Query 030488
Match_columns 176
No_of_seqs 227 out of 1898
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 23:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.5E-24 1.5E-28 152.7 13.6 86 43-128 35-122 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-23 3.9E-28 139.9 12.3 80 45-124 17-98 (99)
3 3pgw_S U1-70K; protein-RNA com 99.9 1.1E-21 3.9E-26 161.2 19.0 83 44-126 99-183 (437)
4 3s8s_A Histone-lysine N-methyl 99.9 3.2E-22 1.1E-26 135.3 12.7 80 45-124 4-85 (110)
5 2fy1_A RNA-binding motif prote 99.9 5.8E-22 2E-26 135.2 13.4 83 44-126 4-87 (116)
6 2cqd_A RNA-binding region cont 99.9 1.5E-21 5E-26 132.9 15.3 84 41-125 11-96 (116)
7 2dgo_A Cytotoxic granule-assoc 99.9 2.4E-21 8.4E-26 131.6 16.2 86 41-126 9-96 (115)
8 2do0_A HnRNP M, heterogeneous 99.9 2.7E-21 9.3E-26 131.1 16.3 84 43-126 11-95 (114)
9 3q2s_C Cleavage and polyadenyl 99.9 5.7E-23 1.9E-27 155.8 8.8 78 46-123 67-148 (229)
10 3ex7_B RNA-binding protein 8A; 99.9 1.9E-22 6.5E-27 139.2 10.2 84 43-126 18-103 (126)
11 2cq0_A Eukaryotic translation 99.9 1.4E-21 4.8E-26 130.3 13.5 85 42-126 10-96 (103)
12 2dgs_A DAZ-associated protein 99.9 1.2E-21 4E-26 129.8 13.0 83 44-126 7-90 (99)
13 2d9p_A Polyadenylate-binding p 99.9 1.6E-21 5.5E-26 130.0 13.7 83 43-126 11-94 (103)
14 2lxi_A RNA-binding protein 10; 99.9 8.6E-23 2.9E-27 133.6 7.2 80 47-126 1-84 (91)
15 2do4_A Squamous cell carcinoma 99.9 1.9E-21 6.3E-26 129.0 13.8 84 43-126 13-97 (100)
16 2dnz_A Probable RNA-binding pr 99.9 1.2E-21 4.2E-26 128.6 12.7 82 45-126 3-86 (95)
17 2cpz_A CUG triplet repeat RNA- 99.9 1.8E-21 6.3E-26 132.3 13.9 84 43-126 21-106 (115)
18 1u6f_A Tcubp1, RNA-binding pro 99.9 2.1E-21 7E-26 136.2 14.6 83 43-125 38-122 (139)
19 2dnm_A SRP46 splicing factor; 99.9 6.3E-22 2.2E-26 132.0 11.2 84 43-126 9-94 (103)
20 2dnh_A Bruno-like 5, RNA bindi 99.9 2.6E-21 9E-26 129.3 13.9 83 44-126 12-98 (105)
21 1x5u_A Splicing factor 3B subu 99.9 1.5E-21 5.2E-26 130.5 12.6 84 43-126 11-96 (105)
22 1whw_A Hypothetical protein ri 99.9 1.5E-21 5.2E-26 129.2 12.4 83 44-126 5-89 (99)
23 2dng_A Eukaryotic translation 99.9 4.3E-21 1.5E-25 128.0 14.3 82 44-126 12-94 (103)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.2E-21 4.1E-26 130.3 11.1 83 44-126 9-93 (102)
25 3ucg_A Polyadenylate-binding p 99.9 1.6E-21 5.6E-26 126.5 11.4 83 46-128 5-88 (89)
26 2cph_A RNA binding motif prote 99.9 3.2E-21 1.1E-25 129.3 13.1 85 42-126 10-98 (107)
27 1x5s_A Cold-inducible RNA-bind 99.9 1.7E-21 5.8E-26 129.6 11.6 83 44-126 9-93 (102)
28 2cq3_A RNA-binding protein 9; 99.9 8.1E-21 2.8E-25 126.6 14.8 84 42-126 10-94 (103)
29 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.1E-21 7.3E-26 125.4 11.6 80 45-124 4-85 (87)
30 1x4h_A RNA-binding protein 28; 99.9 3.5E-21 1.2E-25 129.9 13.2 84 43-126 11-102 (111)
31 1wi8_A EIF-4B, eukaryotic tran 99.9 2.9E-21 1E-25 129.0 12.6 82 44-126 12-95 (104)
32 2dhg_A TRNA selenocysteine ass 99.9 2.3E-21 7.9E-26 129.4 12.1 83 44-126 6-91 (104)
33 1x5t_A Splicing factor 3B subu 99.9 1.6E-21 5.4E-26 128.3 11.1 82 45-126 3-87 (96)
34 3s7r_A Heterogeneous nuclear r 99.9 2.2E-21 7.7E-26 125.4 11.6 80 43-122 7-87 (87)
35 2lkz_A RNA-binding protein 5; 99.9 4.3E-22 1.5E-26 131.2 8.2 81 44-124 6-94 (95)
36 3md1_A Nuclear and cytoplasmic 99.9 3.4E-21 1.2E-25 123.3 12.2 79 47-125 1-81 (83)
37 2cqi_A Nucleolysin TIAR; RNA r 99.9 6.6E-21 2.3E-25 127.0 14.1 83 43-126 11-94 (103)
38 2dgp_A Bruno-like 4, RNA bindi 99.9 2E-21 6.7E-26 130.2 11.5 85 42-126 8-97 (106)
39 2cqc_A Arginine/serine-rich sp 99.9 3.1E-21 1E-25 126.6 12.1 82 43-124 11-94 (95)
40 2ywk_A Putative RNA-binding pr 99.9 1.8E-21 6.1E-26 127.8 10.9 82 43-124 12-94 (95)
41 2kn4_A Immunoglobulin G-bindin 99.9 1.3E-21 4.4E-26 140.0 10.8 83 44-126 67-151 (158)
42 1p27_B RNA-binding protein 8A; 99.9 2.2E-21 7.5E-26 129.9 11.2 83 43-125 19-103 (106)
43 2lea_A Serine/arginine-rich sp 99.9 5.1E-22 1.7E-26 139.0 8.4 120 5-127 8-129 (135)
44 2cpe_A RNA-binding protein EWS 99.9 3.6E-21 1.2E-25 130.4 12.3 85 42-126 10-104 (113)
45 4f25_A Polyadenylate-binding p 99.9 2.4E-21 8.1E-26 131.9 11.4 78 47-125 5-83 (115)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.8E-21 6.2E-26 125.2 10.1 80 44-123 4-85 (85)
47 1s79_A Lupus LA protein; RRM, 99.9 1.1E-21 3.7E-26 131.2 9.1 81 44-124 8-88 (103)
48 2cqg_A TDP-43, TAR DNA-binding 99.9 1.3E-20 4.4E-25 125.6 14.3 85 41-126 9-94 (103)
49 2e5h_A Zinc finger CCHC-type a 99.9 3.6E-21 1.2E-25 126.1 11.3 81 43-123 12-94 (94)
50 3p5t_L Cleavage and polyadenyl 99.9 5.3E-22 1.8E-26 129.4 7.0 79 48-126 2-84 (90)
51 1wez_A HnRNP H', FTP-3, hetero 99.9 2.6E-21 8.9E-26 129.1 10.3 81 44-125 12-92 (102)
52 2la6_A RNA-binding protein FUS 99.9 6E-21 2.1E-25 126.4 11.9 81 43-123 9-99 (99)
53 2dh8_A DAZ-associated protein 99.9 4.4E-21 1.5E-25 128.3 11.3 83 43-125 12-95 (105)
54 1oo0_B CG8781-PA, drosophila Y 99.9 3.5E-21 1.2E-25 129.8 10.9 84 43-126 22-107 (110)
55 2dgu_A Heterogeneous nuclear r 99.9 1E-20 3.5E-25 126.2 13.0 77 44-127 8-85 (103)
56 2x1f_A MRNA 3'-END-processing 99.9 5.4E-21 1.8E-25 125.9 11.4 79 47-125 2-82 (96)
57 1x4c_A Splicing factor, argini 99.9 9.8E-21 3.4E-25 127.4 12.9 77 45-127 13-95 (108)
58 3ulh_A THO complex subunit 4; 99.9 8E-21 2.7E-25 127.4 12.3 80 44-123 26-106 (107)
59 2jwn_A Embryonic polyadenylate 99.9 2.6E-21 9E-26 133.1 10.1 85 44-128 33-118 (124)
60 2khc_A Testis-specific RNP-typ 99.9 4.1E-21 1.4E-25 131.0 11.0 81 43-123 36-118 (118)
61 2cpf_A RNA binding motif prote 99.9 7.8E-21 2.7E-25 125.5 12.0 82 45-126 3-89 (98)
62 1x4b_A Heterogeneous nuclear r 99.9 4.7E-21 1.6E-25 130.4 11.1 82 44-125 24-106 (116)
63 2div_A TRNA selenocysteine ass 99.9 6.4E-21 2.2E-25 126.1 11.4 81 45-125 7-94 (99)
64 1x4a_A Splicing factor, argini 99.9 2.6E-20 8.8E-25 125.4 14.3 81 43-125 18-99 (109)
65 2m2b_A RNA-binding protein 10; 99.9 2.9E-21 9.8E-26 134.4 9.6 84 42-126 18-109 (131)
66 2dgv_A HnRNP M, heterogeneous 99.9 1.2E-20 4.2E-25 123.1 12.0 82 44-126 5-87 (92)
67 2cpy_A RNA-binding protein 12; 99.9 7.6E-22 2.6E-26 134.1 6.2 82 43-124 11-93 (114)
68 4a8x_A RNA-binding protein wit 99.8 5.4E-21 1.9E-25 123.6 9.8 81 46-126 3-86 (88)
69 2jrs_A RNA-binding protein 39; 99.8 1.1E-20 3.7E-25 127.3 11.6 83 43-125 22-106 (108)
70 2cqp_A RNA-binding protein 12; 99.8 6.3E-21 2.1E-25 125.9 10.0 82 44-125 12-95 (98)
71 2dgw_A Probable RNA-binding pr 99.8 2.2E-20 7.5E-25 121.7 12.5 81 44-125 7-87 (91)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-20 3.9E-25 136.3 11.9 85 43-127 68-154 (165)
73 2kxn_B Transformer-2 protein h 99.8 6.1E-21 2.1E-25 132.5 10.1 84 43-126 42-127 (129)
74 1wg5_A Heterogeneous nuclear r 99.8 2.6E-20 8.8E-25 124.5 12.4 81 44-124 12-93 (104)
75 2cq4_A RNA binding motif prote 99.8 3.6E-21 1.2E-25 130.6 8.2 82 43-124 21-103 (114)
76 3ns6_A Eukaryotic translation 99.8 1.3E-21 4.5E-26 130.0 5.8 79 46-124 5-92 (100)
77 3n9u_C Cleavage and polyadenyl 99.8 1.6E-20 5.6E-25 134.4 11.8 79 46-124 54-136 (156)
78 2db1_A Heterogeneous nuclear r 99.8 1.4E-20 4.9E-25 128.6 11.0 81 44-124 14-97 (118)
79 2fc9_A NCL protein; structure 99.8 2.9E-20 1E-24 123.4 12.1 80 43-125 11-91 (101)
80 2mss_A Protein (musashi1); RNA 99.8 3.6E-21 1.2E-25 121.0 7.1 74 49-122 1-75 (75)
81 2dgx_A KIAA0430 protein; RRM d 99.8 2E-20 6.7E-25 123.3 11.0 79 45-125 7-90 (96)
82 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-20 5.6E-25 126.6 10.6 84 43-126 21-105 (109)
83 2dis_A Unnamed protein product 99.8 2.5E-20 8.7E-25 125.3 11.5 82 45-126 6-93 (109)
84 2cpi_A CCR4-NOT transcription 99.8 3.1E-20 1.1E-24 125.6 11.3 84 43-126 11-102 (111)
85 2kt5_A RNA and export factor-b 99.8 5.6E-20 1.9E-24 126.5 12.8 83 43-125 31-114 (124)
86 2dnn_A RNA-binding protein 12; 99.8 1.3E-20 4.5E-25 127.1 9.3 78 46-124 15-92 (109)
87 2hgn_A Heterogeneous nuclear r 99.8 1.4E-21 4.9E-26 137.2 4.6 82 43-125 42-123 (139)
88 2err_A Ataxin-2-binding protei 99.8 1.6E-20 5.4E-25 126.6 9.6 85 40-125 22-107 (109)
89 1sjq_A Polypyrimidine tract-bi 99.8 1.9E-20 6.3E-25 125.1 9.7 77 44-125 13-92 (105)
90 2fc8_A NCL protein; structure 99.8 9.3E-20 3.2E-24 121.1 13.2 81 43-126 11-93 (102)
91 1p1t_A Cleavage stimulation fa 99.8 7.5E-21 2.6E-25 126.8 7.5 82 45-126 6-89 (104)
92 2ek1_A RNA-binding protein 12; 99.8 1.1E-20 3.8E-25 124.0 8.0 80 45-124 13-94 (95)
93 1x5o_A RNA binding motif, sing 99.8 1.1E-19 3.6E-24 123.2 13.0 83 42-124 20-111 (114)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.9E-21 2.3E-25 126.5 6.7 82 43-125 15-98 (100)
95 2cq1_A PTB-like protein L; RRM 99.8 1.5E-19 5.3E-24 120.2 13.2 79 43-126 11-92 (101)
96 2hgl_A HNRPF protein, heteroge 99.8 2E-20 6.7E-25 130.9 9.2 81 43-123 40-123 (136)
97 2cpd_A Apobec-1 stimulating pr 99.8 2E-19 6.8E-24 119.0 13.5 77 43-126 11-90 (99)
98 1x4d_A Matrin 3; structural ge 99.8 3.5E-20 1.2E-24 123.4 9.8 77 44-125 12-92 (102)
99 2dgt_A RNA-binding protein 30; 99.8 1.1E-19 3.7E-24 118.7 12.0 76 44-126 7-83 (92)
100 2dnp_A RNA-binding protein 14; 99.8 8.2E-20 2.8E-24 118.8 11.4 75 44-125 6-81 (90)
101 2dnq_A RNA-binding protein 4B; 99.8 1.1E-19 3.6E-24 118.3 11.7 76 44-126 5-81 (90)
102 1x4e_A RNA binding motif, sing 99.8 5.7E-21 2E-25 122.9 5.5 79 45-123 3-83 (85)
103 1l3k_A Heterogeneous nuclear r 99.8 3.2E-20 1.1E-24 136.3 10.0 83 44-126 101-184 (196)
104 3r27_A HnRNP L, heterogeneous 99.8 5.8E-20 2E-24 121.6 9.9 76 44-124 18-96 (100)
105 2cpj_A Non-POU domain-containi 99.8 1.2E-19 4.3E-24 120.0 11.3 79 43-126 11-90 (99)
106 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1E-19 3.5E-24 127.4 11.4 81 42-122 58-140 (140)
107 3beg_B Splicing factor, argini 99.8 3.6E-20 1.2E-24 126.1 8.7 75 45-125 14-94 (115)
108 3md3_A Nuclear and cytoplasmic 99.8 4.7E-20 1.6E-24 131.7 9.6 116 5-123 48-165 (166)
109 1why_A Hypothetical protein ri 99.8 1.6E-19 5.3E-24 119.1 11.4 78 44-126 14-94 (97)
110 2wbr_A GW182, gawky, LD47780P; 99.8 4.9E-20 1.7E-24 118.4 8.6 72 47-123 7-79 (89)
111 1wex_A Hypothetical protein (r 99.8 1.8E-19 6.2E-24 120.5 11.7 78 44-126 12-92 (104)
112 1x4g_A Nucleolysin TIAR; struc 99.8 1.7E-19 5.8E-24 121.4 11.6 79 43-126 21-100 (109)
113 2nlw_A Eukaryotic translation 99.8 4E-20 1.4E-24 123.8 8.3 80 44-124 12-99 (105)
114 1iqt_A AUF1, heterogeneous nuc 99.8 1.1E-20 3.6E-25 118.8 5.2 74 49-122 1-75 (75)
115 2ytc_A PRE-mRNA-splicing facto 99.8 1.1E-19 3.9E-24 116.7 10.1 75 44-123 9-85 (85)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-20 5.7E-25 118.4 5.8 74 48-122 1-76 (77)
117 2hvz_A Splicing factor, argini 99.8 8.6E-20 2.9E-24 121.1 9.5 75 48-126 1-76 (101)
118 1wel_A RNA-binding protein 12; 99.8 7.9E-20 2.7E-24 125.9 9.6 81 44-124 22-103 (124)
119 2lmi_A GRSF-1, G-rich sequence 99.8 2E-20 6.8E-25 125.7 6.4 81 44-124 8-91 (107)
120 2dha_A FLJ20171 protein; RRM d 99.8 4.3E-20 1.5E-24 127.1 8.0 79 45-123 21-103 (123)
121 2i2y_A Fusion protein consists 99.8 5E-20 1.7E-24 130.8 8.7 80 42-125 68-148 (150)
122 2jvr_A Nucleolar protein 3; RN 99.8 6.1E-20 2.1E-24 124.1 8.4 79 45-126 26-106 (111)
123 2ki2_A SS-DNA binding protein 99.8 1.2E-20 4.2E-25 122.6 4.7 77 48-125 2-80 (90)
124 2ad9_A Polypyrimidine tract-bi 99.8 2.1E-19 7.3E-24 122.7 10.9 78 44-126 28-108 (119)
125 2cpx_A Hypothetical protein FL 99.8 2.6E-19 8.8E-24 121.5 11.3 80 44-126 22-106 (115)
126 2e5j_A Methenyltetrahydrofolat 99.8 2.4E-19 8.2E-24 118.2 10.7 80 43-126 15-95 (97)
127 2krb_A Eukaryotic translation 99.8 4.2E-20 1.4E-24 117.9 6.5 72 47-119 1-80 (81)
128 2xnq_A Nuclear polyadenylated 99.8 3.7E-19 1.3E-23 117.5 11.2 76 43-125 18-95 (97)
129 2kvi_A Nuclear polyadenylated 99.8 9.7E-20 3.3E-24 119.9 8.3 76 44-126 7-84 (96)
130 2lcw_A RNA-binding protein FUS 99.7 2E-21 6.7E-26 132.4 0.0 82 44-125 4-95 (116)
131 1wf1_A RNA-binding protein RAL 99.8 4.8E-19 1.6E-23 119.4 11.8 76 44-126 24-101 (110)
132 2a3j_A U1 small nuclear ribonu 99.8 2.2E-19 7.4E-24 124.2 10.2 80 44-125 26-110 (127)
133 2jvo_A Nucleolar protein 3; nu 99.8 2.4E-19 8.2E-24 120.7 10.1 78 42-126 26-104 (108)
134 2hgm_A HNRPF protein, heteroge 99.8 9.2E-20 3.1E-24 125.8 7.9 79 44-123 39-119 (126)
135 2xs2_A Deleted in azoospermia- 99.8 8.7E-20 3E-24 121.3 7.3 79 45-124 7-85 (102)
136 1fj7_A Nucleolin RBD1, protein 99.8 2.4E-20 8.1E-25 123.9 4.5 81 44-125 14-95 (101)
137 4f02_A Polyadenylate-binding p 99.8 5.4E-20 1.8E-24 137.7 6.8 117 5-125 64-181 (213)
138 2cqh_A IGF-II mRNA-binding pro 99.8 4.1E-19 1.4E-23 116.1 10.0 75 45-125 6-83 (93)
139 2e5g_A U6 snRNA-specific termi 99.8 1.2E-18 4E-23 114.2 11.9 76 45-125 6-82 (94)
140 2qfj_A FBP-interacting repress 99.8 3.8E-19 1.3E-23 132.4 10.8 82 45-126 123-206 (216)
141 2la4_A Nuclear and cytoplasmic 99.8 2.5E-19 8.5E-24 118.9 8.8 75 45-124 25-100 (101)
142 1fjc_A Nucleolin RBD2, protein 99.8 1.9E-19 6.5E-24 118.3 7.9 78 44-125 13-91 (96)
143 2f3j_A RNA and export factor b 99.8 5.5E-19 1.9E-23 128.9 11.1 80 45-124 86-166 (177)
144 1nu4_A U1A RNA binding domain; 99.8 1.6E-19 5.5E-24 118.8 7.3 80 44-125 5-89 (97)
145 1x4f_A Matrin 3; structural ge 99.8 7.4E-19 2.5E-23 118.8 10.5 77 44-125 22-102 (112)
146 2g4b_A Splicing factor U2AF 65 99.8 4.1E-19 1.4E-23 127.9 9.7 78 45-122 92-171 (172)
147 4f02_A Polyadenylate-binding p 99.8 1.1E-18 3.9E-23 130.5 12.5 80 45-124 13-94 (213)
148 3nmr_A Cugbp ELAV-like family 99.8 6.6E-19 2.3E-23 126.9 10.5 117 5-122 54-174 (175)
149 1whx_A Hypothetical protein ri 99.8 2.8E-19 9.6E-24 120.9 7.6 75 46-125 9-84 (111)
150 3egn_A RNA-binding protein 40; 99.8 3.3E-19 1.1E-23 125.6 8.1 84 44-127 42-132 (143)
151 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-18 4.5E-23 118.0 10.3 78 45-124 6-84 (115)
152 1b7f_A Protein (SXL-lethal pro 99.8 1.4E-18 4.7E-23 124.5 10.7 113 5-122 52-168 (168)
153 1x5p_A Negative elongation fac 99.8 5.1E-18 1.7E-22 111.8 12.6 77 43-126 11-88 (97)
154 1l3k_A Heterogeneous nuclear r 99.8 2E-18 6.7E-23 126.7 11.7 83 43-125 9-92 (196)
155 2yh0_A Splicing factor U2AF 65 99.8 1.1E-18 3.8E-23 128.2 10.2 82 45-126 112-195 (198)
156 1sjr_A Polypyrimidine tract-bi 99.8 2.9E-18 9.8E-23 122.9 11.7 77 46-125 45-124 (164)
157 2cjk_A Nuclear polyadenylated 99.8 8.2E-20 2.8E-24 130.9 3.4 80 45-124 85-165 (167)
158 1fxl_A Paraneoplastic encephal 99.8 5.4E-18 1.8E-22 121.0 12.8 79 47-125 2-82 (167)
159 1fxl_A Paraneoplastic encephal 99.8 2.4E-18 8.1E-23 122.9 10.4 113 5-122 51-167 (167)
160 3md3_A Nuclear and cytoplasmic 99.8 5.6E-18 1.9E-22 120.8 11.7 78 48-125 1-79 (166)
161 1b7f_A Protein (SXL-lethal pro 99.8 5.6E-18 1.9E-22 121.3 11.1 80 46-125 2-83 (168)
162 2e44_A Insulin-like growth fac 99.8 3.8E-18 1.3E-22 112.0 9.3 78 45-125 13-92 (96)
163 2voo_A Lupus LA protein; RNA-b 99.8 7.9E-18 2.7E-22 124.4 11.9 80 45-124 107-186 (193)
164 1wg1_A KIAA1579 protein, homol 99.8 3.1E-18 1.1E-22 110.9 8.4 74 46-125 4-78 (88)
165 2cq2_A Hypothetical protein LO 99.8 4.8E-18 1.7E-22 114.9 9.3 76 45-125 23-106 (114)
166 1wf0_A TDP-43, TAR DNA-binding 99.8 2.6E-18 8.9E-23 111.2 7.4 76 45-125 3-78 (88)
167 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-17 3.6E-22 115.7 10.8 76 46-125 27-106 (130)
168 3d2w_A TAR DNA-binding protein 99.7 4.4E-18 1.5E-22 110.6 8.3 77 44-125 8-84 (89)
169 2j8a_A Histone-lysine N-methyl 99.7 5.5E-18 1.9E-22 116.0 9.0 77 48-124 3-95 (136)
170 2hzc_A Splicing factor U2AF 65 99.7 5.7E-18 1.9E-22 109.1 8.6 72 45-121 4-86 (87)
171 1fje_B Nucleolin RBD12, protei 99.7 1.6E-18 5.5E-23 125.2 6.6 78 44-125 96-174 (175)
172 2ghp_A U4/U6 snRNA-associated 99.7 7.1E-18 2.4E-22 131.4 9.5 121 5-125 166-291 (292)
173 2e5i_A Heterogeneous nuclear r 99.7 4.5E-17 1.5E-21 111.9 12.2 74 47-125 25-102 (124)
174 3smz_A Protein raver-1, ribonu 99.7 1.4E-17 4.9E-22 129.2 10.6 120 5-126 144-265 (284)
175 3tyt_A Heterogeneous nuclear r 99.7 2E-17 6.8E-22 123.3 10.2 75 46-124 3-79 (205)
176 2dnl_A Cytoplasmic polyadenyla 99.7 3.1E-17 1.1E-21 111.2 9.8 76 45-123 6-86 (114)
177 2qfj_A FBP-interacting repress 99.7 3E-17 1E-21 122.1 10.0 80 45-124 26-107 (216)
178 2diu_A KIAA0430 protein; struc 99.7 3.5E-17 1.2E-21 106.2 8.6 71 47-126 8-85 (96)
179 2bz2_A Negative elongation fac 99.7 4.9E-17 1.7E-21 111.5 8.9 76 43-125 35-111 (121)
180 3smz_A Protein raver-1, ribonu 99.7 9.6E-17 3.3E-21 124.5 11.1 110 5-125 64-175 (284)
181 2cjk_A Nuclear polyadenylated 99.7 3.4E-17 1.2E-21 117.2 7.8 78 46-124 2-80 (167)
182 2pe8_A Splicing factor 45; RRM 99.7 3E-16 1E-20 104.9 11.8 80 45-124 6-93 (105)
183 3pgw_A U1-A; protein-RNA compl 99.7 1E-16 3.4E-21 124.3 10.7 75 45-123 205-281 (282)
184 3pgw_A U1-A; protein-RNA compl 99.7 1.5E-16 5.1E-21 123.3 11.4 80 44-125 6-90 (282)
185 3nmr_A Cugbp ELAV-like family 99.7 1.2E-16 4E-21 115.0 10.1 79 46-124 2-87 (175)
186 2adc_A Polypyrimidine tract-bi 99.7 2.2E-16 7.4E-21 119.2 10.6 76 46-125 150-228 (229)
187 3tyt_A Heterogeneous nuclear r 99.7 1.1E-16 3.8E-21 119.2 8.5 76 46-122 122-204 (205)
188 1qm9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.3E-21 117.6 8.7 76 46-125 119-197 (198)
189 3u1l_A PRE-mRNA-splicing facto 99.7 1E-16 3.5E-21 121.6 8.0 77 44-125 131-229 (240)
190 2adc_A Polypyrimidine tract-bi 99.7 2.9E-16 9.8E-21 118.6 10.4 80 42-125 29-110 (229)
191 3sde_A Paraspeckle component 1 99.7 2.2E-16 7.5E-21 121.5 9.8 109 5-124 65-178 (261)
192 1fje_B Nucleolin RBD12, protei 99.7 4.3E-17 1.5E-21 117.7 3.9 83 43-125 9-91 (175)
193 2ghp_A U4/U6 snRNA-associated 99.6 7.6E-16 2.6E-20 119.8 10.3 81 43-124 37-117 (292)
194 3sde_A Paraspeckle component 1 99.6 8.7E-16 3E-20 118.1 10.4 77 43-124 18-95 (261)
195 1qm9_A Polypyrimidine tract-bi 99.6 3.5E-16 1.2E-20 115.2 7.2 76 46-125 2-79 (198)
196 1jmt_A Splicing factor U2AF 35 99.6 1.8E-16 6E-21 105.9 4.9 71 52-122 20-103 (104)
197 2dit_A HIV TAT specific factor 99.6 7.3E-15 2.5E-19 99.1 12.7 79 44-125 12-102 (112)
198 2g4b_A Splicing factor U2AF 65 99.6 2.2E-15 7.5E-20 108.2 9.4 75 46-125 3-88 (172)
199 2yh0_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 109.2 9.3 75 46-125 3-88 (198)
200 3v4m_A Splicing factor U2AF 65 99.6 6.4E-15 2.2E-19 98.4 8.6 79 45-123 3-95 (105)
201 3ue2_A Poly(U)-binding-splicin 99.5 4.3E-14 1.5E-18 96.3 9.7 78 46-123 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.9E-13 9.8E-18 89.5 12.5 65 57-126 27-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 5.3E-14 1.8E-18 112.0 9.0 75 44-123 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 2E-12 6.8E-17 87.5 9.5 76 45-123 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 5E-12 1.7E-16 86.0 8.3 74 44-122 15-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.1E-11 3.7E-16 79.6 9.3 75 45-126 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.4E-10 4.7E-15 74.9 6.7 73 44-123 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 6.8E-10 2.3E-14 83.0 8.1 65 59-123 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 4.7E-08 1.6E-12 64.4 8.6 72 46-122 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.4 4.9E-06 1.7E-10 54.2 10.1 73 45-124 6-83 (104)
211 1wey_A Calcipressin 1; structu 98.1 8.4E-06 2.9E-10 53.3 5.9 73 47-124 5-83 (104)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00016 5.4E-09 46.3 8.3 67 48-114 2-72 (91)
213 1wwh_A Nucleoporin 35, nucleop 97.7 0.00031 1.1E-08 47.0 8.3 72 45-122 22-94 (119)
214 1whv_A Poly(A)-specific ribonu 97.5 0.00048 1.6E-08 44.4 7.1 52 47-106 16-67 (100)
215 3ctr_A Poly(A)-specific ribonu 97.3 0.00042 1.5E-08 44.7 5.5 53 48-108 7-60 (101)
216 3pq1_A Poly(A) RNA polymerase; 97.2 0.00018 6.2E-09 59.1 3.3 59 44-107 50-108 (464)
217 2l08_A Regulator of nonsense t 96.9 0.00097 3.3E-08 43.0 3.7 68 47-114 9-80 (97)
218 3p3d_A Nucleoporin 53; structu 96.4 0.0047 1.6E-07 42.0 4.8 76 47-123 7-97 (132)
219 2kn4_A Immunoglobulin G-bindin 96.0 0.0063 2.2E-07 42.2 4.1 33 76-109 2-35 (158)
220 4f25_A Polyadenylate-binding p 95.1 0.0043 1.5E-07 41.0 0.3 59 5-63 52-113 (115)
221 2i2y_A Fusion protein consists 95.1 0.0075 2.5E-07 41.6 1.5 39 85-124 10-50 (150)
222 3d45_A Poly(A)-specific ribonu 91.6 0.65 2.2E-05 38.6 7.8 54 47-108 440-494 (507)
223 2hvz_A Splicing factor, argini 84.0 0.34 1.2E-05 30.5 1.0 53 5-57 44-101 (101)
224 4eyt_A Telomerase associated p 78.5 9.9 0.00034 23.8 7.5 55 46-107 11-66 (129)
225 2g0c_A ATP-dependent RNA helic 75.0 10 0.00035 22.3 5.7 59 57-123 11-75 (76)
226 4e8u_A Putative uncharacterize 63.3 22 0.00074 25.0 6.0 58 49-108 14-83 (172)
227 3swz_A Steroid 17-alpha-hydrox 47.6 27 0.00091 27.9 5.0 57 50-114 17-77 (494)
228 3fry_A Probable copper-exporti 46.1 39 0.0013 19.0 6.3 58 47-110 6-63 (73)
229 3fut_A Dimethyladenosine trans 43.7 27 0.00091 26.2 4.1 32 47-79 110-141 (271)
230 3ts2_A Protein LIN-28 homolog 38.6 3.5 0.00012 28.3 -1.4 28 62-96 2-29 (148)
231 3uzu_A Ribosomal RNA small sub 36.8 17 0.00058 27.4 2.1 32 48-79 115-146 (279)
232 3tbg_A Cytochrome P450 2D6; mo 36.7 18 0.00062 28.6 2.4 55 51-113 20-77 (479)
233 2ot8_C HnRNP M, heterogeneous 31.2 17 0.00059 17.5 0.8 9 167-175 16-24 (30)
234 4bby_A Alkyldihydroxyacetoneph 30.9 50 0.0017 28.1 4.3 54 54-107 350-408 (658)
235 1qyr_A KSGA, high level kasuga 30.7 38 0.0013 24.9 3.1 29 48-76 91-119 (252)
236 3ftd_A Dimethyladenosine trans 28.8 39 0.0013 24.8 2.9 32 48-79 96-127 (249)
237 2pk2_A Cyclin-T1, protein TAT; 28.5 12 0.00041 29.4 0.0 12 58-69 228-239 (358)
238 3tqs_A Ribosomal RNA small sub 28.2 19 0.00066 26.7 1.1 30 50-79 99-128 (255)
239 3bgu_A Ferredoxin-like protein 27.9 1.2E+02 0.0041 19.3 5.3 55 50-104 25-89 (116)
240 1i4w_A Mitochondrial replicati 25.1 57 0.002 25.5 3.3 23 48-70 143-165 (353)
241 2cs4_A Protein C12ORF2; GTP bi 22.3 54 0.0019 20.6 2.2 21 50-70 19-39 (95)
242 3mfb_A Uncharacterized protein 22.0 2E+02 0.0068 19.8 5.2 36 59-94 3-42 (157)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.92 E-value=4.5e-24 Score=152.73 Aligned_cols=86 Identities=21% Similarity=0.412 Sum_probs=79.4
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|| .||+..|+|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999998 6899999999999999999999 699999999999999
Q ss_pred eccCCCCC
Q 030488 121 VKRTNVPG 128 (176)
Q Consensus 121 ~a~~~~~~ 128 (176)
++++..+.
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99875543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=139.87 Aligned_cols=80 Identities=25% Similarity=0.484 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
.++++|||+|||+++|+++|+++|++||.|.+|.|++++ +|.++|||||+|.+.++|++|+ .||+..|+|+.|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 7999999999999999999999 79999999999999999
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=1.1e-21 Score=161.24 Aligned_cols=83 Identities=27% Similarity=0.597 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
....++|||+|||++||+++|+++|++||.|+.|.|+.++ ++.++|||||+|.+.++|++|| .||++.|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 7999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+....
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98643
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=135.33 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
.+.++|||+|||+++|+++|+++|++||.|.+|.|+.|+ +++++|||||+|.+.++|++|| .||+..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999998 6999999999999999999999 79999999999999998
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 5
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=5.8e-22 Score=135.20 Aligned_cols=83 Identities=19% Similarity=0.449 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
..+.++|||+|||.++|+++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34578999999999999999999999999999999999989999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
+...
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7643
No 6
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.5e-21 Score=132.94 Aligned_cols=84 Identities=23% Similarity=0.487 Sum_probs=77.0
Q ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 41 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 41 ~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
...+...++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3345678999999999999999999999999999999999987 7999999999999999999999 5887 89999999
Q ss_pred EEeccCC
Q 030488 119 VTVKRTN 125 (176)
Q Consensus 119 v~~a~~~ 125 (176)
|+++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999753
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=2.4e-21 Score=131.59 Aligned_cols=86 Identities=23% Similarity=0.473 Sum_probs=79.7
Q ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 41 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 41 ~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
..+..+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345678999999999999999999999999999999999997 7999999999999999999999 6999999999999
Q ss_pred EEeccCCC
Q 030488 119 VTVKRTNV 126 (176)
Q Consensus 119 v~~a~~~~ 126 (176)
|.+++...
T Consensus 89 V~~a~~~~ 96 (115)
T 2dgo_A 89 TNWATRKP 96 (115)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 99997654
No 8
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.7e-21 Score=131.09 Aligned_cols=84 Identities=29% Similarity=0.406 Sum_probs=78.2
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++++.+++||||+|.+.++|++|| .||+..|+|+.|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 345578999999999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 97543
No 9
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.88 E-value=5.7e-23 Score=155.81 Aligned_cols=78 Identities=24% Similarity=0.418 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC--CeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G--~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
..++|||+|||+++|+++|+++|++|| .|.+|.|++++ +++++|||||+|.+.++|++|| .||++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999998 8999999999999999999999 6999999999999998
Q ss_pred cc
Q 030488 122 KR 123 (176)
Q Consensus 122 a~ 123 (176)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 10
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=1.9e-22 Score=139.22 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=78.3
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999997 7999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++.+..
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 997643
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-21 Score=130.28 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=79.0
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
.+..+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345668999999999999999999999999999999999997 7999999999999999999999 69999999999999
Q ss_pred EeccCCC
Q 030488 120 TVKRTNV 126 (176)
Q Consensus 120 ~~a~~~~ 126 (176)
+++++..
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997643
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=129.75 Aligned_cols=83 Identities=22% Similarity=0.514 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||.+++..|+|+.|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567899999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8643
No 13
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=130.01 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=77.9
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++|| .||+..|.|+.|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4557899999999999999999999999999999999998 8999999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98644
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=8.6e-23 Score=133.56 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=73.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCC-CeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-Hh-CCCeeCCeeeEEEec
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVTVK 122 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G-~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l-~~~~~~g~~i~v~~a 122 (176)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++ ++.++|||||+|.+.++|++|| .+ ++..++|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 7999999999999999999999 55 456799999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=129.03 Aligned_cols=84 Identities=25% Similarity=0.561 Sum_probs=78.8
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|+ .||+..|+|+.|+|++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98643
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=128.60 Aligned_cols=82 Identities=28% Similarity=0.574 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
...++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356899999999999999999999999999999999987 6999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
+...
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=1.8e-21 Score=132.27 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=78.5
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 7999999999999999999999 799999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++++..
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 997643
No 18
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=2.1e-21 Score=136.18 Aligned_cols=83 Identities=25% Similarity=0.444 Sum_probs=77.9
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||.++|+++|+++|+.||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567999999999999999999999999999999999987 6899999999999999999999 699999999999999
Q ss_pred eccCC
Q 030488 121 VKRTN 125 (176)
Q Consensus 121 ~a~~~ 125 (176)
++++.
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99864
No 19
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.3e-22 Score=131.99 Aligned_cols=84 Identities=29% Similarity=0.519 Sum_probs=78.2
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999988 6999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
+++...
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 20
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=2.6e-21 Score=129.33 Aligned_cols=83 Identities=28% Similarity=0.397 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCC---eeeEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG---RQLKV 119 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g---~~i~v 119 (176)
....++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|| .||+..+.+ +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999 699999988 99999
Q ss_pred EeccCCC
Q 030488 120 TVKRTNV 126 (176)
Q Consensus 120 ~~a~~~~ 126 (176)
.+++...
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9998654
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=130.49 Aligned_cols=84 Identities=26% Similarity=0.466 Sum_probs=78.5
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567999999999999999999999999999999999998 7999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++++..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 997643
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=129.15 Aligned_cols=83 Identities=25% Similarity=0.490 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999998 8999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98654
No 23
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=4.3e-21 Score=127.98 Aligned_cols=82 Identities=24% Similarity=0.462 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++|| |..|.|+.++ ++.++|||||+|.+.++|++||.||+..|.|+.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 45578999999999999999999999997 9999999998 799999999999999999999999999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
++..
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7643
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=130.34 Aligned_cols=83 Identities=27% Similarity=0.495 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4567899999999999999999999999999999999986 7899999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98654
No 25
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=1.6e-21 Score=126.45 Aligned_cols=83 Identities=59% Similarity=1.000 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccC
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~ 124 (176)
+.++|||+|||+++|+++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|+.+|+..|.|+.|+|+++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45899999999999999999999999999999999997 79999999999999999999999999999999999999987
Q ss_pred CCCC
Q 030488 125 NVPG 128 (176)
Q Consensus 125 ~~~~ 128 (176)
..|+
T Consensus 85 ~~pg 88 (89)
T 3ucg_A 85 NRPG 88 (89)
T ss_dssp TSCC
T ss_pred CCCC
Confidence 6553
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.2e-21 Score=129.30 Aligned_cols=85 Identities=20% Similarity=0.501 Sum_probs=78.7
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeC-C-CCCceeEEEEEecCHHHHHHHH-Hh-CCCeeCCeee
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-K-FGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQL 117 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~-~-~g~~~g~afv~f~~~~~a~~a~-~l-~~~~~~g~~i 117 (176)
......++|||+|||+++|+++|+++|++||.|..|.|+.+ + ++.++|||||+|.+.++|++|| .| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999999999999999999999999999998 4 7999999999999999999999 68 9999999999
Q ss_pred EEEeccCCC
Q 030488 118 KVTVKRTNV 126 (176)
Q Consensus 118 ~v~~a~~~~ 126 (176)
+|+++++..
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998653
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=129.59 Aligned_cols=83 Identities=22% Similarity=0.523 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999987 7889999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 97643
No 28
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.1e-21 Score=126.58 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=77.0
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
......++|||+|||+++|+++|+++|++||.|..|.|+.++.+ +++||||+|.+.++|++|| .||+..|+|+.|+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566799999999999999999999999999999999988754 8999999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++++..
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 998654
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=125.38 Aligned_cols=80 Identities=24% Similarity=0.438 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
.+.++|||+|||.++++++|+++|++||.|.+|.++.++ ++.++|||||+|.+.++|++|+ .||+..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999999997 7999999999999999999999 69999999999999999
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.5e-21 Score=129.87 Aligned_cols=84 Identities=27% Similarity=0.467 Sum_probs=78.0
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhC------CCeeCC
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLN------ESELHG 114 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~------~~~~~g 114 (176)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .+| +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999997 6899999999999999999999 699 999999
Q ss_pred eeeEEEeccCCC
Q 030488 115 RQLKVTVKRTNV 126 (176)
Q Consensus 115 ~~i~v~~a~~~~ 126 (176)
+.|+|.++.+..
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999997643
No 31
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-21 Score=128.99 Aligned_cols=82 Identities=26% Similarity=0.500 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C-CCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F-GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~-g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
....++|||+|||+++|+++|+++|++|| |..|.|+.++ + +.++|||||+|.+.++|++||.||+..|.|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 45578999999999999999999999999 9999999988 5 8999999999999999999999999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98643
No 32
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=129.38 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhh-CCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCe-eCCeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQS-CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE-LHGRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~-~~g~~i~v~ 120 (176)
....++|||+|||+++|+++|+++|++ ||.|..|.|+.++++.++|||||+|.+.++|++|| .|++.. |+|+.|.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345789999999999999999999999 99999999999999999999999999999999999 699999 999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++.+..
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997543
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=128.30 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEE-EEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV-TIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~-~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
...++|||+|||+++|+++|+++|++||.|..+ .|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 999985 7999999999999999999999 5999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97643
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.87 E-value=2.2e-21 Score=125.39 Aligned_cols=80 Identities=25% Similarity=0.535 Sum_probs=75.1
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+++++..|+|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999997 79999999999999999999998889999999999987
Q ss_pred c
Q 030488 122 K 122 (176)
Q Consensus 122 a 122 (176)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=131.22 Aligned_cols=81 Identities=16% Similarity=0.348 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCC--eeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCC----eeCCe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGT--VNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES----ELHGR 115 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~--i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~----~~~g~ 115 (176)
...-.+|||+|||+++|+++|+++|++||. |.+|+|++|+ +++++|||||+|.+.++|++|| .||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345689999999999999999999999995 5799999998 7999999999999999999999 69886 58999
Q ss_pred eeEEEeccC
Q 030488 116 QLKVTVKRT 124 (176)
Q Consensus 116 ~i~v~~a~~ 124 (176)
.|.|++|++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=3.4e-21 Score=123.35 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccC
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~ 124 (176)
+.+|||+|||+++++++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|++|+ .||+..++|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3589999999999999999999999999999999996 7999999999999999999999 6999999999999999975
Q ss_pred C
Q 030488 125 N 125 (176)
Q Consensus 125 ~ 125 (176)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.6e-21 Score=126.99 Aligned_cols=83 Identities=24% Similarity=0.428 Sum_probs=76.0
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+ +++||||+|.+.++|++|| .||+..|.|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4566899999999999999999999999999999999988644 6899999999999999999 6999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98643
No 38
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=2e-21 Score=130.16 Aligned_cols=85 Identities=20% Similarity=0.419 Sum_probs=78.1
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCee---CCee
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESEL---HGRQ 116 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~---~g~~ 116 (176)
......++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345667999999999999999999999999999999999988 6999999999999999999999 6999988 8999
Q ss_pred eEEEeccCCC
Q 030488 117 LKVTVKRTNV 126 (176)
Q Consensus 117 i~v~~a~~~~ 126 (176)
|.|.+++...
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999997643
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.1e-21 Score=126.62 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=76.6
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999988 6899999999999999999999 699999999999999
Q ss_pred eccC
Q 030488 121 VKRT 124 (176)
Q Consensus 121 ~a~~ 124 (176)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=127.83 Aligned_cols=82 Identities=34% Similarity=0.551 Sum_probs=76.9
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|+ .||+..|+|+.|+|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345578999999999999999999999999999999999988999999999999999999999 6999999999999999
Q ss_pred ccC
Q 030488 122 KRT 124 (176)
Q Consensus 122 a~~ 124 (176)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=1.3e-21 Score=139.97 Aligned_cols=83 Identities=27% Similarity=0.519 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....+|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4557899999999999999999999999999999999997 7999999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98654
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=129.93 Aligned_cols=83 Identities=27% Similarity=0.453 Sum_probs=77.5
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
...+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|.|+.|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 6999999999999999999999 699999999999999
Q ss_pred eccCC
Q 030488 121 VKRTN 125 (176)
Q Consensus 121 ~a~~~ 125 (176)
++++.
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99764
No 43
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.86 E-value=5.1e-22 Score=138.97 Aligned_cols=120 Identities=21% Similarity=0.377 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK- 83 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~- 83 (176)
|.+.+++..+..+|.............. ............++|||+|||+++|+++|+++|++||.|..|.|+.++
T Consensus 8 ~~~~~~~~~~~~a~~~~~g~~~~g~~~~---~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 8 HHHSSGLVPRGSHMASMTGGQQMGRGSM---SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp ---------------------------C---CSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred cccccCCCchhhhhhhccCCCCCCCCCC---CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 5566677667776666544332222111 112223344567899999999999999999999999999999999987
Q ss_pred CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCCCC
Q 030488 84 FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNVP 127 (176)
Q Consensus 84 ~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~~~ 127 (176)
++.++|||||+|.+.++|++|| .||+..|.|+.|+|+++++..+
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 7999999999999999999999 6999999999999999986543
No 44
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=130.37 Aligned_cols=85 Identities=28% Similarity=0.560 Sum_probs=78.4
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCee--------EEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCe
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN--------RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESE 111 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~ 111 (176)
.+....++|||+|||+++|+++|+++|++||.|. .|.|+.++ ++.++|||||+|.+.++|++|| .||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 69999996 7999999999999999999999 699999
Q ss_pred eCCeeeEEEeccCCC
Q 030488 112 LHGRQLKVTVKRTNV 126 (176)
Q Consensus 112 ~~g~~i~v~~a~~~~ 126 (176)
|.|+.|+|++++...
T Consensus 90 ~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGSKLKVSLARKKP 104 (113)
T ss_dssp ETTEECEEECSSCCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999998643
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=2.4e-21 Score=131.92 Aligned_cols=78 Identities=26% Similarity=0.445 Sum_probs=72.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCC
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 125 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~ 125 (176)
..+|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|| .|++..|+|+.|+|.++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 5689999999999999999999999999999999886 347999999999999999999 79999999999999998754
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=1.8e-21 Score=125.17 Aligned_cols=80 Identities=28% Similarity=0.530 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
..+.++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|+ .||+..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999886 7899999999999999999999 7999999999999998
Q ss_pred cc
Q 030488 122 KR 123 (176)
Q Consensus 122 a~ 123 (176)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 47
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=131.16 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEecc
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~ 123 (176)
+...++|||+|||+++|+++|+++|++||.|.+|.|+.++.+.++|||||+|.+.++|++||.+++..|+|+.|.|.++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999999999874
Q ss_pred C
Q 030488 124 T 124 (176)
Q Consensus 124 ~ 124 (176)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-20 Score=125.58 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=77.1
Q ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEE
Q 030488 41 NREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119 (176)
Q Consensus 41 ~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v 119 (176)
.....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||. +++.|+|+.|.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 3345667899999999999999999999999999999999997 79999999999999999999997 467999999999
Q ss_pred EeccCCC
Q 030488 120 TVKRTNV 126 (176)
Q Consensus 120 ~~a~~~~ 126 (176)
.++.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9997643
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=126.09 Aligned_cols=81 Identities=30% Similarity=0.505 Sum_probs=75.9
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|+ .||+..|.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999987 6899999999999999999999 799999999999999
Q ss_pred ecc
Q 030488 121 VKR 123 (176)
Q Consensus 121 ~a~ 123 (176)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=5.3e-22 Score=129.36 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=70.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCC--CeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G--~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
.+|||+|||+++|+++|+++|++|| .|.++.|+.++ +|+++|||||+|.+.++|++|| .||+..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998 8999999999999999999999 799999999999999997
Q ss_pred CCC
Q 030488 124 TNV 126 (176)
Q Consensus 124 ~~~ 126 (176)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 51
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=129.08 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEecc
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~ 123 (176)
....++|||+|||+++|+++|+++|++||.+ .|.|+.+++++++|||||+|.+.++|++||++|+..|+++.|+|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 3556899999999999999999999999954 999999999999999999999999999999889999999999999886
Q ss_pred CC
Q 030488 124 TN 125 (176)
Q Consensus 124 ~~ 125 (176)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=6e-21 Score=126.36 Aligned_cols=81 Identities=26% Similarity=0.450 Sum_probs=75.8
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeE--------EEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCee
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR--------VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESEL 112 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~ 112 (176)
.....++|||+|||+++|+++|+++|++||.|.. +.|+.++ ++.++|||||+|.+.++|++|+ .||+..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999999 9999997 7999999999999999999999 6999999
Q ss_pred CCeeeEEEecc
Q 030488 113 HGRQLKVTVKR 123 (176)
Q Consensus 113 ~g~~i~v~~a~ 123 (176)
.|+.|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=128.28 Aligned_cols=83 Identities=27% Similarity=0.441 Sum_probs=77.1
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..++..|+|+.|.|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45667999999999999999999999999999999999997 79999999999999999999995599999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
+.+.
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8754
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=3.5e-21 Score=129.81 Aligned_cols=84 Identities=25% Similarity=0.424 Sum_probs=78.1
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999987 7999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++++..
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997643
No 55
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=1e-20 Score=126.18 Aligned_cols=77 Identities=22% Similarity=0.453 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
..+.++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++|| .||+..|+|+.|.|+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3457899999999999999999999999999999987 569999999999999999 69999999999999999
Q ss_pred cCCCC
Q 030488 123 RTNVP 127 (176)
Q Consensus 123 ~~~~~ 127 (176)
++...
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 86543
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=5.4e-21 Score=125.92 Aligned_cols=79 Identities=32% Similarity=0.513 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccC
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~ 124 (176)
+++|||+|||.++++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|+ .|++..|+|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999997 7999999999999999999999 7999999999999999976
Q ss_pred C
Q 030488 125 N 125 (176)
Q Consensus 125 ~ 125 (176)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 57
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=9.8e-21 Score=127.39 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCC-----eeeE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG-----RQLK 118 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g-----~~i~ 118 (176)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++|| .||+..|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45789999999999999999999999999999999875 89999999999999999 699999999 9999
Q ss_pred EEeccCCCC
Q 030488 119 VTVKRTNVP 127 (176)
Q Consensus 119 v~~a~~~~~ 127 (176)
|+++++..+
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999987543
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=8e-21 Score=127.39 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++|| .||+..|.|+.|+|+++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999 69999999999999998
Q ss_pred c
Q 030488 123 R 123 (176)
Q Consensus 123 ~ 123 (176)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 59
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=2.6e-21 Score=133.12 Aligned_cols=85 Identities=53% Similarity=0.985 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||.||+..|+|+.|+|+++
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEES
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3457899999999999999999999999999999999986 799999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030488 123 RTNVPG 128 (176)
Q Consensus 123 ~~~~~~ 128 (176)
++..++
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 875543
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=4.1e-21 Score=131.03 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=75.6
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567999999999999999999999999999999999987 7999999999999999999999 699999999999999
Q ss_pred ecc
Q 030488 121 VKR 123 (176)
Q Consensus 121 ~a~ 123 (176)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 61
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=7.8e-21 Score=125.49 Aligned_cols=82 Identities=28% Similarity=0.538 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCC--C--CceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF--G--QPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~--g--~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++. | .++|||||+|.+.++|++|+ .||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999998763 3 88999999999999999999 69999999999999
Q ss_pred EeccCCC
Q 030488 120 TVKRTNV 126 (176)
Q Consensus 120 ~~a~~~~ 126 (176)
++++...
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997643
No 62
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.7e-21 Score=130.40 Aligned_cols=82 Identities=17% Similarity=0.403 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..++..|+|+.|+|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 3456899999999999999999999999999999999997 699999999999999999999955999999999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
.+.
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=126.14 Aligned_cols=81 Identities=22% Similarity=0.420 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCee-EEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCee----e
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN-RVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ----L 117 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~-~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~----i 117 (176)
...++|||+|||+++++++|+++|++||.|. .|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 99999998 7999999999999999999999 59999999999 9
Q ss_pred EEEeccCC
Q 030488 118 KVTVKRTN 125 (176)
Q Consensus 118 ~v~~a~~~ 125 (176)
+|.+++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999754
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=125.40 Aligned_cols=81 Identities=17% Similarity=0.391 Sum_probs=74.0
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++|+++|+++|++||.|..|.|.. ++.+++||||+|.+.++|++|| .||+..|+|+.|+|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 455679999999999999999999999999999999954 4567999999999999999999 7999999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
+++.
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 9764
No 65
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=134.36 Aligned_cols=84 Identities=14% Similarity=0.302 Sum_probs=77.5
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeE--EEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCC----eeC
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR--VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNES----ELH 113 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~--~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~----~~~ 113 (176)
......++|||+|||+++|+++|+++|++||.|.. |+|++++ +++++|||||+|.+. +|++|| .||+. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34566889999999999999999999999999976 9999999 899999999999999 999999 79999 999
Q ss_pred CeeeEEEeccCCC
Q 030488 114 GRQLKVTVKRTNV 126 (176)
Q Consensus 114 g~~i~v~~a~~~~ 126 (176)
|+.|+|+++++..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999997643
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=1.2e-20 Score=123.09 Aligned_cols=82 Identities=27% Similarity=0.492 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++|+ .||+..|+|+.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345789999999999999999999999999999999874 7889999999999999999999 69999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
++..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8643
No 67
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.6e-22 Score=134.13 Aligned_cols=82 Identities=24% Similarity=0.315 Sum_probs=76.6
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCe-eEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTV-NRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
...+.++|||+|||+++|+++|+++|++||.| ..|.|+.+++++++|||||+|.+.++|++||.+|+..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 34567899999999999999999999999999 89999999999999999999999999999996699999999999999
Q ss_pred ccC
Q 030488 122 KRT 124 (176)
Q Consensus 122 a~~ 124 (176)
+..
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=123.63 Aligned_cols=81 Identities=22% Similarity=0.515 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCC-ceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQ-PKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~-~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
..++|||+|||.++|+++|+++|++||.|..+.|+.+. ++. ++|||||+|.+.++|++|+ .||+..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999999887 343 8999999999999999999 69999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=127.28 Aligned_cols=83 Identities=28% Similarity=0.540 Sum_probs=77.5
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .|++..|.|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 7899999999999999999999 699999999999999
Q ss_pred eccCC
Q 030488 121 VKRTN 125 (176)
Q Consensus 121 ~a~~~ 125 (176)
++++.
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99754
No 70
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=125.94 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
....++|||+|||+++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|| .||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999999888777766 7999999999999999999999 7999999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 71
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=121.74 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEecc
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~ 123 (176)
....++|||+|||+++|+++|+++|++| .|..|.|+.+.+++++|||||+|.+.++|++||.+|+..|+|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4567899999999999999999999999 999999999988999999999999999999999999999999999999997
Q ss_pred CC
Q 030488 124 TN 125 (176)
Q Consensus 124 ~~ 125 (176)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=1.1e-20 Score=136.26 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=77.5
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557889999999999999999999999999999999997 8999999999999999999999 699999999999999
Q ss_pred eccCCCC
Q 030488 121 VKRTNVP 127 (176)
Q Consensus 121 ~a~~~~~ 127 (176)
++.+..+
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976543
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=6.1e-21 Score=132.49 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=78.2
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .|++..|+|+.|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 7899999999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++++..
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998654
No 74
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=124.54 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|.. |.|+.+.+++++|||||+|.+.++|++||..++..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 456789999999999999999999999999987 8898888899999999999999999999965999999999999988
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 64
No 75
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-21 Score=130.61 Aligned_cols=82 Identities=32% Similarity=0.504 Sum_probs=76.7
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
.+...++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||.||+..|+|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 34457899999999999999999999999999999999988 68999999999999999999999999999999999999
Q ss_pred ccC
Q 030488 122 KRT 124 (176)
Q Consensus 122 a~~ 124 (176)
++.
T Consensus 101 a~~ 103 (114)
T 2cq4_A 101 SQA 103 (114)
T ss_dssp HHH
T ss_pred cCC
Confidence 864
No 76
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=1.3e-21 Score=130.02 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCC-ee
Q 030488 46 DSRSVFVGNVDY------SCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG-RQ 116 (176)
Q Consensus 46 ~~~~i~v~~lp~------~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g-~~ 116 (176)
..++|||+|||+ ++++++|+++|++||.|.+|.|++++ |++++|||||+|.+.++|++|| .||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999998 6999999999999999999999 799999999 99
Q ss_pred eEEEeccC
Q 030488 117 LKVTVKRT 124 (176)
Q Consensus 117 i~v~~a~~ 124 (176)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999864
No 77
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=134.38 Aligned_cols=79 Identities=27% Similarity=0.404 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC--CeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCG--TVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G--~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
..++|||+|||+++|+++|+++|++|| .|..|.|+.|+ +|+++|||||+|.+.++|++|| .||+..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999997 7999999999999999999999 6999999999999999
Q ss_pred ccC
Q 030488 122 KRT 124 (176)
Q Consensus 122 a~~ 124 (176)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 853
No 78
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=1.4e-20 Score=128.64 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCC---eeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~ 120 (176)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||.+|+..|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 456789999999999999999999999999 89999999989999999999999999999999999999999999999
Q ss_pred eccC
Q 030488 121 VKRT 124 (176)
Q Consensus 121 ~a~~ 124 (176)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8853
No 79
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=123.41 Aligned_cols=80 Identities=29% Similarity=0.557 Sum_probs=73.2
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++|+++|+++|++||.| .++.+.+++++|||||+|.+.++|++|| .||+..|.|+.|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34568999999999999999999999999987 5677778999999999999999999999 6999999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
+++.
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 80
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=3.6e-21 Score=121.02 Aligned_cols=74 Identities=22% Similarity=0.468 Sum_probs=70.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 49 ~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
+|||+|||+++++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|+++++..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999988 799999999999999999999999999999999999875
No 81
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=123.32 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
.+.++|||+|||+++++++|+ ++|++||.|.+|.|+.++.+ ++||||+|.+.++|++|| .||+..|+|+.|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356899999999999999999 99999999999999988755 889999999999999999 69999999999999
Q ss_pred EeccCC
Q 030488 120 TVKRTN 125 (176)
Q Consensus 120 ~~a~~~ 125 (176)
+++++.
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999754
No 82
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=1.6e-20 Score=126.60 Aligned_cols=84 Identities=19% Similarity=0.401 Sum_probs=73.9
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||...+..|+|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 44567899999999999999999999999999999999987 69999999999999999999996556999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+.+..
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97543
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=125.30 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCC-eeEEEEe-eCC-CCCceeEEEEEecCHHHHHHHH-HhC--CCeeCCeeeE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGT-VNRVTIR-TDK-FGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLK 118 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~-i~~~~~~-~~~-~g~~~g~afv~f~~~~~a~~a~-~l~--~~~~~g~~i~ 118 (176)
.+.++|||+|||+++|+++|+++|.+||. |..|.|+ .++ ++.++|||||+|.+.++|++|+ .|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 666 6899999999999999999999 686 5899999999
Q ss_pred EEeccCCC
Q 030488 119 VTVKRTNV 126 (176)
Q Consensus 119 v~~a~~~~ 126 (176)
|+++++..
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99997643
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=125.55 Aligned_cols=84 Identities=27% Similarity=0.446 Sum_probs=75.6
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHH---HHhhhCCCeeEEEEeeCC-C---CCceeEEEEEecCHHHHHHHH-HhCCCeeCC
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQ---QHFQSCGTVNRVTIRTDK-F---GQPKGYAYVEFLQSEAVQEAL-HLNESELHG 114 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~---~~f~~~G~i~~~~~~~~~-~---g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 114 (176)
.....++|||+|||+++++++|+ ++|++||.|..|.|+.++ + +.++|||||+|.+.++|++|| .||+..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999887 3 356799999999999999999 699999999
Q ss_pred eeeEEEeccCCC
Q 030488 115 RQLKVTVKRTNV 126 (176)
Q Consensus 115 ~~i~v~~a~~~~ 126 (176)
+.|+|+++.+..
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999997643
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=5.6e-20 Score=126.52 Aligned_cols=83 Identities=20% Similarity=0.413 Sum_probs=77.7
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|+ .||+..|+|+.|+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345678999999999999999999999999999999999989999999999999999999999 6999999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
+...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 9754
No 86
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=127.06 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccC
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~ 124 (176)
+..+|||+|||+++|+++|+++|+.| .|..|.|+.+++|+++|||||+|.+.++|++||.+|+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 8999999999899999999999999999999999999999999999988753
No 87
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.84 E-value=1.4e-21 Score=137.19 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=74.5
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
.....++|||+|||+++|+++|+++|++|| |..|.|+++++++++|||||+|.+.++|++||.+|+..|+++.|+|..+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 345678999999999999999999999999 6799999998999999999999999999999999999999999999988
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=126.65 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=76.8
Q ss_pred ccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 40 ANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 40 ~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
........++|||+|||.++|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|+ .|++..|+|+.|+
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334456789999999999999999999999999999999998764 48999999999999999999 6999999999999
Q ss_pred EEeccCC
Q 030488 119 VTVKRTN 125 (176)
Q Consensus 119 v~~a~~~ 125 (176)
|+++++.
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999753
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=125.12 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhC--CCeeCCeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~--~~~~~g~~i~v~ 120 (176)
....++|||+|||+++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|+ .++ +..|.|+.|.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999999999999999999999999999876 799999999999999999 576 478999999999
Q ss_pred eccCC
Q 030488 121 VKRTN 125 (176)
Q Consensus 121 ~a~~~ 125 (176)
+++..
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 99764
No 90
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9.3e-20 Score=121.12 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=73.0
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++|+++|+++|+.|+ .|.++.++ ++.++|||||+|.+.++|++|| .||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456689999999999999999999999873 67788886 7999999999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++++..
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998643
No 91
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.5e-21 Score=126.83 Aligned_cols=82 Identities=35% Similarity=0.627 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
...++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999999987 7999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7643
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=1.1e-20 Score=124.00 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
...++|||+|||+++|+++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999888888776 7899999999999999999999 69999999999999987
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=123.25 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=76.6
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCee--------
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL-------- 112 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~-------- 112 (176)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|| .||+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3455679999999999999999999999999999999999999999999999999999999999 6999999
Q ss_pred CCeeeEEEeccC
Q 030488 113 HGRQLKVTVKRT 124 (176)
Q Consensus 113 ~g~~i~v~~a~~ 124 (176)
.++.|.|.++.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 577899999874
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=6.9e-21 Score=126.45 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=73.8
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC--CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK--FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~--~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+++++++|+++|++|| |.+|.|+.++ +++++|||||+|.+.++|++||.|++..|+|+.|+|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 445679999999999999999999999999 9999999987 7999999999999999999999999999999999999
Q ss_pred eccCC
Q 030488 121 VKRTN 125 (176)
Q Consensus 121 ~a~~~ 125 (176)
++++.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99753
No 95
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=120.21 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=71.0
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-Hh--CCCeeCCeeeEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL--NESELHGRQLKV 119 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l--~~~~~~g~~i~v 119 (176)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|+ .| ++..|.|+.|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999998865 899999999999999999 55 578899999999
Q ss_pred EeccCCC
Q 030488 120 TVKRTNV 126 (176)
Q Consensus 120 ~~a~~~~ 126 (176)
.+++...
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9997643
No 96
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=2e-20 Score=130.95 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=76.3
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCC---eeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v 119 (176)
.....++|||+|||+++|+++|+++|++||. |..|.|++++.|+++|||||+|.+.++|++||.+|+..|+|+.|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 3456789999999999999999999999999 8999999998999999999999999999999999999999999999
Q ss_pred Eecc
Q 030488 120 TVKR 123 (176)
Q Consensus 120 ~~a~ 123 (176)
..+.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 97
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-19 Score=118.99 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=70.5
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhC--CCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSC--GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
.....++|||+|||+++|+++|+++|++| |.|..|.+. ++||||+|.+.++|++|| .||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567999999999999999999999999 999999875 679999999999999999 69999999999999
Q ss_pred EeccCCC
Q 030488 120 TVKRTNV 126 (176)
Q Consensus 120 ~~a~~~~ 126 (176)
+++++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998643
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=123.44 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCC--CeeCCeeeEE
Q 030488 44 EVDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE--SELHGRQLKV 119 (176)
Q Consensus 44 ~~~~~~i~v~~lp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~--~~~~g~~i~v 119 (176)
..+.++|||+|||+ ++|+++|+++|++||.|.+|.|+++ ++||||+|.+.++|++|| .|++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 34678999999999 9999999999999999999999876 689999999999999999 6775 5699999999
Q ss_pred EeccCC
Q 030488 120 TVKRTN 125 (176)
Q Consensus 120 ~~a~~~ 125 (176)
.+++..
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999854
No 99
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=118.73 Aligned_cols=76 Identities=29% Similarity=0.564 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|+ .||+..|.|+.|+|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4567899999999999999999999999999999997 459999999999999999 79999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
++..
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7643
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.2e-20 Score=118.82 Aligned_cols=75 Identities=28% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|+ .||+..|+|+.|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4567899999999999999999999999999999997 459999999999999999 69999999999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
++.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 101
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=118.28 Aligned_cols=76 Identities=25% Similarity=0.481 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++|+ .||+..|+|+.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3457899999999999999999999999999999997 679999999999999999 79999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
++..
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.7e-21 Score=122.94 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999987 7999999999999999999999 69999999998887765
Q ss_pred c
Q 030488 123 R 123 (176)
Q Consensus 123 ~ 123 (176)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 103
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=3.2e-20 Score=136.34 Aligned_cols=83 Identities=19% Similarity=0.435 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..++..|+|+.|.|.++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 3456899999999999999999999999999999999998 799999999999999999999976899999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
.+..
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 7643
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=121.59 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCe--eCCeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE--LHGRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~--~~g~~i~v~ 120 (176)
..++++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|++|+ .|++.. |.|+.|.|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 346789999999999999999999999999999999864 789999999999999999 688765 789999999
Q ss_pred eccC
Q 030488 121 VKRT 124 (176)
Q Consensus 121 ~a~~ 124 (176)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 9975
No 105
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=119.97 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=72.7
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
...+.++|||+|||+++|+++|+++|++||.|..|.+..+ ++||||+|.+.++|++|+ .||+..|.|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3456789999999999999999999999999999999865 789999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97643
No 106
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=127.36 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.2
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
......++|||+|||.++|+++|+++|++||.|..+.|+.++ ++.++|||||+|.+.++|++|+ .||+..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345568999999999999999999999999999999999986 7999999999999999999999 79999999999999
Q ss_pred Eec
Q 030488 120 TVK 122 (176)
Q Consensus 120 ~~a 122 (176)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 107
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.82 E-value=3.6e-20 Score=126.08 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCee-----eE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ-----LK 118 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~-----i~ 118 (176)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++|| .||+..|+|+. |+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34689999999999999999999999999999999865 89999999999999999 69999999998 77
Q ss_pred EEeccCC
Q 030488 119 VTVKRTN 125 (176)
Q Consensus 119 v~~a~~~ 125 (176)
|..+...
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7776543
No 108
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.7e-20 Score=131.71 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK- 83 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~- 83 (176)
|...+++..|+..++...-......... .............+|||+|||.++|+++|+++|++||.|..+.++.+.
T Consensus 48 f~~~~~a~~A~~~l~~~~~~g~~i~v~~---~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 124 (166)
T 3md3_A 48 YHQSHDANIALQTLNGKQIENNIVKINW---AFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ 124 (166)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEE---CCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT
T ss_pred eCCHHHHHHHHHHcCCCccCCCeeEEEE---cCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 4456677777777665432111111000 111112234567899999999999999999999999999999999996
Q ss_pred CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 84 FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 84 ~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
++.++|||||+|.+.++|.+|+ .||+..++|+.|+|.+|+
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 7999999999999999999999 699999999999999986
No 109
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=119.08 Aligned_cols=78 Identities=17% Similarity=0.362 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeC--CeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH--GRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~--g~~i~v~ 120 (176)
....++|||+|||+++|+++|+++|++||.|..|.+..+ ++||||+|.+.++|++|+ .||+..|. |+.|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 445689999999999999999999999999999999765 789999999999999999 69999999 9999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
++++..
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998643
No 110
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=4.9e-20 Score=118.39 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=68.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
+..|||+||++.+|+++|+++|.+||+|.++++..+ +|||||+|.+.++|++|+ .||+..+.|+.|+|+.|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-----QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 578999999999999999999999999999999763 999999999999999999 799999999999999884
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=120.50 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCC--CeeCCeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE--SELHGRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~--~~~~g~~i~v~ 120 (176)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+ .|++ ..|.|+.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 355789999999999999999999999999999998865 799999999999999999 5754 56999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
+++...
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997643
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=121.40 Aligned_cols=79 Identities=20% Similarity=0.421 Sum_probs=73.2
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||.++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|+ .|++..|+|+.|+|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999999876 789999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98643
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=123.79 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCC------CHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCe-
Q 030488 44 EVDSRSVFVGNVDYSC------TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR- 115 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~- 115 (176)
....++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|++|| .||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 4457899999999999 789999999999999999988 458899999999999999999999 6999999998
Q ss_pred eeEEEeccC
Q 030488 116 QLKVTVKRT 124 (176)
Q Consensus 116 ~i~v~~a~~ 124 (176)
.|+|.++..
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 999999864
No 114
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=1.1e-20 Score=118.80 Aligned_cols=74 Identities=18% Similarity=0.430 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 49 SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 49 ~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
+|||+|||+++|+++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|+.+++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999887 699999999999999999999977999999999999875
No 115
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=116.72 Aligned_cols=75 Identities=23% Similarity=0.444 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-Hh-CCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l-~~~~~~g~~i~v~~ 121 (176)
....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+ .| ++..++|+.|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 456789999999999999999999999999999999875 799999999999999999 58 99999999999998
Q ss_pred cc
Q 030488 122 KR 123 (176)
Q Consensus 122 a~ 123 (176)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-20 Score=118.42 Aligned_cols=74 Identities=22% Similarity=0.491 Sum_probs=69.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|+ .++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999987 6999999999999999999999 577 9999999999986
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=121.13 Aligned_cols=75 Identities=25% Similarity=0.486 Sum_probs=70.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCCC
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 126 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~~ 126 (176)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+ .|++..++|+.|+|+++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999877 6899999999999999999 699999999999999998654
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=125.87 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEE-EEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|+.||.|..+ .+..+.+++++|||||+|.+.++|++||.+|+..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4567899999999999999999999999999874 444455899999999999999999999999999999999999998
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 119
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=125.73 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCC---eeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGT---VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~ 120 (176)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.|+++|||||+|.+.++|++||.+|+..|+|+.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 456789999999999999999999999998 89999999988999999999999999999999999999999999999
Q ss_pred eccC
Q 030488 121 VKRT 124 (176)
Q Consensus 121 ~a~~ 124 (176)
++..
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8854
No 120
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=127.11 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCe----eEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTV----NRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVT 120 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i----~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~ 120 (176)
.+..+|||+|||+++|+++|+++|++||.| ..|.|+.+.+|+++|||||+|.+.++|++||..|+..|.++.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999975 6899999989999999999999999999999669999999999998
Q ss_pred ecc
Q 030488 121 VKR 123 (176)
Q Consensus 121 ~a~ 123 (176)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 121
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=5e-20 Score=130.77 Aligned_cols=80 Identities=24% Similarity=0.438 Sum_probs=73.7
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
......++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|+.|+ .||+..|+|+.|+|+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34556799999999999999999999999999999999876 4899999999999999999 699999999999999
Q ss_pred eccCC
Q 030488 121 VKRTN 125 (176)
Q Consensus 121 ~a~~~ 125 (176)
++++.
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99764
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=6.1e-20 Score=124.13 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....+|||+|||+++|+++|+++|++|| .|..+.|..+ +++|||||+|.+.++|++|| .||+..|+|+.|+|+++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999 8999988543 46899999999999999999 79999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
+...
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=1.2e-20 Score=122.63 Aligned_cols=77 Identities=35% Similarity=0.672 Sum_probs=71.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCC
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 125 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~ 125 (176)
++|||+|||.++++++|+++|++||.|.+|.++.++ ++.++|||||+|.+.+ |++|+ .||+..++|+.|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999988 6999999999999999 99999 69999999999999999754
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=122.67 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhC--CCeeCCeeeEEE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKVT 120 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~--~~~~~g~~i~v~ 120 (176)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|+ .++ +..|.|+.|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 445789999999999999999999999999999999876 799999999999999999 576 468999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
+++...
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 997643
No 125
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=121.47 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCee----EEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN----RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~----~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
....++|||+|||+++|+++|+++|++||.|. .+.+. ++.++|||||+|.+.++|++|| .||+..|.|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34678999999999999999999999999984 44443 7888999999999999999999 6999999999999
Q ss_pred EEeccCCC
Q 030488 119 VTVKRTNV 126 (176)
Q Consensus 119 v~~a~~~~ 126 (176)
|+++++..
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99998644
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=118.20 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=71.2
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|+ .||+..|+|+.|+|++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345578999999999999999999999999996 666653 56899999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98643
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=117.94 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=66.6
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCe-eeE
Q 030488 47 SRSVFVGNVDYSC------TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR-QLK 118 (176)
Q Consensus 47 ~~~i~v~~lp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~-~i~ 118 (176)
+++|||+|||..+ |+++|+++|++||.|.+|.|+ ..+|+++|||||+|.+.++|++|+ .||+..|+|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 779999999999999999987 458899999999999999999999 6999999999 887
Q ss_pred E
Q 030488 119 V 119 (176)
Q Consensus 119 v 119 (176)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=3.7e-19 Score=117.45 Aligned_cols=76 Identities=18% Similarity=0.456 Sum_probs=70.0
Q ss_pred cCCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 43 EEVDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.....++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+ .||+..++|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445689999999998 99999999999999999999984 789999999999999999 699999999999999
Q ss_pred eccCC
Q 030488 121 VKRTN 125 (176)
Q Consensus 121 ~a~~~ 125 (176)
+++..
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99753
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.7e-20 Score=119.93 Aligned_cols=76 Identities=18% Similarity=0.456 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
..+.++|||+|||+ ++|+++|+++|++||.|..|.|. +|||||+|.+.++|+.|+ .||+..+.|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35578999999999 99999999999999999999995 789999999999999999 6999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97643
No 130
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=2e-21 Score=132.36 Aligned_cols=82 Identities=26% Similarity=0.446 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeE--------EEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeC
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNR--------VTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELH 113 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 113 (176)
..+.++|||+|||+++++++|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++|| .||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 8899886 7899999999999999999999 69999999
Q ss_pred CeeeEEEeccCC
Q 030488 114 GRQLKVTVKRTN 125 (176)
Q Consensus 114 g~~i~v~~a~~~ 125 (176)
|+.|+|+++++.
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999999764
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=4.8e-19 Score=119.36 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
....++|||+|||++ +|+++|+++|++||.|..|.| +++||||+|.+.++|++|+ .|++..|+|+.|+|++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344689999999999 999999999999999999998 3889999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
++...
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97543
No 132
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=124.25 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+. ++++++|||||+|.+.++|+.|+ .||+..|.|+.|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457899999999999999876 699999999988774 46888999999999999999999 7999999999999
Q ss_pred EEeccCC
Q 030488 119 VTVKRTN 125 (176)
Q Consensus 119 v~~a~~~ 125 (176)
|.+++..
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999764
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=2.4e-19 Score=120.67 Aligned_cols=78 Identities=22% Similarity=0.432 Sum_probs=71.3
Q ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 42 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
......++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|+ .||+..|+|+.|.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999998 789999999999999999 699999999999999
Q ss_pred eccCCC
Q 030488 121 VKRTNV 126 (176)
Q Consensus 121 ~a~~~~ 126 (176)
+++...
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998643
No 134
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.80 E-value=9.2e-20 Score=125.83 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCee--EEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVN--RVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~--~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
.....+|||+|||+++|+++|+++|++| .|. .|.|+.++.|+++|||||+|.+.++|++||.+++..|+|+.|.|..
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 3557899999999999999999999999 676 9999999889999999999999999999997788999999999988
Q ss_pred cc
Q 030488 122 KR 123 (176)
Q Consensus 122 a~ 123 (176)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 135
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=8.7e-20 Score=121.32 Aligned_cols=79 Identities=32% Similarity=0.585 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccC
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~ 124 (176)
...++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|+. ++..|+|+.|.|..+..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 44689999999999999999999999999999999999999999999999999999999999 99999999999998864
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-20 Score=123.86 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|.. .++.+. ++.++|||||+|.+.++|++||+||+..|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345789999999999999999999999999877 555554 688999999999999999999999999999999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
++.
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 137
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=5.4e-20 Score=137.69 Aligned_cols=117 Identities=20% Similarity=0.281 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCC
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF 84 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~ 84 (176)
|...+++..|++.++............. .............+|||+|||+++|+++|+++|++||.|..|.|+.+..
T Consensus 64 F~~~~~A~~Ai~~~~~~~~~g~~i~~~~---~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~ 140 (213)
T 4f02_A 64 FQQPADAERALDTMNFDVIKGKPVRIMW---SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 140 (213)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEE---CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred eCCHHHHHHHHHHhhhhhcCCccccccc---ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC
Confidence 4456677777777765433211111000 1111222234567999999999999999999999999999999998763
Q ss_pred CCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCC
Q 030488 85 GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 125 (176)
Q Consensus 85 g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~ 125 (176)
.++|||||+|.+.++|++|| .||+..|+|+.|.|.++++.
T Consensus 141 -~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 141 -GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp -EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred -CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 47999999999999999999 79999999999999998753
No 138
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=116.08 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCC-eeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCC-CeeCCeeeEEEe
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGT-VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE-SELHGRQLKVTV 121 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~-~~~~g~~i~v~~ 121 (176)
...++|||+|||+++|+++|+++|++||. |..+.+. +++||||+|.+.++|++|+ .||+ ..|+|+.|+|++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 45689999999999999999999999999 6666653 3789999999999999999 6999 999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
+++.
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9764
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=114.22 Aligned_cols=76 Identities=28% Similarity=0.380 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEecc
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~ 123 (176)
...++|||+|||+++|+++|+++|++||.|.+| +.++ ++. ||||+|.+.++|++||.|++..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 346799999999999999999999999999987 4454 454 9999999999999999999999999999999876
Q ss_pred CC
Q 030488 124 TN 125 (176)
Q Consensus 124 ~~ 125 (176)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 140
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=3.8e-19 Score=132.45 Aligned_cols=82 Identities=23% Similarity=0.466 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
...++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999997 7999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 141
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.5e-19 Score=118.88 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
...++|||+|||.++++++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|+ .||+..|+|+.|+|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4468999999999999999999999999999999984 3899999999999999999 799999999999999987
Q ss_pred C
Q 030488 124 T 124 (176)
Q Consensus 124 ~ 124 (176)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=118.31 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+ .|++..|+|+.|.|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 4457899999999999999999999999988665 347888999999999999999999 69999999999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
++.
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=5.5e-19 Score=128.88 Aligned_cols=80 Identities=21% Similarity=0.437 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
...++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|| .||+..|+|+.|+|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3468999999999999999999999999999999999989999999999999999999999 699999999999999986
Q ss_pred C
Q 030488 124 T 124 (176)
Q Consensus 124 ~ 124 (176)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 5
No 144
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=1.6e-19 Score=118.84 Aligned_cols=80 Identities=14% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
..+.++|||+|||+++++++|+ ++|++||.|..|.+. +++.++|||||+|.+.++|+.|+ .||+..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999 999999999999886 35677899999999999999999 6999999999999
Q ss_pred EEeccCC
Q 030488 119 VTVKRTN 125 (176)
Q Consensus 119 v~~a~~~ 125 (176)
|+++++.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999864
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-19 Score=118.76 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhC--CCeeCCeeeEE
Q 030488 44 EVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN--ESELHGRQLKV 119 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~--~~~~~g~~i~v 119 (176)
..+.++|||+|||++ +|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|+ .|+ +..|.|+.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456889999999998 999999999999999999999754 799999999999999999 575 56799999999
Q ss_pred EeccCC
Q 030488 120 TVKRTN 125 (176)
Q Consensus 120 ~~a~~~ 125 (176)
.+++..
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999754
No 146
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=4.1e-19 Score=127.86 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....+|||+|||.++|+++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|+ .||+..++|+.|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 447899999999999999999999999999999999997 8999999999999999999999 69999999999999987
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=1.1e-18 Score=130.46 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
.+.++|||+|||+++|+++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++|| .+++..+.|+.|+|..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999998 7999999999999999999999 79999999999999988
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 148
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.79 E-value=6.6e-19 Score=126.86 Aligned_cols=117 Identities=17% Similarity=0.287 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCC
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF 84 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~ 84 (176)
|.+.+++.+|++.++........... ................++|||+|||+++|+++|+++|++||.|..+.++.+.+
T Consensus 54 f~~~~~A~~A~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~ 132 (175)
T 3nmr_A 54 FYTRKAALEAQNALHNMKVLPGMHHP-IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD 132 (175)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSC-CEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred ECCHHHHHHHHHHhcCcEEccCCccc-eEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC
Confidence 44556777777776653221100000 00001112222334678999999999999999999999999999999999989
Q ss_pred CCceeEEEEEecCHHHHHHHH-HhCCCeeC---CeeeEEEec
Q 030488 85 GQPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQLKVTVK 122 (176)
Q Consensus 85 g~~~g~afv~f~~~~~a~~a~-~l~~~~~~---g~~i~v~~a 122 (176)
+.++|||||+|.+.++|++|+ .||+..+. ++.|.|.+|
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 133 GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 999999999999999999999 79998775 499999987
No 149
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=120.90 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccC
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~ 124 (176)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|| .||+..|.|+.|.|++++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4679999999999999999999999999999998753 789999999999999999 7999999999999999975
Q ss_pred C
Q 030488 125 N 125 (176)
Q Consensus 125 ~ 125 (176)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=125.57 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEE------EEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCee
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV------TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 116 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~------~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 116 (176)
....++|||+|||+++|+++|+++|++||.|..+ .+....++.++|||||+|.+.++|++|| .||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3457899999999999999999999999998764 2222247889999999999999999999 69999999999
Q ss_pred eEEEeccCCCC
Q 030488 117 LKVTVKRTNVP 127 (176)
Q Consensus 117 i~v~~a~~~~~ 127 (176)
|.|.++++..+
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 151
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.3e-18 Score=118.01 Aligned_cols=78 Identities=23% Similarity=0.384 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|+ .||+..++|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35689999999999999999999999999999999865 455899999999999999999 699999999999999987
Q ss_pred C
Q 030488 124 T 124 (176)
Q Consensus 124 ~ 124 (176)
+
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=1.4e-18 Score=124.51 Aligned_cols=113 Identities=22% Similarity=0.371 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK- 83 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~- 83 (176)
|...+++..|++.++...-........ ............+|||+|||.++++++|+++|++||.|..+.++.++
T Consensus 52 f~~~~~A~~a~~~l~~~~~~g~~l~v~-----~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 52 FTSEMDSQRAIKVLNGITVRNKRLKVS-----YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEE-----ECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred ECCHHHHHHHHHhcCCCEeCCcEEEEE-----ecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 445566777777666542211111100 01112233557899999999999999999999999999999999998
Q ss_pred CCCceeEEEEEecCHHHHHHHH-HhCCCeeCC--eeeEEEec
Q 030488 84 FGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKVTVK 122 (176)
Q Consensus 84 ~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g--~~i~v~~a 122 (176)
++.++|||||+|.+.++|.+|+ .||+..+.| +.|+|.+|
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 8999999999999999999999 699999988 99999875
No 153
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-18 Score=111.79 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=69.3
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|++|| .||+..|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456789999996 89999999999999999999985 34899999999999999999 7999999999999999
Q ss_pred ccCCC
Q 030488 122 KRTNV 126 (176)
Q Consensus 122 a~~~~ 126 (176)
+++..
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97643
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=2e-18 Score=126.73 Aligned_cols=83 Identities=22% Similarity=0.481 Sum_probs=76.6
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~ 121 (176)
+....++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++||.+++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34567899999999999999999999999999999999997 79999999999999999999997799999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
+...
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8653
No 155
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.78 E-value=1.1e-18 Score=128.23 Aligned_cols=82 Identities=22% Similarity=0.426 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
...++|||+|||+++++++|+++|++||.|..|.+..++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 567999999999999999999999999999999999997 8999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 030488 123 RTNV 126 (176)
Q Consensus 123 ~~~~ 126 (176)
++..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=2.9e-18 Score=122.85 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCC--eeeEEEec
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHG--RQLKVTVK 122 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g--~~i~v~~a 122 (176)
...+|||+||++.+|+++|+++|++||.|++|.|..+. +++||||+|.+.++|++|+ .||+..|.| +.|+|+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34679999999999999999999999999999987543 4789999999999999999 799999965 99999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
+..
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 864
No 157
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=8.2e-20 Score=130.93 Aligned_cols=80 Identities=21% Similarity=0.459 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEecc
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~ 123 (176)
....+|||+|||.++|+++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|+.+++..++|+.|.|.++.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 346799999999999999999999999999999999987 7999999999999999999999999999999999999997
Q ss_pred C
Q 030488 124 T 124 (176)
Q Consensus 124 ~ 124 (176)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=5.4e-18 Score=121.05 Aligned_cols=79 Identities=27% Similarity=0.489 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccC
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~ 124 (176)
.++|||+|||+++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|++|+ .|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999998 8999999999999999999999 6999999999999999875
Q ss_pred C
Q 030488 125 N 125 (176)
Q Consensus 125 ~ 125 (176)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=2.4e-18 Score=122.94 Aligned_cols=113 Identities=17% Similarity=0.289 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK- 83 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~- 83 (176)
|.+.+++..|++.++...-........ ............+|||+|||.++++++|+++|++||.|..+.++.+.
T Consensus 51 f~~~~~A~~a~~~l~~~~~~g~~l~v~-----~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 51 YIDPKDAEKAINTLNGLRLQTKTIKVS-----YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEE-----ECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred ECCHHHHHHHHHHcCCCccCCceEEEE-----ecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 445667777777766532211111100 01111233457899999999999999999999999999999999988
Q ss_pred CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCee--eEEEec
Q 030488 84 FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ--LKVTVK 122 (176)
Q Consensus 84 ~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~--i~v~~a 122 (176)
++.++|||||+|.+.++|++|+ .||+..+.|+. |.|.+|
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 7999999999999999999999 69999999965 777765
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.6e-18 Score=120.84 Aligned_cols=78 Identities=31% Similarity=0.468 Sum_probs=73.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCC
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 125 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~ 125 (176)
++|||+|||.++|+++|+++|++||.|.+|.++.+++++++|||||+|.+.++|++|+ .+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999998899999999999999999999 79999999999999998654
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=5.6e-18 Score=121.29 Aligned_cols=80 Identities=28% Similarity=0.428 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
+.++|||+|||+++|+++|+++|++||.|.+|.++.++ ++.++|||||+|.+.++|++|+ .+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999987 7999999999999999999999 699999999999999987
Q ss_pred CC
Q 030488 124 TN 125 (176)
Q Consensus 124 ~~ 125 (176)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=112.04 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEE-EEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
...++|||+|||+++|+++|+++|++||.|..| .|+.++. .+.|||+|.+.++|++|+ .||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999 4777653 233999999999999999 69999999999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 163
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.76 E-value=7.9e-18 Score=124.35 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccC
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~ 124 (176)
...++|||+|||+++|+++|+++|++||.|..|.|+++.++.++|||||+|.+.++|++|+.+.+..++|+.|.|.+++.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 34689999999999999999999999999999999999899999999999999999999997666799999999998864
No 164
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=3.1e-18 Score=110.90 Aligned_cols=74 Identities=22% Similarity=0.377 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccC
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~ 124 (176)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|++|+ .||+..++|+.|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46889999999999999999999999 99999885 45899999999999999999 6999999999999999865
Q ss_pred C
Q 030488 125 N 125 (176)
Q Consensus 125 ~ 125 (176)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=114.93 Aligned_cols=76 Identities=18% Similarity=0.380 Sum_probs=68.5
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCee-----CCee
Q 030488 45 VDSRSVFV--GNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL-----HGRQ 116 (176)
Q Consensus 45 ~~~~~i~v--~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~-----~g~~ 116 (176)
.+.++||| +||++++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+ .||+.+| .++.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 34688999 779999999999999999999999988653 789999999999999999 7999998 6899
Q ss_pred eEEEeccCC
Q 030488 117 LKVTVKRTN 125 (176)
Q Consensus 117 i~v~~a~~~ 125 (176)
|.|.+++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998743
No 166
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=111.18 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=66.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccC
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~ 124 (176)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.++.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 35689999999999999999999999999999999865 589999999999999876432 4566999999999875
Q ss_pred C
Q 030488 125 N 125 (176)
Q Consensus 125 ~ 125 (176)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=1.1e-17 Score=115.73 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeE-EEEEecCHHHHHHHH-HhCCCeeCC--eeeEEEe
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGY-AYVEFLQSEAVQEAL-HLNESELHG--RQLKVTV 121 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~-afv~f~~~~~a~~a~-~l~~~~~~g--~~i~v~~ 121 (176)
.-..|||+||++.+|+++|+++|++||.|.+|.|..+. ++| |||+|.+.++|++|+ .||+..|.| +.|+|++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 34678899999999999999999999999999887643 677 999999999999999 799999988 8999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9864
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=4.4e-18 Score=110.58 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEecc
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKR 123 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~ 123 (176)
.....+|||+|||+++|+++|+++|++||.|.+|.|+++ ++|||||+|.+.++|+++.. ....+.|+.|.|..+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999875 59999999999999884322 1334579999999987
Q ss_pred CC
Q 030488 124 TN 125 (176)
Q Consensus 124 ~~ 125 (176)
+.
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.5e-18 Score=115.99 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=68.5
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecC----HHH----HHHHHH---hCCCe
Q 030488 48 RSVFVGNV----DYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQ----SEA----VQEALH---LNESE 111 (176)
Q Consensus 48 ~~i~v~~l----p~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~----~~~----a~~a~~---l~~~~ 111 (176)
..|||+|| |+.+++++|+++|++||+|.+|.++.|+ ||.++|||||+|.+ +++ |.+|+. +++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999 89999999999996 333 677763 69999
Q ss_pred eCCeeeEEEeccC
Q 030488 112 LHGRQLKVTVKRT 124 (176)
Q Consensus 112 ~~g~~i~v~~a~~ 124 (176)
|+|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998753
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=5.7e-18 Score=109.10 Aligned_cols=72 Identities=28% Similarity=0.535 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhC----C-------CeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeC
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELH 113 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~ 113 (176)
...++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+.||+..|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 346899999999999999999999999 8 8999999865 89999999999999999999999999
Q ss_pred CeeeEEEe
Q 030488 114 GRQLKVTV 121 (176)
Q Consensus 114 g~~i~v~~ 121 (176)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 171
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=1.6e-18 Score=125.24 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
....++|||+|||.++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+ .||+..|+|+.|.|+++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 4457899999999999999999999999988665 557889999999999999999999 69999999999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
++.
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 753
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.74 E-value=7.1e-18 Score=131.36 Aligned_cols=121 Identities=13% Similarity=0.264 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCC-CCCCCcc-cccCCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeeEEEEee
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPA-AGGSSLA-NREEVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRT 81 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~v~~lp~~-~t~~~l~~~f~~~G~i~~~~~~~ 81 (176)
|...+++..|++.++...-.......... +...... .......++|||+|||++ +|+++|+++|++||.|..|.|+.
T Consensus 166 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 166 VTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA 245 (292)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence 44566777777777654321111110000 0001111 123456799999999999 99999999999999999999999
Q ss_pred CCC--CCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccCC
Q 030488 82 DKF--GQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTN 125 (176)
Q Consensus 82 ~~~--g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~~ 125 (176)
+.. +.++|||||+|.+.++|.+|+.||+..|+|+.|.|.++.+.
T Consensus 246 ~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 246 GQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred cCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 876 99999999999999999999999999999999999999753
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=4.5e-17 Score=111.92 Aligned_cols=74 Identities=26% Similarity=0.291 Sum_probs=66.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeE-EEEEecCHHHHHHHH-HhCCCeeCC--eeeEEEec
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGY-AYVEFLQSEAVQEAL-HLNESELHG--RQLKVTVK 122 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~-afv~f~~~~~a~~a~-~l~~~~~~g--~~i~v~~a 122 (176)
...|||+||++.+|+++|+++|++||.|.+|.|... .|| |||+|.+.++|+.|+ .||+..|.| +.|+|.+|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 345789999999999999999999999999999753 376 999999999999999 799999987 68999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
++.
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 864
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=1.4e-17 Score=129.17 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCC-CHHHHHHHhhhCCCeeEEEEeeCC
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSC-TPEEVQQHFQSCGTVNRVTIRTDK 83 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~-t~~~l~~~f~~~G~i~~~~~~~~~ 83 (176)
|...+++.+|+..++...-.......... ............++|||+|||.++ |+++|+++|+.||.|..+.|+.+.
T Consensus 144 f~~~~~a~~A~~~l~~~~~~g~~i~v~~a--~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 144 YMKKDSAARAKSDLLGKPLGPRTLYVHWT--DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEC--CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEEC--CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 44556677777777654221111110000 111112234567899999999995 999999999999999999999999
Q ss_pred CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCCC
Q 030488 84 FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTNV 126 (176)
Q Consensus 84 ~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~~ 126 (176)
+|.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.++.+..
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999999999999999999999 699999999999999997643
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=2e-17 Score=123.26 Aligned_cols=75 Identities=31% Similarity=0.426 Sum_probs=70.3
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 46 DSRSVFVGNVD-YSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 46 ~~~~i~v~~lp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
++++|||+||| +.+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|+.|| .||+..|.|+.|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 899999999999999999999998764 799999999999999999 699999999999999986
Q ss_pred C
Q 030488 124 T 124 (176)
Q Consensus 124 ~ 124 (176)
.
T Consensus 79 ~ 79 (205)
T 3tyt_A 79 Q 79 (205)
T ss_dssp C
T ss_pred C
Confidence 4
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=111.20 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C---CCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F---GQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~---g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
...++|||+|||+++|+++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|++|| .|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 8887776 4 799999999999999999999 673 478887777
Q ss_pred Eecc
Q 030488 120 TVKR 123 (176)
Q Consensus 120 ~~a~ 123 (176)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6554
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3e-17 Score=122.11 Aligned_cols=80 Identities=30% Similarity=0.480 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a 122 (176)
...++|||+|||.++|+++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|+ .|++..|.|+.|.|..+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 446899999999999999999999999999999999988 7999999999999999999999 59999999999999876
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
..
T Consensus 106 ~~ 107 (216)
T 2qfj_A 106 SN 107 (216)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 178
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=106.16 Aligned_cols=71 Identities=17% Similarity=0.374 Sum_probs=63.3
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHHhhhC-CCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 47 SRS-VFVGNVDYSCTPEE----VQQHFQSC-GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 47 ~~~-i~v~~lp~~~t~~~----l~~~f~~~-G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
..+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|+ .|++..+.|+.|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 445 99999999999988 55899999 499888 33 99999999999999999 79999999999999
Q ss_pred EeccCCC
Q 030488 120 TVKRTNV 126 (176)
Q Consensus 120 ~~a~~~~ 126 (176)
.+|+...
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998654
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=4.9e-17 Score=111.50 Aligned_cols=76 Identities=22% Similarity=0.443 Sum_probs=69.0
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|++|| .||+..|+|+.|+|.+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456789999996 69999999999999999999986 34899999999999999999 7999999999999999
Q ss_pred ccCC
Q 030488 122 KRTN 125 (176)
Q Consensus 122 a~~~ 125 (176)
+++.
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 9764
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=9.6e-17 Score=124.49 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK- 83 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~- 83 (176)
|...+++..|+..++...-....... .......+|||+|||+++|+++|+++|++||.|..+.++.++
T Consensus 64 f~~~~~A~~A~~~l~~~~~~g~~i~v-----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 64 LLNGEQAEAAINAFHQSRLRERELSV-----------QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEE-----------EECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred eCCHHHHHHHHHHcCCCeeCCeEEEE-----------EecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 44556677777766654321111100 012345799999999999999999999999999999999987
Q ss_pred CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEeccCC
Q 030488 84 FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKRTN 125 (176)
Q Consensus 84 ~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~~~ 125 (176)
++.++|||||+|.+.++|.+|+ .|++..++|+.|.|.++...
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 7999999999999999999999 79999999999999998653
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.4e-17 Score=117.18 Aligned_cols=78 Identities=22% Similarity=0.510 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccC
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRT 124 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~ 124 (176)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|+. +...++|+.|.|..+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 35799999999999999999999999999999999997 79999999999999999999996 35789999999988753
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=3e-16 Score=104.93 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhhCCCeeEEEEeeCC--CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCee
Q 030488 45 VDSRSVFVGNVDY-----SCTPEEVQQHFQSCGTVNRVTIRTDK--FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQ 116 (176)
Q Consensus 45 ~~~~~i~v~~lp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~--~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 116 (176)
..+++|+|.||.. +.++++|++.|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|+ .||+..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999962 23789999999999999999999986 3688999999999999999999 79999999999
Q ss_pred eEEEeccC
Q 030488 117 LKVTVKRT 124 (176)
Q Consensus 117 i~v~~a~~ 124 (176)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1e-16 Score=124.25 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeC-CeeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~-g~~i~v~~a 122 (176)
...++|||+|||.++|+++|+++|++||.|.+|.|+.++ +|||||+|.+.++|++|+ .||+..|. |+.|+|+++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 356889999999999999999999999999999998765 589999999999999999 69999999 999999998
Q ss_pred c
Q 030488 123 R 123 (176)
Q Consensus 123 ~ 123 (176)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.5e-16 Score=123.27 Aligned_cols=80 Identities=14% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
....++|||+|||+++|+++|+ ++|++||.|.+|.|+. +++++|||||+|.+.++|++|| .||+..|.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 4567999999999999999976 8999999999998875 7888999999999999999999 7999999999999
Q ss_pred EEeccCC
Q 030488 119 VTVKRTN 125 (176)
Q Consensus 119 v~~a~~~ 125 (176)
|.+++..
T Consensus 84 v~~a~~~ 90 (282)
T 3pgw_A 84 IQYAKTD 90 (282)
T ss_pred EEEeccC
Confidence 9998653
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=1.2e-16 Score=114.98 Aligned_cols=79 Identities=23% Similarity=0.436 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCC-C--CceeEEEEEecCHHHHHHHH-HhCCCeeC---CeeeE
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-G--QPKGYAYVEFLQSEAVQEAL-HLNESELH---GRQLK 118 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~-g--~~~g~afv~f~~~~~a~~a~-~l~~~~~~---g~~i~ 118 (176)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++. + .++|||||+|.+.++|++|+ .|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 468999999999999999999999999999999999884 4 89999999999999999999 69998775 57788
Q ss_pred EEeccC
Q 030488 119 VTVKRT 124 (176)
Q Consensus 119 v~~a~~ 124 (176)
|..+..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 887754
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=2.2e-16 Score=119.23 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeC-CeeeEEEec
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTVK 122 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~-g~~i~v~~a 122 (176)
..++|||+|||.++++++|+++|++|| .|..|.++.+ .+|||||+|.+.++|++|+ .||+..+. |+.|+|.++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 468999999999999999999999999 9999999653 2789999999999999999 69999999 999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
++.
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 763
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.1e-16 Score=119.18 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCe--eEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCe----eeE
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTV--NRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGR----QLK 118 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i--~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~----~i~ 118 (176)
+.++|||+|||+++|+++|+++|++||.| .++++..++ +..+|||||+|.+.++|.+|| .||+..|.|. ++.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 46789999999999999999999999999 899998776 555799999999999999999 7999999886 466
Q ss_pred EEec
Q 030488 119 VTVK 122 (176)
Q Consensus 119 v~~a 122 (176)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6654
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=117.56 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeC-CeeeEEEec
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCG-TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH-GRQLKVTVK 122 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~-g~~i~v~~a 122 (176)
+.++|||+|||.++++++|+++|++|| .|..|.+..+. +|+|||+|.+.++|.+|+ .||+..++ |+.|+|.++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 478999999999999999999999999 99999997543 789999999999999999 69999999 999999999
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
++.
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.67 E-value=1e-16 Score=121.64 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCee-
Q 030488 44 EVDSRSVFVGNVDYSC---------TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESEL- 112 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~- 112 (176)
....++|||+||+..+ ++++|+++|++||.|++|.|+.+ +|||||+|.+.++|+.|+ +|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4567999999999998 79999999999999999999864 899999999999999999 7999999
Q ss_pred -----------CCeeeEEEeccCC
Q 030488 113 -----------HGRQLKVTVKRTN 125 (176)
Q Consensus 113 -----------~g~~i~v~~a~~~ 125 (176)
.|+.|.|.+|+..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999999754
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.9e-16 Score=118.58 Aligned_cols=80 Identities=29% Similarity=0.460 Sum_probs=73.6
Q ss_pred ccCCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 42 REEVDSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 42 ~~~~~~~~i~v~~lp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
....+.++|||+|||+ ++++++|+++|++||.|.+|.|+.++ +|||||+|.+.++|++|+ .|++..|.|+.|.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456689999999999 99999999999999999999999876 789999999999999999 69999999999999
Q ss_pred EeccCC
Q 030488 120 TVKRTN 125 (176)
Q Consensus 120 ~~a~~~ 125 (176)
.+++..
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998754
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=2.2e-16 Score=121.47 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCC
Q 030488 5 LKEMEEEATALRQMHAKVGNEMASKQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF 84 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~ 84 (176)
|...+++..|+..++........... ....+..+|||+|||..+|+++|+++|++||.|..|.|+.+.+
T Consensus 65 f~~~~~A~~A~~~l~g~~i~g~~l~v-----------~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 133 (261)
T 3sde_A 65 LESRTLAEIAKAELDGTILKSRPLRI-----------RFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR 133 (261)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEE-----------EECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred ECCHHHHHHHHHHcCCcEECCceeEe-----------eecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC
Confidence 44556667777766654321111110 0112467999999999999999999999999999999999989
Q ss_pred CCceeEEEEEecCHHHHHHHH-HhC-CCeeC---CeeeEEEeccC
Q 030488 85 GQPKGYAYVEFLQSEAVQEAL-HLN-ESELH---GRQLKVTVKRT 124 (176)
Q Consensus 85 g~~~g~afv~f~~~~~a~~a~-~l~-~~~~~---g~~i~v~~a~~ 124 (176)
|.++|||||+|.+.++|.+|+ .|| +..+. ++.|.|.++..
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 999999999999999999999 684 44544 89999999864
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=4.3e-17 Score=117.70 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=72.1
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
.....++|||+|||+++|+++|+++|..||.+..+.+....++.++|||||+|.+.++|++|++|++..|.|+.|.|.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 34567999999999999999999999999987663333334688899999999999999999999999999999999998
Q ss_pred cCC
Q 030488 123 RTN 125 (176)
Q Consensus 123 ~~~ 125 (176)
...
T Consensus 89 ~~~ 91 (175)
T 1fje_B 89 KGR 91 (175)
T ss_dssp CCS
T ss_pred CCc
Confidence 753
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=7.6e-16 Score=119.84 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=71.4
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEec
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVK 122 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a 122 (176)
.....++|||+|||+++|+++|+++|+.||.|..|.|+.+..+ ++|||||+|.+.++|++|+++++..+.|+.|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 4566899999999999999999999999999999999998755 479999999999999999999999999999999987
Q ss_pred cC
Q 030488 123 RT 124 (176)
Q Consensus 123 ~~ 124 (176)
..
T Consensus 116 ~~ 117 (292)
T 2ghp_A 116 TE 117 (292)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=8.7e-16 Score=118.11 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=70.9
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEe
Q 030488 43 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTV 121 (176)
Q Consensus 43 ~~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~ 121 (176)
.....++|||+|||+++|+++|+++|++||.|..|.|.++ +|||||+|.+.++|+.|+ .+++..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 3456789999999999999999999999999999999755 799999999999999999 6999999999999998
Q ss_pred ccC
Q 030488 122 KRT 124 (176)
Q Consensus 122 a~~ 124 (176)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=115.16 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 46 DSRSVFVGNVDY-SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 46 ~~~~i~v~~lp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
.+++|||+|||+ ++++++|+++|++||.|.+|.++.++ +|||||+|.+.++|++|+ .|++..+.|+.|.|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 468999999999 99999999999999999999998875 789999999999999999 699999999999999987
Q ss_pred CC
Q 030488 124 TN 125 (176)
Q Consensus 124 ~~ 125 (176)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=1.8e-16 Score=105.90 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=64.3
Q ss_pred EcCCCCCCCHHHHHHHh------------hhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeE
Q 030488 52 VGNVDYSCTPEEVQQHF------------QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLK 118 (176)
Q Consensus 52 v~~lp~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~ 118 (176)
+.+||+.+++++|++.| ++||.|.+|.|+++.+++++|||||+|.+.++|++|+ .||+..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888877766 9999999999998888899999999999999999999 7999999999999
Q ss_pred EEec
Q 030488 119 VTVK 122 (176)
Q Consensus 119 v~~a 122 (176)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9876
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-15 Score=99.14 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCe
Q 030488 44 EVDSRSVFVGNVDYSCT-----------PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESE 111 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~ 111 (176)
...+++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|+ .||+..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 45678999999944332 5799999999999999966 444 36999999999999999999 799999
Q ss_pred eCCeeeEEEeccCC
Q 030488 112 LHGRQLKVTVKRTN 125 (176)
Q Consensus 112 ~~g~~i~v~~a~~~ 125 (176)
|+|+.|.|.++.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998754
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=2.2e-15 Score=108.16 Aligned_cols=75 Identities=27% Similarity=0.523 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhC----C-------CeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCC
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 114 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g 114 (176)
+.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+.+++..+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAMAFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHHHhCCcEecC
Confidence 35899999999999999999999999 6 7777777544 899999999999999999999999999
Q ss_pred eeeEEEeccCC
Q 030488 115 RQLKVTVKRTN 125 (176)
Q Consensus 115 ~~i~v~~a~~~ 125 (176)
+.|.|..+...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987643
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=3.8e-15 Score=109.24 Aligned_cols=75 Identities=27% Similarity=0.495 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhC----C-------CeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCC
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSC----G-------TVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 114 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g 114 (176)
..++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|++||.||+..|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 46899999999999999999999999 5 56666654 34899999999999999999999999999
Q ss_pred eeeEEEeccCC
Q 030488 115 RQLKVTVKRTN 125 (176)
Q Consensus 115 ~~i~v~~a~~~ 125 (176)
+.|.|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 QSLKIRRPHDY 88 (198)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEeCCCCC
Confidence 99999988654
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=6.4e-15 Score=98.44 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHHhhhCCCeeEEEEeeCCC---CCceeEEEEEecCHHHHHHHH-HhCCC
Q 030488 45 VDSRSVFVGNV--DYSCT--------PEEVQQHFQSCGTVNRVTIRTDKF---GQPKGYAYVEFLQSEAVQEAL-HLNES 110 (176)
Q Consensus 45 ~~~~~i~v~~l--p~~~t--------~~~l~~~f~~~G~i~~~~~~~~~~---g~~~g~afv~f~~~~~a~~a~-~l~~~ 110 (176)
.+++.|.|.|+ |.++. +++|++.|++||.|.+|.|++++. +.++|||||+|.+.++|++|+ .||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35688999998 44443 368999999999999999998873 368999999999999999999 79999
Q ss_pred eeCCeeeEEEecc
Q 030488 111 ELHGRQLKVTVKR 123 (176)
Q Consensus 111 ~~~g~~i~v~~a~ 123 (176)
.++|+.|.|.+..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999874
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=4.3e-14 Score=96.30 Aligned_cols=78 Identities=26% Similarity=0.299 Sum_probs=67.9
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHhhhCCCeeEEEEeeCCC-----CCceeEEEEEecCHHHHHHHH-HhCCCeeCC
Q 030488 46 DSRSVFVGNVD--YSC---TPEEVQQHFQSCGTVNRVTIRTDKF-----GQPKGYAYVEFLQSEAVQEAL-HLNESELHG 114 (176)
Q Consensus 46 ~~~~i~v~~lp--~~~---t~~~l~~~f~~~G~i~~~~~~~~~~-----g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 114 (176)
++++|+|.|+- .++ .+++|++.|++||.|.+|.|+.++. +.++||+||+|.+.++|.+|+ .||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46889999983 222 3689999999999999999998762 467899999999999999999 799999999
Q ss_pred eeeEEEecc
Q 030488 115 RQLKVTVKR 123 (176)
Q Consensus 115 ~~i~v~~a~ 123 (176)
+.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-13 Score=89.54 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEEEeccCCC
Q 030488 57 YSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKVTVKRTNV 126 (176)
Q Consensus 57 ~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v~~a~~~~ 126 (176)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.||.. ...+.++.|+|.+++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCC
Confidence 468999999999999999999998 35699999999999999999942 334679999999987643
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.50 E-value=5.3e-14 Score=111.95 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=64.1
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeC---Ce--
Q 030488 44 EVDSRSVFVGN--VDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH---GR-- 115 (176)
Q Consensus 44 ~~~~~~i~v~~--lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~---g~-- 115 (176)
..++.+|||+| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|+ +||+.++- |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999999 578999999999999999999987754 3799999999999999999 79999883 44
Q ss_pred eeEEEecc
Q 030488 116 QLKVTVKR 123 (176)
Q Consensus 116 ~i~v~~a~ 123 (176)
.|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777663
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=2e-12 Score=87.46 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCC--CCC--------CHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeC
Q 030488 45 VDSRSVFVGNVD--YSC--------TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELH 113 (176)
Q Consensus 45 ~~~~~i~v~~lp--~~~--------t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 113 (176)
.+++.|.|.|+= .+. .+++|++.|++||.|.+|.|.++. .+||+||+|.+.++|++|+ .||+..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456788888882 221 135789999999999999987653 4899999999999999999 79999999
Q ss_pred CeeeEEEecc
Q 030488 114 GRQLKVTVKR 123 (176)
Q Consensus 114 g~~i~v~~a~ 123 (176)
|+.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999874
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=5e-12 Score=85.98 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecC-HHHHHHHH-HhC--CCeeCCeeeE
Q 030488 44 EVDSRSVFVGNVDYS-CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQ-SEAVQEAL-HLN--ESELHGRQLK 118 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~-~~~a~~a~-~l~--~~~~~g~~i~ 118 (176)
-..+..|||+||+.+ ++.++|+++|++||.|..|.+..+. ..|||.|.+ .++|+.|+ +++ +..|++..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 456899999999999 9999999999999999999998874 369999999 88999999 674 7889999999
Q ss_pred EEec
Q 030488 119 VTVK 122 (176)
Q Consensus 119 v~~a 122 (176)
+++.
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8765
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=79.62 Aligned_cols=75 Identities=27% Similarity=0.381 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCee
Q 030488 45 VDSRSVFVGNVDY----SCTP----EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQ 116 (176)
Q Consensus 45 ~~~~~i~v~~lp~----~~t~----~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 116 (176)
.+..+|+|.-++. ++.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||.||+..++|+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 3456788877662 3333 6789999999999999999764 89999999999999999999999999
Q ss_pred eEEEeccCCC
Q 030488 117 LKVTVKRTNV 126 (176)
Q Consensus 117 i~v~~a~~~~ 126 (176)
|+|.++.+..
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999998654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.4e-10 Score=74.85 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=62.3
Q ss_pred CCCCCEEEEcCCCCC-----CCH----HHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCC
Q 030488 44 EVDSRSVFVGNVDYS-----CTP----EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 114 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~-----~t~----~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g 114 (176)
..+..+|+|.-++.+ +.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||.|++..++|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 345678999888643 322 5689999999999999999773 999999999999999999999999
Q ss_pred eeeEEEecc
Q 030488 115 RQLKVTVKR 123 (176)
Q Consensus 115 ~~i~v~~a~ 123 (176)
+.|+|.+..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.03 E-value=6.8e-10 Score=83.05 Aligned_cols=65 Identities=28% Similarity=0.301 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhCCCeeEEEEeeCC-----CCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 59 CTPEEVQQHFQSCGTVNRVTIRTDK-----FGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 59 ~t~~~l~~~f~~~G~i~~~~~~~~~-----~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
-.+++|.+.|++||.|.++.|+.+. ++.++|++||+|.+.++|++|+ .||+..++|+.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999998654 3589999999999999999999 799999999999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=4.7e-08 Score=64.40 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhC-----CCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEE
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSC-----GTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKV 119 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~-----G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v 119 (176)
..++|-+=|||..+++..|+.+++.+ |.|..+.+..| -+-|+|+|.+...|.+|. +|++.+|.|+.|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 35678888999999999999999999 99999999988 566999999999999988 99999999999999
Q ss_pred Eec
Q 030488 120 TVK 122 (176)
Q Consensus 120 ~~a 122 (176)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 753
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=4.9e-06 Score=54.24 Aligned_cols=73 Identities=19% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhh-----CCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCCeeeEE
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQS-----CGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHGRQLKV 119 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~-----~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~i~v 119 (176)
....+|.|.|||..+.++.|+-+|+. =|+|+.+.... +-|+|+|.+.+.|+..|+-..+.|.+..|.|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 34688999999999999999999986 25888887753 4699999999999999987789999999999
Q ss_pred EeccC
Q 030488 120 TVKRT 124 (176)
Q Consensus 120 ~~a~~ 124 (176)
...-+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 87544
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=8.4e-06 Score=53.33 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEE
Q 030488 47 SRSVFVGNVDYSC-T----PEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVT 120 (176)
Q Consensus 47 ~~~i~v~~lp~~~-t----~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~ 120 (176)
.++|+|.||+.++ + .+.++.+|..|+++......+. -.-..|.|.+.++|.+|- .||+..+.|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4789999998865 2 2567899999999887766644 234789999999999999 799999999999999
Q ss_pred eccC
Q 030488 121 VKRT 124 (176)
Q Consensus 121 ~a~~ 124 (176)
++.+
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9874
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.81 E-value=0.00016 Score=46.34 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=55.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C--CCceeEEEEEecCHHHHHHHH-HhCCCeeCC
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F--GQPKGYAYVEFLQSEAVQEAL-HLNESELHG 114 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~--g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 114 (176)
.+|.|.+||+++|++++.+.+.....+....++..+ + ...-.-|+|.|.+.+++.... .++++.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 478999999999999999999998887777666554 2 234567999999999999988 799998843
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00031 Score=47.05 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCC-eeeEEEec
Q 030488 45 VDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG-RQLKVTVK 122 (176)
Q Consensus 45 ~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g-~~i~v~~a 122 (176)
....-|-|-+.|+.. .+.|..+|++||.|.+..... ...+-.|.|.+..+|++||..|+..|++ ..|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 446778888999885 677888999999998877621 2568999999999999999999999985 67777764
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.50 E-value=0.00048 Score=44.36 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=43.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH 106 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 106 (176)
.+.++| ++|.++...||.++|+.||.| .|.++.|. .|||.|.+++.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHH
Confidence 456667 999999999999999999954 56666653 69999999999999994
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.35 E-value=0.00042 Score=44.74 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=43.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHH-hC
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALH-LN 108 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~-l~ 108 (176)
+.++| ++|.++...||.++|+.||. ..|.++.|. .|||.|.+++.|..|+. +.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 34566 99999999999999999994 466777653 69999999999999994 53
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.21 E-value=0.00018 Score=59.14 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=44.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHh
Q 030488 44 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHL 107 (176)
Q Consensus 44 ~~~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l 107 (176)
+...++|+|. .|..+++.+|.++|++||+|.++.+-.++ .-||.|+|.+.++++.++..
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 3446889997 79999999999999999999999887654 47999999999999988743
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.87 E-value=0.00097 Score=43.01 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C--CCceeEEEEEecCHHHHHHHH-HhCCCeeCC
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-F--GQPKGYAYVEFLQSEAVQEAL-HLNESELHG 114 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~--g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 114 (176)
+-+|.|..||+.+|++++.+.+...-.+.....+..+ + ...-.-|+|.|.+.+++.... ..++..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4679999999999999988777765444332222222 1 112356899999999999988 699988743
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.43 E-value=0.0047 Score=41.95 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeE-EEEeeCC---------C----C-CceeEEEEEecCHHHHHHHHHhCCCe
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNR-VTIRTDK---------F----G-QPKGYAYVEFLQSEAVQEALHLNESE 111 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~-~~~~~~~---------~----g-~~~g~afv~f~~~~~a~~a~~l~~~~ 111 (176)
...|.|-+.|++.+ ..+-+.|++||.|.+ +.+..+. . . ...++..|.|.+..+|++||..|+..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 34566778887655 556778999999854 2221100 0 0 13567899999999999999999999
Q ss_pred eCCeeeEEEecc
Q 030488 112 LHGRQLKVTVKR 123 (176)
Q Consensus 112 ~~g~~i~v~~a~ 123 (176)
|+|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999999998764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.03 E-value=0.0063 Score=42.23 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=26.4
Q ss_pred EEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCC
Q 030488 76 RVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNE 109 (176)
Q Consensus 76 ~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~ 109 (176)
.+.|.++.. .++|||||+|.+.++|++|+ .+++
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcc
Confidence 355666554 58999999999999999999 6664
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.08 E-value=0.0043 Score=40.96 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc---CCCCCCCCCCcccccCCCCCEEEEcCCCCCCCHHH
Q 030488 5 LKEMEEEATALRQMHAKVGNEMAS---KQDPAAGGSSLANREEVDSRSVFVGNVDYSCTPEE 63 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~~lp~~~t~~~ 63 (176)
|...+++.+|+++++...-..... ...+................+|||+|||+++|++.
T Consensus 52 f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 52 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 455677778888877643211111 10111111111122233456799999999999864
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.06 E-value=0.0075 Score=41.60 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=34.9
Q ss_pred CCceeEEEEEecCHHHHHHHH-Hh-CCCeeCCeeeEEEeccC
Q 030488 85 GQPKGYAYVEFLQSEAVQEAL-HL-NESELHGRQLKVTVKRT 124 (176)
Q Consensus 85 g~~~g~afv~f~~~~~a~~a~-~l-~~~~~~g~~i~v~~a~~ 124 (176)
...+|+++|+|.+.++|++|+ ++ |+..++| .|.|..+..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 356899999999999999999 78 9999999 999998754
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.63 E-value=0.65 Score=38.61 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhC
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLN 108 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~ 108 (176)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++ .++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4566676 88899999999999999954 6666543 36999999999999999 564
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=83.96 E-value=0.34 Score=30.51 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc---CCCCCC--CCCCcccccCCCCCEEEEcCCCC
Q 030488 5 LKEMEEEATALRQMHAKVGNEMAS---KQDPAA--GGSSLANREEVDSRSVFVGNVDY 57 (176)
Q Consensus 5 ~~e~e~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~i~v~~lp~ 57 (176)
|.+.+++.+|+++++...-..... +..+.. ..............+||||||++
T Consensus 44 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 44 FEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred ECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCCC
Confidence 455677778888777643211110 001111 01111111223367899999974
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=78.50 E-value=9.9 Score=23.83 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-Hh
Q 030488 46 DSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL 107 (176)
Q Consensus 46 ~~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l 107 (176)
.++.|-|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++...|+ .|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 46778889999999999988777777765566665 567999999999999898 53
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.05 E-value=10 Score=22.30 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHhhhCCC-----eeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-HhCCCeeCCeeeEEEecc
Q 030488 57 YSCTPEEVQQHFQSCGT-----VNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HLNESELHGRQLKVTVKR 123 (176)
Q Consensus 57 ~~~t~~~l~~~f~~~G~-----i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~i~v~~a~ 123 (176)
..++..+|..++..-+. |-.+.+. ..|.||+-.... +..++ .|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 34677788888886553 4566665 347888887644 66777 799999999999998764
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=63.29 E-value=22 Score=25.04 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=37.4
Q ss_pred EEEEcCCCC---------CCCHHHHHHHh--hhCCCeeEEEEeeCCCCCceeEEEEEecCHH-HHHHHHHhC
Q 030488 49 SVFVGNVDY---------SCTPEEVQQHF--QSCGTVNRVTIRTDKFGQPKGYAYVEFLQSE-AVQEALHLN 108 (176)
Q Consensus 49 ~i~v~~lp~---------~~t~~~l~~~f--~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~-~a~~a~~l~ 108 (176)
++.|-|+|. .....+|++.| ..|.++. |....+..| +.|+|.|.|.+-- -...|+.|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHHHH
Confidence 455566665 13447889977 8998865 555555544 5889999996543 355566544
No 227
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=47.55 E-value=27 Score=27.85 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=39.3
Q ss_pred EEEcCCCCCC----CHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeCC
Q 030488 50 VFVGNVDYSC----TPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELHG 114 (176)
Q Consensus 50 i~v~~lp~~~----t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~g 114 (176)
-+||||+.-. ....+.++..+||+|-.+.+. +.-+|...+.+.++.++.-+...+.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~~~~~~f~~ 77 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLIKKGKDFSG 77 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHTTTTTTTBB
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHHhCcHhhCC
Confidence 3588876432 246678888899999888773 23567778999999888444444443
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=46.08 E-value=39 Score=19.03 Aligned_cols=58 Identities=3% Similarity=-0.020 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCC
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNES 110 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~ 110 (176)
..++.|.++.=.--...|++.+.. -.|..+.+... .+-+.|+|.+.+....+|.--++
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHcCC
Confidence 356788888776677889999999 88888877554 56788888866677777754444
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=43.65 E-value=27 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEE
Q 030488 47 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 79 (176)
Q Consensus 47 ~~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~ 79 (176)
...+.|+|||+.++...|.+++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356789999999999999999987 55544433
No 230
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=38.60 E-value=3.5 Score=28.32 Aligned_cols=28 Identities=11% Similarity=0.379 Sum_probs=14.8
Q ss_pred HHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEec
Q 030488 62 EEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFL 96 (176)
Q Consensus 62 ~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~ 96 (176)
+|+.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 345556666666644322 2788998865
No 231
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=36.81 E-value=17 Score=27.44 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=24.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEE
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 79 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~ 79 (176)
..+.|+|||+.++..-|.+++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46789999999999999999986545554444
No 232
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=36.69 E-value=18 Score=28.55 Aligned_cols=55 Identities=24% Similarity=0.123 Sum_probs=35.1
Q ss_pred EEcCCCCC---CCHHHHHHHhhhCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHHHhCCCeeC
Q 030488 51 FVGNVDYS---CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEALHLNESELH 113 (176)
Q Consensus 51 ~v~~lp~~---~t~~~l~~~f~~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~l~~~~~~ 113 (176)
+|||+..- -....+.++..+||+|-.+.+. +.-+|...+.+.++.++.-+...+.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~i~~vl~~~~~~f~ 77 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA--------WTPVVVLNGLAAVREALVTHGEDTA 77 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET--------TEEEEEEEHHHHHHHHHTTTGGGSC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC--------CeeEEEECCHHHHHHHHHhCChhhc
Confidence 46776532 2345678888999999887763 1235666788888777744444443
No 233
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=31.20 E-value=17 Score=17.47 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=5.0
Q ss_pred CCCCCCCCC
Q 030488 167 RMPMRYSPY 175 (176)
Q Consensus 167 r~~~r~~py 175 (176)
|+..||.||
T Consensus 16 rggnrfepY 24 (30)
T 2ot8_C 16 RGGNRFEPY 24 (30)
T ss_pred cCCcccccc
Confidence 345566665
No 234
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=30.89 E-value=50 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHhh----hCCCeeEEEEeeCCCCCceeEEEEEecCHHHHHHHH-Hh
Q 030488 54 NVDYSCTPEEVQQHFQ----SCGTVNRVTIRTDKFGQPKGYAYVEFLQSEAVQEAL-HL 107 (176)
Q Consensus 54 ~lp~~~t~~~l~~~f~----~~G~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~-~l 107 (176)
..+.+.+--||..+|- .+|-|.++.|..-+-.....++++.|.+.+++..++ .+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3455555557888884 578898888866555556778899999999998888 54
No 235
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=30.68 E-value=38 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=22.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeE
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNR 76 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~ 76 (176)
..+.|+|||+.++...|.+++...-.+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 46889999999999988888875433433
No 236
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.78 E-value=39 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=23.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeeEEEE
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 79 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~ 79 (176)
..+.|+|||+.++...|.+++.....+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 45789999999999999999886544444333
No 237
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=28.46 E-value=12 Score=29.42 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=6.0
Q ss_pred CCCHHHHHHHhh
Q 030488 58 SCTPEEVQQHFQ 69 (176)
Q Consensus 58 ~~t~~~l~~~f~ 69 (176)
.+++++|++...
T Consensus 228 ~vt~~~l~~i~~ 239 (358)
T 2pk2_A 228 TVTLELLDELTH 239 (358)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 345555554443
No 238
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=28.18 E-value=19 Score=26.70 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=23.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCeeEEEE
Q 030488 50 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTI 79 (176)
Q Consensus 50 i~v~~lp~~~t~~~l~~~f~~~G~i~~~~~ 79 (176)
..|+|||+.++...|.+++.....+..+.+
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 479999999999999999987655544444
No 239
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=27.85 E-value=1.2e+02 Score=19.29 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=34.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-------CCCeeEEEEeeCCCCC--ceeEE-EEEecCHHHHHHH
Q 030488 50 VFVGNVDYSCTPEEVQQHFQS-------CGTVNRVTIRTDKFGQ--PKGYA-YVEFLQSEAVQEA 104 (176)
Q Consensus 50 i~v~~lp~~~t~~~l~~~f~~-------~G~i~~~~~~~~~~g~--~~g~a-fv~f~~~~~a~~a 104 (176)
|.+-.|..+++++++.++... .-.|.++.+-.+.++. +--++ .++|.+.++.+.-
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~Y 89 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAY 89 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHHH
Confidence 334478888888876655543 3356777777665432 22334 5788888877643
No 240
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.07 E-value=57 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhh
Q 030488 48 RSVFVGNVDYSCTPEEVQQHFQS 70 (176)
Q Consensus 48 ~~i~v~~lp~~~t~~~l~~~f~~ 70 (176)
....|+|||++++..-|.+++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999988888874
No 241
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.28 E-value=54 Score=20.58 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=16.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhh
Q 030488 50 VFVGNVDYSCTPEEVQQHFQS 70 (176)
Q Consensus 50 i~v~~lp~~~t~~~l~~~f~~ 70 (176)
=+|.+|...||-.||-..+.+
T Consensus 19 r~VsGvT~~TTC~DVV~aL~~ 39 (95)
T 2cs4_A 19 RIVCGVTEVTTCQEVVIALAQ 39 (95)
T ss_dssp ECCSSBCSSSCHHHHHHHHHH
T ss_pred eEEECCCCCCcHHHHHHHHHh
Confidence 345688899999998886654
No 242
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.03 E-value=2e+02 Score=19.76 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCHHHHHHHhhhCCCe---eEEEEeeCC-CCCceeEEEEE
Q 030488 59 CTPEEVQQHFQSCGTV---NRVTIRTDK-FGQPKGYAYVE 94 (176)
Q Consensus 59 ~t~~~l~~~f~~~G~i---~~~~~~~~~-~g~~~g~afv~ 94 (176)
.|+++|.+.-.+.|.+ .++.+..+. +|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999999987 356677775 88888888765
Done!