78 TIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPGMK-QHRP 134
I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+ Q RP
Sbjct: 70 KIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCAYHVQPRP 128
Query: 135 RRPNP 139
NP
Sbjct: 129 LVFNP 133
>UNIPROTKB|Q92904 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0007281 "germ cell development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 EMBL:CH471055 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0003730
GO:GO:0007281 GO:GO:0005844 GO:GO:0045836 eggNOG:NOG260394
GO:GO:0045948 OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573
HOGENOM:HOG000246400 EMBL:U65918 EMBL:U66726 EMBL:U66078
EMBL:U77476 EMBL:U77467 EMBL:U77468 EMBL:U77469 EMBL:U77470
EMBL:U77471 EMBL:U77472 EMBL:U77473 EMBL:U77474 EMBL:U77475
EMBL:AK303026 EMBL:BX648638 EMBL:AC010139 EMBL:BC027595
IPI:IPI00871660 RefSeq:NP_001177740.1 RefSeq:NP_001342.2
UniGene:Hs.131179 ProteinModelPortal:Q92904 SMR:Q92904
IntAct:Q92904 STRING:Q92904 PhosphoSite:Q92904 DMDM:27805453
PRIDE:Q92904 DNASU:1618 Ensembl:ENST00000250863
Ensembl:ENST00000399444 GeneID:1618 KEGG:hsa:1618 UCSC:uc003cbb.3
GeneCards:GC03M016603 HGNC:HGNC:2685 HPA:HPA019593 HPA:HPA019777
MIM:601486 neXtProt:NX_Q92904 PharmGKB:PA27155 OMA:YVIPPAY
GenomeRNAi:1618 NextBio:6646 ArrayExpress:Q92904 Bgee:Q92904
CleanEx:HS_DAZL Genevestigator:Q92904 GermOnline:ENSG00000092345
Uniprot:Q92904
Length = 295
Score = 127 (49.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 19 HAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 77
++ + E +++ AA E ++ +VFVG +D E++ F G+V V
Sbjct: 10 NSTISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEV 69
Query: 78 TIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNVPGMK-QHRP 134
I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+ Q RP
Sbjct: 70 KIITDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCAYHVQPRP 128
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 128 (50.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/92 (30%), Positives = 56/92 (60%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALH 106
+++FV ++Y + ++++ F+S G + RV + TD+ +PKGYA++E++ + ++ A
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 107 LNESE-LHGRQLKVTVKR-TNVPGMKQHRPRR 136
+ + + GR++ V V+R VP RPRR
Sbjct: 198 QADGQKIDGRRVLVDVERGRTVPNW---RPRR 226
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 128 (50.1 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 20 AKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 79
A G E S + + G A++ E D +F+G + + T ++++ +F G V T+
Sbjct: 52 ASGGTEGGSAE--SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 109
Query: 80 RTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGR 115
+ D G+ +G+ +V F +SE+V + + E +L+G+
Sbjct: 110 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGK 146
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 104 ALHL-NESELHGRQLKV 119
A++L N +L+GR +K+
Sbjct: 66 AMNLLNGIKLYGRPIKI 82
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 104 ALHL-NESELHGRQLKV 119
A++L N +L+GR +K+
Sbjct: 66 AMNLLNGIKLYGRPIKI 82
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 128 (50.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 127 (49.8 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQ-DPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
R++ E RQ + +M DP A G + +++FV V+Y T
Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF--------KTLFVARVNYDTTES 117
Query: 63 EVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120
++++ F+ G + R+ + + + G+P+GYA++E+ + A H + ++ GR++ V
Sbjct: 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
Query: 121 VKRTNVPGMKQHRPRR 136
V+R +K RPRR
Sbjct: 178 VERGRT--VKGWRPRR 191
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 128 (50.1 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 128 (50.1 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 38/107 (35%), Positives = 52/107 (48%)
Query: 28 SKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQ 86
S+ P S L+ EE D R+VFV + T E+ F+ G V I DK G+
Sbjct: 221 SRSRPRERSSKLSE-EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
Query: 87 PKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHR 133
KG AYVEF ++VQ A+ L+ L G L V V+ T ++ R
Sbjct: 280 SKGVAYVEFCHEDSVQAAIALSGKRLLG--LPVIVQLTEAEKNRKAR 324
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 128 (50.1 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL- 105
RSVFVGN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 106 HLNESELHGRQLKV 119
+LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|Q4V7Y4 [details] [associations]
symbol:dazl-b "Deleted in azoospermia-like-B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0007281 "germ cell
development" evidence=ISS] [GO:0008354 "germ cell migration"
evidence=ISS] [GO:0008494 "translation activator activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=ISS]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0003723
GO:GO:0008494 GO:GO:0007281 GO:GO:0045948 GO:GO:0008354
UniGene:Xl.311 HSSP:Q15427 Xenbase:XB-GENE-6078612
HOVERGEN:HBG000573 GO:GO:0032019 EMBL:BC071023 EMBL:BC097658
ProteinModelPortal:Q4V7Y4 Uniprot:Q4V7Y4
Length = 286
Score = 126 (49.4 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 24 NEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK 83
N A+ ++ A + ++ +VFVG +D + E++ F G V V I TD+
Sbjct: 9 NYAATAEEEAVNQGFVLPEGKIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDR 68
Query: 84 FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRP---RRPNPF 140
G KGY ++ F +Q+ + ++ HG++LK+ + Q RP P PF
Sbjct: 69 TGVSKGYGFISFSDEVDIQKIVK-SQISFHGKKLKLGPAIRKICTYVQPRPVVLSHPTPF 127
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 127 (49.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQ-DPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
R++ E RQ + +M DP A G + +++FV V+Y T
Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF--------KTLFVARVNYDTTES 117
Query: 63 EVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120
++++ F+ G + R+ + + + G+P+GYA++E+ + A H + ++ GR++ V
Sbjct: 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
Query: 121 VKRTNVPGMKQHRPRR 136
V+R +K RPRR
Sbjct: 178 VERGRT--VKGWRPRR 191
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 50 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLN 108
++VGN+ Y ++ Q+F G + V I R + G+ KGYA+V ++ + +AL +
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAH 105
Query: 109 ESELHGRQLKVTVKRT 124
+L GR L V + ++
Sbjct: 106 GKDLQGRSLVVRIAKS 121
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 50 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQSEAVQEALHLN 108
++VGN+ Y ++ Q+F G + V I R + G+ KGYA+V ++ + +AL +
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAH 105
Query: 109 ESELHGRQLKVTVKRT 124
+L GR L V + ++
Sbjct: 106 GKDLQGRSLVVRIAKS 121
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 127 (49.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQ-DPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
R++ E RQ + +M DP A G + +++FV V+Y T
Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF--------KTLFVARVNYDTTES 117
Query: 63 EVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120
++++ F+ G + R+ + + + G+P+GYA++E+ + A H + ++ GR++ V
Sbjct: 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
Query: 121 VKRTNVPGMKQHRPRR 136
V+R +K RPRR
Sbjct: 178 VERGRT--VKGWRPRR 191
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 127 (49.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQ-DPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
R++ E RQ + +M DP A G + +++FV V+Y T
Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF--------KTLFVARVNYDTTES 117
Query: 63 EVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120
++++ F+ G + R+ + + + G+P+GYA++E+ + A H + ++ GR++ V
Sbjct: 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
Query: 121 VKRTNVPGMKQHRPRR 136
V+R +K RPRR
Sbjct: 178 VERGRT--VKGWRPRR 191
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 127 (49.8 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQ-DPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
R++ E RQ + +M DP A G + +++FV V+Y T
Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF--------KTLFVARVNYDTTES 117
Query: 63 EVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120
++++ F+ G + R+ + + + G+P+GYA++E+ + A H + ++ GR++ V
Sbjct: 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
Query: 121 VKRTNVPGMKQHRPRR 136
V+R +K RPRR
Sbjct: 178 VERGRT--VKGWRPRR 191
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 127 (49.8 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQ-DPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
R++ E RQ + +M DP A G + +++FV V+Y T
Sbjct: 66 RMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF--------KTLFVARVNYDTTES 117
Query: 63 EVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120
++++ F+ G + R+ + + + G+P+GYA++E+ + A H + ++ GR++ V
Sbjct: 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
Query: 121 VKRTNVPGMKQHRPRR 136
V+R +K RPRR
Sbjct: 178 VERGRT--VKGWRPRR 191
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 126 (49.4 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL 105
SR VFVGN+ Y + E++ F G V + D+ G+PKG+ + E+ +++ A+
Sbjct: 7 SRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAV 66
Query: 106 -HLNESELHGRQLKV 119
+LN++E+ GR+L+V
Sbjct: 67 RNLNDTEIMGRKLRV 81
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 127 (49.8 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 29/99 (29%), Positives = 55/99 (55%)
Query: 40 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI-RTDKFGQPKGYAYVEFLQS 98
AN + +++FV ++Y T ++++ F+ G + R+ I K G+P+GYA++E+
Sbjct: 95 ANAQGDAFKTLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHE 154
Query: 99 EAVQEAL-HLNESELHGRQLKVTVKRTNVPGMKQHRPRR 136
+ A H + ++ GR++ V V+R +K RPRR
Sbjct: 155 RDMHSAYKHADGKKIDGRRVLVDVERGRT--VKGWRPRR 191
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYVEFLQSEAVQEALH- 106
S+ V N+ Y +P+ +++ F+ G V V I D++ + +G+A+V F ++A+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 107 LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSR 146
++ + L GR+L+V + R P H R P P +SR
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRSRSRSR 114
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 124 (48.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 39 LANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS 98
L +EE D R+VFVGN++ E + + F G + +VTI D+ G+PK + +V F
Sbjct: 2 LPAQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60
Query: 99 EAVQEALHL-NESELHGRQLKV 119
E+V A+ L N L+GR + V
Sbjct: 61 ESVSYAIALLNGIRLYGRPINV 82
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYVEFLQSEAVQEALH- 106
S+ V N+ Y +P+ +++ F+ G V V I D++ + +G+A+V F ++A+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 107 LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNP 139
++ + L GR+L+V + R P H R P P
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPP 107
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/89 (31%), Positives = 54/89 (60%)
Query: 33 AAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYA 91
+ +++A+ E+V R+++VGN+ Y V++ F G+V+ V + DK G+ +G+
Sbjct: 58 STSSNTIASDEDV--RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFG 115
Query: 92 YVEFLQSEAVQEALH-LNESELHGRQLKV 119
+VE + S+ + +A+ LN++E R LKV
Sbjct: 116 FVE-MASDDLDKAISALNDTEFQQRTLKV 143
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/89 (31%), Positives = 54/89 (60%)
Query: 33 AAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYA 91
+ +++A+ E+V R+++VGN+ Y V++ F G+V+ V + DK G+ +G+
Sbjct: 58 STSSNTIASDEDV--RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFG 115
Query: 92 YVEFLQSEAVQEALH-LNESELHGRQLKV 119
+VE + S+ + +A+ LN++E R LKV
Sbjct: 116 FVE-MASDDLDKAISALNDTEFQQRTLKV 143
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/120 (28%), Positives = 66/120 (55%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQ---DPAAGGSSLANRE---EVDSRSVFVGNVDYSCT 60
E + EA A + + K G E+ + D S +++ E +S+++ V N+ Y+ +
Sbjct: 412 EFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAAS 471
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 119
E +Q+ F+ ++ + + G+PKGYA+VEF +E +EAL+ N +E+ GR +++
Sbjct: 472 EETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 528
Score = 118 (46.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 32/131 (24%), Positives = 63/131 (48%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
+E E+ +++ K EMA+K P A + + S+FV N+ + EE++
Sbjct: 237 EEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEIKAPASAFSLFVKNLTPTKDYEELR 296
Query: 66 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 125
+ + + + G K + YV+FL +E + +AL LN +L G ++K+ K +
Sbjct: 297 TAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLE-KAKS 355
Query: 126 VPGMKQHRPRR 136
+K+++ R
Sbjct: 356 KESLKENKKER 366
Score = 114 (45.2 bits), Expect = 0.00021, P = 0.00021
Identities = 33/112 (29%), Positives = 58/112 (51%)
Query: 10 EEATALRQMHAKVGNEMASKQDPAAGGSSLA-NREEVDSRSVFVGNVDYSCTPEEVQQHF 68
E+ Q++ K + K + A SL N++E D+R++FV N+ Y T +E++ F
Sbjct: 330 EDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF 389
Query: 69 QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNE-SELHGRQLKV 119
++ V V +K G KG AY+EF ++AL + +E+ GR + +
Sbjct: 390 ENALEVRLVL---NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVI 438
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/120 (28%), Positives = 66/120 (55%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQ---DPAAGGSSLANRE---EVDSRSVFVGNVDYSCT 60
E + EA A + + K G E+ + D S +++ E +S+++ V N+ Y+ +
Sbjct: 414 EFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAAS 473
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 119
E +Q+ F+ ++ + + G+PKGYA+VEF +E +EAL+ N +E+ GR +++
Sbjct: 474 EETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 114 (45.2 bits), Expect = 0.00021, P = 0.00021
Identities = 33/112 (29%), Positives = 58/112 (51%)
Query: 10 EEATALRQMHAKVGNEMASKQDPAAGGSSLA-NREEVDSRSVFVGNVDYSCTPEEVQQHF 68
E+ Q++ K + K + A SL N++E D+R++FV N+ Y T +E++ F
Sbjct: 332 EDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF 391
Query: 69 QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNE-SELHGRQLKV 119
++ V V +K G KG AY+EF ++AL + +E+ GR + +
Sbjct: 392 ENALEVRLVL---NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVI 440
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 32/131 (24%), Positives = 62/131 (47%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
+E E+ +++ K EMA+K P A + S+FV N+ + EE++
Sbjct: 241 EEESEDEKPVKEAPGKRKKEMANKSAPEA--KKKKTETPASAFSLFVKNLTPTKDYEELR 298
Query: 66 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 125
+ + + + G K + YV+FL +E + +AL LN +L G ++K+ K +
Sbjct: 299 TAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLE-KAKS 357
Query: 126 VPGMKQHRPRR 136
+K+++ R
Sbjct: 358 KESLKENKKER 368
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/120 (28%), Positives = 66/120 (55%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQ---DPAAGGSSLANRE---EVDSRSVFVGNVDYSCT 60
E + EA A + + K G E+ + D S +++ E +S+++ V N+ Y+ +
Sbjct: 414 EFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAAS 473
Query: 61 PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV 119
E +Q+ F+ ++ + + G+PKGYA+VEF +E +EAL+ N +E+ GR +++
Sbjct: 474 EETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 114 (45.2 bits), Expect = 0.00021, P = 0.00021
Identities = 33/112 (29%), Positives = 58/112 (51%)
Query: 10 EEATALRQMHAKVGNEMASKQDPAAGGSSLA-NREEVDSRSVFVGNVDYSCTPEEVQQHF 68
E+ Q++ K + K + A SL N++E D+R++FV N+ Y T +E++ F
Sbjct: 332 EDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF 391
Query: 69 QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNE-SELHGRQLKV 119
++ V V +K G KG AY+EF ++AL + +E+ GR + +
Sbjct: 392 ENALEVRLVL---NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVI 440
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 32/131 (24%), Positives = 62/131 (47%)
Query: 6 KEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
+E E+ +++ K EMA+K P A + S+FV N+ + EE++
Sbjct: 241 EEESEDEKPVKEAPGKRKKEMANKSAPEA--KKKKTETPASAFSLFVKNLTPTKDYEELR 298
Query: 66 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 125
+ + + + G K + YV+FL +E + +AL LN +L G ++K+ K +
Sbjct: 299 TAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLE-KAKS 357
Query: 126 VPGMKQHRPRR 136
+K+++ R
Sbjct: 358 KESLKENKKER 368
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYVEFLQSEAVQEAL 105
S ++FV + +S T E + Q F G V +V + DK +PKG+AYV F E ++AL
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 106 -HLNESELHGRQLKV-TVK--RTNVPGMK 130
LN + GR + + T K + N P K
Sbjct: 80 LELNAQLVDGRVVILDTTKAAKHNPPDTK 108
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 115 (45.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/111 (26%), Positives = 56/111 (50%)
Query: 25 EMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF 84
E +D G S +N+ S+ +FVG + ++C E++ +F G V V + D
Sbjct: 94 EKTRTKDGWKGSKSDSNK----SKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAE 149
Query: 85 GQ-PKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRP 134
Q P+G+ ++ F ++V +A++++ ++ G+ KV VK+ K P
Sbjct: 150 KQRPRGFGFITFEAEQSVDQAVNMHFHDIMGK--KVEVKKAEPRDSKAPAP 198
Score = 100 (40.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 37 SSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEF 95
S+LA +E+ +FVG +D+S T E ++ +F G V I DK Q +G+ +V+F
Sbjct: 3 SNLAG-DEIGK--LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKF 59
Query: 96 LQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPR 135
V+ L L GR + K GM+ + R
Sbjct: 60 KDPNCVRTVLDTKPHNLDGRN--IDPKPCTPRGMQPEKTR 97
Score = 47 (21.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 151 PPFLYSPYGYGK 162
P F YS YGYG+
Sbjct: 343 PDFSYSQYGYGQ 354
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 123 (48.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 104 ALHL-NESELHGRQLKV 119
A++L N +L GR +K+
Sbjct: 66 AMNLLNGIKLFGRPIKI 82
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 123 (48.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN++ T E + + F G V +V I DK G+PK +A+V F +V
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 65
Query: 104 ALHL-NESELHGRQLKV 119
A++L N +L GR +K+
Sbjct: 66 AMNLLNGIKLFGRPIKI 82
>FB|FBgn0031224 [details] [associations]
symbol:CG11454 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 eggNOG:NOG273605 EMBL:BT021281
ProteinModelPortal:Q5BIE3 STRING:Q5BIE3 PaxDb:Q5BIE3 PRIDE:Q5BIE3
FlyBase:FBgn0031224 InParanoid:Q5BIE3 OrthoDB:EOG49ZW5B
ArrayExpress:Q5BIE3 Bgee:Q5BIE3 Uniprot:Q5BIE3
Length = 238
Score = 122 (48.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQ 102
E+ + R++F GN+D T E + + F G + V I TD G+P+ + +V + + AV
Sbjct: 65 EDEEQRTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAVP 124
Query: 103 EALHLNESELHGRQLKVTVKRTN---VPGMKQHRPRRPNPFMV 142
AL L + L Q KVT+K+ +P Q R R N FM+
Sbjct: 125 FALDLYQG-LELFQKKVTIKQQGGKQLPAYNQSRLR--NQFMM 164
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 122 (48.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 101
+EE D R+VFVGN++ E + + F G + +VT+ D+ G+PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESV 63
Query: 102 QEALHL-NESELHGRQLKVTVKRTN 125
A+ L N L+GR + V + N
Sbjct: 64 SYAIALLNGIRLYGRPINVQYRFGN 88
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 125 (49.1 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/90 (27%), Positives = 55/90 (61%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 107
+++F+G + Y + +++++ F+S G + V I DK +P+GYA++EF ++++ +A L
Sbjct: 98 KTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKL 157
Query: 108 NESE-LHGRQLKVTVKRTNVPGMKQHRPRR 136
+ + + R++ V ++R +K PRR
Sbjct: 158 ADGKKIENRRILVDIERGRT--IKNWIPRR 185
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 125 (49.1 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/90 (27%), Positives = 55/90 (61%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 107
+++F+G + Y + +++++ F+S G + V I DK +P+GYA++EF ++++ +A L
Sbjct: 98 KTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKL 157
Query: 108 NESE-LHGRQLKVTVKRTNVPGMKQHRPRR 136
+ + + R++ V ++R +K PRR
Sbjct: 158 ADGKKIENRRILVDIERGRT--IKNWIPRR 185
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 124 (48.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 22/92 (23%), Positives = 52/92 (56%)
Query: 27 ASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFG 85
A + ++ S A+ + D R +FVG + + T +E++ HF G + + ++TD + G
Sbjct: 35 AGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTG 94
Query: 86 QPKGYAYVEFLQSEAVQEALHLNESELHGRQL 117
+ +G+A++ F +EA+ + +E ++ +++
Sbjct: 95 RSRGFAFIVFTNTEAIDKVSAADEHIINSKKV 126
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 33 AAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYA 91
AA G+ +A R + R FV + ++ E+++HF G V + T+ DK G +G
Sbjct: 5 AARGA-VALRTRIGRRVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHRGMG 63
Query: 92 YVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNV 126
+V F E +Q AL + + G +L + +R V
Sbjct: 64 WVHFSSEEDLQNALQQEKHIIDGVKLHIQARRPKV 98
>UNIPROTKB|P57052 [details] [associations]
symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
Length = 281
Score = 123 (48.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 101
+EE D R+VFVGN++ E + + F G + +VTI D+ G+PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV 63
Query: 102 QEALHL-NESELHGRQLKV 119
A+ L N L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 125 (49.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/122 (31%), Positives = 60/122 (49%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSE-AVQEAL 105
R VFVGN+ Y T E++++ G V + TD+ G+PKGY + E+ E A+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 106 HLNESELHGRQLKVTV----KRTN-VPGMKQHRPRRPNPFMVYQSRGAIIPPF---LYSP 157
+L E++GRQL+V K T+ Q P P+ V +S+ I P ++ P
Sbjct: 69 NLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGPVDSNMHQP 128
Query: 158 YG 159
G
Sbjct: 129 VG 130
>FB|FBgn0035063 [details] [associations]
symbol:Eap "Exu-associated protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P52298
KO:K14789 ChiTaRS:RPL22 FlyBase:FBgn0035063 EMBL:BT030793
RefSeq:NP_523855.1 UniGene:Dm.30940 SMR:Q9W108 IntAct:Q9W108
MINT:MINT-1546135 EnsemblMetazoa:FBtr0072374 GeneID:37964
KEGG:dme:Dmel_CG3594 UCSC:CG3594-RA CTD:37964 InParanoid:Q9W108
OMA:IRIPKKR GenomeRNAi:37964 NextBio:806275 Uniprot:Q9W108
Length = 250
Score = 122 (48.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 37 SSLANREEVDSRSV-FVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEF 95
SSL +R V +V N+++ T ++++ HF + GTV + I + G G+A+VE
Sbjct: 102 SSLLRGASKTNRHVLYVTNLNFETTKDDLELHFSAAGTVKSIRIPKKRRG---GFAFVEM 158
Query: 96 LQSEAVQEALHLNESELHGRQLKVTV 121
+ Q A L+ +EL GR +KV +
Sbjct: 159 ADLSSFQNAFQLHNTELQGRNIKVQI 184
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 121 (47.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 40/125 (32%), Positives = 63/125 (50%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYVEFLQSEAVQEALH- 106
S+ V N+ Y +PE +++ F+ G V V I D++ + +G+A+V F ++A+
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 107 LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRF 166
++ + L GR+L+V + R RP P Y RGA PP Y GYG+ R
Sbjct: 75 MDGALLDGRELRVQMARYG----------RP-PDAHYSRRGA--PPRRYG--GYGRRSRS 119
Query: 167 RMPMR 171
R P R
Sbjct: 120 RSPRR 124
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 123 (48.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 20 AKVGNEMASKQDPAAGGSSLANREE-VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVT 78
+KVG + SS+ + S +FVG + YS +++ F G V
Sbjct: 5 SKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAK 64
Query: 79 IRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
I D+ G+ +G+A+V F +E A+ L+ +LHGR+++V
Sbjct: 65 IIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRV 106
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL 105
S +FVG + + ++Q F S G V T+ D+ G+ +G+ +V F ++ A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 106 -HLNESELHGRQLKVTV--KRTNVP 127
++ EL+GRQ++V + +R++ P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 31 DPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKG 89
D + +S A + V+ VFV N+ T ++V F G + + + D+ G KG
Sbjct: 38 DEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKG 97
Query: 90 YAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119
YA VE+ + EA+ N+++L G+ +KV
Sbjct: 98 YALVEYETQKEANEAIDQSNDTDLLGQNVKV 128
>UNIPROTKB|J9PA68 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:54033
OMA:YRFGSSR GeneTree:ENSGT00690000102191 EMBL:AAEX03016434
RefSeq:XP_535558.1 ProteinModelPortal:J9PA68
Ensembl:ENSCAFT00000043040 GeneID:478383 KEGG:cfa:478383
Uniprot:J9PA68
Length = 238
Score = 121 (47.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 101
+EE D R+VFVGN++ E + + F G + +VTI D+ G+PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKTFGFVCFKHPESV 63
Query: 102 QEALHL-NESELHGRQLKV 119
A+ L N L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 121 (47.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAV 101
+EE D R+VFVGN++ E + + F G + +VT+ D+ G+PK + +V F E+V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESV 63
Query: 102 QEALHL-NESELHGRQLKV 119
A+ L N L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>UNIPROTKB|F1PL96 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:AAEX03013583
Ensembl:ENSCAFT00000009460 Uniprot:F1PL96
Length = 413
Score = 124 (48.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/136 (26%), Positives = 64/136 (47%)
Query: 19 HAKVGNEMASKQDPAAGGSSLANRE-EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 77
++ + E +++ A E ++ +VFVG +D E++ F G+V V
Sbjct: 11 NSTISREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEV 70
Query: 78 TIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV--TVKRTNV--PGMKQHR 133
I TD+ G KGY +V F VQ+ + ++ HG++LK+ +++ N+ G +
Sbjct: 71 KIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLCEKGAYHVQ 129
Query: 134 PR----RPNPFMVYQS 145
PR P P +QS
Sbjct: 130 PRPLVFNPPPPPQFQS 145
>ASPGD|ASPL0000043989 [details] [associations]
symbol:AN1517 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003676 ProteinModelPortal:C8VMQ1
EnsemblFungi:CADANIAT00008145 Uniprot:C8VMQ1
Length = 450
Score = 124 (48.7 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 33/132 (25%), Positives = 64/132 (48%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQDPAAGGS-SLANREEVDSR-SVFVGNVDYSCTPEEV 64
+++ + + +R+ A+ A K+ G + R + + + +VF+GN+ Y T E++
Sbjct: 228 DLDFDISQIREAAAQEAWAAAEKKQMTHGEKLDMLRRLQYEPKQTVFIGNLFYDVTAEDL 287
Query: 65 QQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESEL-HGRQLKVTVKR 123
++ G V V I D G KGY YV+F + A + A+ + GR++ + +
Sbjct: 288 KKQMAKYGVVEGVNIIYDSRGISKGYGYVQFSSNAAARRAIDAMHMRIFEGRRVTLYYAQ 347
Query: 124 TNVPG-MKQHRP 134
TN+ K +P
Sbjct: 348 TNITNSFKNKKP 359
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 115 (45.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 32/124 (25%), Positives = 62/124 (50%)
Query: 13 TALRQMHAKVGNEMASKQDPAAGGSSLANREEVD-SRSVFVGNVDYSCTPEEVQQHFQSC 71
T L +++ E++ +D GS + + S +++VGN+ + T E++Q+ F C
Sbjct: 7 TTLSGLNSDSYCEISQYRDQHFRGSRQLQEKSLKISSTLYVGNLSFYTTEEQIQELFSKC 66
Query: 72 GTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVP-GM 129
G V R+ + DK + P G+ +VE+ + A+ ++G +L + RT+ G
Sbjct: 67 GDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRF----INGTRLDDRIIRTDWDAGF 122
Query: 130 KQHR 133
K+ R
Sbjct: 123 KEGR 126
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 124 (48.7 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/123 (30%), Positives = 60/123 (48%)
Query: 9 EEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS-VFVGNVDYSCTPEEVQQH 67
EEE A + +K ++ PA EE D S +FVGN+ ++ + +
Sbjct: 203 EEEKPAKTEAPSKKRKAEEEEEAPA----KKTKTEESDKPSTLFVGNLSWNVDDAMLAEE 258
Query: 68 FQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESE-LHGRQLKV---TVK 122
F+ CGTV + TD+ G+ KG+ YV+F E ++A + + GR++KV T K
Sbjct: 259 FKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGK 318
Query: 123 RTN 125
TN
Sbjct: 319 ATN 321
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 123 (48.4 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 23 GNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD 82
G + + D A GG A++ E D+ +FVG + + + ++++ +F G V TI+ D
Sbjct: 70 GADGTAGDDGADGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMD 129
Query: 83 -KFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 117
G+ +G+ ++ F + V + L E L GRQ+
Sbjct: 130 PNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQI 165
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 122 (48.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 23 GNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD 82
G E A + G A++ E D+ +FVG + + + ++++ +F G V TI+ D
Sbjct: 20 GGEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMD 79
Query: 83 K-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQL 117
G+ +G+ ++ F +S++V L E L GRQ+
Sbjct: 80 SNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQI 115
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 124 (48.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 35/120 (29%), Positives = 62/120 (51%)
Query: 28 SKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN-RVTIRTDKFGQ 86
++++PAA S + EE S ++FVGN+ ++ T E + Q F+ G ++ R+ D G+
Sbjct: 258 AEEEPAAA-SKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDT-GR 315
Query: 87 PKGYAYVEFLQSEAVQEALH-LNESELHGRQLKV---TVKRTNVP--GMKQHRPRRPNPF 140
+G+ YVEF + +A + E E+ GR++ + T + N G K+ R F
Sbjct: 316 SRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSF 375
Score = 113 (44.8 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 27/95 (28%), Positives = 53/95 (55%)
Query: 38 SLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFL 96
S ++ +S ++FVGN+ +S + V + F G V + + TD + G+PKG+ YV++
Sbjct: 374 SFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYS 433
Query: 97 QSEAVQEALH-LNESELHGRQLKV--TVKRTNVPG 128
+ ++A + L +E+ GR +++ + R N G
Sbjct: 434 SVDEARKAYNELQGAEIDGRPIRLDFSTPRANNGG 468
Score = 46 (21.3 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS 49
E EEEA A + AK E + ++ SS ++ E S S
Sbjct: 200 ESEEEAPAKAKGDAKTSKEESDSDSDSSESSSDSDEESGSSGS 242
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 118 (46.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 35 GGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYV 93
GG A + S+ + N+ Y TP ++++ F+ G + V I DK+ Q KG+ +V
Sbjct: 6 GGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
Query: 94 EFLQSEAVQEALHLNESEL-HGRQLKVTVKRTNVP 127
F + + AL + +L GR+L+VT+ + + P
Sbjct: 66 RFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRP 100
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 118 (46.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 35 GGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYV 93
GG A + S+ + N+ Y TP ++++ F+ G + V I DK+ Q KG+ +V
Sbjct: 6 GGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
Query: 94 EFLQSEAVQEALHLNESEL-HGRQLKVTVKRTNVP 127
F + + AL + +L GR+L+VT+ + + P
Sbjct: 66 RFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRP 100
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 125 (49.1 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 34/121 (28%), Positives = 64/121 (52%)
Query: 6 KEMEE-EATAL--RQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
K +EE + T + R + E QD G +S + E S+++ + N+ YS T E
Sbjct: 454 KTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGE---SKTLVLSNLSYSATEE 510
Query: 63 EVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKVTV 121
+Q+ F+ + + ++ G+ KGYA++EF E +EAL+ N+ E+ GR +++ +
Sbjct: 511 TLQEVFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 567
Query: 122 K 122
+
Sbjct: 568 Q 568
Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 6 KEMEEEATALRQMHAKVGNEMAS-KQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEV 64
+E EEE +++ K EMA K P A + E S ++FVGN++++ + E+
Sbjct: 274 EEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPEL 333
Query: 65 QQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
+ N + + + G + + YV+F +E +++AL L ++ G ++K+
Sbjct: 334 KTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 388
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 121 (47.7 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
E D R++FVGN+D T E + + F G V +V I DK G+ K +A+V F E+V
Sbjct: 7 EAD-RTLFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQKQFAFVSFKHEESVPY 65
Query: 104 ALHL-NESELHGRQLKV 119
++L N +L+GR + +
Sbjct: 66 GMNLLNGIKLYGRPINI 82
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 115 (45.5 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 29/98 (29%), Positives = 54/98 (55%)
Query: 29 KQDPAA-GGSSLANRE-----EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD 82
+Q PA G+ A+R V ++ +FVG + + T +E + +F++ G V+ I D
Sbjct: 85 EQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMID 144
Query: 83 KFGQ-PKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119
+ Q P+G+ +V F ++V LH +L+G+Q++V
Sbjct: 145 QTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEV 182
Score = 43 (20.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 138 NPFMVYQSRGAIIPPFLYSPYGYG 161
N +M Q+ G+ PP+ S YG G
Sbjct: 226 NRYMQPQNTGSGYPPYGGSGYGTG 249
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 124 (48.7 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 32/108 (29%), Positives = 57/108 (52%)
Query: 16 RQMHAKVGNEMASKQD-PA---AGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ----QH 67
R++ + E + + PA G+ + + D + +FV D S + ++++ +H
Sbjct: 365 REIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREH 424
Query: 68 FQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHG 114
F SCG + V++ D+ G KG AY+EF SE ++AL LN S++ G
Sbjct: 425 FSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKALELNGSDMGG 470
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 7 EMEEEATALRQMHAK-VGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQ 65
E EEE + + V E +S + P + A S+++F N+ ++ +V+
Sbjct: 259 EDEEETPKKKSSDVEMVDAEKSSAKQPKTPSTPAAG----GSKTLFAANLSFNIERADVE 314
Query: 66 QHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124
F+ G V V T++ G +G+ +VEF SE Q+AL + L GR++++ + +
Sbjct: 315 NFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQE 374
Query: 125 NVPGMKQHRP 134
G + RP
Sbjct: 375 R--GERGERP 382
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 122 (48.0 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 28/105 (26%), Positives = 57/105 (54%)
Query: 13 TALRQMHAKVGNEMASKQDPAAGGSSL-ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 71
TAL + + EM+ + A GS + A++ + D +F+G + + + +++ ++
Sbjct: 30 TALSRPAMEDATEMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRF 89
Query: 72 GTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGR 115
G V TI+TD G+ +G+ +V F + +V++ L L E +L G+
Sbjct: 90 GEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGK 134
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 121 (47.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 107
R +FV N+ +S + ++ + F CGTVN V I K G+ +G+A+V E Q A+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 108 NES-ELHGRQLKVTVKRTNVPGMKQHRPRRPN 138
++ ++ GR + V+ R K+ P+ PN
Sbjct: 155 FDTFQVSGRIISVSFARR----FKKPTPKSPN 182
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 53 GNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES 110
GN+ Y T E+++ F G V + D+ G+PKGY + E+ E A+ +LN
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 111 ELHGRQLKV 119
E GR L+V
Sbjct: 62 EFSGRALRV 70
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 123 (48.4 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 26/91 (28%), Positives = 52/91 (57%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL- 105
+++FV V+Y T ++++ F+ G + R+ + + G+P+GYA++E+ + A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 106 HLNESELHGRQLKVTVKRTNVPGMKQHRPRR 136
H + ++ GR++ V V+R +K RPRR
Sbjct: 163 HADGKKIDGRRVLVDVERGRT--VKGWRPRR 191
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 124 (48.7 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 33/129 (25%), Positives = 65/129 (50%)
Query: 7 EMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEV---------DSRSVFVGNVDY 57
E + EA A + + K G E+ + R+E +S+++ + N+ Y
Sbjct: 437 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSY 496
Query: 58 SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQ 116
S T E +++ F+ + + + G+PKGYA++EF E +EAL+ N+ E+ GR
Sbjct: 497 SATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRT 553
Query: 117 LKVTVKRTN 125
+++ ++ +N
Sbjct: 554 IRLELQGSN 562
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 123 (48.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 52 VGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEALHLNES 110
+GN+ + T ++ F CG N V I DK + PKG+ YVEF + +++AL L+ +
Sbjct: 86 IGNLSFDATSGDISDLFADCGVTN-VRIVEDKLTKAPKGFGYVEFETVDGLKKALDLSGA 144
Query: 111 ELHGRQLKVTV 121
L GR ++V++
Sbjct: 145 TLQGRSIRVSI 155
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 124 (48.7 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 39/137 (28%), Positives = 65/137 (47%)
Query: 9 EEEATALRQMHAKVGNEMAS-----KQDPAAGGSSLA---NREEVDSRSVFVGNVDYSCT 60
+E+ LRQ + G E K+ P+ + + D+ +VFV N+ Y+ T
Sbjct: 541 QEDKDPLRQREHESGPEKPDHPTNQKEKPSTSRKDVPKVLHDSSKDNITVFVSNLSYNMT 600
Query: 61 PEEVQ--QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLK 118
EV+ + F+SCG V++V G +GY YVEF ++ +AL ++ + GR +
Sbjct: 601 DPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMF 660
Query: 119 VT--VKRTNVPGMKQHR 133
V+ V + P K R
Sbjct: 661 VSPCVDKNKNPDFKVFR 677
Score = 114 (45.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 24/84 (28%), Positives = 49/84 (58%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE++ ++ G V + + T++ G+PKG AYVE+ +++A Q
Sbjct: 682 LEKHKLFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQA 741
Query: 104 ALHLNESELHGRQLKVTVKRTNVP 127
L ++ + +KV + +N P
Sbjct: 742 VLKMDGLTIKEHVIKVAI--SNPP 763
Score = 44 (20.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 4 RLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANR 42
R K E+EA RQ K S+ + A + NR
Sbjct: 486 RAKAAEKEAALARQEEEKAEQRKQSRAEKKASKKAKKNR 524
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 115 (45.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 27 ASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFG 85
+ Q+ A G A++ E D+ +FVG + + + ++++ +F G V TI+ D G
Sbjct: 53 SGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 112
Query: 86 QPKGYAYVEFLQSEAVQEALHLNESELHGR 115
+ +G+ ++ F S +V++ L E L GR
Sbjct: 113 RSRGFGFILFKDSSSVEKVLDQKEHRLDGR 142
Score = 38 (18.4 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 155 YSPYGY 160
YSPYGY
Sbjct: 294 YSPYGY 299
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 115 (45.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 27 ASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFG 85
+ Q+ A G A++ E D+ +FVG + + + ++++ +F G V TI+ D G
Sbjct: 54 SGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 86 QPKGYAYVEFLQSEAVQEALHLNESELHGR 115
+ +G+ ++ F S +V++ L E L GR
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGR 143
Score = 38 (18.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 155 YSPYGY 160
YSPYGY
Sbjct: 295 YSPYGY 300
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 113 (44.8 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 32/124 (25%), Positives = 62/124 (50%)
Query: 13 TALRQMHAKVGNEMASKQDPAAGGSSLANREEVD-SRSVFVGNVDYSCTPEEVQQHFQSC 71
T L +++ E++ +D GS + + S +++VGN+ + T E++Q+ F C
Sbjct: 7 TTLSGLNSDSYCEISRYRDQHFRGSKKLQEKFLKISSTLYVGNLSFYTTEEQIQELFSKC 66
Query: 72 GTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVP-GM 129
G V R+ + DK + P G+ +VE+ + A+ ++G +L + RT+ G
Sbjct: 67 GDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRF----INGTRLDDRIVRTDWDAGF 122
Query: 130 KQHR 133
K+ R
Sbjct: 123 KEGR 126
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 104 (41.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 50 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEALHLN 108
+FV + +S E ++ HF G + + D+ + KG+ +V+F E+VQ A++ +
Sbjct: 6 IFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAIN-S 64
Query: 109 ESELHGRQLKVTVKRTNVPGMKQHRPRR 136
++E++GR K+ V K++ P++
Sbjct: 65 DNEINGR--KLVVNEALAKDFKENTPKQ 90
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 120 (47.3 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 41/162 (25%), Positives = 74/162 (45%)
Query: 12 ATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 71
A A A G E S + + G A++ E D +F+G + + T ++++ +F
Sbjct: 11 AAAAATAAASGGTEGGSAE--SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKF 68
Query: 72 GTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMK 130
G V T++ D G+ +G+ +V F +SE+V + + E +L+G+ + KR MK
Sbjct: 69 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV--IDPKRAKA--MK 124
Query: 131 QHRPRRPNPFMVYQSRGAIIPPFLYSPY--GYGKIPRFRMPM 170
P + F+ S P Y G+G++ +PM
Sbjct: 125 TKEPVK-KIFVGGLSPDT--PEEKIREYFGGFGEVESIELPM 163
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 120 (47.3 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 28/105 (26%), Positives = 55/105 (52%)
Query: 30 QDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPK 88
Q A G A++ E D +FVG + + T ++++ +F G V T++ D G+ +
Sbjct: 36 QGEAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSR 95
Query: 89 GYAYVEFLQSEAVQEALHLNESELHGRQL---KVTVKRTNVPGMK 130
G+ +V F ++E+V++ + E +L+G+ + K +T P K
Sbjct: 96 GFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKK 140
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 120 (47.3 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 39/151 (25%), Positives = 71/151 (47%)
Query: 23 GNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD 82
G E S + A G A++ E D +F+G + + T ++++ +F G V T++ D
Sbjct: 53 GTEGGSTE--AEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLD 110
Query: 83 KF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFM 141
G+ +G+ +V F +SE+V + + E +L+G+ + KR MK P + F+
Sbjct: 111 PITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV--IDPKRAKA--MKTKEPVK-KIFV 165
Query: 142 VYQSRGAIIPPFLYSPY--GYGKIPRFRMPM 170
S P Y G+G++ +PM
Sbjct: 166 GGLSPDT--PEEKIREYFGGFGEVESIELPM 194
>FB|FBgn0030571 [details] [associations]
symbol:CG14414 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:AE014298
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 FlyBase:FBgn0030571
UniGene:Dm.14675 GeneID:32394 KEGG:dme:Dmel_CG14414
GenomeRNAi:32394 NextBio:778237 RefSeq:NP_727783.3
ProteinModelPortal:Q9VY29 SMR:Q9VY29 UCSC:CG14414-RB
InParanoid:Q9VY29 PhylomeDB:Q9VY29 ArrayExpress:Q9VY29 Bgee:Q9VY29
Uniprot:Q9VY29
Length = 205
Score = 116 (45.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 33 AAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK----FGQPK 88
+ GG N EE +R ++VGN+D T ++ + Q CG + + + K GQ +
Sbjct: 14 SGGGGGGGNPEE--ARRIWVGNLDSRITEFQLLKLMQKCGAIEKFDMLFHKGGPMVGQSR 71
Query: 89 GYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNP 139
GYA+V F Q+E AL L+ + + R + V + + N+ K ++P P
Sbjct: 72 GYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAK-NI---KYDETQKPKP 119
>UNIPROTKB|F1MYI2 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GeneTree:ENSGT00410000025635 PANTHER:PTHR23003:SF6
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00903735
Ensembl:ENSBTAT00000028022 ArrayExpress:F1MYI2 Uniprot:F1MYI2
Length = 549
Score = 122 (48.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 41/132 (31%), Positives = 61/132 (46%)
Query: 8 MEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRS-VFVGNVDYSCTPEEVQQ 66
M++ A L + H+ G + K+DP + A ++ S VFV N+DY +++++
Sbjct: 1 MKKAAEVLNK-HSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKE 59
Query: 67 HFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQS-EAVQEALHLNESELHGRQLKVTVKRTN 125
F G V R I DK G+ +G V F QS EAVQ N L R + V +
Sbjct: 60 VFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 119
Query: 126 VPGMKQHRPRRP 137
+P P RP
Sbjct: 120 LPKGDFFPPERP 131
>POMBASE|SPBC3B9.11c [details] [associations]
symbol:ctf1 "mRNA cleavage and polyadenylation
specificity factor complex subunit Ctf1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
NextBio:20802132 Uniprot:O43040
Length = 363
Score = 120 (47.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/117 (31%), Positives = 55/117 (47%)
Query: 50 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLQSEAVQEALH-L 107
VFVGN+ Y + +++ + F G V + D + G KGY + EF SE A+ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 108 NESELHGRQLKVTVKRTNVPGMKQ--HRPRRPNPFMVYQS------RGAIIPPFLYS 156
N SEL R+++V +N P Q R + +M Q+ IPP L+S
Sbjct: 69 NNSELGPRKIRVEFP-SNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVLHS 124
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 120 (47.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 46 DSRSVFVGNVDYSCTPEEVQ--QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
D+ +VFV N+ Y+ T EV+ + F+SCG V++V G +GY YVEF ++ +
Sbjct: 635 DNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQ 694
Query: 104 ALHLNESELHGRQLKVT--VKRTNVPGMK 130
AL ++ + GR + V+ V + P K
Sbjct: 695 ALGMDRKVVEGRPMFVSPCVDKNKNPDFK 723
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 9 EEEATALRQMHAKVGNEMASKQDPAAGGSSLANR 42
E+EA RQ K S+ + A + NR
Sbjct: 569 EKEAALARQEEEKAEQRKQSRAEKKASKKAKKNR 602
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/90 (26%), Positives = 52/90 (57%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 107
R++FVG ++Y + ++++ F++ G + ++T+ D+ G+P+GYA++E+ + A
Sbjct: 104 RTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKK 163
Query: 108 NES-ELHGRQLKVTVKRTNVPGMKQHRPRR 136
+ ++ G++L V +R K PRR
Sbjct: 164 ADGIKVDGKRLVVDYERGRT--QKTWLPRR 191
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 118 (46.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/135 (29%), Positives = 64/135 (47%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-L 107
+VFV ++ T E+ QHFQ G V I+ D G+ KGY +V F E+ A+ +
Sbjct: 151 NVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGM 210
Query: 108 NESELHGRQLKVTVKRTNVPGMKQHRPRRPN--PFMVYQSRGAII----PPFL-YSPYGY 160
+ + G+ LKV +K+ ++ + P +P P Y + II P++ + YG
Sbjct: 211 HGFYVSGKHLKVQLKKGEEHYVQMNTPAQPQLTPAQPYSVQQPIIGNHHQPYMTHLMYGG 270
Query: 161 GKIPRFRMPMRYSPY 175
P MRY+ Y
Sbjct: 271 MDSPN---QMRYNTY 282
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 118 (46.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/135 (29%), Positives = 64/135 (47%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-L 107
+VFV ++ T E+ QHFQ G V I+ D G+ KGY +V F E+ A+ +
Sbjct: 151 NVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGM 210
Query: 108 NESELHGRQLKVTVKRTNVPGMKQHRPRRPN--PFMVYQSRGAII----PPFL-YSPYGY 160
+ + G+ LKV +K+ ++ + P +P P Y + II P++ + YG
Sbjct: 211 HGFYVSGKHLKVQLKKGEEHYVQMNTPAQPQLTPAQPYSVQQPIIGNHHQPYMTHLMYGG 270
Query: 161 GKIPRFRMPMRYSPY 175
P MRY+ Y
Sbjct: 271 MDSPN---QMRYNTY 282
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 120 (47.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLN 108
S+FV N+ + CTPE++++ F + G V I T K G +G VEF ++E+VQ+A+
Sbjct: 123 SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKF 181
Query: 109 ESELHGRQLKVTVKRTNVP 127
+ L K+ V++ N P
Sbjct: 182 DGALF-MDRKLMVRQDNPP 199
Score = 108 (43.1 bits), Expect = 0.00065, P = 0.00065
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 37 SSLANREEVDSR-SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEF 95
S A REE+D+ VF+ N+ YS + ++ F+ CG V R + D G +G+ V +
Sbjct: 207 SKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIY 266
Query: 96 -LQSEAVQEALHLNESELHGRQLKVTVKRTN 125
+ E ++ N E+ GR L+V R N
Sbjct: 267 PTEDEMIRAIDTFNGMEVEGRVLEVREGRFN 297
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 119 (46.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 40/171 (23%), Positives = 82/171 (47%)
Query: 3 IRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
IR E+ ++ +++ + KV ++ ++ G + +R ++ +FVG + + T E
Sbjct: 81 IRKHELYQQPFSMQFLERKVQQMNGGLREMSSNG--VTSR----TKKIFVGGLSSNTTEE 134
Query: 63 EVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121
E + +F+ G V + D +P+G+ +V + ++V+ + N EL + +V V
Sbjct: 135 EFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDK--RVEV 192
Query: 122 KRTNVP--GMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRFRMPM 170
KR +P G++ + N Y S A P++ GYG + +F P+
Sbjct: 193 KRA-IPKEGIQSNNGNAVNIPPSYSSFQAT--PYVPEQNGYGMVLQFPPPV 240
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 121 (47.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 43 EEVDSRS-VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEA 100
E VD + V++GN+ + T ++++ F C +N V + +K G+ KGYA+V+F S +
Sbjct: 256 EMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVS 314
Query: 101 VQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPN 138
V AL L++ + GR +K+ + P H P N
Sbjct: 315 VAIALKLDQQVICGRPVKICCALKDRPAT-DHTPGETN 351
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 120 (47.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/117 (25%), Positives = 62/117 (52%)
Query: 10 EEATALRQMHAKVGNEMASKQDPAA-GGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHF 68
E++ A+ + +++ + + DP+ +++ E R ++VGN+D + T + ++Q+F
Sbjct: 37 EQSVAV-EGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYF 95
Query: 69 QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 125
Q G + + I DK + YA+VE+ QS AL L+G+Q++ + + N
Sbjct: 96 QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT----LNGKQIENNIVKIN 148
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 101 (40.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEA 100
+E R +F+G + + T E ++ HF+ GT+ V +R + +G+ +V + E
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 101 VQEALHLNESELHGRQLKVTV 121
V A++ ++ GR ++ T+
Sbjct: 68 VDAAMNARPHKVDGRVVEATM 88
>UNIPROTKB|Q9GZT3 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
CTD:81892 eggNOG:NOG291073 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 EMBL:AY860853 EMBL:AJ272055 EMBL:AF253980
EMBL:AF271779 EMBL:BC017895 IPI:IPI00009922 RefSeq:NP_001254792.1
RefSeq:NP_001254793.1 RefSeq:NP_112487.1 UniGene:Hs.655105
ProteinModelPortal:Q9GZT3 SMR:Q9GZT3 IntAct:Q9GZT3 STRING:Q9GZT3
PhosphoSite:Q9GZT3 DMDM:74762723 PaxDb:Q9GZT3 PeptideAtlas:Q9GZT3
PRIDE:Q9GZT3 DNASU:81892 Ensembl:ENST00000557342 GeneID:81892
KEGG:hsa:81892 UCSC:uc001xue.4 GeneCards:GC14P078175
HGNC:HGNC:20495 HPA:HPA020291 MIM:610211 neXtProt:NX_Q9GZT3
PharmGKB:PA134892132 InParanoid:Q9GZT3 PhylomeDB:Q9GZT3
ChiTaRS:SLIRP GenomeRNAi:81892 NextBio:72246 ArrayExpress:Q9GZT3
Bgee:Q9GZT3 CleanEx:HS_C14orf156 Genevestigator:Q9GZT3
GermOnline:ENSG00000119705 Uniprot:Q9GZT3
Length = 109
Score = 101 (40.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 33 AAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYA 91
AA G++ A R ++ FV + ++ ++++HF G V R + DK G +G
Sbjct: 5 AARGAA-ALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLG 63
Query: 92 YVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVP 127
+V+F E ++ AL + G +++V +R +P
Sbjct: 64 WVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLP 99
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 122 (48.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 46 DSRSVFVGNVDYSCTPEEVQ--QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQE 103
D+ +VFV N+ Y+ T EV+ + F+SCG V++V G +GY YVEF ++ +
Sbjct: 596 DNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQ 655
Query: 104 ALHLNESELHGRQLKVT--VKRTNVPGMKQHR 133
AL ++ + GR + V+ V + P K R
Sbjct: 656 ALGMDRKVVEGRPMFVSPCVDKNKNPDFKVFR 687
Score = 119 (46.9 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 32/126 (25%), Positives = 63/126 (50%)
Query: 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL-QSEAVQE 103
++ +F+ + +SCT EE++ ++ G V + + T++ G+PKG AYVE+ +++A Q
Sbjct: 692 LEKHKLFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQA 751
Query: 104 ALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKI 163
L ++ + +KV + +N P K P+ ++ +P +Y G G+
Sbjct: 752 VLKMDGLTIKEHVIKVAI--SNPPLRKL-----PDKAEAGRASQFAVPRQIYGARGKGRT 804
Query: 164 PRFRMP 169
MP
Sbjct: 805 QLSMMP 810
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 119 (46.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 1 MKIRLKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCT 60
MK L E+ E R M K + + D +A + SR +FVGN+ + T
Sbjct: 196 MKAVL-ELSESHLNGRNMLIKDSENYSGRPDK---DDLVAMSKNPPSRILFVGNLSFDVT 251
Query: 61 PEEVQQHFQSCGTVNRVTIRT-DKFGQPKGYAYVEFLQSEAVQEALHLNES-ELHGRQLK 118
+ +++HFQ CG + ++ + T + G+ KG+A+++F E AL ++ GR L+
Sbjct: 252 DDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALKDKSCRKIAGRPLR 311
Query: 119 V 119
+
Sbjct: 312 M 312
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 115 (45.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 36/125 (28%), Positives = 60/125 (48%)
Query: 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYVEFLQSEAVQEALH- 106
S+ V N+ Y +P+ +++ F+ G V V I D++ + +G+A+V F ++A+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 107 LNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGAIIPPFLYSPYGYGKIPRF 166
++ + L GR+L+V + R P H R P PP Y GYG+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGP-------------PPRRYGSSGYGR--RS 119
Query: 167 RMPMR 171
R P R
Sbjct: 120 RSPRR 124
>TAIR|locus:2076121 [details] [associations]
symbol:AT3G23900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010638 "positive
regulation of organelle organization" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR001298 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
SMART:SM00557 EMBL:CP002686 Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR014756 SUPFAM:SSF81296 InterPro:IPR017868
Pfam:PF00630 PROSITE:PS50194 IPI:IPI00521323 RefSeq:NP_001189958.1
RefSeq:NP_189032.2 UniGene:At.37625 UniGene:At.73245
ProteinModelPortal:F4J5A7 SMR:F4J5A7 PRIDE:F4J5A7
EnsemblPlants:AT3G23900.1 EnsemblPlants:AT3G23900.3 GeneID:821973
KEGG:ath:AT3G23900 OMA:HIAYVEY Uniprot:F4J5A7
Length = 987
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 44/139 (31%), Positives = 65/139 (46%)
Query: 12 ATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSC 71
A AL Q HA A + G ++ + + V N+ S T E+++Q F C
Sbjct: 317 AQAL-QAHASQMQAQAQSNKGSLGSPEKGENGDL-KKFLQVSNLSPSLTTEQLRQLFSFC 374
Query: 72 GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQ 131
GTV +I TD K AY+E+ SE AL LN +E+ GR L V + ++ +P
Sbjct: 375 GTVVDCSI-TDS----KHIAYIEYSNSEEATAALALNNTEVFGRALNVEIAKS-LP---- 424
Query: 132 HRPRRPN-----PFMVYQS 145
H+P N P M+ Q+
Sbjct: 425 HKPSSNNSSSSLPLMMQQA 443
>POMBASE|SPBC365.04c [details] [associations]
symbol:SPBC365.04c "RNA-binding protein, involved in
ribosome biogenesis (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISS;IDA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC365.04c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000001011 KO:K14789 OMA:GPRFILF OrthoDB:EOG4JHGRC
PIR:T40311 RefSeq:NP_596033.1 ProteinModelPortal:Q9Y7Y3
STRING:Q9Y7Y3 PRIDE:Q9Y7Y3 EnsemblFungi:SPBC365.04c.1
GeneID:2540924 KEGG:spo:SPBC365.04c NextBio:20802039 Uniprot:Q9Y7Y3
Length = 233
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 50 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFL--QSEAVQEALH 106
+FVGN+ + E +Q HF+ G V V I TDK G+ KGYA+VEF+ +++ + +AL
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 107 LNESELHGRQLKV 119
+ + R++ +
Sbjct: 154 FHHTIYKERKINI 166
>UNIPROTKB|G4ND38 [details] [associations]
symbol:MGG_00985 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:CM001235 Gene3D:3.30.70.330
GO:GO:0003676 RefSeq:XP_003717964.1 ProteinModelPortal:G4ND38
EnsemblFungi:MGG_00985T0 GeneID:2674402 KEGG:mgr:MGG_00985
Uniprot:G4ND38
Length = 454
Score = 119 (46.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 28 SKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRT-DKFGQ 86
SK AAG ++ A +++ ++VGN+ Y T E ++ F+ CGT+ + T + G+
Sbjct: 223 SKAGAAAGATAAA--PSTNTKKIYVGNLPYDATEETLRWQFEKCGTIEWAKVATFEDSGK 280
Query: 87 PKGYAYVEFLQSEAVQEAL 105
KGY +V F S A A+
Sbjct: 281 CKGYGWVRFADSAACDWAV 299
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 119 (46.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH 106
S S+FVGN+ Y TPE++ + F G V R I T + G +G VEF S+ V A+
Sbjct: 160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIR 218
Query: 107 LNESELHGRQLKVTVKRTNVPGMKQHRPRR 136
+ K+ V++ N P + R+
Sbjct: 219 QYDGAFF-MDRKIFVRQDNPPPSNNIKERK 247
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 100 (40.3 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 50 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLQSEAVQEALHLN 108
+F+G + + T ++++ +F G V T++ D G+ +G+ +V F +SE+V + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 109 ESELHGRQLKVTVKRTNVPGMKQHRP 134
E +L+G+ + KR MK P
Sbjct: 61 EHKLNGKV--IDPKRAKA--MKTKEP 82
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 118 (46.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/121 (28%), Positives = 64/121 (52%)
Query: 6 KEMEE-EATAL--RQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPE 62
K +EE + T + R + E QD G +S + E S+++ + N+ YS T E
Sbjct: 98 KTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGE---SKTLVLSNLAYSATEE 154
Query: 63 EVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKVTV 121
+Q+ F+ + + ++ G+ KGYA++EF E +EAL+ N+ E+ GR +++ +
Sbjct: 155 TLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 211
Query: 122 K 122
+
Sbjct: 212 Q 212
>UNIPROTKB|P09406 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8355 "Xenopus laevis" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 InterPro:IPR022023
Pfam:PF12220 EMBL:X12430 PIR:S02016 UniGene:Xl.5366
ProteinModelPortal:P09406 Xenbase:XB-GENE-992825 HOVERGEN:HBG012300
Uniprot:P09406
Length = 471
Score = 119 (46.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 28/94 (29%), Positives = 53/94 (56%)
Query: 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK----FGQPKGYAYVEFLQSEAVQE 103
+++FV V+Y T ++++ F+ G + R+ I +K G+P+GYA++E+ +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHS 162
Query: 104 AL-HLNESELHGRQLKVTVKRTNVPGMKQHRPRR 136
A H + ++ GR++ V V+R +K RPRR
Sbjct: 163 AYKHADGKKIDGRRVLVDVERGRT--VKGWRPRR 194
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 112 (44.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/90 (30%), Positives = 52/90 (57%)
Query: 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLQSEAVQEA 104
+S +++VGN+ + T E+V + F CG + R+ + D+F + P G+ +VE+ Q+A
Sbjct: 46 NSTTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTH---QDA 102
Query: 105 LHLNESELHGRQLKVTVKRTNV-PGMKQHR 133
+ + + G +L V RT++ PG ++ R
Sbjct: 103 IDCMKY-IGGTKLDERVIRTDLDPGFEEGR 131
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 116 (45.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 12 ATALRQMHA-KVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQS 70
+TAL A V +A+ ++ + GSSL +E+ + +FV N+ + T E + + F
Sbjct: 40 STALPIARAFSVSRTLANVEENS--GSSLPRQEQPNG--IFVRNLVFDATNEHLAEAFSQ 95
Query: 71 CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LNESELHGRQLKVTVK-RTNVPG 128
G V + D G KG+ ++ F EA Q+A N + HGR++ V + + + PG
Sbjct: 96 YGNVVDAKVARDARGLSKGFGFIYFETPEAAQKACEEANNTFWHGRRINVAPRIKASKPG 155
Score = 114 (45.2 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 35 GGSSLANREE-VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAY 92
G N+EE + S+++GN+ Y T + FQ + V I D+ G P+G+A+
Sbjct: 155 GNRDAMNQEERTPTSSLYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAH 214
Query: 93 VEFLQSEAVQEALH-LNESELHGRQLKVTVKRTNVP 127
+F E+ +A+ + EL GR L+V VP
Sbjct: 215 ADFKDVESATKAVEKVKLMELMGRTLRVDYSTPRVP 250
>SGD|S000006099 [details] [associations]
symbol:CBC2 "Small subunit of the heterodimeric cap binding
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA;ISS;IDA] [GO:0000243 "commitment complex"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000006099 GO:GO:0048471 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006949 GO:GO:0051028
GO:GO:0000398 GO:GO:0000243 eggNOG:COG0724 GO:GO:0000339
HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 KO:K12883
GeneTree:ENSGT00390000003197 OrthoDB:EOG4W11PG EMBL:U39665
EMBL:Z73534 EMBL:AY692949 PIR:S65190 RefSeq:NP_015147.1
ProteinModelPortal:Q08920 SMR:Q08920 DIP:DIP-1117N IntAct:Q08920
MINT:MINT-552911 STRING:Q08920 PaxDb:Q08920 EnsemblFungi:YPL178W
GeneID:855925 KEGG:sce:YPL178W CYGD:YPL178w OMA:CGFCFII
NextBio:980654 Genevestigator:Q08920 GermOnline:YPL178W
Uniprot:Q08920
Length = 208
Score = 113 (44.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 23/94 (24%), Positives = 52/94 (55%)
Query: 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFG-QPKGYAYVEF-LQSE 99
RE + S +++VGN+ + + E++ + F CGT+ R+ + D+F P G+ ++ + E
Sbjct: 40 RESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDE 99
Query: 100 AVQEALHLNESELHGRQLKVTVKRTNVPGMKQHR 133
A+ +L++++L + + + + PG + R
Sbjct: 100 ALNALKYLSDTKLDEKTITIDLD----PGFEDGR 129
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 116 (45.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/154 (24%), Positives = 69/154 (44%)
Query: 18 MHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV 77
M A+ + ++ + P G A++ + D +F+G + + + +++ + G V
Sbjct: 1 MQAEEQGDFSTDEFPE-GSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDC 59
Query: 78 TIRTDKF-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRR 136
TI+TD G+ +G+ +V F +E+V L L E +L G+ + KR +K P
Sbjct: 60 TIKTDPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKL--IDPKRAKA--IKGKEP-- 113
Query: 137 PNPFMVYQSRGAIIPPFLYSPYG-YGKIPRFRMP 169
P V I L +G YG+I +P
Sbjct: 114 PKKVFVGGLSPDITEEQLREYFGVYGEIESIELP 147
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 111 (44.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 24/90 (26%), Positives = 48/90 (53%)
Query: 27 ASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFG 85
+ Q+ A G A++ E D+ +FVG + + + ++++ +F G V TI+ D G
Sbjct: 49 SGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 86 QPKGYAYVEFLQSEAVQEALHLNESELHGR 115
+ +G+ ++ F + +V++ L E L GR
Sbjct: 109 RSRGFGFILFKDAASVEKVLDQKEHRLDGR 138
Score = 38 (18.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 155 YSPYGY 160
YSPYGY
Sbjct: 290 YSPYGY 295
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 116 (45.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 25/93 (26%), Positives = 52/93 (55%)
Query: 25 EMASKQDPAAGGSSL-ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK 83
EM+ + A GS + A++ + D +F+G + + + +++ ++ G V TI+TD
Sbjct: 6 EMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDP 65
Query: 84 F-GQPKGYAYVEFLQSEAVQEALHLNESELHGR 115
G+ +G+ +V F + +V++ L L E +L G+
Sbjct: 66 VTGRSRGFGFVLFKDAASVEKVLELKEHKLDGK 98
>UNIPROTKB|G3V2S9 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008044 HGNC:HGNC:20495 ChiTaRS:SLIRP
EMBL:AC008372 ProteinModelPortal:G3V2S9 SMR:G3V2S9
Ensembl:ENST00000557431 ArrayExpress:G3V2S9 Bgee:G3V2S9
Uniprot:G3V2S9
Length = 124
Score = 99 (39.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 33 AAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYA 91
AA G++ A R ++ FV + ++ ++++HF G V R + DK G +G
Sbjct: 5 AARGAA-ALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLG 63
Query: 92 YVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNVPGMKQHRPRRPNPFMVYQSRGA-II 150
+V+F E ++ AL + G +K ++ R K RP + N QS+ A
Sbjct: 64 WVQFSSEEGLRNALQQENHIIDG--VKESLFRDTQWTAKGERPPQANGRKAAQSQPARFT 121
Query: 151 PP 152
PP
Sbjct: 122 PP 123
WARNING: HSPs involving 205 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 176 176 0.00081 109 3 11 22 0.42 32
31 0.49 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 455
No. of states in DFA: 557 (59 KB)
Total size of DFA: 142 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.66u 0.07s 18.73t Elapsed: 00:00:02
Total cpu time: 18.68u 0.07s 18.75t Elapsed: 00:00:02
Start: Sat May 11 03:01:16 2013 End: Sat May 11 03:01:18 2013
WARNINGS ISSUED: 2